sha256 stringlengths 64 64 | language stringclasses 28
values | size int32 1 491k | lines int32 1 23.2k | content stringlengths 1 200k |
|---|---|---|---|---|
4edb813a7eb53a88351856c718eee03d7b7ce183d8ade9c121aed83462b17483 | NEURON | 1,352 | 73 | COMMENT
Conceptual model: D current for a model of a fast-spiking cortical interneuron.
Authors and citation:
Golomb D, Donner K, Shacham L, Shlosberg D, Amitai Y, Hansel D (2007).
Mechanisms of Firing Patterns in Fast-Spiking Cortical Interneurons.
PLoS Comput Biol 3:e156.
Original implementation and program... |
41bdf0cb50d0ffee60d1e18156687b169623066f478e62b6019fedcd7a0f412c | NEURON | 1,360 | 78 | COMMENT
ipulse2.mod
Generates a train of current pulses
User specifies dur (pulse duration), per (period, i.e. interval between pulse onsets),
and number of pulses.
Ensures that period is longer than pulse duration.
2/6/2002 NTC
ENDCOMMENT
NEURON {
POINT_PROCESS Ipulse2
RANGE del, dur, per, num, amp, ... |
b77cf3be5c8bd01f39aeead95aaafd31fbdff0d9c673cabc7384f14878b52961 | NEURON | 1,360 | 60 | /*****************************
TMS simulator for T2N morphologies
Main simulation function; call to execute and run according to input parameters
AUTHOR: Nicholas Hananeia
CONTACT: nickhananeia@gmail.com
*******************************/
func TMS_sim(){ localobj detector
//*********Load libraries and initialize******... |
3908bf1cbd541aa19ccfe2d776b69962dbd83c3af4486f36c5279a8f6a66e906 | NEURON | 1,361 | 85 | TITLE Cortical Muscarinic current
COMMENT
-----------------------------------------------------------------------------
Muscarinic potassium current
----------------------------
- noninactivating K+ current responsible for the adaptation of firing rate
and the afterhyperpolarization (AHP) of cortical pyramid... |
db9ac0c44589a98e40b568d71363df76a73d8b924d704772b071ce092f84eff6 | NEURON | 1,387 | 81 | :Reference :Colbert and Pan 2002, from Hay et al., 2011 PLOS Comp Bio, https://doi.org/10.1371/journal.pcbi.1002107
:comment: took the NaTa and shifted both activation/inactivation by 6 mv
:Comment : corrected rates using q10 = 2.3, target temperature 37 (K. Duecker for duecker_ET_model, fast L5 ET pyr APs), orginal ... |
d3d74e92856a639dcb735b9b08f07ab6cc2fcafaf814509a6fe2e52b0701fa2f | NEURON | 1,390 | 80 | :Reference :Colbert and Pan 2002, from Hay et al., 2011 PLOS Comp Bio, https://doi.org/10.1371/journal.pcbi.1002107
:comment: took the NaTa and shifted both activation/inactivation by 6 mv
:Comment : corrected rates using q10 = 2.3, target temperature 32 (K. Duecker for duecker_ET_model, slower L2/3 pyr APs), orginal 2... |
b4a999e8fc34963602eda0e44e725227d7b1936c34ef11c40fe89e255dbef129 | NEURON | 1,487 | 84 | TITLE fast activated potassium Kv3 (Kv3.1/3.2) for PV interneurons
COMMENT
modeled by Gunay et al., 2008
implemented in NEURON by Kitano, 2011
ENDCOMMENT
UNITS {
(mV) = (millivolt)
(mA) = (milliamp)
}
NEURON {
SUFFIX Kv3m
USEION k READ ek WRITE ik
RANGE gmax, iKv3, ik
RANGE theta_m, k_m, tau_m0, tau_m1, phi_... |
dce60b676477b22f81170dace454197cb15f3fcb71ea98745d0cc6b92169eaee | NEURON | 1,492 | 84 | TITLE fast activated potassium Kv3 (Kv3.1/3.2) for PV interneurons
COMMENT
modeled by Gunay et al., 2008
implemented in NEURON by Kitano, 2011
ENDCOMMENT
UNITS {
(mV) = (millivolt)
(mA) = (milliamp)
}
NEURON {
SUFFIX Kv3mixed
USEION k READ ek WRITE ik
RANGE gmax, iKv3, ik
RANGE theta_m, k_m, tau_m0, tau_m1, ... |
d48afdbc6e2fd2593a76f8167d011c2af7081c2946ea8e5f1467408573faf4e4 | NEURON | 1,494 | 90 | TITLE fast activated potassium Kv3 (Kv3.1/3.2) for PV interneurons
COMMENT
modeled by Gunay et al., 2008
implemented in NEURON by Kitano, 2011
ENDCOMMENT
UNITS {
(mV) = (millivolt)
(mA) = (milliamp)
}
NEURON {
SUFFIX Kv3
USEION k READ ek WRITE ik
RANGE gmax, iKv3, ik
RANGE theta_m, k_m, tau_m0, tau_m1, phi_m... |
6f16e36623aca6513edceafe485e00dc1aa58fe820335c8ffe3998f5b90649b2 | NEURON | 1,533 | 100 | : HH TEA-sensitive Purkinje potassium current
: Created 8/5/02 - nwg
: Suffix from kpkj to Kv3_4
NEURON {
SUFFIX Kv3_4
USEION k READ ek WRITE ik
RANGE gkbar, ik
RANGE minf, hinf, mtau, htau
}
UNITS {
(mV) = (millivolt)
(mA) = (milliamp)
}
CONSTANT {
q10 = 3
}
PARAMETER {
v (mV)
gk... |
a123155d554c345f05587c0cadc6b7c94a53e4e7e558218aa5edbdbdcc53f9be | NEURON | 1,538 | 85 | :Comment : mtau deduced from text (said to be 6 times faster than for NaTa)
:Comment : so I used the equations from NaT and multiplied by 6
:Reference : Modeled according to kinetics derived from Magistretti & Alonso 1999
:Comment: corrected rates using q10 = 2.3, target temperature 34, orginal 21
: **Modified to use '... |
a179c0693962bf469c50e6eb107d4b9a99e47a2beff0a523e020d563c436fae4 | NEURON | 1,550 | 85 | :Comment : mtau deduced from text (said to be 6 times faster than for NaTa)
:Comment : so I used the equations from NaT and multiplied by 6
:Reference : Modeled according to kinetics derived from Magistretti & Alonso 1999, from Hay et al., 2011 PLOS Comp Bio, https://doi.org/10.1371/journal.pcbi.1002107
:Comment: corre... |
d459b5aa2bfb4b24d13eb11651551dc55fa9c60e43c7e54a8f4b2eb8e8878303 | NEURON | 1,551 | 82 | TITLE H-current that uses Na ions
NEURON {
SUFFIX h
RANGE gbar,vhalf, K, taun, ninf, g ,ina
USEION na READ ena WRITE ina
: NONSPECIFIC_CURRENT i
}
UNITS {
(um) = (micrometer)
(mA) = (milliamp)
(uA) = (microamp)
(mV) = (millivolt)
(pmho) = (picomho)
(mmho) = (millimho)
}
... |
ff5389bd02c4fbe0507258481c6dd2f23fd1744dc60fa313882fbe8d1caa7722 | NEURON | 1,555 | 60 | /*
* $Id: stim.hoc,v 1.5 2009/02/24 00:55:27 ted Exp ted $
* Set up stimulation waveform
* 2018/05/20 Modified by Aman Aberra
* Modified by Sina Shirinpour
*/
//n_time = tstop/dt+1 // number of time points
objref stim_amp, stim_time
stim_amp = new Vector()//n_time)
stim_time = new Vector()//n_time)
proc stim_wavefor... |
d9bfd0b1d2547b58ad995836465b8d0897a7bbb9e0207931699170ae66bf0b09 | NEURON | 1,574 | 93 | TITLE K-DR channel
: from Klee Ficker and Heinemann
: modified to account for Dax et al.
: M.Migliore 1997
UNITS {
(mA) = (milliamp)
(mV) = (millivolt)
}
PARAMETER {
v (mV)
ek (mV) : must be explicitely def. in hoc
celsius (degC)
gkdrbar=.003 (mho/cm2)
vhalfn=13 (mV)
a0... |
7f19b0cd7e52d1de502e63ec43ec790d0e9d65490cca6f508e4988edc044ea1b | NEURON | 1,596 | 98 | TITLE CaGk
: Calcium activated K channel.
: Modified from Moczydlowski and Latorre (1983) J. Gen. Physiol. 82
UNITS {
(molar) = (1/liter)
}
UNITS {
(mV) = (millivolt)
(mA) = (milliamp)
(mM) = (millimolar)
}
NEURON {
SUFFIX mykca
USEION ca READ cai
USEION k READ ek WRITE ik
RANGE gkbar,ik
... |
2e1027b106461babf741261ad0a065e090f7cce8b2ef60cd05b1de97d730bf1c | NEURON | 1,600 | 102 | COMMENT
"NaV1.1" channel.
BBP 'fast' Na channel, but activation/inactivation vHalf and slope adjusted to fit experimental data.
ENDCOMMENT
:Reference :Colbert and Pan 2002
: Adapted by Werner Van Geit @ BBP, 2015 (with help from M.Hines):
: channel detects TTX concentration set by TTXDynamicsSwitch.mod
NEURON {
... |
c5c19769add3f357f2771e3808efdbe36eca9624816efaee8bc8960997111b2f | NEURON | 1,604 | 83 | COMMENT
Two state kinetic scheme described by rise time tau1,
and decay time constant tau2. The normalized peak current is 1nA.
Decay time MUST be greater than rise time.
The solution of A->G->bath with rate constants 1/tau1 and 1/tau2 is
A = a*exp(-t/tau1) and
G = a*tau2/(tau2-tau1)*(-exp(-t/tau1) + exp(-t/t... |
0745e1c1517fded02eb327e72b4b84ce35e6708f5480ca32d3d7557ce8d36154 | NEURON | 1,645 | 66 | // TREES package
// neu_tree (name)
//
//Saves a neuron morphology into a conversion filetype
// for the matlab TREES package. To keep things simple
// please never load more than ONE cell before applying
// this procedure. Read about restrictions in documentation
// Run by calling:
//
// load_file("neu_tree.hoc")
// n... |
df4b5c0ade15762bf70a048d502221cc8fab6292e304aa23a48836f940b9ebcb | NEURON | 1,647 | 66 | // TREES package
// neu_tree (name)
//
//Saves a neuron morphology into a conversion filetype
// for the matlab TREES package. To keep things simple
// please never load more than ONE cell before applying
// this procedure. Read about restrictions in documentation
// Run by calling:
//
// load_file("neu_tree.hoc")
// n... |
410c047a96b0310278fc52210b26acaa0a464dd767366f7466a8c9a41393958d | NEURON | 1,659 | 99 | TITLE Delayer rectifier
COMMENT
-----------------------------------------------------------------------------
"delayer-rectifier" K current for action potentials
---------------------------------------------------
- potassium current, voltage-dependent
- iterative equations
Model of IKd for hippocampal pyram... |
060e1d5778eb44684edb5f18d135ff8a15a1a2c09c1f7912a094771969a77fcb | NEURON | 1,668 | 92 | TITLE Calcium dependent potassium channel
: Implemented in Rubin and Cleland (2006) J Neurophysiology
: Parameters from Bhalla and Bower (1993) J Neurophysiology
: Adapted from /usr/local/neuron/demo/release/nachan.mod - squid
: by Andrew Davison, The Babraham Institute [Brain Res Bulletin, 2000]
:Suffix from... |
dc30dfb02d9b4b6e65c8dfe8d03febea947f5444883419320795ac897a2879a3 | NEURON | 1,719 | 111 | TITLE l-calcium channel
: l-type calcium channel
UNITS {
(mA) = (milliamp)
(mV) = (millivolt)
FARADAY = 96520 (coul)
R = 8.3134 (joule/degC)
KTOMV = .0853 (mV/degC)
}
PARAMETER {
v (mV)
celsius= 34 (degC)
gcalbar=0 (mho/cm2)
ki=.001 (mM)
cai = 50.e-6 (mM)
cao = 2 (mM)
tfa = 5
... |
877756752f696d5522ff46598dd108463170ae5a63efa675e8952c3a31f7cd07 | NEURON | 1,728 | 96 | TITLE CaV 3.3 CA3 hippocampal neuron
COMMENT
Cell model: CA3 hippocampal neuron
Created by jun xu @ Clancy Lab of Cornell University Medical College on 3/27/05
Geometry: single-compartment model modified on 04/19/07
Xu J, Clancy CE (2008) Ionic mechanisms of endogenous bursting in CA3 hippoc... |
4fdf34ae22fec2c89abaca89389c3e90f19200ae4396ae98b1faeb507aeaa567 | NEURON | 1,812 | 95 | TITLE Cerebellum Granule Cell Model
COMMENT
Reference: Theta-Frequency Bursting and Resonance in Cerebellar Granule Cells:Experimental
Evidence and Modeling of a Slow K+-Dependent Mechanism
Egidio D'Angelo,Thierry Nieus,Arianna Maffei,Simona Armano,Paola Rossi,Vanni Taglietti,
Andrea Fontana and Giovanni Nal... |
cc1df70f978753af93cc007ff250bd806b797a9d70482e2f42841098681b85b6 | NEURON | 1,820 | 94 |
TITLE Ca R-type channel with medium threshold for activation
: used in somatic regions. It has lower threshold for activation/inactivation
: and slower activation time constant
: than the same mechanism in dendritic regions
: uses channel conductance (not permeability)
: written by Yiota Poirazi on 3/12/01 poirazi@LNC... |
22bc5d9110c38612c083e498bdab14e52dde3e96b5a0560dd3b452c1181dcbbb | NEURON | 1,873 | 96 | TITLE Ca L-type channel with high treshold of activation
: inserted in distal dendrites to account for distally
: restricted initiation of Ca++ spikes
: uses channel conductance (not permeability)
: written by Yiota Poirazi, 1/8/00 poirazi@LNC.usc.edu
NEURON {
SUFFIX calH
USEION ca READ eca WRITE ica
RANGE g... |
017a84b49c607f2c59a41e416383b173783c9b6880bea24f912f8647c9582e4f | NEURON | 1,899 | 101 | TITLE I-h HCN1 channel from Kamilla Angelo, Michael London,Soren R. Christensen, and Michael Hausser 2007 J. of Neurosci.
COMMENT
We call it HCN1 as PC express only HCN1 Santoro et al. 2000
:aggiunta di correzione per Q10 by ERICA GRANDI
ENDCOMMENT
NEURON {
SUFFIX HCN1
USEION h READ eh WRITE ih VALENCE 1... |
40b9eb7f6488804973452f717282e82207fb3e82aa1f4d4d0729e6aa8ca8d032 | NEURON | 1,920 | 113 | TITLE K-DR channel
: from Klee Ficker and Heinemann
: modified to account for Dax et al.
: M.Migliore 1997
UNITS {
(mA) = (milliamp)
(mV) = (millivolt)
}
INDEPENDENT {t FROM 0 TO 1 WITH 1 (ms)}
PARAMETER {
dt (ms)
v (mV)
ek = -90 (mV) : must be explicitely def. in hoc
celsius = 24 (degC)
gkdrba... |
460fbf757d118c7907782b64b909c8c47898ab441ac7f1f54f699ab27543e3c7 | NEURON | 1,927 | 108 | COMMENT
26 Ago 2002 Modification of original channel to allow variable time step
and to correct an initialization error.
Done by Michael Hines (michael.hines@yale.edu) and Ruggero Scorcioni (rscorcio@gmu.edu)
at EU Advance Course in Computational Neuroscience. Obidos, Portugal
kca.... |
a7be0558303ad99b3d8ccc485b4390ae34cdca2aedab2fa35c028a1773da2c73 | NEURON | 2,012 | 104 | TITLE na3
: Na current for axon. No slow inact.
: M.Migliore Jul. 1997
NEURON {
SUFFIX nax
USEION na READ ena WRITE ina
RANGE gbar
GLOBAL minf, hinf, mtau, htau,thinf, qinf
}
PARAMETER {
gbar = 0.010 (mho/cm2)
:tha = -30 (mV) : v 1/2 for act
tha = -30 (mV) : v 1/2 for ... |
279c5c6cbcef8ef810083c0ebda063f5c62874a7b013f9a1bde257708329f168 | NEURON | 2,038 | 117 | TITLE Sodium channels
COMMENT
-----------------------------------------------------------------------------
Na current for action potentials
--------------------------------
- fast sodium current
- iterative equations
Model of INa for hippocampal pyramidal cells, from
Traub & Miles, Neuronal Networks of th... |
590057bf8213d981ffa527d5f89e0ae126dac71ca2133d6f46f0559346d93d2d | NEURON | 2,038 | 123 | TITLE K-A channel from Klee Ficker and Heinemann
: modified to account for Dax A Current --- M.Migliore Jun 1997
: modified to be used with cvode M.Migliore 2001
UNITS {
(mA) = (milliamp)
(mV) = (millivolt)
}
PARAMETER {
v (mV)
celsius (degC)
gkabar=.008 (mho/cm2)
vhalfn=11 (mV)
... |
ca72c6758a91e67becc3794fa98c9850d08ecb8e0ad0753a14bfbcec8ecc5c4f | NEURON | 2,063 | 109 | TITLE K-A channel from Klee Ficker and Heinemann
: modified to account for Dax A Current ----------
: M.Migliore Jun 1997
UNITS {
(mA) = (milliamp)
(mV) = (millivolt)
}
PARAMETER {
celsius
v (mV)
gkabar=.008 (mho/cm2)
vhalfn=-1 (mV)
vhalfl=-56 (mV)
... |
7c54dc2d7e8c3b70f8c0f79f8dea2c7ab40c2668c1731c939045de3bfa1cabc3 | NEURON | 2,089 | 99 | COMMENT
Conceptual model: Sodium current for a model of a fast-spiking cortical interneuron.
Authors and citation:
Golomb D, Donner K, Shacham L, Shlosberg D, Amitai Y, Hansel D (2007).
Mechanisms of Firing Patterns in Fast-Spiking Cortical Interneurons.
PLoS Comput Biol 3:e156.
Original implementation and pr... |
62ed5c4b64e7b34fa378379b2ae03be951f75420513674edbea3f79b94c68edf | NEURON | 2,200 | 103 | TITLE Low threshold calcium current
:
: Ca++ current responsible for low threshold spikes (LTS)
: RETICULAR THALAMUS
: Differential equations
:
: Model of Huguenard & McCormick, J Neurophysiol 68: 1373-1383, 1992.
:
: Written by Alain Destexhe, Salk Institute, Sept 18, 1992
:
: - Biophysica... |
a59777004d5773dfa33fbffc1f13e50e093425dc7e45c4100a2f6c71f68dccda | NEURON | 2,335 | 102 | /*
* Procedures for generating GUI panels for choosing E-field parameters
* AUTHOR: Sina Shirinpour, University of Minnesota
* CONTACT: shiri008[at]umn.edu
*/
objref shplot, pElec,sElec_list // for shape plot
/*
proc getes(){
E_uniform = $4
if (E_uniform){
getes_uniform($1, $2, $3)
} else {
getes_realis... |
8c9d4cdd9bf6ab79123e2c695ce236c35e4762709ec73a0764cb91f483aea163 | NEURON | 2,354 | 122 | TITLE na3
: Na current for axon. No slow inact.
: M.Migliore Jul. 1997
INDEPENDENT {t FROM 0 TO 1 WITH 1 (ms)}
NEURON {
SUFFIX nax
USEION na READ ena WRITE ina
RANGE gbar, ina, thegna
RANGE minf, hinf, mtau, htau
GLOBAL thinf, qinf, mscale, hscale
}
PARAMETER {
gbar = 0.010 (mho/cm2)
tha... |
afc5e382cc3107f8a3d1339755dfb3bb466f14ad14603a8d83ce91063ffab55e | NEURON | 2,397 | 126 | COMMENT
26 Ago 2002 Modification of original channel to allow variable time step
and to correct an initialization error.
Done by Michael Hines (michael.hines@yale.edu) and Ruggero Scorcioni (rscorcio@gmu.edu)
at EU Advance Course in Computational Neuroscience. Obidos, Portugal
km.m... |
8f56051645535a198b2b502828a234e0bec98690133d5654164290771f63b3c1 | NEURON | 2,412 | 132 | TITLE SK2 multi-state model Cerebellum Golgi Cell Model
COMMENT
Author:Sergio Solinas, Lia Forti, Egidio DAngelo
Based on data from: Hirschberg, Maylie, Adelman, Marrion J Gen Physiol 1998
Last revised: May 2007
Published in:
Sergio M. Solinas, Lia Forti, Elisabetta Cesana,
Jonathan Mapell... |
0e0deb8fce2627320b6b67ba95502f343032b35221c49117aa38f2f553d09318 | NEURON | 2,435 | 106 | TITLE Ca R-type channel with medium threshold for activation
: used in distal dendritic regions, together with calH.mod, to help
: the generation of Ca++ spikes in these regions
: uses channel conductance (not permeability)
: written by Yiota Poirazi on 11/13/00 poirazi@LNC.usc.edu
:
: updated to use CVode by Car... |
70037a156b125e74296ee9578cc8f5ac761b415cf00434f949d0321030d5cb60 | NEURON | 2,514 | 167 | // Connection Probability
Prob_PN2PN = 0.15//0.10
Prob_PN2MN = 0.10//0.05
Prob_PN2BN = 0.10//0.05
Prob_PN2VN = 0.10//0.05
Prob_MN2PN = 0.20//0.15
Prob_MN2MN = 0.10//0.05
Prob_MN2BN = 0.10//0.05
Prob_MN2VN = 0.10//0.05
Prob_BN2PN = 0.20//0.15
Prob_BN2MN = 0.10//0.05
Prob_BN2BN = 0.10//0.05
Prob_BN2VN = 0.10//0.05
Pro... |
8b313809960ae8de49c9dc004bbd97a6266b6eebd7930cf061bb327c96913878 | NEURON | 2,542 | 97 | COMMENT
26 Ago 2002 Modification of original channel to allow variable time step
and to correct an initialization error.
Done by Michael Hines (michael.hines@yale.edu) and Ruggero Scorcioni (rscorcio@gmu.edu)
at EU Advance Course in Computational Neuroscience. Obidos, Portugal
Int... |
b970b2f538ff2f2d450c2e84a68cc66be925c8f7dd91bce604beeb86210ae69b | NEURON | 2,621 | 133 | TITLE P-type calcium channel
COMMENT
Constructed from the recording data provided by Bruce Bean.
Reference: Swensen AM and Bean BP (2005) Robustness of burst firing in dissociated purkinje neurons with acute or long-term reductions in sodium conductance. J Neurosci 25:3509-20
Current Model Reference: Anwar H, Hong S... |
2fd5364621cfb1665ab8337cba4b5580b24af346bf490912ac5d846d3f707c5e | NEURON | 2,631 | 97 | TITLE decay of internal calcium concentration
:
: Internal calcium concentration due to calcium currents and pump.
: Differential equations.
:
: Simple model of ATPase pump with 3 kinetic constants (Destexhe 92)
: Cai + P <-> CaP -> Cao + P (k1,k2,k3)
: A Michaelis-Menten approximation is assumed, which red... |
e55c930fff3485829705c5ebc93a40c91cf1c27559d1dd01e10eb4f0b7e4f1c9 | NEURON | 2,641 | 118 | TITLE Cardiac IKur current & nonspec cation current with identical kinetics
: Hodgkin - Huxley type channels, modified to fit IKur data from Feng et al Am J Physiol 1998 275:H1717 - H 1725
: Suffix from Kv15 to Kv1_5
NEURON {
SUFFIX Kv1_5
USEION k READ ek WRITE ik :,ki,ko
:USEION na READ nai,nao
:USEION n... |
7008051a6fe750548251070aad91c8016b954158add4e6f47125e12f2dbb1431 | NEURON | 2,665 | 132 | TITLE na3
: Na current
: from Jeff M.
: ---------- modified -------M.Migliore may97
NEURON {
SUFFIX na3dend
USEION na READ ena WRITE ina
RANGE gbar, ar2
GLOBAL minf, hinf, mtau, htau, sinf, taus,qinf, thinf
}
PARAMETER {
gbar = 0.010 (mho/cm2)
tha = -23 (mV) : v 1/2 for act
q... |
3e2bcefbe83ea52b18ab4ff84963c2b3450393d60468a06fe04e116789b9a6d9 | NEURON | 2,670 | 132 | TITLE na3
: Na current
: from Jeff M.
: ---------- modified -------M.Migliore may97
NEURON {
SUFFIX na3notrunk
USEION na READ ena WRITE ina
RANGE gbar, ar2
GLOBAL minf, hinf, mtau, htau, sinf, taus,qinf, thinf
}
PARAMETER {
gbar = 0.010 (mho/cm2)
tha = -23 (mV) : v 1/2 for act ... |
3866b9220e020525e3482e235b41da946091e3f9bc164f2cf0942b1047310f7b | NEURON | 2,693 | 120 | TITLE Cardiac IKur current & nonspec cation current with identical kinetics
: Hodgkin - Huxley type channels, modified to fit IKur data from Feng et al Am J Physiol 1998 275:H1717 - H 1725
: Suffix from Kv15 to Kv1_5
NEURON {
SUFFIX Kv1_5
USEION k READ ek WRITE ik : is not working with ,ki,ko
:USEION na REA... |
72b1d7b72dc21324b92a287692c15a48b3276007631a328630eb21136d7c8864 | NEURON | 2,708 | 133 | TITLE na3
: Na current
: from Jeff M.
: ---------- modified -------M.Migliore may97
NEURON {
SUFFIX na3
USEION na READ ena WRITE ina
RANGE gbar, ar2,ina
GLOBAL minf, hinf, mtau, htau, sinf, taus,qinf, thinf
}
PARAMETER {
gbar = 0.010 (mho/cm2)
tha = -25(mV) : v 1/2 for act
q... |
bb0e643bd06a7b25e5d05e0bae411db2920f8ed824d2b6f9354e40c62018758c | NEURON | 2,731 | 149 | TITLE K-A channel from Klee Ficker and Heinemann
: modified to account for Dax A Current ----------
: M.Migliore Jun 1997
UNITS {
(mA) = (milliamp)
(mV) = (millivolt)
}
INDEPENDENT {t FROM 0 TO 1 WITH 1 (ms)}
PARAMETER {
dt (ms)
v (mV)
ek = -90 (mV) : must be explicitely def. in hoc... |
3b25e465ed8ed16894196d94460c2167a834445729269e0e43dee935c6963782 | NEURON | 2,737 | 141 | TITLE Voltage-gated potassium channel from Kv3 subunits
COMMENT
Voltage-gated potassium channel with high threshold and fast activation/deactivation kinetics
KINETIC SCHEME: Hodgkin-Huxley (n^4)
n'= alpha * (1-n) - betha * n
g(v) = gbar * n^4 * ( v-ek )
The rate constants of activation (alpha) and deactivat... |
96f004b77a3a0636428a11feb194f51d91ad5e974bdebe50c154a138f81fbec7 | NEURON | 2,739 | 122 | TITLE hh2.mod sodium, potassium, and leak channels
COMMENT
This is an adjusted Hodgkin-Huxley treatment for sodium,
potassium, and leakage channels.
Membrane voltage is in absolute mV and has been reversed in polarity
from the original HH convention and shifted to reflect a resting potential
of -65 mV.
Re... |
61b4592839f26dd0f6fb861a76b5a8e106e91aba61ab1ee377756e5546bfd907 | NEURON | 2,746 | 113 | TITLE AMPA and NMDA receptor with presynaptic short-term plasticity
COMMENT
AMPA and NMDA receptor conductance using a dual-exponential profile
presynaptic short-term plasticity based on Fuhrmann et al. 2002
Implemented by Srikanth Ramaswamy, Blue Brain Project, July 2009
GUY: Removed plasticity and depression
END... |
893a93ffede4f7a0671fb0a9f06481582e9b95d9b20947c768ae62e1282155aa | NEURON | 2,751 | 145 | TITLE K-A channel from Klee Ficker and Heinemann
: modified to account for Dax A Current ----------
: M.Migliore Jun 1997
UNITS {
(mA) = (milliamp)
(mV) = (millivolt)
(mS) = (millisiemens)
}
INDEPENDENT {t FROM 0 TO 1 WITH 1 (ms)}
PARAMETER {
dt (ms)
v (mV)
ek = -90 (mV) : must be e... |
fe2b2e66b2e1adfdaf2384127e69c1a69675bde676b7f9faf399c259a60eabcf | NEURON | 2,764 | 135 | COMMENT
26 Ago 2002 Modification of original channel to allow variable time step
and to correct an initialization error.
Done by Michael Hines(michael.hines@yale.edu) and Ruggero Scorcioni (rscorcio@gmu.edu)
at EU Advance Course in Computational Neuroscience. Obidos, Portugal
ca.mo... |
823ad04e2d28189b7b283e3dc33344f463c0bae9da1e4da611b6988550142edb | NEURON | 2,790 | 138 | TITLE T-calcium channel
UNITS {
(mA) = (milliamp)
(mV) = (millivolt)
(molar) = (1/liter)
(mM) = (millimolar)
FARADAY = 96520 (coul)
R = 8.3134 (joule/degC)
KTOMV = .0853 (mV/degC)
}
NEURON {
SUFFIX cat
USEION ca READ cai,cao
USEION Ca WRITE iCa VALENCE 2
: The T-cur... |
1cdc5ec474f5c2356721f574f07ce72f8b365c21b7bf229bfc3bf3702150fd3f | NEURON | 2,802 | 144 | TITLE Low threshold calcium current Cerebellum Purkinje Cell Model
COMMENT
Kinetics adapted to fit the Cav3.1 Iftinca et al 2006, Temperature dependence of T-type Calcium channel gating, NEUROSCIENCE
Reference: Anwar H, Hong S, De Schutter E (2010) Controlling Ca2+-activated K+ channels with models of Ca2+ buffering... |
90491730159aade3160e22bc2b4881c0ff7627921831c590e7cadf43e559cf40 | NEURON | 2,804 | 145 | TITLE Voltage-gated low threshold potassium current from Kv1 subunits
COMMENT
NEURON implementation of a potassium channel from Kv1.1 subunits
Kinetical scheme: Hodgkin-Huxley m^4, no inactivation
Experimental data taken from:
Human Kv1.1 expressed in xenopus oocytes: Zerr et al., J Neurosci 18, 2842, 2848, ... |
0d9f056de2c9276d11f376de6bb56a007d349aeb5758a2874ca79df091510760 | NEURON | 2,869 | 94 | begintemplate Temperature
external strf, cellList
public init, reset, correct
proc init() {
q10_g_pas = 1.98 // simulations. Passive membrane parameters (Ra, cm, g_pas)
q10_Ra = 0.80 // have no built-in temperature dependence. Instead, they
q10_cm = 0.96 // will be scaled when calling membrane... |
af473182793b1d2d607e348053717eda2e133c373da05aa19cd87dba1b0d188e | NEURON | 2,984 | 101 | //objref midSecX, midSecY, midSecZ
strdef s, result_folder
proc exportLocs_seg(){ localobj savLocs, savDiam, sref
// all segment locs
neuron_section_size = 0
savLocs = new File()
sprint(s,"../../Results/NEURON/locs/locs_all_seg.txt")
savLocs.wopen(s)
forall{ // loop over all sections
sref =... |
3e3d8447ae3fe9d9246e96f70c801f4a449a19e8ec1df0c055982aa82fc5ae95 | NEURON | 3,002 | 139 | obfunc init_cell() {localobj model
if (strcmp($s1, "HL23MN1") == 0){
model = new NeuronTemplate("morphologies/HL23MN1.swc", "HL23MN1")
biophys_HL23MN1(model)
}
if (strcmp($s1, "HL23PN1") == 0){
model = new NeuronTemplate("morphologies/HL23PN1.swc", "HL23PN1")
biophys_HL23PN1(model)
}
if (strcmp($s... |
b84c295ac4bd1d5219d7518bdd9e2d68abfbca5d4c0017303772fb3651105575 | NEURON | 3,056 | 175 | : Vector stream of events
COMMENT
A VecStim is an artificial spiking cell that generates
events at times that are specified in a Vector.
---
AES: This newer version of vecevent.mod was taken from
https://github.com/neuronsimulator/nrn/blob/master/share/examples/nrniv/netcon/vecevent.mod
as of this commit
https://git... |
e76a2b03c738696b35d4963c3b3cecb2a15b6f7efd87a9aacf1bf81ba44611a0 | NEURON | 3,304 | 140 | : $Id: netstim.mod,v 1.1.1.1 2001/01/01 20:30:37 hines Exp $
: modified in such a way that the first event will never be before start
: M.Migliore Dec.2001
: modified in such a way to have the first event at start
: M.Migliore Sep. 2003
NEURON {
POINT_PROCESS NetStims
RANGE y
RANGE interval, number, st... |
1b105182e0c6d5657181a2831510d3c220a7df6ef79fadb9820d3bf865d01426 | NEURON | 3,361 | 126 | TITLE dual-exponential model of NMDA receptors
COMMENT
Classic double-exponential model of NMDAR
Mg++ voltage dependency from Spruston95 -> Woodhull, 1973
Keivan Moradi 2011
--- (and now back to the original exp2syn comments) ---
Two state kinetic scheme synapse described by rise time tau1,
and decay time constant... |
b19b52a5a756cb9793b993af7db893b3e80a10538862a106b66967d5bdebcfb1 | NEURON | 3,362 | 161 | TITLE na3
: Na current
: from Jeff M.
: ---------- modified -------M.Migliore may97
INDEPENDENT {t FROM 0 TO 1 WITH 1 (ms)}
NEURON {
SUFFIX na3
USEION na READ ena WRITE ina
RANGE gbar, ar2, ina, thegna
RANGE minf, hinf, mtau, htau, sinf, taus, tauss
GLOBAL qinf, thinf, mscale, hscale, sscale
}
PARAME... |
da9b6fc63830f1c023e224bce07bc9353f186e5efb2570064d0d885b890b766a | NEURON | 3,430 | 146 |
NEURON {
ARTIFICIAL_CELL mpi_input
RANGE interval, number, start, time_synch
THREADSAFE : if APCount.record uses distinct instances of Vector
}
PARAMETER {
interval = 10 (ms) <1e-9,1e9>: time between spikes (msec)
number = 10 <0,1e9> : number of spikes (independent of noise)
start = 50 (ms) : start of firs... |
f434046317e90e7886e8d0e6eeb0754573f4c332aa961414066a0c7afa1acd27 | NEURON | 3,629 | 154 | TITLE Cerebellum Granule Cell Model
COMMENT
KA channel
Author: E.D'Angelo, T.Nieus, A. Fontana
Last revised: Egidio 3.12.2003
:Suffix from GRC_KA to Kv4_3
ENDCOMMENT
NEURON {
SUFFIX Kv4_3
USEION k READ ek WRITE ik
RANGE gkbar, ik, g, alpha_a, beta_a, alpha_b, beta_b
RANGE Aalpha_a,... |
1a6d5b587758198c9e5dffcf03a25fd66480f360dc1a498e982060ac5a596d4e | NEURON | 3,665 | 122 | begintemplate Location2
public secRef, loc
objref secRef
proc init() {
secRef = new SectionRef()
loc = $1
}
endtemplate Location2
proc read_params(){local THETA, PHI, bPolar localobj params, timing
TMSAMP = 1 // Default value if not specified
SYN_FREQ = 25
SYN_NOISE = 0.5
SYN_WEIGHT = 0.001
SYNC_WEIGH... |
8de17ce279a81448296b0b3dc7c3ed3d6985c55fbc36bd1aa8ae0bcddd486b0e | NEURON | 3,781 | 187 | TITLE Large conductance Ca2+ activated K+ channel mslo
COMMENT
Parameters from Cox et al. (1987) J Gen Physiol 110:257-81 (patch 1).
Current Model Reference: Anwar H, Hong S, De Schutter E (2010) Controlling Ca2+-activated K+ channels with models of Ca2+ buffering in Purkinje cell. Cerebellum*
*Article available as... |
4eaf5cda84bf5874a81e9288d9b456812a2045e6d82c1c5e88a1380fb96497ad | NEURON | 3,832 | 132 | // Author: Alexandre Guet-McCreight
//
// Adapted from:
// Etay Hay 2014
// Dendritic excitability and gain control in recurrent cortical microcircuits (Hay and Segev, 2014, Cerebral Cortex)
//
// Parallel simulation code for microcircuits of human L2/3 neurons
//===============================================... |
5fb74b535fd974bbc9c4e59f69497cd7f8f6c00aa5f939a2b1a78abadf0102a5 | NEURON | 3,864 | 124 | proc GUI(){
E_UNIFORM = 1
xpanel("E-field Type")
xlabel("Choose how extracllular potentials are calculated:")
xradiobutton("Uniform Electric Field", "E_UNIFORM=1",1)
xradiobutton("Realistc Electric Field", "E_UNIFORM=0")
xbutton("Select","E_field_params()")
xpanel()
}
proc E_field_params(){ localobj pwm... |
ffd36b310f7f3fd70d54c0ffb84423f0ad5fb7f8d499e332e2e05fa84ad7c664 | NEURON | 4,278 | 149 | TITLE simple NMDA receptors
: Modified from the original AMPA.mod, M.Migliore Jan 2003
: A weight of 0.0035 gives a peak conductance of 1nS in 0Mg
COMMENT
-----------------------------------------------------------------------------
Simple model for glutamate AMPA receptors
===============================... |
9b93fcd03ed55c5210ce72080ccf1ef72751ade5de077d6b0f5b159372e42ed9 | NEURON | 4,493 | 170 | TITLE Fluctuating conductances
COMMENT
-----------------------------------------------------------------------------
Fluctuating conductance model for synaptic bombardment
======================================================
THEORY
Synaptic bombardment is represented by a stochastic model containing
two flu... |
d7186517e86cd2576ca1fc3e1486ae59bdb8dfacd605e274f812adddb6897c88 | NEURON | 4,508 | 234 | TITLE
COMMENT
ENDCOMMENT
NEURON {
POINT_PROCESS PF_syn
NONSPECIFIC_CURRENT i
RANGE Q10_diff,Q10_channel
RANGE R, g, ic
RANGE Cdur, Erev
RANGE r1FIX, r2, r3,r4,r5,gmax,r1,r6,r6FIX,kB
RANGE tau_1, tau_rec, tau_facil, U
RANGE PRE,T,Tmax,x
RANGE y_read,z_read,u_read
RANGE C,O,D
RANGE diffuse,Trelease,la... |
0b6158c62f6be0dda6c2ac4c3d39f06cc32f39b8a05866257822dc01544f45c5 | NEURON | 4,542 | 206 | TITLE resurgent sodium channel
COMMENT
Neuron implementation of a resurgent sodium channel (with blocking particle)
Based om updated kinetic parameters from Raman and Bean, Biophys.J. 80 (2001) 729
Modified from Khaliq et al., J.Neurosci. 23(2003)4899
by qt-correction of all rate constants
Laboratory for... |
cfd7d3a41ea71e2032e359e0ad809dfad6f56b46a6d2cf71a2d91093d68d726f | NEURON | 4,578 | 203 | TITLE resurgent sodium channel
COMMENT
Neuron implementation of a resurgent sodium channel (with blocking particle)
Based om updated kinetic parameters from Raman and Bean, Biophys.J. 80 (2001) 729
Modified from Khaliq et al., J.Neurosci. 23(2003)4899
by qt-correction of all rate constants
Laboratory for... |
456107a541042f05fce68fe27d8b33ce7678e9445875039c6b4253aa6b9462a5 | NEURON | 4,972 | 94 | TITLE Slow Ca-dependent potassium current
:
: Ca++ dependent K+ current IC responsible for slow AHP
: Differential equations
:
: Model based on a first order kinetic sch... |
2a208d372fe4f899e835929c535ee90e458eb6fef4e2391c6912777cd515a9c7 | NEURON | 5,101 | 170 |
TITLE simple NMDA receptors
COMMENT
-----------------------------------------------------------------------------
Essentially the same as /examples/nrniv/netcon/ampa.mod in the NEURON
distribution - i.e. Alain Destexhe's simple AMPA model - but with
different binding and unbinding rates and with a magnesiu... |
413f398b9c413a9ce2cc326d58841d286f7eff4ce336609d581484e9a601e0cb | NEURON | 5,227 | 212 | : $Id: gabab.mod,v 1.9 2004/06/17 16:04:05 billl Exp $
: Taken from Neymotin 2016 https://doi.org/10.1016/j.neuroscience.2015.12.043 :
COMMENT
-----------------------------------------------------------------------------
Kinetic model of GABA-B receptors
=================================
MODEL OF SECOND-ORDER G-... |
a1047f8570801c9ce0a5d8d6d648709c399169900e0ca83684ec8803bad15b36 | NEURON | 5,450 | 307 | TITLE Gaba mod file only for fitting purpose
COMMENT
Thierry Nieus, unpublished results, please keep reserved.
Variables with suffix "_s" are meant for single IPSC fit, with suffix "_2" for CGP experimental condition
Does not work with variable dt!
ENDCOMMENT
NEURON {
POINT_PROCESS PC_gaba_alpha1
NONSPECIFIC... |
efea4820dff35d37ce2129c1a2ca1bb83da8c33570e4cc7e862f32b485d72bac | NEURON | 5,836 | 281 | begintemplate NeuronTemplate
public init, delete_axon, delete_axon_BPO, insertChannel, distribute, geom_nseg
public set_parameters, locateSites, getLongestBranch, distribute_channels, connect2target
public initRand, indexSections, cell_name, rd1, pA
public all, apical, basal, somatic, axonal, nSecAll, nSecSoma, ... |
3015fb6784ea338e7d54c740de0e214c3e997b6699ea683336b78c5b30f79b4d | NEURON | 6,994 | 238 | proc init() {
realtime = 0
dtsav = dt // Save desired dt value to reset after temporarily changing dt
secondordersav = secondorder // Save desired secondorder value to reset after temporarily changing secondorder
finitialize(v_init) // Call finitialize (since we are replacing the default init proc that calls... |
e6f1388bb344cad347eec7e3dfaa2b72d58d5ff32b351ca7ee6a2a733329e0d7 | NEURON | 7,893 | 167 | module github.com/chroma-core/chroma/go
go 1.23.0
toolchain go1.23.10
require (
ariga.io/atlas-provider-gorm v0.3.1
github.com/DATA-DOG/go-sqlmock v1.5.2
github.com/aws/aws-sdk-go-v2 v1.36.3
github.com/aws/aws-sdk-go-v2/config v1.28.6
github.com/aws/aws-sdk-go-v2/credentials v1.17.47
github.com/aws/aws-sdk-go-... |
702602c8910cc92718fb926342356ef642245b6426a8b6cdc9caa1bdafcce1cf | NEURON | 8,872 | 373 | : Calcium ion accumulation with endogenous buffers, DCM and pump
COMMENT
The basic code of Example 9.8 and Example 9.9 from NEURON book was adapted as:
1) Extended using parameters from Schmidt et al. 2003.
2) Pump rate was tuned according to data from Maeda et al. 1999
3) DCM was introduced and tuned to approximate... |
d657da0adcbe1d13eee195ac16961ecbb3a306daec3ca646d63b4fdac9ee24a4 | NEURON | 10,761 | 282 | /* Adapted from interpxyz.hoc:
* $Id: interpxyz.hoc,v 1.2 2005/09/10 23:02:15 ted Exp $
* 2018/05/20 Modified by Aman Aberra
* AUTHOR: Aman Aberra, Duke University
* CONTACT: aman.aberra@duke.edu
*/
// original data, irregularly spaced
objref xx, yy, zz, length
// interpolated data, spaced at regular intervals
objref ... |
bb74e89356d48c4cba4eaabda18c4ad81704936b604be5af39232b65e97a9451 | NEURON | 12,058 | 477 | /*
Created by BluePyOpt(1.5.3) at 2020-05-02 08:46:08.997716
*/
{load_file("stdrun.hoc")}
{load_file("import3d.hoc")}
/*
* Check that global parameters are the same as with the optimization
*/
proc check_parameter(/* name, expected_value, value */){
strdef error
if($2 != $3){
sprint(error, "Parameter %s has d... |
6820d44163b5d23d747ddd5e12cee622b01c9e1f015e0f327c83f20de18b1985 | NEURON | 12,102 | 477 | /*
Created by BluePyOpt(1.5.3) at 2020-05-02 08:46:08.997716
*/
{load_file("stdrun.hoc")}
{load_file("import3d.hoc")}
/*
* Check that global parameters are the same as with the optimization
*/
proc check_parameter(/* name, expected_value, value */){
strdef error
if($2 != $3){
sprint(error, "Parameter %s has d... |
a89a18a733535e7b308df103f33232dd46878bbed2026d54427a3c2a14f97d21 | NEURON | 14,467 | 391 | //========================================================================================
//============================== position related functions ==============================
//========================================================================================
proc rotateZ(){ local i
c = cos($1)
s = sin(... |
17e6a9619c78fc889ab56bb85bb532cdba63ff0fad3bfcd12e12c2db59ca75b3 | NEURON | 200,000 | 3,403 | // ----------------------------------------------------------------------------
// morpho.hoc
// stand-alone morphology file
//
// 2007-06-17, Christoph Schmidt-Hieber, University of Freiburg
//
// accompanies the publication:
// Schmidt-Hieber C, Jonas P, Bischofberger J (2007)
// Subthreshold Dendritic Signal Process... |
82381e77377ce82bda5b6c6476162462c4b29c2da3ea10b9bcbc692b4addb02b | NEURON | 200,000 | 4,325 | /*
This is a CellBuilder-like file written for the simulator NEURON
by an automatic procedure "neuron_tree" part of the TREES package
in MATLAB
copyright 2009 Hermann Cuntz
*/
begintemplate GC7
proc celldef() {
topol()
subsets()
geom()
biophys()
geom_nseg()
}
public soma
public adendGCL
public adendIML
pub... |
c59c49d6ba9edda3c1456acd25ae6499e6ce105ad2f24fc32b94985432acffcb | Perl | 1,507 | 59 | #!/usr/bin/perl -wT
use strict;
use Getopt::Std;
$Getopt::Std::STANDARD_HELP_VERSION = 1;
##########################################################################################
## Script to convert Illumina Manifests files into Intervals.list GATK files ##
## Also works for BED to intervals ##
## david bau... |
99efc34bc77c7f33bae6107f1653420cd6df3b250af23b67e7ed19c9d434bdd5 | Perl | 1,933 | 79 | #!/usr/bin/perl -wT
use strict;
use Getopt::Std;
$Getopt::Std::STANDARD_HELP_VERSION = 1;
##########################################################################################################
## Script to remove genes from an annotated file (tsv format) ##
## david baux 11/2015 ##
## david.baux@ins... |
6fb2d3a5cf7dcab8a032b27824d2ca2217c92c5012406a18f71a14df95099f07 | Perl | 1,936 | 91 | #!/usr/bin/env perl
use POSIX qw/WEXITSTATUS/;
my $vtag = "v[0-9]*";
sub git {
my $args = shift;
my $output = `git $args 2>&1`;
my $rc = WEXITSTATUS($?);
die "git command '$args' returned $rc. output was '$output'" if $rc;
chomp $output;
return $output;
}
sub is_git_repo {
eval { git("st... |
ff9d79f0bd3b66aaebeeb0f5b45d657f3e195da816863e051d2fb3513d4ec01f | Perl | 1,941 | 74 | #!/usr/bin/perl -wT
use strict;
use Getopt::Std;
$Getopt::Std::STANDARD_HELP_VERSION = 1;
##########################################################################################################
## Script to mark genes from an annotated file (tsv format) ##
## david baux 10/2016 ... |
071e3ab1cc5441c28baee0452e8b58c3b9aee9c5117855b9555201395e338bbe | Perl | 2,401 | 101 | #!/usr/bin/perl -wT
use strict;
use Getopt::Std;
$Getopt::Std::STANDARD_HELP_VERSION = 1;
##########################################################################################################
## Script to remove genes from an annotated file (tsv format) ##
## david baux 11/2015 ##
## david.baux@ins... |
3d93b90d5857de6628982a81407ce30080bb42ee28c2a4136e9972303c6916fd | Perl | 3,458 | 121 | #!/usr/bin/perl -wT
use strict;
use Getopt::Std;
$Getopt::Std::STANDARD_HELP_VERSION = 1;
############################################################################################################
## Script to put a barcode resuming genotypes in an annotated txt variant file with multiple samples ##
## david baux ... |
a021bf300eef2c8e4452504ad04aa8cc680c5a9fe251b0655c48813ad03371ba | Perl | 3,670 | 94 | #!/usr/bin/perl -wT
use strict;
use Getopt::Std;
$Getopt::Std::STANDARD_HELP_VERSION = 1;
##########################################################################################################
## Script to merge annotation files form cava and annovar, obtained from IURC_VFC_ANNOT_1.2.sh ##
## david baux 11/2015 ... |
e5d28059d721ee2c20989ff9a35424f8059cab9cf2516cbe2595cac7cf4fbfa8 | Perl | 3,732 | 117 | #!/usr/bin/perl -w
use strict;
use Getopt::Std;
$Getopt::Std::STANDARD_HELP_VERSION = 1;
############################################################################################################
## Script to put a LED (Lgm Exome Database) to get occurence of variants in the lab ##
## david baux 08/2016 ... |
a9e09c30e8b78aa271c4f339f313b2e88287ef9af1057c200958af2ec6336970 | Perl | 4,127 | 105 | #!/usr/bin/perl -w
use strict;
use Getopt::Std;
$Getopt::Std::STANDARD_HELP_VERSION = 1;
###################################################################################################
### script to add spidex results to tsv files ###
### david baux 2015 david.baux@inserm.fr ###
###################... |
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