sha256 stringlengths 64 64 | language stringclasses 28
values | size int32 1 491k | lines int32 1 23.2k | content stringlengths 1 200k |
|---|---|---|---|---|
a18c439f3b4c567a082d7860fb84f8839614b3b1444c3c2be21600092b0573c9 | TypeScript | 671 | 27 | import type { HistoryPageSummary } from "@/api/pages";
export const FAKE_PAGE_SUMMARY: HistoryPageSummary = {
id: "page-1",
history_id: "history-1",
title: "My Analysis",
slug: null,
source_invocation_id: null,
published: false,
importable: false,
deleted: false,
latest_revision_id:... |
1d07abf9a529764aa2089d2982d4a02a23ebc6d4190ad2fd536e7bdf84328e03 | TypeScript | 675 | 28 | export const SELECTION_STATES = {
SELECTED: "success",
UNSELECTED: "default",
MIXED: "secondary",
} as const;
export type SelectionState = (typeof SELECTION_STATES)[keyof typeof SELECTION_STATES];
export interface SelectionItem {
id: string;
label: string;
details: string;
isLeaf: boolean;... |
38398b495f533afc76d2feda98df20dcd81c37d9a15188330d2b42843eccc7dc | TypeScript | 683 | 20 | import { mount } from "@vue/test-utils";
import { describe, expect, it } from "vitest";
import WorkflowStepIcon from "./WorkflowStepIcon.vue";
describe("WorkflowStepIcon", () => {
it.each([
["tool", "wrench"],
["data_input", "file"],
["data_collection_input", "folder-open"],
["subw... |
a6302b63b7f1d91087860480d21ae0aaeae03ba9c580cbde2d0c839c30ef8e5f | TypeScript | 688 | 21 | import { describe, expect, it } from "vitest";
import { textValue } from "./rocrate.utils";
describe("textValue", () => {
it("keeps a plain string", () => {
expect(textValue("A crate")).toBe("A crate");
});
it("joins an array of strings and language-tagged values", () => {
expect(textValu... |
b8a40fb02c551214b92284b38436bb55ac75f9aa93e7a0f1cc913a257528f7b6 | TypeScript | 688 | 24 | /// <reference types="vitest" />
import { defineConfig } from "vitest/config";
import react from "@vitejs/plugin-react";
import path from "path";
export default defineConfig({
plugins: [react()],
resolve: {
alias: { "@": path.resolve(__dirname, "./src") },
},
test: {
environment: "jsdom... |
62ffd4f8efeeb89c659d3dc9090028c3fdda385e0f8ead624f03c2431dbd9611 | TypeScript | 697 | 25 | export const DEFAULT_TOOLTIP_HOVER_DELAY_MS = 300;
export const INTERACTIVE_POPOVER_CLOSE_DELAY_MS = 50;
export function useDelayedAction(delayMs: number) {
let timer: ReturnType<typeof setTimeout> | null = null;
return {
schedule: (callback: () => void) => {
if (timer !== null) {
... |
e765bf45d052568d6dbcac0de6d6a2a69b11e11609d8d7ac7ac11842c58c3cc3 | TypeScript | 704 | 16 | /*
* Single declaration of the contract for every icon in this directory.
*
* An icon takes nothing but a class: it draws with `currentColor` and at the
* size its caller gives it, so state colour and dimensions belong to the
* control around it rather than to the glyph.
*
* Named for where the set comes from: n... |
34d82b16bb65f48f19fb8692626143f906641316557f1dd69d3815cf0105dd6a | TypeScript | 712 | 22 | // Type declarations for Vite-specific imports
// Monaco editor workers with ?worker suffix
declare module "monaco-editor/esm/vs/editor/editor.worker?worker" {
const workerConstructor: new () => Worker;
export default workerConstructor;
}
declare module "monaco-editor/esm/vs/language/json/json.worker?worker" ... |
e8b0aa02707e6c875855057d220df67b27aa181ad87f5719c60c6e51df26a90d | TypeScript | 715 | 22 | import { createPinia, setActivePinia } from "pinia";
import { beforeEach, describe, expect, it } from "vitest";
import { usePersistentToggle } from "./persistentToggle";
describe("usePersistentToggle", () => {
beforeEach(() => {
setActivePinia(createPinia());
localStorage.clear();
});
it(... |
12f40245c88d7f5e0f5094e2014ab11c09926fd4074273a752a2c603531354ee | TypeScript | 736 | 20 | /**
* Raised by a provider whose scope could not be loaded at all — the very first
* fetch of an empty cache failed, so there is nothing to render and "No
* results." would be a lie.
*
* Every other failure stays quiet: once a store holds rows, a failing search or
* background refresh still leaves the cached ones... |
ca4e2f2429589479533f3f4f058cad4c7ea750468cafe4ad1dd52c6157aa3453 | TypeScript | 743 | 20 | declare module "@vue/compat" {
import type { AppConfig, ComponentOptions, Plugin } from "vue";
export * from "vue";
export function configureCompat(config: { MODE?: 2 | 3; [key: string]: unknown }): void;
/**
* The compat build's default export keeps the Vue 2 style global API
* (`Vue.use(.... |
35409b8bd02f72b2d4bc548522444f291701ee6c7454fc34aa8e81161777ccf0 | TypeScript | 744 | 22 | import { format } from "date-fns";
/**
* Pick a date-fns format string that fits the span between two timestamps.
* Use this for axis tick labels so a 30-second range doesn't print the date 10
* times and a 6-month range doesn't print the minute.
*/
export function pickTimeFormat(spanMs: number): string {
cons... |
8db2b638c33fc7285e829235c888855692b6e94ec0a84c583372671202ee108b | TypeScript | 755 | 18 | import { mount } from "@vue/test-utils";
import { describe, expect, it } from "vitest";
import VueMultiselect from "vue-multiselect";
import SelectBasic from "./SelectBasic.vue";
describe("SelectBasic", () => {
// The rule builder shows several of these at once, so a fixed id would repeat.
it("gives each sele... |
959ff16f228c45051cc13078e908d39d05f0841ff1c32d5bcad26cdb25600da4 | TypeScript | 760 | 22 | export type ComponentColor = "grey" | "blue" | "green" | "yellow" | "orange" | "red";
export type ComponentSize = "small" | "medium" | "large";
/**
* Basic color variants for components that only support
* color-based styling like alerts, badges, and backgrounds (no outline variants).
*/
export type ColorVariant = ... |
1bac7208ab3a077a4ae860f07b1236ce22e0e9640c45e8080efb7eacb5d44b82 | TypeScript | 764 | 27 | import { defineStore } from "pinia";
import { ref } from "vue";
export interface ExportableItem {
historyId: string;
contentType: "dataset" | "dataset_collection";
contentId: string;
contentName: string;
}
/**
* The item whose "Export to another Galaxy" dialog is open. The dialog is mounted once at t... |
452b14d903b465b9778718b3aef16992004f0a971889e7bf32ad0334f2518b71 | TypeScript | 767 | 24 | import { describe, expect, it, vi } from "vitest";
import { generateId, scrollToBottom } from "./chatUtils";
describe("chatUtils", () => {
describe("generateId", () => {
it("generates unique ids", () => {
const ids = new Set(Array.from({ length: 100 }, () => generateId()));
expect(... |
da3cb62e2b00af294551944bb9dde313be88564b3b3fd86e5a5f67aa58ebdee7 | TypeScript | 770 | 31 | export interface UploadOptionVisibility {
spaceToTab: boolean;
posix: boolean;
deferred: boolean;
autoDecompress: boolean;
}
export const defaultUploadOptionVisibility: UploadOptionVisibility = {
spaceToTab: false,
posix: false,
deferred: false,
autoDecompress: false,
};
export functio... |
4b096527e74bab81dc41967693fe65cd81295e5e7317a72461b28c367fbb398f | TypeScript | 772 | 18 | import { shallowMount } from "@vue/test-utils";
import { describe, expect, it } from "vitest";
import { MARKDOWN_CELL_TYPES } from "@/components/Markdown/directives";
import SectionWrapper from "./SectionWrapper.vue";
describe("SectionWrapper.vue", () => {
it.each(MARKDOWN_CELL_TYPES)("renders the %s cell type",... |
896eac8dbc30edd61d5634ed5cb94a3d266122dad4c1bfe9bf0f5a91232b9b47 | TypeScript | 772 | 25 | import "@testing-library/jest-dom/vitest";
import { afterEach } from "vitest";
import { cleanup } from "@testing-library/react";
/*
* jsdom implements neither of these, and Radix reaches for both: `useSize`
* observes a control's box (the switch does), and its popper measures scroll
* geometry. Stubbed here rather ... |
7abee338e94b0c60bf272d79201ebb13874a232938176dc40bd9c40eaa10e933 | TypeScript | 775 | 22 | import type { Ref, UnwrapRef } from "vue";
import type { AnyUser } from "@/api";
import { useHashedUserId } from "./hashedUserId";
import { useHashedUserId as useHashedUserIdFromStore } from "./hashedUserIdFromUserStore";
import { useUserLocalStorageFromHashId } from "./userLocalStorageFromHashedId";
/**
* Local st... |
dd1162d36c4127ccb052296be8e95e066f11517569ddf4625884f5c8fd66bf08 | TypeScript | 789 | 28 | import { defineStore } from "pinia";
import { computed, ref } from "vue";
/**
* This store allows for pointing scoped stores to other scoped stores
*/
export const useScopePointerStore = defineStore("scopePointerStore", () => {
type FromScopeId = string;
type ToScopeId = string;
const scopePointers = re... |
817726a791ff6d94355e95dd4ee150e21f71e1450e9154e87ed6b5234ea2e0d1 | TypeScript | 795 | 30 | import { watchImmediate } from "@vueuse/core";
import { type Ref, ref, type UnwrapRef } from "vue";
import { syncRefToLocalStorage } from "./persistentRef";
/**
* Local storage composable specific to current user.
* @param key
* @param initialValue
*/
export function useUserLocalStorageFromHashId<T>(
key: str... |
31c2b42ceb44198a827eba8db474faa97491d91ace381b173069249e5a178400 | TypeScript | 796 | 16 | import type { MaybeRefOrGetter } from "@vueuse/core";
import type { Ref } from "vue";
/**
* Reactively filter an array of objects, by comparing `filter` to all `fields`.
* Matches are ordered exact first, then prefix, then other substring matches.
* All parameters can optionally be refs.
* @param array array of ob... |
bd5358d30be319b310949900db87a04705c07bb1fec3f7a295d13d06b545a4f2 | TypeScript | 802 | 18 | /**
* Group membership test, loose like BootstrapVue's: objects match by JSON form, other values by
* string form, so a numeric option still matches a value that came back from the server as a string.
* Stricter than BootstrapVue's: the JSON form depends on key order (`{ a, b }` does not match `{ b, a }`),
* arrays... |
29b04fb3a3c807bb092ecade83ad1fb164b48079385241739f28a5c93b61aa50 | TypeScript | 808 | 28 | // Open popovers that Escape dismisses, most recently opened last, so one key press closes only the top one.
export interface EscapeLayer {
// False while the layer cannot take the key, e.g. behind a modal dialog, so the next one down gets it.
canHandle: () => boolean;
}
const layers: EscapeLayer[] = [];
expo... |
0a3650a91026c7fb2b0e86b47897e223b1771255ea5dd784fc4195df8c0a8836 | TypeScript | 813 | 34 | export interface CellType {
name: string;
content: string;
configure?: boolean;
toggle?: boolean;
}
export interface DatasetLabel {
invocation_id: string;
input?: string;
output?: string;
}
export interface Invocation {
history_id: string;
inputs: Record<string, { label?: string; i... |
700c1e41cac5a9f6e68ad8e46d023479525ef6a0867161b9b2049afe2de2a6aa | TypeScript | 816 | 20 | import { getLocalVue } from "@tests/vitest/helpers";
import { shallowMount } from "@vue/test-utils";
import { describe, expect, it } from "vitest";
import { STANDARD_OBJECT_STORE_TEMPLATE } from "@/components/ConfigTemplates/test_fixtures";
import TemplateSummary from "./TemplateSummary.vue";
import ObjectStoreBadges... |
77447d00e60d286aa1b51fc30ce73ba5e94cfcd890e81260d40b68c0bbe5ba29 | TypeScript | 818 | 38 | import type { DataUri } from "../types";
export const SINGULAR_DATA_URI: DataUri = {
src: "url",
location: "link_to_file",
ext: "txt",
};
export const SINGULAR_FILE_URI: DataUri = {
class: "File",
ext: "txt",
location: "link_to_file",
};
export const SINGULAR_LIST_URI: DataUri = {
class: ... |
8542e6d9a8ee232ac829f39f6697ec556d5e7089d93769322d6b1557e7b11f3a | TypeScript | 820 | 21 | import { createTestingPinia } from "@pinia/testing";
import { setActivePinia } from "pinia";
import { beforeEach, describe, expect, it, vi } from "vitest";
import type { AnyHistory } from "@/api";
import { useHistoryStore } from "@/stores/historyStore";
import { useCollectionCreation } from "./useCollectionCreation";... |
174c231e91bcfe9e2c959379620986075470adae545297325f43420dd05af487 | TypeScript | 822 | 18 | import { getLocalVue } from "@tests/vitest/helpers";
import { mount } from "@vue/test-utils";
import { describe, expect, it } from "vitest";
import FormColor from "./FormColor.vue";
describe("FormColor", () => {
it("renders a small color GFormInput and emits the picked color", async () => {
const wrapper ... |
a507efe35b3c8c4c44e612bb5fc581d83600439a53183931a3a967bfa2b36ab3 | TypeScript | 822 | 17 | export const MY_PANEL_VIEW_ID = "my_panel";
export const MY_PANEL_VIEW_NAME = "My Tools";
export const MY_PANEL_VIEW_DESCRIPTION = "Search all tools and view your favorite tools.";
export const MY_PANEL_VIEW_TYPE = "favorites";
export const FAVORITE_TAG_SECTION_PREFIX = "favorite_tag_";
export const FAVORITE_EDAM_OPERA... |
36652d411689d30fa9515cbd8e6bfb47cc0f3b0d0348103a506e6445bbbb304b | TypeScript | 824 | 23 | import type { HistoryGraphNode } from "./historyGraphMapper";
// State colors resolved lazily from the global `--state-color-*` custom
// properties defined in base.scss.
const stateColors: Record<string, string> = {};
function stateColor(state: string): string {
if (!(state in stateColors)) {
stateColors... |
698bc48b475d930ce31e95f68d8c4462a3fdb90720ba55e38ba31a98b7f5c9f3 | TypeScript | 826 | 23 | import { getLocalVue } from "@tests/vitest/helpers";
import { shallowMount } from "@vue/test-utils";
import { describe, expect, it } from "vitest";
import { STANDARD_OBJECT_STORE_TEMPLATE } from "@/components/ConfigTemplates/test_fixtures";
import TemplateSummaryPopover from "./TemplateSummaryPopover.vue";
const loc... |
3ebaf54f1947785660fe3c9b8e5ed0df0605d0449ca9fd8833ad90191c8a4b3a | TypeScript | 827 | 28 | import { afterEach, describe, expect, it } from "vitest";
import { activeToastHost, registerToastHost, unregisterToastHost } from "./toastHost";
const firstHost = "first-modal";
const secondHost = "second-modal";
afterEach(() => {
unregisterToastHost(firstHost);
unregisterToastHost(secondHost);
});
describe... |
9c4d4f1269b3344c110564357bf754ee0fe9c73d7e802686ee93dc50e0ab03e7 | TypeScript | 828 | 21 | import { mount } from "@vue/test-utils";
import { describe, expect, it, vi } from "vitest";
import IdentifierDisplay from "./IdentifierDisplay.vue";
describe("IdentifierDisplay", () => {
// The rule builder highlights a mapping's columns while the pointer is over it.
it("passes mouseover and mouseout on to th... |
a777e30aa70769d48bd4db642ee64ff5fdbff9689a6475fc846913f894ea96ee | TypeScript | 831 | 31 | /**
* Galaxy Client API
* A client library for the Galaxy API
*/
import { createGalaxyApi, type GalaxyApiClient } from "./client";
import { errorMessageAsString } from "./utils/error";
// Re-export all the types from our type compatibility layer
export * from "./api-types";
// SimpleError class for error handling... |
065ec428e49863a882b0631a3dee7980d4b4b03d214e04aee1331597d87b453e | TypeScript | 841 | 26 | import type { components } from "@/api";
import { GalaxyApi } from "@/api";
import { rethrowSimple } from "@/utils/simple-error";
export type CompositeFileInfo = components["schemas"]["CompositeFileInfo"];
export type DatatypeDetails = components["schemas"]["DatatypeDetails"];
/**
* Get details about a specific data... |
e7685552a5a5c82ed79090c7472755e8cac9c798f3638594bb9941d7cfea979c | TypeScript | 844 | 21 | import { getLocalVue } from "@tests/vitest/helpers";
import { mount } from "@vue/test-utils";
import { describe, expect, it } from "vitest";
import EditableUrl from "./EditableUrl.vue";
describe("EditableUrl", () => {
it("submits the slug when Enter is pressed in the slug input", async () => {
const wrapp... |
d533680f536f0a3891e168c9c6c2455feb843f333f1691772145cddef4f6790d | TypeScript | 848 | 32 | import type { UploadOptionVisibility } from "./uploadOptionVisibility";
const toggleWidths = {
spaceToTab: 84,
posix: 54,
deferred: 82,
autoDecompress: 102,
};
/**
* Returns a table column width that matches visible upload settings toggles.
*/
export function getUploadSettingsColumnWidth(visibility:... |
4c85feebf33a54f4c10971bbbcc0741ddcf4f30452a98e59f7a45a216d787111 | TypeScript | 855 | 35 | import { toRefs } from "@vueuse/core";
import { computed, type Ref } from "vue";
import type { Step } from "@/stores/workflowStepStore";
export function useStepProps(step: Ref<Step>) {
const {
id: stepId,
content_id: contentId,
name,
type,
inputs: stepInputs,
output... |
aacefb4f48d8eb94c81c2cd42ed6584cf03ba4ab965f2c89cda1173208ddbfdd | TypeScript | 872 | 22 | import { getLocalVue } from "@tests/vitest/helpers";
import { mount } from "@vue/test-utils";
import { describe, expect, it } from "vitest";
import ZoomControl from "./ZoomControl.vue";
const localVue = getLocalVue();
describe("ZoomControl", () => {
it("keeps the displayed zoom percentage in the reset button's a... |
f4b61d316c3114f0a5e9818e0d6c5612451203866e8939d81405b7588337fd9c | TypeScript | 877 | 21 | import { getLocalVue } from "@tests/vitest/helpers";
import { mount } from "@vue/test-utils";
import { describe, expect, it } from "vitest";
import FormRepeat from "./FormRepeat.vue";
const localVue = getLocalVue();
describe("FormRepeat", () => {
it("titles repeat blocks from 1", () => {
const wrapper = ... |
439b42dc06303500ade87e7a7a0402f701a9444fe2677ce94162333921ec6c22 | TypeScript | 880 | 30 | import { getLocalVue } from "@tests/vitest/helpers";
import { mount } from "@vue/test-utils";
import { describe, expect, it } from "vitest";
import { nextTick } from "vue";
import DelayedInput from "./DelayedInput.vue";
const localVue = getLocalVue();
function mountDelayedInput(props = {}) {
return mount(Delayed... |
ab9a5cf96b4d41de251a7c7059fb543fce12d25d20c76bdd466367cff58024d8 | TypeScript | 881 | 27 | import type { Ref } from "vue";
import { useUserLocalStorage } from "@/composables/userLocalStorage";
/**
* Shared state for upload panel advanced mode.
* All components calling this composable will share the same reactive reference.
*/
let sharedAdvancedMode: Ref<boolean> | null = null;
/**
* Composable for man... |
fd6c254d9007e33d0a7a1d995bab329766613584b9c7f4ae79cd80d69edd0069 | TypeScript | 881 | 32 | export interface Option {
name: string;
value: string;
leaf?: boolean;
fullPath?: string;
disabled?: boolean;
options: Array<Option>;
}
export type Value = string[] | string | null;
/**
* Returns an array of values from nested drill down options provided
* @param headOptions Array of options... |
ea9dfcedae9391473702e4ba292f204309d5c53d1d71c365cac4811753ce1c99 | TypeScript | 888 | 30 | import { redirectLoggedIn } from "@/router/guards";
import Login from "@/entry/analysis/modules/Login.vue";
import Register from "@/entry/analysis/modules/Register.vue";
import ResetPassword from "@/entry/analysis/modules/ResetPassword.vue";
/**
* Entry routes for logging in and registering.
*
* These use a `befor... |
b63aa3fbdf9756480f74308a956671a1980b7ecb831b1d77c6f6d5a198dfa7f7 | TypeScript | 892 | 24 | import { getLocalVue } from "@tests/vitest/helpers";
import { shallowMount } from "@vue/test-utils";
import { describe, expect, it } from "vitest";
import { STANDARD_FILE_SOURCE_TEMPLATE } from "./test_fixtures";
import TemplateSummaryPopover from "./TemplateSummaryPopover.vue";
import GPopover from "@/components/Bas... |
fbf2c5b99c55ced2ea3ec8b57f78257e3e182fb5e3e14aee457981c6a873ac17 | TypeScript | 895 | 25 | import type { ComputedRef, InjectionKey } from "vue";
import type { ComponentSize } from "./componentVariants";
/** One entry of GCheckboxGroup's `options` prop. */
export interface CheckboxGroupOption<T = unknown> {
/** Label shown next to the checkbox */
text: string;
/** Value added to the group's v-mo... |
8cc481bbe35a4399ebff236b7633b9ce006c99a87fc3f1dfa075c44232ba2297 | TypeScript | 896 | 22 | import { describe, expect, it } from "vitest";
import { HttpResponse, useServerMock } from "@/api/client/__mocks__";
import { submitCILogon } from "./ExternalIDHelper";
const { server, http } = useServerMock();
describe("submitCILogon", () => {
it("sends the post-login destination", async () => {
let ne... |
be49c1d23341eb0a91d6dcfab770bfc66b9406760c24891f0968c56d37f272fc | TypeScript | 896 | 28 | import useSWR from "swr";
import { Organization } from "@/api/schemas";
import { fetcher } from "@/api/swr";
/**
* The organization's name for breadcrumbs. While it is fetched, falls back to
* the name the navigation cached, but only when that cache is for this same
* organization, then to the bare id.
*/
export ... |
9a0c0c2f7dfc0e22cec7d3ffb17c4d47f3766170ca743923a46209729119b879 | TypeScript | 900 | 32 | import { Toast } from "@/composables/toast";
export function browserSupportsPushNotifications() {
return "Notification" in window;
}
export function handlePermission(permission: string) {
if (permission === "granted") {
new Notification("Notifications enabled", {
icon: "static/favicon.ico"... |
a286352c1a12adbea4e4c0e1c1f6e0c574851e19c836f574e746258a2dff6f84 | TypeScript | 902 | 23 | import { readFileSync, readdirSync } from "node:fs";
import path from "node:path";
import { describe, it, expect } from "vitest";
const SRC = path.resolve(__dirname, "../../src");
function sourceFiles(dir: string): string[] {
return readdirSync(dir, { withFileTypes: true }).flatMap((entry) => {
const full... |
0c9618631c789212071422a62c990b1f2124a77f56ee199f61496774588fc9c9 | TypeScript | 904 | 32 | import { createTestingPinia } from "@pinia/testing";
import { vi } from "vitest";
// IMPORTANT: This import MUST come after the mock calls above for proper module hoisting
import { getSelectableObjectStores } from "@/api/objectStores";
vi.mock("@/api/objectStores");
const OBJECT_STORES = [
{
id: "object_... |
d45443f896cedf0aca864db971b5d04786134a18239f3aab4055ce367ad8ee6e | TypeScript | 914 | 38 | /**
* Simple error handling utilities for Galaxy Client API
*/
/**
* Convert various error formats to a readable string message
*/
export function errorMessageAsString(error: any): string {
if (typeof error === "string") {
return error;
}
if (error instanceof Error) {
return error.mess... |
862b6b6f88396e0e8a6d5b418083a4492244e18d81aa00b3c3e3474932285dad | TypeScript | 917 | 27 | import { errorMessageAsString } from "@/utils/simple-error";
export interface SettleFailure<T> {
item: T;
error: string;
}
/** Awaits `operation` on each item in order, continuing past failures; returns the failures. */
export async function settleEach<T>(
items: readonly T[],
operation: (item: T) => ... |
e05d3571fbafdc1a8d647bcadafada3dcb38bf9b2b5996e5a26cdee2e1c40cb8 | TypeScript | 919 | 17 | /** Row caps and query thresholds shared by the palette providers, so sections of a kind size alike */
export const PALETTE_LIMITS = {
/** Rows of any result section: scoped, root, category, recent, bookmarked and action argument rows */
section: 8,
/** Own, cached rows in a root answer */
rootOwn: 5,
... |
68aacf077dbdb1218f40bee2484079e5bac02d1e12eb1c2dc7eb3c0021a14e3d | TypeScript | 921 | 23 | /**
* FileBrowser — reusable remote file source browser components.
*
* Primary entry points:
* - `RemoteFileBrowserModal` — GModal-backed dialog for selecting remote files/directories
* - `RemoteFileBrowserContent` — standalone inline browser (no modal wrapper)
* - `useRemoteFileBrowser` — headless composabl... |
e9d27ac2cec637327c7edec628e1893d68a745f97f5e0c47fd13e82ffa9a447a | TypeScript | 923 | 31 | import { schemaToInterface } from "schema-to-ts";
import { parse } from "yaml";
import { GalaxyApi } from "@/api";
async function fetchRuntimeSchema(toolSource: any) {
const { data, error } = await GalaxyApi().POST("/api/unprivileged_tools/runtime_model", {
body: {
active: true,
hi... |
2b75db98f498f36a1442ea5c64a31400458f822b1972d0e996d4e793d9ff9dfd | TypeScript | 926 | 24 | import { type Ref, ref } from "vue";
import type { DatatypesMapperModel } from "@/components/Datatypes/model";
import { useDatatypesMapperStore } from "@/stores/datatypesMapperStore";
export function useDatatypesMapper() {
const datatypesMapperLoading = ref(true);
const datatypesMapper: Ref<DatatypesMapperMod... |
1cd43bc61d38975aee3b8fcfc48bcb20d16c0ffe066d3f3159d97e2874d9a518 | TypeScript | 927 | 31 | import { defineStore } from "pinia";
import { getDatatypesMapper } from "@/components/Datatypes";
import type { DatatypesMapperModel } from "@/components/Datatypes/model";
import { rethrowSimple } from "@/utils/simple-error";
interface State {
datatypesMapper: DatatypesMapperModel | null;
loading: boolean;
}
... |
2989d48a4e6108f5d3029109c7dffd0910d2a39ff35e9511c26abfa8607d1bbb | TypeScript | 929 | 26 | import { useRoute, useRouter } from "vue-router";
import { useChatStore } from "@/stores/chatStore";
/** Shared behavior for the various "New Chat" buttons. */
export function useStartNewChat() {
const route = useRoute();
const router = useRouter();
const chatStore = useChatStore();
/** @param center... |
d34d0bae7c37ca77face8e2ca8316c3f671e291aace864a248d2cb9deca3ebc2 | TypeScript | 931 | 24 | import { nth } from "@tests/vitest/helpers";
import { mount } from "@vue/test-utils";
import { describe, expect, it } from "vitest";
import FormColumnDefinition from "./FormColumnDefinition.vue";
describe("FormColumnDefinition", () => {
it("marks the column optional when the checkbox is checked", async () => {
... |
602105f1e3f7d80c21887ec3d8465cc38bf3f6afaa28a1a4ab7c40a6e5525a17 | TypeScript | 936 | 30 | import flushPromises from "flush-promises";
import { afterEach, expect, it, vi } from "vitest";
import { ref } from "vue";
import { useToolTrainingMaterial } from "./toolTrainingMaterial";
vi.mock("./config", () => ({
useConfig: () => ({
config: ref({
tool_training_recommendations: true,
... |
2494469b8ed1cf8f76a18197d12c6d306bb3708b114f1c90d95197ed5209b2c2 | TypeScript | 942 | 37 | export interface TerminalToOutputTerminals {
[index: string]: OutputTerminal[];
}
export interface InvalidConnections {
[index: ConnectionId]: string | undefined;
}
export interface State {
connections: Connection[];
invalidConnections: InvalidConnections;
inputTerminalToOutputTerminals: TerminalT... |
ee0fd02c5afd25afde6c612bee3fc82e0c5c25660f1c3b9884864ac4dfaa9e5e | TypeScript | 942 | 28 | import { readFileSync } from "node:fs";
import path from "node:path";
import { describe, it, expect } from "vitest";
function readEnv(file: string): Record<string, string> {
const text = readFileSync(path.resolve(__dirname, "../..", file), "utf8");
return Object.fromEntries(
text
.split("\n... |
abbf7cfd69d1acbc0334a4c01decf76a132eced1d7f3215c619726ac98f924e4 | TypeScript | 944 | 36 | import { vi } from "vitest";
import { ref } from "vue";
const isConfigLoadedRef = ref(true);
// Default mock config values
const defaultConfig = {
allow_local_account_creation: true,
enable_oidc: false,
mailing_join_addr: "",
prefer_custos_login: false,
registration_warning_message: "",
server... |
d2b3bb413fb4bd29f43d7131d8ccda1123e39f4d11f4141aa1cc07cf27a1d1ea | TypeScript | 947 | 29 | import { computed, type Ref, toRef } from "vue";
import { useHistoryStore } from "@/stores/historyStore";
interface Props {
historyId: string;
}
export function useHistoryBreadCrumbsToForProps<T extends Props>(props: T, historyAction: string) {
const historyId = toRef(() => props.historyId);
return useHi... |
ff04d6c210bc068efb1cfe41fd2f08d814d8d8a34e28754975ec159be3f28f57 | TypeScript | 948 | 29 | import { defineConfig, devices } from "@playwright/test";
const PORT = 4173;
export default defineConfig({
testDir: "./e2e",
fullyParallel: true,
forbidOnly: !!process.env.CI,
retries: process.env.CI ? 2 : 0,
reporter: process.env.CI ? "github" : "list",
use: {
baseURL: `http://localho... |
7aa4b1bb0fb37b445a1b713bb21c5312c9c5600630d2ed8244dc79ca53505618 | TypeScript | 950 | 33 | /**
* composed array of all Event Targets between the original and current target
*
* @param e Event to return partial composed path of
*/
export function composedPartialPath(e: Event): EventTarget[] {
const current = e.currentTarget;
const composed = e.composedPath();
const currentIndex = composed.fin... |
415688d2bef84b3e6f2e6adc5372756a8d309d9ef7d68339b516f9206d545447 | TypeScript | 956 | 31 | import axios from "axios";
import { getAppRoot } from "@/onload";
import { rethrowSimple } from "@/utils/simple-error";
import type { TemplateEntry } from "./types";
export interface VisualizationType {
description: string;
html: string;
logo?: string;
name: string;
}
export async function getVisual... |
f6d41cef691bb945c204f66f9781ced7bcb6d13c885c52223722ce02fc2b575d | TypeScript | 957 | 31 | import type { Ref } from "vue";
export type SelectValue = Record<string, unknown> | string | number | null;
export interface SelectOption {
label: string;
value: SelectValue;
}
export interface UseSelectManyOptions {
optionsArray: Ref<SelectOption[]>;
filter: Ref<string | RegExp>;
selected: Ref<S... |
b02386e7953676f41f85cf6c257d6ef21e54441849af9015539e6d06d6040d15 | TypeScript | 960 | 23 | import { getLocalVue } from "@tests/vitest/helpers";
import { mount } from "@vue/test-utils";
import { describe, expect, it, vi } from "vitest";
import { sanitizeHtml } from "@/directives/sanitizeHtml";
import GTip from "./GTip.vue";
describe("GTip", () => {
it("renders the tip markdown through v-sanitize-html w... |
c675700c734861f2027771b335fbb4eb2d0979d650fa0bd321df2aeb8d07aba5 | TypeScript | 965 | 26 | import type { RouteLocationNormalized, RouteLocationRaw } from "vue-router";
export interface ZipImportCounts {
workflowFileCount: number;
regularFileCount: number;
}
/** Where the wizard sends the user once the import has started. */
export function zipImportResultsLocation(counts: ZipImportCounts): RouteLoc... |
b14caed4136e5fe3a7e37f867a39d715323386831dff073b97b8c4721bc8e3f7 | TypeScript | 969 | 27 | import { describe, expect, it } from "vitest";
import { useServerMock } from "@/api/client/__mocks__";
import { getDatatypesMapper } from "./index";
import { typesAndMappingResponse } from "./test_fixtures";
const { server, http } = useServerMock();
server.use(
http.get("/api/datatypes/types_and_mapping", ({ re... |
1da3f9afd7faca6d03ca09ba6b3ac881299a127f9e8cf3619775711bba132008 | TypeScript | 971 | 30 | import { mount } from "@vue/test-utils";
import flushPromises from "flush-promises";
import { expect, it, vi } from "vitest";
import { defineComponent } from "vue";
import { useDataLoading } from "./util";
const { errorToast } = vi.hoisted(() => ({ errorToast: vi.fn() }));
vi.mock("@/composables/toast", () => ({
... |
57036534175d9ec92286d34d150503b06fdd69739370dfcb5460170d64658751 | TypeScript | 985 | 30 | /**
* Polls an async function until a condition is met or timeout is reached.
* Returns the final result that satisfied the condition.
*
* @param fn - Async function to call on each poll iteration.
* @param condition - Predicate that determines when polling should stop.
* @param interval - Milliseconds between po... |
d5f109792af14462dec298558dcc723ac217780344ba09c6268f5bc52f0bc28f | TypeScript | 989 | 26 | import { type MaybeRefOrGetter, toValue } from "@vueuse/core";
import { computed, ref } from "vue";
import { buildSearchIndex, type FilterField, rankSearchIndex } from "@/composables/filter/filterFunction";
/**
* Search state for a select with `internal-search` disabled: wire `onSearchChange` to its
* `search-chang... |
131338d992a244eeeb4ef07bee5459ea04131d0d4a3505a032cf481203d5290d | TypeScript | 993 | 36 | import type { HistorySummary, RegisteredUser } from "@/api";
export function getFakeRegisteredUser(data: Partial<RegisteredUser> = {}): RegisteredUser {
return {
id: "fake_user_id",
email: "fake_user_email",
isAnonymous: false,
username: "fake_username",
total_disk_usage: 0,... |
34c4939b0f89fc8d7f02168f73dda02901e5e53dda00d2a3a4b595695c874397 | TypeScript | 995 | 37 | import type { components } from "@/api/schema";
import { bytesToString } from "@/utils/utils";
type CleanableItemsSummaryResponse = components["schemas"]["CleanableItemsSummary"];
/**
* Contains summary information about how much storage space can be recovered by removing
* a collection of items from it.
*/
export... |
4444f04587baa2dacea800eb1246a1ef6d7063e99575837af4b7f50bdcb8f632 | TypeScript | 997 | 26 | import { getLocalVue } from "@tests/vitest/helpers";
import { mount } from "@vue/test-utils";
import { describe, expect, it, vi } from "vitest";
import { sanitizeHtml } from "@/directives/sanitizeHtml";
import TourStep from "./TourStep.vue";
describe("TourStep", () => {
it("renders the title and content through ... |
3ea3e6a827bc7ba98174eb4aef7098227d068bf167b22dfd9f192a1452123f91 | TypeScript | 998 | 32 | import { type components, GalaxyApi } from "@/api";
import { rethrowSimple } from "@/utils/simple-error";
export type TourDetails = components["schemas"]["TourDetails"];
export type TourSummary = components["schemas"]["Tour"];
export type TourRequirements = components["schemas"]["TourDetails"]["requirements"];
export ... |
bb1220934a8766c61d15cdedff4f7ad4e18ae015ff23a7357ec063fb8feb0ef2 | TypeScript | 1,006 | 28 | import { GalaxyApi, type ObjectExportTaskResponse } from "@/api";
import { ExportRecordModel } from "@/components/Common/models/exportRecordModel";
import { rethrowSimple } from "@/utils/simple-error";
import type { components } from "./schema";
export type WriteStoreToPayload = components["schemas"]["WriteStoreToPay... |
9a42ffaa66cdc351d9e4572a376c43c8d61d4f08d6b5a86121e9ac83e7078810 | TypeScript | 1,009 | 34 | import { unref } from "vue";
import { useUid } from "./utils/uid";
/**
* Allows for keying objects by their internal ids.
* Returns a function which takes an object and returns a string uid.
* Passing the same object to this function twice, will return the same id.
*
* Passing the same object to a function creat... |
d314fd5cfc91108b58caa7bdbcebaf44a531890cb8d1c10d56ab80e7a1e1d9ed | TypeScript | 1,011 | 24 | type JsonObject = Record<string, unknown>;
const INSTANCE_VALUE_KEYS = new Set(["const", "default", "enum", "examples"]);
export const TOOL_SOURCE_SCHEMA_URI = "https://schema.galaxyproject.org/customTool.json";
/** Preserve Markdown formatting in descriptions consumed by Monaco's YAML language service. */
export fun... |
14f86b887547c502b95f76a725405abfc66765dbd263104db39de5c161230347 | TypeScript | 1,014 | 23 | import { computed, type Ref } from "vue";
import type { FileSourceTemplateSummary, UserFileSourceModel } from "@/api/fileSources";
import { useFileSourceInstancesStore } from "@/stores/fileSourceInstancesStore";
import { useFileSourceTemplatesStore } from "@/stores/fileSourceTemplatesStore";
export function useInstan... |
04b330382da65bb069d87a91cf18d8a82976bd5a5d3be8de4c18e80cffe21b10 | TypeScript | 1,016 | 30 | import type { Store } from "pinia";
const referenceCountByStore = new WeakMap<Store, number>();
/**
* Reference counts a store, and provides a function to safely dispose it after a timeout.
* @param store store to reference count and dispose
* @param timeout how long to wait before reference counting and attemptin... |
b302a83e325bb5d75748b06006c6c2a7572e816eaeb6711d73d3a076a009913e | TypeScript | 1,017 | 31 | import { computed } from "vue";
import { RouterLink } from "vue-router";
export interface ClickableProps {
to?: string;
href?: string;
disabled?: boolean;
}
/**
* Returns the correct type of clickable root element based on a component's props.
*
* A disabled component always renders as a plain `button`... |
d8549bacd81355a827b887a758f5478b2af790cbae9f1184f39da862bf76fa9a | TypeScript | 1,017 | 25 | import { getLocalVue } from "@tests/vitest/helpers";
import { mount } from "@vue/test-utils";
import { describe, expect, it, vi } from "vitest";
import type { JobExportHistoryArchiveModel } from "@/api/histories.export";
import { copy } from "@/utils/clipboard";
import ExportLink from "./ExportLink.vue";
vi.mock("@/... |
8c720e2655c916564f2a1e8c76b9040d446ba7d7f82f5406ee61bebe38545024 | TypeScript | 1,023 | 29 | import { getLocalVue } from "@tests/vitest/helpers";
import { mount } from "@vue/test-utils";
import flushPromises from "flush-promises";
import { afterEach, describe, expect, it, vi } from "vitest";
import GModal from "./GModal.vue";
const localVue = getLocalVue();
describe("GModal", () => {
afterEach(() => {
... |
40cd9672e649f962d8b191b094b87ebf2ba738bec8f0c763913dbe17225c4a56 | TypeScript | 1,028 | 21 | import type { InvocationExportPlugin } from "@/components/Workflow/Invocation/Export/Plugins";
export const BIO_COMPUTE_OBJ_EXPORT_PLUGIN: InvocationExportPlugin = {
id: "bco",
title: "BioCompute Object",
img: "https://www.biocomputeobject.org/static/media/logo.c8a91f1656efbad5d745.png",
url: "https://... |
49e747b9b60069c062b182171f586654eeea9fbd556801c77d0acd043904114a | TypeScript | 1,031 | 40 | import { fetchApi, fetchApiVoid } from "./client";
import { IProjectToken, ProjectTokenSchema } from "./schemas";
export async function getProjectTokens(
projectId: string,
): Promise<IProjectToken[]> {
try {
return await fetchApi(
`/projects/${projectId}/api-tokens`,
ProjectTok... |
7e15c8a516cc6c68bab5599c82d2ef58f5c0c09aa83d1aa071a19d1c47ae3886 | TypeScript | 1,031 | 29 | import { getLocalVue } from "@tests/vitest/helpers";
import { mount } from "@vue/test-utils";
import { describe, expect, it } from "vitest";
import type { JobBaseModel } from "@/api/jobs";
import JobDetails from "./JobDetails.vue";
const localVue = getLocalVue();
const JobInformationStub = {
name: "JobInformati... |
2100f827a8626205e3f40b50562e51964e77b25bea881f4c54d6fdce1accd964 | TypeScript | 1,048 | 28 | import { getLocalVue } from "@tests/vitest/helpers";
import { mount } from "@vue/test-utils";
import { describe, expect, it } from "vitest";
import SlugInput from "./SlugInput.vue";
function mountSlugInput() {
return mount(SlugInput, { props: { slug: "my-page" }, global: getLocalVue() });
}
describe("SlugInput",... |
a83c0ed309a1b9fd92a6835ec35d098e03dc8bc2babb5186715ca652ff8df2dd | TypeScript | 1,051 | 30 | import axios from "axios";
import { afterEach, beforeEach, describe, expect, it, vi } from "vitest";
vi.mock("axios");
vi.mock("@/onload/loadConfig", () => ({ getAppRoot: () => "/" }));
const onloadWebhook = { id: "onload_hook", type: ["onload"], activate: true };
describe("loadWebhooks", () => {
beforeEach(() =... |
da2a8e3765bc0c64282e1152c9d2391a6d6a71ff6a3c0d893009a8bc21fd433e | TypeScript | 1,053 | 30 | import { describe, expect, it } from "vitest";
import { makeLocalFileItem, makeRemoteFilesItem, makeUrlItem } from "@/composables/upload/testHelpers/uploadFixtures";
import type { NewUploadItem } from "@/composables/upload/uploadItemTypes";
import { getUploadItemDisplayInfo } from "./uploadProgressUi";
function with... |
a2da4a043145c851c18c864ae5239d84f9d90ec189daca83b3b413eb038a3a37 | TypeScript | 1,055 | 24 | import { getLocalVue } from "@tests/vitest/helpers";
import { mount } from "@vue/test-utils";
import { describe, expect, it } from "vitest";
import GHeading from "../Common/Heading.vue";
describe("collapsible headings", () => {
it.each([false, true])("names the toggle and keeps its state in sync (separator=%s)", ... |
c53080b96aea769313ad61cdb28a211a5309eda53e06ef3cbdb5360e17bda902 | TypeScript | 1,057 | 18 | import type { InvocationExportPlugin } from "@/components/Workflow/Invocation/Export/Plugins";
export const RO_CRATE_EXPORT_PLUGIN: InvocationExportPlugin = {
id: "ro-crate",
title: "Research Object Crate",
img: "https://www.researchobject.org/workflow-run-crate/img/ro-crate-workflow-run.svg",
url: "ht... |
e7283a3ae78b48220217337987be651d000d5259ee35e6c8609d9ccd7b5097dc | TypeScript | 1,062 | 27 | import { defineStore } from "pinia";
import { type DatasetCollectionAttributes, GalaxyApi } from "@/api";
import { type FetchParams, useKeyedCache } from "@/composables/keyedCache";
import { rethrowSimpleWithStatus } from "@/utils/simple-error";
export const useCollectionAttributesStore = defineStore("collectionAttri... |
eac8ac796e0178fb3edfeedd248408afebb5fb8dc1071025c096beddf3da93ab | TypeScript | 1,063 | 30 | import { beforeEach, describe, expect, it, vi } from "vitest";
import { HttpResponse, useServerMock } from "@/api/client/__mocks__";
const { server, http } = useServerMock();
// Upload utils cache datatypes at module scope, so reload all modules for each test.
async function setup() {
const { createPinia, setAct... |
8f41b8c23f906910000f629ea24894750fae61852ea89163fae8ff4e75484206 | TypeScript | 1,075 | 31 | import axios from "axios";
import { getAppRoot } from "@/onload/loadConfig";
import { rethrowSimple } from "@/utils/simple-error";
import type { CitationsResult } from ".";
export async function getCitations(source: string, id: string): Promise<CitationsResult> {
try {
const request = await axios.get(`${... |
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