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/** * Copyright (c) 2014-present, Facebook, Inc. * * This source code is licensed under the MIT license found in the * LICENSE file in the root directory of this source tree. */ var runtime = (function (exports) { "use strict"; var Op = Object.prototype; var hasOwn = Op.hasOwnProperty; var defineProperty...
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module.exports = minimatch minimatch.Minimatch = Minimatch var path = (function () { try { return require('path') } catch (e) {}}()) || { sep: '/' } minimatch.sep = path.sep var GLOBSTAR = minimatch.GLOBSTAR = Minimatch.GLOBSTAR = {} var expand = require('brace-expansion') var plTypes = { '!': { open: '(?:(?!(?:...
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const minimatch = module.exports = (p, pattern, options = {}) => { assertValidPattern(pattern) // shortcut: comments match nothing. if (!options.nocomment && pattern.charAt(0) === '#') { return false } return new Minimatch(pattern, options).match(p) } module.exports = minimatch const path = require('....
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"use strict"; /*-------------------------------------------------------------------------- @sinclair/typebox/errors The MIT License (MIT) Copyright (c) 2017-2023 Haydn Paterson (sinclair) <haydn.developer@gmail.com> Permission is hereby granted, free of charge, to any person obtaining a copy of this software and as...
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"use strict"; /*-------------------------------------------------------------------------- @sinclair/typebox/conditional The MIT License (MIT) Copyright (c) 2017-2023 Haydn Paterson (sinclair) <haydn.developer@gmail.com> Permission is hereby granted, free of charge, to any person obtaining a copy of this software a...
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'use strict'; Object.defineProperty(exports, '__esModule', { value: true }); exports.default = diffSequence; /** * Copyright (c) Meta Platforms, Inc. and affiliates. * * This source code is licensed under the MIT license found in the * LICENSE file in the root directory of this source tree. * */ // This diff-...
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'use strict'; const constants = require('./constants'); const utils = require('./utils'); /** * Constants */ const { MAX_LENGTH, POSIX_REGEX_SOURCE, REGEX_NON_SPECIAL_CHARS, REGEX_SPECIAL_CHARS_BACKREF, REPLACEMENTS } = constants; /** * Helpers */ const expandRange = (args, options) => { if (typeof...
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'use strict'; const { EventEmitter } = require('events'); const fs = require('fs'); const sysPath = require('path'); const { promisify } = require('util'); const readdirp = require('readdirp'); const anymatch = require('anymatch').default; const globParent = require('glob-parent'); const isGlob = require('is-glob'); c...
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'use strict'; /*! * mocha * Copyright(c) 2011 TJ Holowaychuk <tj@vision-media.ca> * MIT Licensed */ var escapeRe = require('escape-string-regexp'); var path = require('path'); var builtinReporters = require('./reporters'); var utils = require('./utils'); var mocharc = require('./mocharc.json'); var Suite = requir...
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'use strict'; Object.defineProperty(exports, '__esModule', { value: true }); exports.default = void 0; var _expectUtils = require('@jest/expect-utils'); var _jestGetType = require('jest-get-type'); var _jestMatcherUtils = require('jest-matcher-utils'); var _print = require('./print'); /** * Copyright (c) Meta Platf...
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/* -*- Mode: js; js-indent-level: 2; -*- */ /* * Copyright 2011 Mozilla Foundation and contributors * Licensed under the New BSD license. See LICENSE or: * http://opensource.org/licenses/BSD-3-Clause */ var util = require('./util'); var binarySearch = require('./binary-search'); var ArraySet = require('./array-set...
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process.emitWarning("The .es.js file is deprecated. Use .mjs instead."); import Stream from 'stream'; import http from 'http'; import Url from 'url'; import whatwgUrl from 'whatwg-url'; import https from 'https'; import zlib from 'zlib'; // Based on https://github.com/tmpvar/jsdom/blob/aa85b2abf07766ff7bf5c1f6daafb37...
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// // function for_each_node() // // this is a small utility function, to replace Javascript's "forEach" funcionality in the case of static node lists. // Not all browsers do "forEach" correctly for this list type - we've actually seen numerous errors related to this in // Sentry reports of STRING // var selectedGenes...
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// Axios v1.3.5 Copyright (c) 2023 Matt Zabriskie and contributors function bind(fn, thisArg) { return function wrap() { return fn.apply(thisArg, arguments); }; } // utils is a library of generic helper functions non-specific to axios const {toString} = Object.prototype; const {getPrototypeOf} = Object; cons...
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/*! * chai * Copyright(c) 2011-2014 Jake Luer <jake@alogicalparadox.com> * MIT Licensed */ module.exports = function (chai, util) { /*! * Chai dependencies. */ var Assertion = chai.Assertion , flag = util.flag; /*! * Module export. */ /** * ### assert(expression, message) * * Wr...
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// Axios v1.3.5 Copyright (c) 2023 Matt Zabriskie and contributors (function (global, factory) { typeof exports === 'object' && typeof module !== 'undefined' ? module.exports = factory() : typeof define === 'function' && define.amd ? define(factory) : (global = typeof globalThis !== 'undefined' ? globalThis : glo...
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/*! https://mths.be/he v1.2.0 by @mathias | MIT license */ ;(function(root) { // Detect free variables `exports`. var freeExports = typeof exports == 'object' && exports; // Detect free variable `module`. var freeModule = typeof module == 'object' && module && module.exports == freeExports && module; // Detec...
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#!/usr/bin/env node import ys from"tty";import{v as ws}from"./package-69a34105.js";import{r as Dt}from"./pkgroll_create-require-b9328ee2.js";import{pathToFileURL as Rs,fileURLToPath as bs}from"url";import vs from"child_process";import K from"path";import ie from"fs";import Fu,{constants as Bs}from"os";import Ss from"ev...
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var OpenSeadragon = OpenSeadragon || {}; OpenSeadragon["Annotations"] = /******/ (function(modules) { // webpackBootstrap /******/ // The module cache /******/ var installedModules = {}; /******/ /******/ // The require function /******/ function __webpack_require__(moduleId) { /******/ /******/ // Check if modul...
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// Port of python's argparse module, version 3.9.0: // https://github.com/python/cpython/blob/v3.9.0rc1/Lib/argparse.py 'use strict' // Copyright (C) 2010-2020 Python Software Foundation. // Copyright (C) 2020 argparse.js authors /* * Command-line parsing library * * This module is an optparse-inspired command-li...
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/*! * chai * http://chaijs.com * Copyright(c) 2011-2014 Jake Luer <jake@alogicalparadox.com> * MIT Licensed */ module.exports = function (chai, _) { var Assertion = chai.Assertion , AssertionError = chai.AssertionError , flag = _.flag; /** * ### Language Chains * * The following are provided...
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/*! diff v3.5.0 Software License Agreement (BSD License) Copyright (c) 2009-2015, Kevin Decker <kpdecker@gmail.com> All rights reserved. Redistribution and use of this software in source and binary forms, with or without modification, are permitted provided that the following conditions are met: * Redistribution...
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/*! ***************************************************************************** Copyright (c) Microsoft Corporation. All rights reserved. Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www....
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//! openseadragon 2.3.1 //! Built on 2017-09-19 //! Git commit: v2.3.1-0-08414cd //! http://openseadragon.github.io //! License: http://openseadragon.github.io/license/ function OpenSeadragon(a){return new OpenSeadragon.Viewer(a)}!function(a){a.version={versionStr:"2.3.1",major:parseInt("2",10),minor:parseInt("3",10)...
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//! openseadragon 2.3.1 //! Built on 2017-09-19 //! Git commit: v2.3.1-0-08414cd //! http://openseadragon.github.io //! License: http://openseadragon.github.io/license/ /* * OpenSeadragon * * Copyright (C) 2009 CodePlex Foundation * Copyright (C) 2010-2013 OpenSeadragon contributors * * Redistribution and use in...
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/*! ***************************************************************************** Copyright (c) Microsoft Corporation. All rights reserved. Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www....
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/*! ***************************************************************************** Copyright (c) Microsoft Corporation. All rights reserved. Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www....
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(function(f){if(typeof exports==="object"&&typeof module!=="undefined"){module.exports=f()}else if(typeof define==="function"&&define.amd){define([],f)}else{var g;if(typeof window!=="undefined"){g=window}else if(typeof global!=="undefined"){g=global}else if(typeof self!=="undefined"){g=self}else{g=this}g.chai = f()}})(...
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(function webpackUniversalModuleDefinition(root, factory) { if(typeof exports === 'object' && typeof module === 'object') module.exports = factory(); else if(typeof define === 'function' && define.amd) define([], factory); else if(typeof exports === 'object') exports["sourceMap"] = factory(); else root["sou...
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// mocha@10.2.0 in javascript ES2018 (function (global, factory) { typeof exports === 'object' && typeof module !== 'undefined' ? module.exports = factory() : typeof define === 'function' && define.amd ? define(factory) : (global = typeof globalThis !== 'undefined' ? globalThis : global || self, global.mocha = fa...
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!function(n){if("object"==typeof exports&&"undefined"!=typeof module)module.exports=n();else if("function"==typeof define&&define.amd)define([],n);else{var t;((t="undefined"!=typeof window?window:"undefined"!=typeof global?global:"undefined"!=typeof self?self:this).lunr||(t.lunr={})).wordcut=n()}}(function(){return fun...
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include("direct.jl") include("rts.jl") include("tv.jl") include("nltv.jl")
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include("ismv.jl") include("lbv.jl") include("pdf.jl") include("sharp.jl")
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ProjDir = joinpath(dirname(@__FILE__), "..", "Examples", "Bones2") isfile(tmpdir) && rm(tmpdir); include(joinpath(ProjDir, "jbones2.jl")) isdir(tmpdir) && rm(tmpdir, recursive=true);
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ProjDir = joinpath(dirname(@__FILE__), "..", "Examples", "Bones1") tmpdir = joinpath(ProjDir, "tmp") isdir(tmpdir) && rm(tmpdir, recursive=true); include(joinpath(ProjDir, "jbones1.jl")) isdir(tmpdir) && rm(tmpdir, recursive=true);
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ProjDir = joinpath(dirname(@__FILE__), "..", "Examples", "Dyes") tmpdir = joinpath(ProjDir, "tmp") isdir(tmpdir) && rm(tmpdir, recursive=true); include(joinpath(ProjDir, "jdyes.jl")) isdir(tmpdir) && rm(tmpdir, recursive=true);
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ProjDir = joinpath(dirname(@__FILE__), "..", "Examples", "Line3") tmpdir = joinpath(ProjDir, "tmp") isdir(tmpdir) && rm(tmpdir, recursive=true); include(joinpath(ProjDir, "jline3.jl")) isdir(tmpdir) && rm(tmpdir, recursive=true);
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ProjDir = joinpath(dirname(@__FILE__), "..", "Examples", "Line1") tmpdir = joinpath(ProjDir, "tmp") isdir(tmpdir) && rm(tmpdir, recursive=true); include(joinpath(ProjDir, "jline1.jl")) isdir(tmpdir) && rm(tmpdir, recursive=true);
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ProjDir = joinpath(dirname(@__FILE__), "..", "Examples", "Line4") tmpdir = joinpath(ProjDir, "tmp") isdir(tmpdir) && rm(tmpdir, recursive=true); include(joinpath(ProjDir, "jline4.jl")) isdir(tmpdir) && rm(tmpdir, recursive=true);
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ProjDir = joinpath(dirname(@__FILE__), "..", "Examples", "Rats") tmpdir = joinpath(ProjDir, "tmp") isdir(tmpdir) && rm(tmpdir, recursive=true); include(joinpath(ProjDir, "jrats.jl")) isdir(tmpdir) && rm(tmpdir, recursive=true);
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ProjDir = joinpath(dirname(@__FILE__), "..", "Examples", "Line2") tmpdir = joinpath(ProjDir, "tmp") isdir(tmpdir) && rm(tmpdir, recursive=true); include(joinpath(ProjDir, "jline2.jl")) isdir(tmpdir) && rm(tmpdir, recursive=true);
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using QSM: lap, wrapped_laplacian @testset "Wrapped Laplacian" for T in (Float32, Float64) Random.seed!(501) for sz in [(11,12,13), (12,13,14,5)] x, dx = rand(T, sz), Tuple(rand(T, 3)) @test wrapped_laplacian(x, dx) ≈ lap(x, dx) end end
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function expand(x::Tuple, n::Int) ntuple(i -> i > length(x) ? deepcopy(x[end]) : x[i], Val(n)) end function expand(x::Tx, n::Int) where {Tx<:AbstractVector} Tx[i > length(x) ? deepcopy(x[end]) : x[i] for i in 1:n] end function expand(x, n::Int) [deepcopy(x) for _ in 1:n] end
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using Aqua using DSP: conv using FFTW using LinearAlgebra using QSM using Random using SparseArrays using Statistics: mean using Test @testset "Unwrap" begin include("unwrap/unwrap.jl") end @testset "Utils" begin include("utils/utils.jl") end #@testset "QSM.jl" begin # Aqua.test_all(QSM) #end
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#!/bin/bash #convert sample data to a fasta file as input data datafile = "test.in" lines = readlines(datafile) fastafile = "test.fasta" io = open(fastafile, "w") n = length(lines) l = length(lines[1]) write(io,"$n $l \n") for i in 1:n write(io, string(">",i,"\n")) write(io, lines[i]) write(io, "\n") end c...
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include("laplacian.jl") @inline _wrap(x) = rem2pi(x, RoundNearest) # faster, less accurate rem2pi(x, RoundNearest) # sufficient accuracy for unwrapping MRI phase @inline function _wrap(x::Float64) ax = abs(x) if ax < π x elseif ax < twoπ x - flipsign(Float64(twoπ), x) else n =...
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using QSM using Documenter DocMeta.setdocmeta!(QSM, :DocTestSetup, :(using QSM); recursive=true) makedocs(; modules=[QSM], authors="kamesy <ckames@physics.ubc.ca>", repo="https://github.com/kamesy/QSM.jl/blob/{commit}{path}#{line}", sitename="QSM.jl", format=Documenter.HTML(; prettyurls=ge...
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using Jags, StatsPlots, Random, Distributions ProjDir = @__DIR__ Random.seed!(3431) y = rand(Normal(0,1),50) Model = " model { for (i in 1:length(y)) { y[i] ~ dnorm(mu,sigma); } mu ~ dnorm(0, 1/sqrt(10)); sigma ~ dt(0,1,1) T(0, ); } " monitors = Dict( "mu" => true, "sigma...
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module Winding_number using LinearAlgebra export wind_number function wind_number(X,P) """ Return the winding number for the point X with respect to the (closed) path P. """ # step 1: normalize the vector X-P_i N = length(P[:,1]) u = zeros(N,2) for i=1:N u[i,:] = (P[i,:] - X)/n...
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## Input: ## -- .tre files from mcmc bistro with list of sampled trees with branch lengths ## Output: ## -- List of adjacency matrices ## Claudia October 2019 using PhyloNetworks, HDF5, DataFrames ##, DelimitedFiles include("functions.jl") t1 = readMultiTopology("../data/after---0-249.treeBL") t2 = readMultiTopology(...
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println("Running tests for Jags-j1.7-v3.1.0") using Compat, Jags using Test code_tests = ["test_cmd.jl"] println("Run execution_tests only if Jags is available") execution_tests = [ "test_line1.jl", #"test_line2.jl", "test_line3.jl", "test_line4.jl", "test_rats.jl", "test_bones1.jl", "test_bones2.jl", ...
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""" bet( mag::AbstractArray{<:Real, 3}, vsz::NTuple{3, Real}, betargs::AbstractString = "-m -n -f 0.5" ) -> Array{Bool, 3} Interface to FSL's bet. ### Arguments - `mag::AbstractArray{<:Real, 3}`: magnitude image - `vsz::NTuple{3, Real}`: voxel size - `betargs::AbstractString = "-m -n -...
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#= Create/Plot individual velocities =# using FileIO, JSON, DataFrames # perso push!(LOAD_PATH,"lib") using Plot_df_cells # parameters #----------- list_nameExp = ["NPA_stich_3"] #---------------------------------------------------# # Mega loop # #---------------------------...
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using Jags, StatsPlots, Random, Distributions cd(@__DIR__) ProjDir = pwd() Random.seed!(3431) y = rand(Normal(0,1),50) Model = " model { for (i in 1:length(y)) { y[i] ~ dnorm(mu[i],sigma); } for(i in 1:length(y)){ mu[i] ~ dnorm(0, 1/sqrt(10)); } sigma ~ dt(0...
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######### Jags line program example ########### using StatsPlots, Jags, Statistics, Random Random.seed!(0) ProjDir = @__DIR__ cd(ProjDir) line = " model { for (i in 1:n) { mu[i] <- alpha + beta*(x[i] - x.bar); y[i] ~ dnorm(mu[i],tau); } x.bar <- mean(x[]); alpha ~ dnorm(0.0,1.0E-4); ...