sha256 stringlengths 64 64 | language stringclasses 28
values | size int32 1 491k | lines int32 1 23.2k | content stringlengths 1 200k |
|---|---|---|---|---|
b430a8068a9048d15346bdddb4a1e1e5490a089ff1efb6ea5e028884a95551d4 | Python | 8,535 | 189 | import glob
import pylab as pb
import os
from collections import defaultdict
import numpy as np
import argparse
import pandas as pd
import seaborn
from scipy.stats import mannwhitneyu, ks_2samp, ttest_ind
from tqdm import tqdm
from mp_dip.obci_readmanager.signal_processing.tags.read_tags_source import FileTagsSource... |
cfd3369677dbd305233df1ddf416882bec31f5e6b1145fde1a9c7400da464dd0 | Python | 8,535 | 240 | """
Functions to compute wavelets decomposition of a time series.
The main function for doing wavelet decomposition is `nap.compute_wavelet_transform`
For now, pynapple only implements Morlet wavelets. To check the shape and quality of the wavelets, check out
the function `nap.generate_morlet_filterbank` to plot the ... |
40e5b17f191f309f44db4ba51cddf071e2b8f63a0a082f6f599b53593612d72f | Python | 8,536 | 241 | # --- THIS FILE IS AUTO-GENERATED ---
# Modifications will be overwitten the next time code generation run.
from plotly.basedatatypes import BaseTraceHierarchyType as _BaseTraceHierarchyType
import copy as _copy
class Tickformatstop(_BaseTraceHierarchyType):
_parent_path_str = "contour.colorbar... |
b48bf93db6139466e99d4c165796ed02c39faa3813864ceb805f30a278c151f5 | Python | 8,536 | 241 | # --- THIS FILE IS AUTO-GENERATED ---
# Modifications will be overwitten the next time code generation run.
from plotly.basedatatypes import BaseTraceHierarchyType as _BaseTraceHierarchyType
import copy as _copy
class Tickformatstop(_BaseTraceHierarchyType):
_parent_path_str = "surface.colorbar... |
f4d819b7bb93307cfbd3ff0c8a87e4921d2213f0078785a41b6ff36ff5d3225a | Python | 8,536 | 241 | # --- THIS FILE IS AUTO-GENERATED ---
# Modifications will be overwitten the next time code generation run.
from plotly.basedatatypes import BaseTraceHierarchyType as _BaseTraceHierarchyType
import copy as _copy
class Tickformatstop(_BaseTraceHierarchyType):
_parent_path_str = "heatmap.colorbar... |
bcf064b27d1572355953c7d352e5c5788e9b5281517250bc83729ce64f94c3fb | Python | 8,538 | 204 | """Generation of auxiliary datasets."""
import os
import numpy as np
import tensorflow as tf
from tqdm import tqdm
from angorapy import make_task
from angorapy.agent import PPOAgent
from angorapy.common.const import VISION_WH
def _bytes_feature(value):
"""Returns a bytes_list from a string / byte."""
if isi... |
aee98ff8cf1800682b5dcdb1c0e2ad0ade0e9acfa43bad0cc6793660ac3d1d81 | Python | 8,539 | 209 | # SOURCE: vendored from ShlezingerLab/SubspaceNet @ main
# https://raw.githubusercontent.com/ShlezingerLab/SubspaceNet/main/src/models.py
# https://raw.githubusercontent.com/ShlezingerLab/SubspaceNet/main/src/utils.py
#
# SubspaceNet: model-based deep learning for DoA (direction-of-arrival) estimation.
# "SubspaceNet: ... |
77ddfac9a584cfa9ecb9c9d4e08435ed28c56ce08ca2f95a5a3eda7f97fa3b09 | Python | 8,543 | 244 | from __future__ import annotations
import multiprocessing
import sys
import threading
import time
import pytest
import env
from pybind11_tests import gil_scoped as m
class ExtendedVirtClass(m.VirtClass):
def virtual_func(self):
pass
def pure_virtual_func(self):
pass
def test_callback_py_... |
db79ea592a4afd79b251cb2b777067ecd8c58adfd484beae36f723091c2605ad | Python | 8,543 | 208 | # Copyright (c) 2022 PaddlePaddle Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by app... |
84a30b24cf68321962c925a6ca0f3badaf4b0b01b1188fe413699f26dab45fa2 | Python | 8,544 | 234 | """DMR: Deep Match to Rank for Sequential CTR Prediction.
Lv et al., AAAI 2020 (Alibaba).
Paper: https://ojs.aaai.org/index.php/AAAI/article/view/5346
"Deep Match to Rank Model for Personalized Click-Through Rate Prediction"
Source: https://github.com/lvze92/DMR (TF1 official);
PyTorch port: https://git... |
bf2629bf54d83ac9d3a3405ec7ab28dadaede7e5796bfddbc178c7e7e9890f49 | Python | 8,546 | 254 | from plot_utils_DIM import *
from plot_utils_AUD_RSA import load_rsa_scores_across_layers_across_models
"""
Script for:
1. comparing dimensionality (as computed in dimensionality_all_models.py) vs scores across layers, across all models
"""
### Directories ###
# Logging
date = datetime.datetime.now().strftime("%m%d... |
0111be7c1c26a8899fc9a582228fe1cdab1a696ea07ce3b66e7a1c15737aac2e | Python | 8,547 | 204 | """Pre-release field registrar mechanism (persistence-schema seam S3).
New portable fields land declared ``FieldPolicy.DROP`` under the current
tlspec version and register with :mod:`torchlens._io.prerelease`. This module
proves the three mechanism guarantees:
(a) registered (DROP-declared) fields do NOT persist by d... |
c07fd3d160b9ce2e476719168c4822dc6993d35adea8f95cc5df869a9ab432ce | Python | 8,547 | 230 | """Generalized and folded receptive-field validation tests."""
from __future__ import annotations
from collections.abc import Iterator
from unittest import mock
import pytest
import torch
from support.rf_isolation import preserved_rf_registry
from torch import nn
import torchlens as tl
from torchlens.data_classes.o... |
3ff5b8ce5ca37312ec685ff811122e5579c2315c7f412b4e78693f4462c0b8ac | Python | 8,549 | 241 | # --- THIS FILE IS AUTO-GENERATED ---
# Modifications will be overwitten the next time code generation run.
from plotly.basedatatypes import BaseLayoutHierarchyType as _BaseLayoutHierarchyType
import copy as _copy
class Tickformatstop(_BaseLayoutHierarchyType):
_parent_path_str = "layout.scene.... |
a7a4f0a2244a63b90c8877105dd67f10513299901deff9c0773e26b0de67ddeb | Python | 8,549 | 241 | # --- THIS FILE IS AUTO-GENERATED ---
# Modifications will be overwitten the next time code generation run.
from plotly.basedatatypes import BaseLayoutHierarchyType as _BaseLayoutHierarchyType
import copy as _copy
class Tickformatstop(_BaseLayoutHierarchyType):
_parent_path_str = "layout.scene.... |
a97746fa014bc5afbb23643fa492f7515636dcb256d0b626a9863675fdad5972 | Python | 8,549 | 241 | # --- THIS FILE IS AUTO-GENERATED ---
# Modifications will be overwitten the next time code generation run.
from plotly.basedatatypes import BaseLayoutHierarchyType as _BaseLayoutHierarchyType
import copy as _copy
class Tickformatstop(_BaseLayoutHierarchyType):
_parent_path_str = "layout.scene.... |
97ab37aa04bd17587436e27708c81b942b26cf6e978c3b2a4050ace9320cc40b | Python | 8,550 | 256 | #!/usr/bin/env python3
# LICENSE
#
# _This file is Copyright 2018 by the Image Processing and Analysis Group (BioImage Suite Team). Dept. of Radiology & Biomedical Imaging, Yale School of Medicine._
#
# BioImage Suite Web is licensed under the Apache License, Version 2.0 (the "License");
#
# - you may not use this sof... |
cb86a1818a819e352cc8d9f2d847741b5e7eb99ad30d55389eb770d8df5ef037 | Python | 8,550 | 276 | """
Copyright (c) 2022 EPFL-BBP, All rights reserved.
THIS SOFTWARE IS PROVIDED BY THE BLUE BRAIN PROJECT ``AS IS''
AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO,
THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE BLUE BRAIN PROJE... |
0830303cb18d3ec638556125bdd6802bf8916e64158bf670e43574816fa281b8 | Python | 8,551 | 241 | # --- THIS FILE IS AUTO-GENERATED ---
# Modifications will be overwitten the next time code generation run.
from plotly.basedatatypes import BaseTraceHierarchyType as _BaseTraceHierarchyType
import copy as _copy
class Tickformatstop(_BaseTraceHierarchyType):
_parent_path_str = "bar.marker.color... |
3be11eeec59b9ac39f84ca18b3a014a99f5bc1ed4dd8a3e59badb106bb7798ce | Python | 8,551 | 236 | '''
a pytorch lightning data module based dataloader, for train/val/test dataset prepare.
'''
# %%
import matplotlib.pylab as plt
from torchvision.transforms import (
Compose,
Lambda,
RandomCrop,
Resize,
RandomHorizontalFlip,
)
from pytorchvideo.transforms import (
ApplyTransformToKey,
No... |
51e3958bbb04fb423ffe352783ec2161a0cc87e80e7d324e92aa3d45d702d6b3 | Python | 8,551 | 210 | #!/usr/bin/env python3
"""
Diagnostic J verification — permutation null + bootstrap CI on the
two-model ensemble for AD-vs-HC.
Observed: LOO BA 0.810, pooled-LOCO BA 0.751.
Tests:
1. Permutation null (global label shuffle, 500 iterations):
p(null LOO BA >= observed), p(null LOCO BA >= observed)
2. Bootstrap ... |
715bfe027c65aba674e7acf2c491c7ba349f421d03a20f7972a9d739bd0e44fb | Python | 8,551 | 241 | # --- THIS FILE IS AUTO-GENERATED ---
# Modifications will be overwitten the next time code generation run.
from plotly.basedatatypes import BaseTraceHierarchyType as _BaseTraceHierarchyType
import copy as _copy
class Tickformatstop(_BaseTraceHierarchyType):
_parent_path_str = "streamtube.color... |
9d3acf2253a6b6313dcd9fac8c85dcaa55cb4d2aeabe3fc26436bc292d36c4b2 | Python | 8,551 | 241 | # --- THIS FILE IS AUTO-GENERATED ---
# Modifications will be overwitten the next time code generation run.
from plotly.basedatatypes import BaseTraceHierarchyType as _BaseTraceHierarchyType
import copy as _copy
class Tickformatstop(_BaseTraceHierarchyType):
_parent_path_str = "isosurface.color... |
c74ddc626daa3c8f2c89d120359d4ebb76ce317e33c9fd69148089a15e95aab7 | Python | 8,551 | 241 | # --- THIS FILE IS AUTO-GENERATED ---
# Modifications will be overwitten the next time code generation run.
from plotly.basedatatypes import BaseTraceHierarchyType as _BaseTraceHierarchyType
import copy as _copy
class Tickformatstop(_BaseTraceHierarchyType):
_parent_path_str = "densitymap.color... |
e27a48b225c7b928f010bd7a25c8199e9b83ae226676c4a0868868fb013c5a00 | Python | 8,551 | 239 | import math
from typing import Iterable, List, Optional, Tuple, cast
import torch
import torch.nn as nn
from timm.layers.pos_embed import resample_abs_pos_embed
from timm.models import _manipulate
from timm.models.vision_transformer import VisionTransformer
from torch import Tensor, jit
from torch.nn import LayerNorm,... |
fbeedfbdfaac6ac2e87e9c6373c7daa5f2e8dfe601f774f287c45765dc99540b | Python | 8,551 | 241 | # --- THIS FILE IS AUTO-GENERATED ---
# Modifications will be overwitten the next time code generation run.
from plotly.basedatatypes import BaseTraceHierarchyType as _BaseTraceHierarchyType
import copy as _copy
class Tickformatstop(_BaseTraceHierarchyType):
_parent_path_str = "choropleth.color... |
50e4820ff47e7ebede464ca905ee1f64c44331b62011df861b548da34f617a1c | Python | 8,552 | 239 | """
The arena and its spatial boundaries.
Defines the experimental space the agents move in, its geometry and dimensions,
and the border objects that constrain them.
"""
from __future__ import annotations
from typing import TYPE_CHECKING, Any
import agentpy
import numpy as np
import param
from shapely.geometry import... |
bef92b2360dbe69fdabf09742bcf6179cfb38a6825cf4b0695bcca366d1e7758 | Python | 8,552 | 216 | """
This script takes LD matrices and simulates summary statistics for multiple populations. Requires 2 populations, can take up to 4.
"""
import argparse
from contextlib import ExitStack
import numpy as np
import scipy.stats as stats
import os
class Main():
def __init__(self):
self.ld = []
self.ld_matrices... |
919c07babab4fed1e814c6602fb13dffaca6e8459f9e590b86a037302b333290 | Python | 8,553 | 231 | """A PEP 517 interface to setuptools
Previously, when a user or a command line tool (let's call it a "frontend")
needed to make a request of setuptools to take a certain action, for
example, generating a list of installation requirements, the frontend would
would call "setup.py egg_info" or "setup.py bdist_wheel" on t... |
ba64514696ac73a0d07a2ef06f108243f1cb83cbc242689ad5f1687a95049d12 | Python | 8,553 | 232 | """Optional smoke coverage for the technical-preview Paddle backend."""
from __future__ import annotations
import pytest
paddle = pytest.importorskip("paddle")
import torchlens as tl # noqa: E402
from torchlens.backends import BackendUnsupportedError # noqa: E402
pytestmark = pytest.mark.backend_paddle
def _in... |
f1c527c06e4549523d4d57eab99f73fe4bd9233fbc5e7e98aef971568539b268 | Python | 8,554 | 170 | """Состояния агентов как struct-of-arrays с переиспользованием слотов.
Смерть необратима: слот освобождается, геном исчезает. Никакого респавна.
"""
import numpy as np
from .config import N_MEM
from .brain import Brains
class Population:
def __init__(self, cfg, rng, world, ancestor=None):
self.ancestor =... |
2687f8279fe323bd74f00ed655ae921e03b644cf757b9a10b494b987e576e9ef | Python | 8,556 | 241 | # --- THIS FILE IS AUTO-GENERATED ---
# Modifications will be overwitten the next time code generation run.
from plotly.basedatatypes import BaseTraceHierarchyType as _BaseTraceHierarchyType
import copy as _copy
class Tickformatstop(_BaseTraceHierarchyType):
_parent_path_str = "histogram2d.colo... |
ee2a26fbfb9c4aebe10bd33fce3356af3540b9b940a9d37e6fdb1f53270f059b | Python | 8,556 | 241 | # --- THIS FILE IS AUTO-GENERATED ---
# Modifications will be overwitten the next time code generation run.
from plotly.basedatatypes import BaseTraceHierarchyType as _BaseTraceHierarchyType
import copy as _copy
class Tickformatstop(_BaseTraceHierarchyType):
_parent_path_str = "indicator.gauge.... |
bf8816e2dede85563c77c313c9afda05c16cfa7a8381005620da239e29bf1371 | Python | 8,558 | 215 | import os
import json
from pathlib import Path
from tempfile import TemporaryDirectory
import numpy as np
from scipy.special import logit
from tns.astrocyte.grower import AstrocyteGrower
from morph_tool import diff
_path = Path(__file__).parent / 'data'
def _parameters():
return {
"basal": {
... |
2a7424bc85aeb8b78fd1630e07f5303c54b554a9d9317761ecd1aae701f2c4dc | Python | 8,559 | 232 | """A06 capture-options truth: ``stop_after`` wired through the halt engine.
WALKTHROUGH list-A row 10 (third clause): ``stop_after=`` was a universal
silent no-op whose docstring claimed pluck support ("validated"), while the
trace path raised ``NotImplementedError`` and pluck accepted-and-ignored it.
The wired semant... |
4b0b6969afcc8e5d95a2de71ce77061882d2b0c0653b4c8ccc3f867d5626b9e6 | Python | 8,559 | 241 | # --- THIS FILE IS AUTO-GENERATED ---
# Modifications will be overwitten the next time code generation run.
from plotly.basedatatypes import BaseLayoutHierarchyType as _BaseLayoutHierarchyType
import copy as _copy
class Tickformatstop(_BaseLayoutHierarchyType):
_parent_path_str = "layout.ternar... |
c72a2b5376f069f1f2d248b7fdb174572cdf521c721e93948fc2cf60c58bca4e | Python | 8,559 | 241 | # --- THIS FILE IS AUTO-GENERATED ---
# Modifications will be overwitten the next time code generation run.
from plotly.basedatatypes import BaseLayoutHierarchyType as _BaseLayoutHierarchyType
import copy as _copy
class Tickformatstop(_BaseLayoutHierarchyType):
_parent_path_str = "layout.ternar... |
f1132c1aa81baf4a70516421c7ede0dff668e6e4c7a6a13d69c1c10252669090 | Python | 8,559 | 241 | # --- THIS FILE IS AUTO-GENERATED ---
# Modifications will be overwitten the next time code generation run.
from plotly.basedatatypes import BaseLayoutHierarchyType as _BaseLayoutHierarchyType
import copy as _copy
class Tickformatstop(_BaseLayoutHierarchyType):
_parent_path_str = "layout.ternar... |
28b42a06ee498e18a69af5b572b87c8d89656982917348f3d006e6e79a1fa231 | Python | 8,561 | 210 | # pylint: disable=line-too-long
"""
Utility functions for task
"""
from timeit import default_timer as timer
import torch
from torch.nn import functional as F
from .. import coot_utils
from ..coot_utils import compute_constrastive_loss, compute_cmc_loss
from ..coot_utils import unpack_data
def train_coot(config, bas... |
53223ee7ad7f99788c9fd887727d0a2a59fb7eaa4f179ddf8d55804166bb8f3a | Python | 8,561 | 241 | # --- THIS FILE IS AUTO-GENERATED ---
# Modifications will be overwitten the next time code generation run.
from plotly.basedatatypes import BaseTraceHierarchyType as _BaseTraceHierarchyType
import copy as _copy
class Tickformatstop(_BaseTraceHierarchyType):
_parent_path_str = "splom.marker.col... |
f1dc3dc7d7869bfdfc669c09e40172631bd6987557261b7937f8c87734b29236 | Python | 8,561 | 241 | # --- THIS FILE IS AUTO-GENERATED ---
# Modifications will be overwitten the next time code generation run.
from plotly.basedatatypes import BaseTraceHierarchyType as _BaseTraceHierarchyType
import copy as _copy
class Tickformatstop(_BaseTraceHierarchyType):
_parent_path_str = "parcats.line.col... |
f8a98b6d458ec8a662161442eab61ddff2bf251e11944001570c864e8712e4a8 | Python | 8,563 | 240 | from torch import nn
import torch
from .utils import unsorted_segment_sum
def initialise_weights(model: nn.Module):
"""Initiallises the weights of a custom model using the globally set seed.
Usage:
model.apply(initialise_weights)
:param model: Model that is to be initialised
:type model: nn.Modul... |
ebb17ac671ac32ef24a5718d18af9384efaaeb786a258d4340fc9e88fa94fc32 | Python | 8,564 | 227 | # coding=utf-8
# Copyright 2024 The Google Research Authors.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicab... |
07fd10cc0cdc89088e0c3aec1cd39c66591b64408ab6fe0ffbd03f43e3adbad8 | Python | 8,566 | 241 | # --- THIS FILE IS AUTO-GENERATED ---
# Modifications will be overwitten the next time code generation run.
from plotly.basedatatypes import BaseTraceHierarchyType as _BaseTraceHierarchyType
import copy as _copy
class Tickformatstop(_BaseTraceHierarchyType):
_parent_path_str = "quiver.marker.co... |
47f578a23274f190cdfad165593c62fad72943cb2a78414b22a61e86337c0af7 | Python | 8,566 | 221 | import torch
from torch import nn
import dgl.function as fn
from dgl.nn.functional import edge_softmax
from dgl.utils import expand_as_pair
from graphmae.utils import create_activation
class DotGAT(nn.Module):
def __init__(self,
in_dim,
num_hidden,
out_dim,
... |
61657025e594c7568dffc11066eda292c6c6394ea8db8b5cfb5f4d369e0c61e6 | Python | 8,566 | 241 | # --- THIS FILE IS AUTO-GENERATED ---
# Modifications will be overwitten the next time code generation run.
from plotly.basedatatypes import BaseTraceHierarchyType as _BaseTraceHierarchyType
import copy as _copy
class Tickformatstop(_BaseTraceHierarchyType):
_parent_path_str = "funnel.marker.co... |
a3d26a998e3a268ecf83e7ffbeb8c0e61c6365525932c3c035908453000d1ce1 | Python | 8,566 | 241 | # --- THIS FILE IS AUTO-GENERATED ---
# Modifications will be overwitten the next time code generation run.
from plotly.basedatatypes import BaseTraceHierarchyType as _BaseTraceHierarchyType
import copy as _copy
class Tickformatstop(_BaseTraceHierarchyType):
_parent_path_str = "icicle.marker.co... |
ae2c885d6b73d4c652b9bd79622286f2bf2af3632a16f846a215ee2cb6278bed | Python | 8,566 | 241 | # --- THIS FILE IS AUTO-GENERATED ---
# Modifications will be overwitten the next time code generation run.
from plotly.basedatatypes import BaseTraceHierarchyType as _BaseTraceHierarchyType
import copy as _copy
class Tickformatstop(_BaseTraceHierarchyType):
_parent_path_str = "choroplethmap.co... |
c47e585648f2a2de65ba669e022b5a834fad6efbc1475c5e44a555cc3bb87908 | Python | 8,566 | 241 | # --- THIS FILE IS AUTO-GENERATED ---
# Modifications will be overwitten the next time code generation run.
from plotly.basedatatypes import BaseTraceHierarchyType as _BaseTraceHierarchyType
import copy as _copy
class Tickformatstop(_BaseTraceHierarchyType):
_parent_path_str = "contourcarpet.co... |
0488f1e5a7f26b79d0374e257867eda7557221d1e7f78e7e7bbb7e23eb2b41db | Python | 8,568 | 229 | import pytorch_lightning as pl
import torch
from survival_plus_x.models.cox_lightning import CoxHead
from survival_plus_x.models.cox_lightning import metrics_from_step_outputs as cox_metrics
from survival_plus_x.models.lognormal import LognormalHead
from survival_plus_x.models.lognormal import metrics_from_step_outpu... |
56e0b525784a59035ffe3a75294360ba2965ad8a5fc5845c9a9db113e5350187 | Python | 8,569 | 193 | """F32 folded rider: listA rows 17/21 evidence at REAL HF causal-LM tier.
Both rows shipped with toy-only evidence and the excuse "real-model runnable
saves blocked by row 2 Cache defect". FIX-A (lane A05) landed, so a runnable
save of a real HF causal-LM works; this file upgrades the evidence:
* Row 17 (weight-free ... |
61dd6750a969d91995a8607ba18f35cfcd915f3dc976ff1cb5a6da58f429752f | Python | 8,569 | 254 | # -*- coding: utf-8 -*-
#
# samtools documentation build configuration file, created by
# sphinx-quickstart on Wed Aug 12 14:43:42 2009.
#
# This file is execfile()d with the current directory set to its containing dir.
#
# Note that not all possible configuration values are present in this
# autogenerated file.
#
# Al... |
053c3ada537969e12f745b2524dbbdb7eff0f7aa8d27464b85ab105f6f10af34 | Python | 8,571 | 241 | # --- THIS FILE IS AUTO-GENERATED ---
# Modifications will be overwitten the next time code generation run.
from plotly.basedatatypes import BaseTraceHierarchyType as _BaseTraceHierarchyType
import copy as _copy
class Tickformatstop(_BaseTraceHierarchyType):
_parent_path_str = "parcoords.line.c... |
108711bad7002c0471c1266439afe7f0fae624396b9e7d8748c1922b842d7131 | Python | 8,571 | 241 | # --- THIS FILE IS AUTO-GENERATED ---
# Modifications will be overwitten the next time code generation run.
from plotly.basedatatypes import BaseTraceHierarchyType as _BaseTraceHierarchyType
import copy as _copy
class Tickformatstop(_BaseTraceHierarchyType):
_parent_path_str = "scatter.marker.c... |
369a1e8e357424114f88f5d94d5eddc98fc9f44258c4dbb7cc27576c2932f837 | Python | 8,571 | 241 | # --- THIS FILE IS AUTO-GENERATED ---
# Modifications will be overwitten the next time code generation run.
from plotly.basedatatypes import BaseTraceHierarchyType as _BaseTraceHierarchyType
import copy as _copy
class Tickformatstop(_BaseTraceHierarchyType):
_parent_path_str = "scatter3d.line.c... |
c637cc2676a5847c41791d30917d5d0c76eb4f0f652c7f5a51dbbb29ac8690a5 | Python | 8,571 | 241 | # --- THIS FILE IS AUTO-GENERATED ---
# Modifications will be overwitten the next time code generation run.
from plotly.basedatatypes import BaseTraceHierarchyType as _BaseTraceHierarchyType
import copy as _copy
class Tickformatstop(_BaseTraceHierarchyType):
_parent_path_str = "treemap.marker.c... |
d828364c8735bf020fd45f7e8b962d3a32562d63c2411ac0c43f329d61b01a0a | Python | 8,571 | 249 | """Tests for the logit-lens appliance and the language_model_head recipe."""
from __future__ import annotations
import pytest
import torch
from torch import nn
import torchlens as tl
from torchlens.semantic import LogitLensError, logit_lens
from torchlens.utils._torch_compat import HAS_RMSNORM_MODULE
_requires_rmsn... |
139e203aad4e6c3fe4756f7da30e10bac8d92a3499cad19e93c54248c5e0ca4b | Python | 8,572 | 204 | """
This module define the data factory
"""
import logging
import torch
import pandas as pd
import collections
from datasets_pre_processing.classification_per_prot_dataset import (
ClassificationPerProtDataset,
)
from datasets_pre_processing.classification_per_prot_GO_term import (
ClassificationPerProtGOTerm,
... |
2b3d69b02804e889c2d2b84c48d84a6bd957f18a5952006a13a149b563cb9758 | Python | 8,572 | 211 | from __future__ import annotations
import copy
import torch
from pytorch_lightning import LightningModule
from timm.models.vision_transformer import vit_small_patch16_224
from torch import Tensor
from torch.optim import AdamW
from lightly.loss import CAPILoss
from lightly.models import utils
from lightly.models.modu... |
2e8304b1c080c672c92e92a22ccf6653173f89d528d45dca9414456e01f325a1 | Python | 8,572 | 239 | import locale
import dateparser
import gc
from camelot.utils import split_textline
locale.setlocale(locale.LC_ALL, 'en_US.UTF-8')
try:
from local_extractor.utils import common_utils
from local_extractor.utils.table_concatenation import concatenate_tables
from local_extractor.states.state_utils import KA_... |
6004f94977ea0f5d251bff03593df6e0e759ee39c1f74f0073c81469a1f8ba2c | Python | 8,573 | 204 | """Written by @Jinerhal, adapted by @Xiaojieqiu.
"""
from typing import List
import cv2
import numpy as np
from anndata import AnnData
from ..configuration import SKM
from ..logging import logger_manager as lm
from .contour import *
from .utils import *
@SKM.check_adata_is_type(SKM.ADATA_UMI_TYPE)
def get_borderli... |
97f7431c688ec63f125696cf9410c0db3dfb2d644a2fd9501bf9e5ed5bfb85d0 | Python | 8,573 | 207 | #!/usr/bin/env python3
"""
Dx AH — lean 10-feature tool variant.
Drop the 5 most redundant features identified in Dx AF feature ablation
(features whose removal had ΔAUC ≥ -0.005):
- DFA (ΔAUC +0.003 when dropped)
- I_R (ΔAUC +0.001)
- dPLI alpha global (ΔAUC +0.001)
- org (ΔAUC -0.002)
- iPLV alpha global (... |
5945ac274f854c68a15d8abd9bcfb83ff54abfee2574c7fdd158e9c2e0c7bf16 | Python | 8,574 | 233 | from . import multiprocess_util as mu
from . import math_util as ma
from . import io_util as io
import numpy as np
import traceback
from scipy.stats import rankdata
def main(n_cpus, data, affine, header, norm, brain_mask, output_name, six_f, reho):
# Determine n_items and n_cpus
n_items, n_cpus, dn = ... |
6eb3efa203f63f4b91b9ca2a45e16a2af30aa0e02df920ef6ebf983bfb0c55cb | Python | 8,574 | 241 | # --- THIS FILE IS AUTO-GENERATED ---
# Modifications will be overwitten the next time code generation run.
from plotly.basedatatypes import BaseLayoutHierarchyType as _BaseLayoutHierarchyType
import copy as _copy
class Tickformatstop(_BaseLayoutHierarchyType):
_parent_path_str = "layout.polar.... |
8b68c573417ec739b3b5360f2d64a60a84332829a1a9f61eb71a1f65bc142e10 | Python | 8,574 | 202 | #!/usr/bin/env python3
"""
Dx AB — investigate the wide bootstrap CI lower bounds in Dx AA.
The Dx AA verification produced AUC = 0.956 [0.710, 0.980]. The lower
bound 0.710 is uncomfortably wide. Investigate:
1. Distribution shape of bootstrap AUC values: bimodal (with a
few "unlucky" resamples driving the ta... |
0ae25eda971f2e1c7673cbdc4cc8903d433392f7bc35b1fff81b741cb4114794 | Python | 8,575 | 230 | # Copyright 2021 DeepMind Technologies Limited
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agr... |
d98a172fdf99fedf35de5512cb0af61e218827f63dd330e857668812d9225432 | Python | 8,576 | 241 | # --- THIS FILE IS AUTO-GENERATED ---
# Modifications will be overwitten the next time code generation run.
from plotly.basedatatypes import BaseTraceHierarchyType as _BaseTraceHierarchyType
import copy as _copy
class Tickformatstop(_BaseTraceHierarchyType):
_parent_path_str = "barpolar.marker.... |
db2b45d563ebb86d3f7e36f04b5702be441934d55783bf6e64ae8684b4fd5c0b | Python | 8,576 | 241 | # --- THIS FILE IS AUTO-GENERATED ---
# Modifications will be overwitten the next time code generation run.
from plotly.basedatatypes import BaseTraceHierarchyType as _BaseTraceHierarchyType
import copy as _copy
class Tickformatstop(_BaseTraceHierarchyType):
_parent_path_str = "sunburst.marker.... |
830bf0ce3ac731a55313c4d045c9fe8792c7e615da93a33f4b0c0db2a5654969 | Python | 8,577 | 262 | from datetime import datetime
import torch
import numpy as np
from modular_splicing.utils.io import load_model, save_model
from modular_splicing.utils.construct import construct
from modular_splicing.evaluation.evaluation_criterion import (
evaluation_criteria_specs,
)
from modular_splicing.evaluation.run_evalua... |
a9d1f06070efe479d2ce42381ef09773ec9a035f38ccd9d1c8f256d37529b3ec | Python | 8,577 | 192 | import cc3d
import numpy as np
import SimpleITK as sitk
from collections import OrderedDict
from radiomics import featureextractor, imageoperations
import csv
import tifffile as tiff
from tic_toc import TicTocGenerator, tic, toc
import ray
import sys
import getopt
@ray.remote
def split_volume(image, mask,... |
b2852888fb2c8f897e05504a56ef595c9bef5f3bb25d79a066205cc8a9c1ed01 | Python | 8,578 | 224 | #!/usr/bin/env python
import codecs
import os
import re
import sys
import tarfile
import threading
import unicodedata
import urllib
from glob import glob
from multiprocessing.pool import ThreadPool
from os import makedirs, path
import pandas
from bs4 import BeautifulSoup
from tensorflow.python.platform import gfile
fr... |
20c43c2734eec6384d07ff3c9b13a1e2b3e8af1b0aa5a7495b668f85c233f7a2 | Python | 8,579 | 241 | # --- THIS FILE IS AUTO-GENERATED ---
# Modifications will be overwitten the next time code generation run.
from plotly.basedatatypes import BaseLayoutHierarchyType as _BaseLayoutHierarchyType
import copy as _copy
class Tickformatstop(_BaseLayoutHierarchyType):
_parent_path_str = "layout.polar.... |
58ef5a7640edb757494b57169af8bbb2251d09c048d739edc48533ae0ba028f4 | Python | 8,580 | 296 | from __future__ import annotations
import contextlib
import os
import string
import subprocess
import sys
import tarfile
import zipfile
# These tests must be run explicitly
# They require CMake 3.15+ (--install)
DIR = os.path.abspath(os.path.dirname(__file__))
MAIN_DIR = os.path.dirname(os.path.dirname(DIR))
PKGCON... |
2a23d5727af0610eb0a782dbb9611b188479f64261d814ceae68e31349c2fb5a | Python | 8,581 | 241 | # --- THIS FILE IS AUTO-GENERATED ---
# Modifications will be overwitten the next time code generation run.
from plotly.basedatatypes import BaseTraceHierarchyType as _BaseTraceHierarchyType
import copy as _copy
class Tickformatstop(_BaseTraceHierarchyType):
_parent_path_str = "histogram.marker... |
52089090f21777283f4d046fad3d2ac09f78e4944eb2361ea1007b4767def80a | Python | 8,581 | 244 | model = dict(
type='FasterRCNN',
backbone=dict(
type='ResNet',
depth=50,
num_stages=4,
out_indices=(0, 1, 2, 3),
frozen_stages=0,
norm_cfg=dict(type='SyncBN', requires_grad=True),
norm_eval=False,
style='pytorch',
init_cfg=dict(type='Pretra... |
9daa6dd85ffbcace26468668c5dae77f107584a10646c294ca60ac4bf196e29e | Python | 8,581 | 241 | # --- THIS FILE IS AUTO-GENERATED ---
# Modifications will be overwitten the next time code generation run.
from plotly.basedatatypes import BaseTraceHierarchyType as _BaseTraceHierarchyType
import copy as _copy
class Tickformatstop(_BaseTraceHierarchyType):
_parent_path_str = "scattergl.marker... |
c82bc76c515251865226fbaf80b7a0ce91b10825b14cb475691aba4a61d0f101 | Python | 8,581 | 241 | # --- THIS FILE IS AUTO-GENERATED ---
# Modifications will be overwitten the next time code generation run.
from plotly.basedatatypes import BaseTraceHierarchyType as _BaseTraceHierarchyType
import copy as _copy
class Tickformatstop(_BaseTraceHierarchyType):
_parent_path_str = "scatter3d.marker... |
b6183dc26b43e0cf580feee797d894f79fa69ff74b1ec4f8c676726783c72aeb | Python | 8,582 | 253 | #!/usr/bin/env python3
"""
File: evaluate_model_term_importance.py
Created: 2022/05/09
Last Changed:
Author: M.Vochteloo
Copyright (C) 2020 University Medical Center Groningen.
A copy of the BSD 3-Clause "New" or "Revised" License can be found in the
LICENSE file in the root directory of this sour... |
6480d9e2eaa63277b764fffb10f021cfb0a97929007e48bd0aa891bc3d612b05 | Python | 8,583 | 249 | import os
import matplotlib.pyplot as plt
import seaborn as sns
from os.path import join
import sklearn
from sklearn.tree import DecisionTreeClassifier
from tqdm import tqdm
import pandas as pd
import pickle as pkl
import sys
import numpy as np
import pandas as pd
from collections import namedtuple
from sklearn.tree._t... |
096bcc286c24f30f022d51def4b870849905ab798a924ba744801221d07c9132 | Python | 8,584 | 272 | """Internal chunked-forward helper functions for public trace capture."""
from __future__ import annotations
import collections.abc
import time
from typing import Any
from ._deprecations import MISSING
from ._trace_state import TraceState
from .data_classes.trace import Trace
from .fastlog.options import HaltPredica... |
2eb854ab4621bc882036c320c3a1a2a7def29ecbeaee7170561b1b0e277a84a9 | Python | 8,584 | 241 | # --- THIS FILE IS AUTO-GENERATED ---
# Modifications will be overwitten the next time code generation run.
from plotly.basedatatypes import BaseLayoutHierarchyType as _BaseLayoutHierarchyType
import copy as _copy
class Tickformatstop(_BaseLayoutHierarchyType):
_parent_path_str = "layout.colora... |
bea0d2436e11f4c8f6c5433d40896bb09d0b0627df15413b84814a1fb9885806 | Python | 8,585 | 220 | """
Loads and handles the application menu bar
SimplyFire - Customizable analysis of electrophysiology data
Copyright (C) 2022 Megumi Mori
This program comes with ABSOLUTELY NO WARRANTY
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as... |
80e1f1020e92a6786b54f81f09adf930ad60982163e3a43bca576f6fdf21690f | Python | 8,586 | 241 | # --- THIS FILE IS AUTO-GENERATED ---
# Modifications will be overwitten the next time code generation run.
from plotly.basedatatypes import BaseTraceHierarchyType as _BaseTraceHierarchyType
import copy as _copy
class Tickformatstop(_BaseTraceHierarchyType):
_parent_path_str = "scattergeo.marke... |
ae505d13c220a55ef0084cc10c706361c70d9b5847364023131eeb649e9c6275 | Python | 8,586 | 241 | # --- THIS FILE IS AUTO-GENERATED ---
# Modifications will be overwitten the next time code generation run.
from plotly.basedatatypes import BaseTraceHierarchyType as _BaseTraceHierarchyType
import copy as _copy
class Tickformatstop(_BaseTraceHierarchyType):
_parent_path_str = "scattermap.marke... |
02c450ed0d9cc1d9ccc4012ca56201afd646c376319d1f624f8a57b6c7d8ee55 | Python | 8,589 | 253 | """Tests for callable NodeSpec visualization customization."""
from __future__ import annotations
from types import SimpleNamespace
from typing import Any
import pytest
import torch
from torch import nn
import torchlens as tl
from torchlens.data_classes.layer import Layer
from torchlens.experimental.dagua import No... |
4cc5bb2abcb72094909fa0db1ff2dcc9421bc0a76db2d2262180db2826582222 | Python | 8,589 | 263 | """Utility functions for BData."""
from typing import List
import copy
import numpy as np
from .bdata import BData
def vstack(bdata_list, successive=[], metadata_merge='strict', ignore_metadata_description=False):
"""Concatenate datasets vertically.
Currently, `concat_dataset` does not validate the cons... |
0200d188c6e2a67eec96be7f211227b624fbb5c9aa9b769f9defb714b7f2a3a9 | Python | 8,590 | 307 | import ctypes
import fnmatch
import json
import os
import sys
import warnings
import numpy as np
import tifffile
PLAT = sys.platform
if PLAT == "linux2":
PLAT = "linux"
elif PLAT == "cygwin":
PLAT = "win32"
class dotdict(dict):
"""dot.notation access to dictionary attributes"""
__getattr__ = dict.g... |
39206ef37ef0bf27f0f4d0808239c236216b5b6ac703b544d2809701e8038bd5 | Python | 8,591 | 249 | import torch
import torch.nn as nn
import torch.utils.model_zoo as model_zoo
from .custom_modules import SequentialWithArgs, FakeReLU
__all__ = ['ResNet', 'resnet18_openselfsup_transfer', 'resnet34_openselfsup_transfer', 'resnet50_openselfsup_transfer', 'resnet101_openselfsup_transfer',
'resnet152_openselfs... |
41c08dcecb88f75b2742fc7baefd6e11f3f233fa5674bfd9c65663981e01ab45 | Python | 8,591 | 241 | # --- THIS FILE IS AUTO-GENERATED ---
# Modifications will be overwitten the next time code generation run.
from plotly.basedatatypes import BaseTraceHierarchyType as _BaseTraceHierarchyType
import copy as _copy
class Tickformatstop(_BaseTraceHierarchyType):
_parent_path_str = "histogram2dconto... |
4866d8fe04614898fe4e722f2da197f2cbdd9c8f27974d548953c14a2234c96b | Python | 8,593 | 210 | """Faster RCNN default config"""
# pylint: disable=unused-variable,missing-function-docstring,bad-whitespace,missing-class-docstring
from typing import Union, Tuple, Any
from autocfg import dataclass, field
@dataclass
class FasterRCNN:
# Base network name which serves as feature extraction base.
base_network :... |
51ff8cf1e86afa2a4eeca1b561d5950d6932db19d27a067286fb422f035cc71b | Python | 8,596 | 241 | # --- THIS FILE IS AUTO-GENERATED ---
# Modifications will be overwitten the next time code generation run.
from plotly.basedatatypes import BaseTraceHierarchyType as _BaseTraceHierarchyType
import copy as _copy
class Tickformatstop(_BaseTraceHierarchyType):
_parent_path_str = "scatterpolar.mar... |
7bcaa0043fa6da27590379c44b857a3df3bce6ed21f22675ad059b2c8c04fcb9 | Python | 8,596 | 241 | # --- THIS FILE IS AUTO-GENERATED ---
# Modifications will be overwitten the next time code generation run.
from plotly.basedatatypes import BaseTraceHierarchyType as _BaseTraceHierarchyType
import copy as _copy
class Tickformatstop(_BaseTraceHierarchyType):
_parent_path_str = "scattersmith.mar... |
4ed808ebc87b6aa23dda833ee7ec64360d22cf9cde21bf08e36b582c9cf18b6d | Python | 8,597 | 255 | import h5py
import numpy as np
from permacache import permacache, drop_if_equal
import scipy.sparse
from modular_splicing.dataset.additional_data import AdditionalData
from modular_splicing.utils.intron_exon_annotation import to_intron_exon_annotation
from .pipeline import eclip_dataset_with_spliceai_pipeline
from ... |
7cb2ca2023b541f1e9e94f9bd9ed52c256f7d66d5ef10291de2be71aa374a4e3 | Python | 8,597 | 180 | # Copyright (c) 2021, NVIDIA CORPORATION & AFFILIATES. All rights reserved.
#
# Permission is hereby granted, free of charge, to any person obtaining a
# copy of this software and associated documentation files (the "Software"),
# to deal in the Software without restriction, including without limitation
# the rights to... |
c03f2c8f08a3b12e3902a52d287aa28f0c912ad8b4a20db51734fc78c1a7ff50 | Python | 8,600 | 125 | import unittest
from tests.tabulation.nonadiabatic_defect_with_superadiabatic.get_libs import run_slfm, run_eq, get_abs_relerr, get_params, run_inputs_check
from spitfire.chemistry.ctversion import check as cantera_version_check
import numpy as np
if cantera_version_check('atleast', 2, 5, None):
class Test(unitt... |
9abe9e43f7a47a47ec38e3cfcf5595fe02f3f5ba0e3d711522b084f0bc615904 | Python | 8,601 | 241 | # --- THIS FILE IS AUTO-GENERATED ---
# Modifications will be overwitten the next time code generation run.
from plotly.basedatatypes import BaseTraceHierarchyType as _BaseTraceHierarchyType
import copy as _copy
class Tickformatstop(_BaseTraceHierarchyType):
_parent_path_str = "scattercarpet.ma... |
ba690f1ead9e2d2e59c5031511ca96d7568d72f91a7cfb49c3a1d6ad6320810c | Python | 8,602 | 234 | #!/usr/bin/env python
import codecs
import fnmatch
import os
import subprocess
import sys
import tarfile
import unicodedata
import pandas
import progressbar
from sox import Transformer
from tensorflow.python.platform import gfile
from deepspeech_training.util.downloader import maybe_download
SAMPLE_RATE = 16000
de... |
442a18434f6811a78339ee2fb66968e344ed698853f1112a34e9dca026ef2683 | Python | 8,603 | 207 | """Registry-kernel lifecycle, epoch, snapshot, and refusal gates (C01 item 13).
The kernel is PRIVATE plumbing (architecture memo 6.1): these tests exercise
the lifecycle law every typed public door inherits -- register / unregister /
list / info / snapshot, monotone epoch, collision refusal by default,
capability row... |
71755b730ab2a3bad009aa7afd1239f1ee8e5e4494c9e1d22ed2a4a22ac0280f | Python | 8,603 | 227 | """F11 typed-event-ladder gates (collapse memo item 9 / D8).
One ladder serves auto, float levels, and the public schedule: geometric
interior t, strict monotonicity, coalesced no-op stops, byte-identical
endpoints, and the unfrozen auto contract with the band-miss disclosure.
"""
from __future__ import annotations
... |
4a50cabb0344ff0b5026cf64567f408b7293403130e895409953e843b7a93fab | Python | 8,604 | 253 | """Wasserstein distance would be calculated by ot python package, see following:
Rémi Flamary, Nicolas Courty, Alexandre Gramfort, Mokhtar Z. Alaya, Aurélie Boisbunon, Stanislas Chambon, Laetitia Chapel, Adrien Corenflos, Kilian Fatras, Nemo Fournier, Léo Gautheron, Nathalie T.H. Gayraud, Hicham Janati, Alain Rakotoma... |
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