sha256 stringlengths 64 64 | language stringclasses 28
values | size int32 1 491k | lines int32 1 23.2k | content stringlengths 1 200k |
|---|---|---|---|---|
49fd8045da619cc4c754d5fb4c9f2f095430980913a896597526ba860a0bbf53 | TypeScript | 1,082 | 28 | import { defineStore } from "pinia";
import { GalaxyApi } from "@/api";
import type { JobDestinationParams } from "@/api/jobs";
import { type FetchParams, useKeyedCache } from "@/composables/keyedCache";
import { rethrowSimpleWithStatus } from "@/utils/simple-error";
export const useJobDestinationParametersStore = de... |
419e91048f27f7b56dd5c8ebf65ee53e7bc4cc3f0485eff6fd25aa84327c1765 | TypeScript | 1,086 | 31 | import { computed, ref } from "vue";
import { useUserStore } from "@/stores/userStore";
import { useWorkflowStore } from "@/stores/workflowStore";
import { errorMessageAsString } from "@/utils/simple-error";
export function useWorkflowInstance(workflowId: string) {
const workflowStore = useWorkflowStore();
co... |
fc0c715f7ff3cd7e7b01edac94283fa3d34200db2c894a0c73c99bda402113e4 | TypeScript | 1,087 | 29 | import type { ComputedRef, InjectionKey } from "vue";
import type { ComponentColor, ComponentSize } from "../componentVariants";
/** One entry of GRadioGroup's `options` prop. */
export interface RadioGroupOption<T = unknown> {
/** Label shown next to the radio */
text: string;
/** Value the group's v-mod... |
1967235f2887ed1a3a93eff1378c87d098942424c08d8306653064a50747dd84 | TypeScript | 1,088 | 29 | import { createTestingPinia } from "@pinia/testing";
import { mount } from "@vue/test-utils";
import { describe, expect, it, vi } from "vitest";
import { useWorkflowNodeInspectorStore } from "@/stores/workflowNodeInspectorStore";
import type { Step } from "@/stores/workflowStepStore";
import { simpleSteps } from "./t... |
8e77344f5f23de7f3f0b3ff03a868b198dda598b5c16942a7476e3f79b5e3fe7 | TypeScript | 1,091 | 25 | import { computed, type Ref } from "vue";
import type { ObjectStoreTemplateSummary } from "@/components/ObjectStore/Templates/types";
import { useObjectStoreInstancesStore } from "@/stores/objectStoreInstancesStore";
import { useObjectStoreTemplatesStore } from "@/stores/objectStoreTemplatesStore";
import type { User... |
7d423f2ff7e684218809c8131aad6b5a2d219b036bd221c3f355ae614a5ee16b | TypeScript | 1,092 | 45 | import {
faArrowRightFromBracket,
faArrowRightToBracket,
faCodeBranch,
faComment,
faFile,
faFolderOpen,
faMessage,
faObjectGroup,
faPause,
faPen,
faSitemap,
faWrench,
} from "font-awesome-6";
import type { SearchData } from "@/stores/workflowSearchStore";
export const i... |
78b8bc0f84e70ac05d206a96508b692c612193283131e824c08811f18d30246e | TypeScript | 1,094 | 29 | import { defineStore } from "pinia";
import { ref } from "vue";
import { type BrowsableFilesSourcePlugin, fetchFileSources, type FilterFileSourcesOptions } from "@/api/remoteFiles";
export const useFileSourcesStore = defineStore("fileSourcesStore", () => {
const cachedFileSources = ref<{
[key: string]: Br... |
e5676455e756f347e26e201667859a05aacad58849e667a2c2415f6c3920ee22 | TypeScript | 1,099 | 28 | import { defineStore } from "pinia";
import { GalaxyApi } from "@/api";
import type { DatasetExtraFiles } from "@/api/datasets";
import { type FetchParams, useKeyedCache } from "@/composables/keyedCache";
import { rethrowSimpleWithStatus } from "@/utils/simple-error";
export const useDatasetExtraFilesStore = defineSt... |
be0b90488a5475fe441405eccb8721bcdf196922f5b974cc61c4f65f97b40e66 | TypeScript | 1,104 | 32 | import { computed } from "vue";
import { isDetailedCollection } from "@/api";
import { useDatasetCollectionStore } from "@/stores/datasetCollectionStore";
import { errorMessageAsString } from "@/utils/simple-error";
interface Props {
collectionId: string;
}
export function useDetailedCollection<T extends Props>(... |
47141cb38ed2a60ad2eb02cabdd31d9cfb4d47b1776673b7a7f668136225d4a8 | TypeScript | 1,107 | 42 | import { type MaybeRefOrGetter, resolveUnref } from "@vueuse/core";
import { reactive, ref } from "vue";
import { useAnimationFrame } from "./animationFrame";
export function useAnimationFrameScroll(element: MaybeRefOrGetter<HTMLElement | null>) {
const scrollLeft = ref(0);
const scrollTop = ref(0);
cons... |
97fe7f621539e4db6152690ff522beaeffb1e40bda2ca3e8603d4e90e1ea4163 | TypeScript | 1,111 | 37 | import { getLocalVue } from "@tests/vitest/helpers";
import { mount } from "@vue/test-utils";
import flushPromises from "flush-promises";
import { describe, expect, it, vi } from "vitest";
import svc from "./model/service";
import APIKey from "./APIKey.vue";
vi.mock("@/app", () => ({
getGalaxyInstance: () => ({ ... |
dd3c740f58be0cfea7e70715f8002351dd7e3187fcbbd519610b16a1669698ce | TypeScript | 1,111 | 31 | import { storeToRefs } from "pinia";
import type { CollectionElementIdentifiers, CreateNewCollectionPayload } from "@/api";
import { createCollectionPayload } from "@/api/datasetCollections";
import { useHistoryStore } from "@/stores/historyStore";
/** `historyId` is the history to create collections in; the current ... |
0c47c4ca6939634f3cf8f38ed3dafbba6399a2a1e90f9063d36816ea5b786290 | TypeScript | 1,113 | 25 | import { getLocalVue } from "@tests/vitest/helpers";
import { shallowMount } from "@vue/test-utils";
import { describe, expect, it, vi } from "vitest";
import { sanitizeHtml } from "@/directives/sanitizeHtml";
import FormElementHelpMarkdown from "./FormElementHelpMarkdown.vue";
vi.mock("@/onload/loadConfig", () => (... |
77b2a1c27982c496e541916a31792d2aff8313ed54a0464c9ebce4486b5ce202 | TypeScript | 1,115 | 27 | import { mount } from "@vue/test-utils";
import { describe, expect, it } from "vitest";
import type { RowOptionDescriptor } from "@/composables/upload/uploadOptionBindings";
import UploadTableOptionsCell from "./UploadTableOptionsCell.vue";
const options: RowOptionDescriptor[] = [
{ key: "spaceToTab", label: "Sp... |
7da1d28b0e188187965b6974058caa1f118cff07c25d3865e83def8c56bcdab0 | TypeScript | 1,117 | 32 | /** Parse a TRS version name like "v1.2.3" into numeric parts, or null if it holds no version number. */
function parseTrsVersion(name: string): number[] | null {
const match = name.match(/(\d+)(?:\.(\d+))?(?:\.(\d+))?/);
if (!match) {
return null;
}
return [
parseInt(match[1] as string,... |
9271c1ca8edd11301b83b88288e9012eb1097b360b54162f53d3982d014a407c | TypeScript | 1,119 | 27 | import { getLocalVue } from "@tests/vitest/helpers";
import { mount } from "@vue/test-utils";
import { describe, expect, it } from "vitest";
import CardDownloadWorkbook from "./CardDownloadWorkbook.vue";
const DOWNLOAD_LINK = '[data-description="workbook download link"]';
describe("CardDownloadWorkbook", () => {
... |
b5adff2583e1f25671c4467736402412163ce7c2a33037acd7b736f7441316a4 | TypeScript | 1,119 | 37 | import { getLocalVue } from "@tests/vitest/helpers";
import { shallowMount } from "@vue/test-utils";
import { describe, expect, it } from "vitest";
import FormSection from "./FormSection.vue";
import FormElement from "@/components/Form/FormElement.vue";
const localVue = getLocalVue();
function mountFormSection(suppo... |
379ff20c60b31b8c3c8eae87bbee3080b760b72e2e719987c62614f20f368490 | TypeScript | 1,126 | 33 | import { defineStore } from "pinia";
import { useUserLocalStorage } from "@/composables/userLocalStorage";
export type PreferredFormSelect = "none" | "multi" | "many";
export const useUserFlagsStore = defineStore("userFlagsStore", () => {
const showSelectionQueryBreakWarning = useUserLocalStorage("user-flags-sto... |
95f43c145ac5ea2b1182c90a8051ac71cc7615a82511c9d4f39869fba9e8bd8a | TypeScript | 1,128 | 31 | import { describe, expect, it } from "vitest";
import { isValidUrl } from "./zipExplorer";
describe("useZipExplorer", () => {
describe("isValidUrl", () => {
it("should return true for valid URLs", () => {
expect(isValidUrl("http://example.com")).toBe(true);
expect(isValidUrl("https... |
238c364f57c9dd1cc0b768f8de5d52d70c87900d688f912fd8832a9869acba52 | TypeScript | 1,137 | 31 | import { http as mswHttp } from "msw";
import { createPinia, setActivePinia } from "pinia";
import { beforeEach, expect, it, vi } from "vitest";
import { HttpResponse, useServerMock } from "@/api/client/__mocks__";
import { useConfigStore } from "@/stores/configurationStore";
const { server, http } = useServerMock();... |
cb8000eeff362d7d3eb3e0ab2a3ab9f1c3b5abc89dfc60ddaa7a36c2e3f02e1d | TypeScript | 1,139 | 33 | import { getLocalVue } from "@tests/vitest/helpers";
import { mount } from "@vue/test-utils";
import { describe, expect, it } from "vitest";
import CodeRow from "./CodeRow.vue";
const localVue = getLocalVue();
function mountCodeRow(codeItem: string) {
return mount(CodeRow as object, {
props: { codeLabel:... |
0d0d002585f5e2e3cb80ffa40bda99a7c411ca211e48daec933e31792bd06f39 | TypeScript | 1,147 | 33 | import { getLocalVue } from "@tests/vitest/helpers";
import { shallowMount } from "@vue/test-utils";
import { describe, expect, it } from "vitest";
import CreateInstance from "./CreateInstance.vue";
const localVue = getLocalVue(true);
describe("CreateInstance", () => {
it("should render a loading message during ... |
bc82735151068ddf411d06e2b4bd1f5dd710fc35dd02afeb1b7dca201e758aba | TypeScript | 1,148 | 29 | import "highlight.js/styles/github.css";
import hljs from "highlight.js/lib/core";
import bash from "highlight.js/lib/languages/bash";
import json from "highlight.js/lib/languages/json";
import yaml from "highlight.js/lib/languages/yaml";
hljs.registerLanguage("bash", bash);
hljs.registerLanguage("console", bash);
hl... |
969544d02335b986af4f53fe9acd0721441ef7d3cc072e3c085757083d82c37b | TypeScript | 1,151 | 33 | /**
* Asserts that a value is not undefined or null
* @param value value to test
* @param error optional error message, or Error object
*/
export function assertDefined<T>(value: T, error?: string | Error): asserts value is NonNullable<T> {
if (value === undefined || value === null) {
const message = er... |
351fb7c5a09574222d1b4931c0ce1a162cf0e198fad998e3a2e69212421ebd0c | TypeScript | 1,152 | 24 | import "vitest";
// Custom matchers from tests/vitest/helpers.js
interface CustomMatchers<R = unknown> {
toBeLocalized(): R;
toBeLocalizationOf(str: string): R;
}
declare module "vitest" {
// Export vitest functions for explicit imports (non-globals mode)
export const describe: (typeof import("vitest/... |
45fa908f5add8b2a21b3b4a7caaf85a0da9949ddf8b17a0ce1f71388a826262c | TypeScript | 1,152 | 32 | import { getLocalVue } from "@tests/vitest/helpers";
import { mount } from "@vue/test-utils";
import flushPromises from "flush-promises";
import { describe, expect, it, vi } from "vitest";
import { deletedUnusedPaths, getDependencyUnusedPaths } from "../AdminServices";
import UnusedIndex from "./UnusedIndex.vue";
vi... |
77cafc9e777164949ededdf43bf98c5ce950ab3874535b3e617182628385760f | TypeScript | 1,152 | 35 | import { computed, type ComputedRef } from "vue";
import type { AnyHistory } from "@/api";
import { useHistoryStore } from "@/stores/historyStore";
import {
getHistoryUploadBlockReason,
getHistoryUploadWarningMessage,
type HistoryUploadBlockReason,
} from "@/utils/historyUpload";
interface TargetHistoryUp... |
c77e1c0f95e16cbd5ab209656a5343f7947d6f01b91fc67089f584d7031ca254 | TypeScript | 1,173 | 37 | import type { Step, WorkflowStepStore } from "@/stores/workflowStepStore";
import { cloneRaw } from "@/utils/toRawDeep";
/**
* Copies a step and increments a trailing number in it's label,
* or adds said trailing number
*
* @param step step to clone
* @param labelSet set containing all labels. Will me mutated to ... |
74bb2333cea98e4788fded9e6b9183f61de328395eda2b4a45d36c7a63471974 | TypeScript | 1,174 | 31 | import { describe, expect, it } from "vitest";
import { ref } from "vue";
import { useRankedSearch } from "./useRankedSearch";
function toItems(ids: string[]) {
return ids.map((id) => ({ id, text: id }));
}
describe("useRankedSearch", () => {
it("returns the items unchanged until a search is entered", () => ... |
b78fcf061fc5cf37c744ff540cc8f1c37e5511f4121cfd420684277eff7e203b | TypeScript | 1,177 | 28 | import type { UseElementBoundingReturn } from "@vueuse/core";
import type { ZoomTransform } from "d3-zoom";
import type { UnwrapRef } from "vue";
type ElementBounding = UnwrapRef<UseElementBoundingReturn>;
const MIN_OFFSET = -50;
const MAX_OFFSET = 50;
const NODE_WIDTH = 200;
const NODE_HEIGHT = 50;
// To insert a no... |
069137b3f351a048338683777f9fe81f1fc6aaca9825c0743bcb2bf7614cc96d | TypeScript | 1,178 | 46 | import { toast } from "sonner";
import { ZodError } from "zod";
import { redirectToLogin } from "./auth";
export class ApiError extends Error {
constructor(
message: string,
public status: number,
public endpoint: string,
) {
super(message);
this.name = "ApiError";
}... |
9b87049145221b871fc44d56968be46f56cfe9121899732f56098944da33806f | TypeScript | 1,179 | 29 | import { createTestingPinia } from "@pinia/testing";
import { getLocalVue } from "@tests/vitest/helpers";
import { shallowMount } from "@vue/test-utils";
import { describe, expect, it, vi } from "vitest";
import { sanitizeHtml } from "@/directives/sanitizeHtml";
import DatasetDetails from "./DatasetDetails.vue";
con... |
3d27ecebe71a11b36283002ec1425d330174249e752eae2e0df7e0b741ca17fd | TypeScript | 1,183 | 52 | import { describe, expect, it } from "vitest";
import { useKeyedObjects } from "./keyedObjects";
describe("useKeyedObjects", () => {
it("returns the same id for the same object", () => {
const { keyObject } = useKeyedObjects();
const obj = {
a: 1,
b: 2,
} as {
... |
dab284402747a235bcff02b27089c66fd02795460b011a73e403f4ed02a8b984 | TypeScript | 1,195 | 38 | import { vi } from "vitest";
import { reactive, ref, watch } from "vue";
import type { SelectOption, useSelectMany as UseSelectMany } from "../selectMany";
import { main } from "../selectManyMain";
vi.mock("@/components/Form/Elements/FormSelectMany/worker/selectMany", () => ({
useSelectMany,
}));
export const us... |
0005629b012cffaeca1b28479ebc4d11dbb8b020c50e9bf1f8cd89d99f9901e9 | TypeScript | 1,198 | 33 | import { getLocalVue } from "@tests/vitest/helpers";
import { shallowMount } from "@vue/test-utils";
import axios from "axios";
import flushPromises from "flush-promises";
import { describe, expect, it, vi } from "vitest";
import UserDatasetPermissions from "./UserDatasetPermissions.vue";
import GAlert from "@/compone... |
e4b3077293e781473b44c31e04a569db64934e1c0d9b5f99cb87c5e889b226f9 | TypeScript | 1,198 | 39 | import { describe, expect, it } from "vitest";
import { parseBool } from "./parseBool";
describe("parseBool", () => {
it("should return true for boolean true", () => {
expect(parseBool(true)).toBe(true);
});
it("should return false for boolean false", () => {
expect(parseBool(false)).toBe... |
69d15f792eafcb766cdeeb526e92b9f9b6e1bde9ad42999d7aa6a5556dbb8c5b | TypeScript | 1,201 | 37 | import { type MaybeRefOrGetter, toValue } from "@vueuse/core";
import { computed } from "vue";
import { useRoute, useRouter } from "vue-router";
/** use a route query parameter as a boolean computed */
export function useRouteQueryBool(
parameter: MaybeRefOrGetter<string>,
defaultValue: MaybeRefOrGetter<boolea... |
ec2b74a8561c559913868855ba98135976b8e35d593a961343432085aa3924d0 | TypeScript | 1,209 | 33 | import { getLocalVue } from "@tests/vitest/helpers";
import { mount } from "@vue/test-utils";
import { describe, expect, it } from "vitest";
import ProgressBar from "./ProgressBar.vue";
const localVue = getLocalVue();
describe("ProgressBar", () => {
it("distinguishes completed, failed, running and waiting counts... |
7aa565f0584cec8d55bf577e95108e9e6c8278c095ac9676e24ce4f4d599462c | TypeScript | 1,221 | 38 | import { getLocalVue } from "@tests/vitest/helpers";
import { mount } from "@vue/test-utils";
import { describe, expect, it } from "vitest";
import DatasetPermissionsForm from "./DatasetPermissionsForm.vue";
const localVue = getLocalVue();
function mountForm(checked: boolean) {
return mount(DatasetPermissionsFor... |
cb1f125392b6f4beaa8a4609fa2330f7e65aefd6593a6655e32c764ff3734c7d | TypeScript | 1,224 | 32 | /**
* This module provides composable functions for working with different types (views) of history objects.
* Containing different amounts of required information about a history object depending on the use case.
*/
import { computed, onMounted } from "vue";
import type { HistorySummaryExtended } from "@/api";
imp... |
5728b01c6eddf4fc52236692c95320d41854258ac94103cd70174ee93e26f837 | TypeScript | 1,226 | 31 | import { test, expect } from "@playwright/test";
test.describe("Landing page (mock mode)", () => {
test("renders welcome heading and the mock-only login button", async ({
page,
}) => {
await page.goto("/");
await expect(
page.getByRole("heading", { name: /welcome to code ca... |
4dfba59fa9e81a9928ffb5815f2a824dc3d0350c283f745bb6a6afd49f1fe1a3 | TypeScript | 1,228 | 29 | /**
* Sets `innerHTML` without cleaning it. This is the named alternative to raw
* `v-html` for the rare content that only the Galaxy server, shipped client
* code or the operator's config files can produce and that DOMPurify would
* alter (see `v-sanitize-html` for everything else). Admin-only content entered
* t... |
c43a0f9d98ab593d49fce71a204e06636d0b872da0a8319967b9e91d1f84f428 | TypeScript | 1,237 | 32 | import { getLocalVue } from "@tests/vitest/helpers";
import { mount } from "@vue/test-utils";
import { describe, expect, it, vi } from "vitest";
import { sanitizeHtml } from "@/directives/sanitizeHtml";
import TextSummary from "./TextSummary.vue";
const DESCRIPTION = "Trimmed <b>paired</b> reads";
function mountSum... |
68f95468dd9e00389bf087e3e0f470491c3ca222aa456a7366e1e7a50a9d0813 | TypeScript | 1,239 | 37 | import { describe, it, expect, vi, beforeEach, afterEach } from "vitest";
beforeEach(() => {
vi.stubEnv(
"VITE_PROJECT_ENCRYPTION_KEY",
"f1d2e3a4c5b6a78902e1f0d3c4b5a6e7",
);
});
afterEach(() => {
vi.unstubAllEnvs();
vi.restoreAllMocks();
});
describe("crypto util", () => {
it("de... |
868ecfddff84f4751e913dca2fb6cfb741cc7bbdcc3eff58cd3f787783252a9f | TypeScript | 1,245 | 22 | import { describe, expect, it, vi } from "vitest";
import { createMemoryHistory, createRouter } from "vue-router";
import storageRoutes from "./storage-routes";
vi.mock("@/components/User/DiskUsage/Management/StorageManager.vue", () => ({ default: {} }));
vi.mock("@/components/User/DiskUsage/StorageDashboard.vue", ()... |
973987c786a65a5c9e5de27dff148360ab7cd8b69c91476f5f3dc0b952750ac0 | TypeScript | 1,246 | 41 | import { getLocalVue } from "@tests/vitest/helpers";
import { mount } from "@vue/test-utils";
import { describe, expect, it } from "vitest";
import type { ExportRecord } from "@/components/Common/models/exportRecordModel";
import ExportRecordDetails from "./ExportRecordDetails.vue";
const localVue = getLocalVue();
... |
85c2705c49ea4e88ff7fb04ddb34dd3dab6808b882b3ba4076fad043fc343c3f | TypeScript | 1,257 | 38 | // abstractions for dealing with workflows labels and
// connecting them to the Markdown editor
import type { Steps } from "@/stores/workflowStepStore";
type WorkflowLabelKind = "input" | "output" | "step";
export interface WorkflowLabel {
label: string;
type: WorkflowLabelKind;
}
export type WorkflowLabels... |
943e17fb6e8e7397f636ef85b00f9ecd5bb9166d85d1327bafa0449f5d2d98a0 | TypeScript | 1,260 | 30 | import { describe, expect, it } from "vitest";
import {
getHistoryUploadActionErrorMessage,
getHistoryUploadBlockReason,
getHistoryUploadWarningMessage,
} from "./historyUpload";
describe("historyUpload", () => {
it("returns archived when history is archived", () => {
const reason = getHistory... |
1af6ab6968731b73470eb0a3e415351aa19bc7cfa9c3a7ec300f138047907a07 | TypeScript | 1,261 | 45 | import { onMounted, type Ref, ref } from "vue";
import { fetchUserExportRecords } from "@/api/exports";
import type { ExportRecord } from "@/components/Common/models/exportRecordModel";
/**
* Composable to track remote exports (exports to file sources).
* Fetches export records from the API and provides reactive da... |
69d50e85efa1ec507bf40c9e968050bac21f80fab18300109b6b69245afa18f9 | TypeScript | 1,267 | 26 | import type { Middleware } from "openapi-fetch";
import { getPendingAbortSignal, SKIP_PENDING_REQUESTS_HEADER } from "@/api/pendingRequests";
/**
* Attaches the shared pending-requests signal to every ``GalaxyApi`` request.
* The ``openapi-fetch`` client uses native ``fetch()`` so the axios
* interceptor does not ... |
3794089cc8f87e01f02b7cdb170dc77c6d9cc4fde9fd4417be442e8fc86180fe | TypeScript | 1,269 | 41 | import { onMounted, ref } from "vue";
import { GalaxyApi } from "@/api";
import { errorMessageAsString } from "@/utils/simple-error";
/**
* One-shot loader for the AI history-summary endpoint. Fetches on mount;
* exposes loading / error / summary refs for the view.
*/
export function useHistoryGraphSummary(history... |
6a434acbaf2a75366872742eaa580943f0df3ee2aaf472b8a23acde0f5814143 | TypeScript | 1,269 | 39 | import { getLocalVue } from "@tests/vitest/helpers";
import { mount } from "@vue/test-utils";
import { createPinia, setActivePinia } from "pinia";
import { beforeEach, describe, expect, it, vi } from "vitest";
import { ref } from "vue";
import { mockOffset } from "./test_fixtures";
import Draggable from "./Draggable.... |
5875a850f276d08c134f881aff056856e5f2e02f1af534cab8ae695a19abdaf2 | TypeScript | 1,275 | 29 | import { createTestingPinia } from "@pinia/testing";
import { getLocalVue } from "@tests/vitest/helpers";
import { mount } from "@vue/test-utils";
import flushPromises from "flush-promises";
import { describe, expect, it, vi } from "vitest";
import { sanitizeHtml } from "@/directives/sanitizeHtml";
import EmailReport... |
6dc7b6a72312596614351d1ed18441f6edb77b883f561a6dc39bd86e07615a72 | TypeScript | 1,281 | 41 | export function extractEmbeddedJs(inputString: string, fieldRegex?: RegExp): { fragment: string; start: number }[] {
let i = 0;
let end = inputString.length;
if (fieldRegex) {
const fieldMatch = fieldRegex.exec(inputString);
if (fieldMatch && fieldMatch.length) {
i = fieldMatch.i... |
67230ed76524a653d59c2f35e38bed25c394f043b0414e41edd83e1afca9b5f8 | TypeScript | 1,284 | 28 | import type { Middleware } from "openapi-fetch";
import { isForeignHtmlResponse, NO_CACHE_HEADERS, REQUEST_ID_HEADER } from "@/api/staleCacheRetry";
/** ``openapi-fetch`` counterpart of ``installStaleCacheRetryInterceptor``, see ``@/api/staleCacheRetry``. */
export const staleCacheRetryMiddleware: Middleware = {
... |
398a43abecff76f9e6b579eee7a988e9843e8651d5d09062b525e9c6131685f6 | TypeScript | 1,287 | 36 | import { useElementBounding } from "@vueuse/core";
import { type ComputedRef, onUnmounted, type Ref, unref, watch } from "vue";
import type { useWorkflowStateStore } from "@/stores/workflowEditorStateStore";
export function useNodePosition(
nodeRef: Ref<HTMLElement | null>,
stepId: number,
workflowStateSt... |
391fed316230aff7d40aaef8d21da11da2fb01ab5954c7971bcdbb7ba3ca5bba | TypeScript | 1,294 | 35 | import "ag-grid-community/styles/ag-grid.min.css";
import "ag-grid-community/styles/ag-theme-alpine.min.css";
import type { GridApi, GridReadyEvent } from "ag-grid-community";
import { defineAsyncComponent, nextTick, ref } from "vue";
// ag-grid-vue3 is a Vue 3 component; under the app's MODE 2 compat its `v-model` w... |
54e81669a0c610d64cfa1c2f94191ed80f2d9050094049c9e93204c1a085bc54 | TypeScript | 1,295 | 32 | import { getLocalVue } from "@tests/vitest/helpers";
import { mount } from "@vue/test-utils";
import { describe, expect, it } from "vitest";
import UploadTableNameCell from "./UploadTableNameCell.vue";
function mountCell(props: { value: string; state?: boolean | null }) {
return mount(UploadTableNameCell, { props... |
0dee9ca28851265528443ccdd8afb2a0e166cfb1bb0ef037dfb36e44fdc25704 | TypeScript | 1,307 | 45 | import { type Ref, ref } from "vue";
import { getRemoteEntriesAt } from "@/components/Upload/utils";
import type { ListUriResponse, RemoteDirectory, RemoteFile } from "./types";
export function useFileSetSources(isBusy: Ref<boolean>) {
const pasteData = ref<string[][]>([] as string[][]);
const tabularDataset... |
173cb665c4f8b43e77a72aa2af4940faf7c2a79d4ab04ab916cc2540575a7de2 | TypeScript | 1,310 | 45 | // Alphanumeric/natural sort fn
export function naturalSort(a = "", b = ""): number {
// setup temp-scope variables for comparison evauluation
const re = /(-?[0-9.]+)/g;
const x = a.toString().toLowerCase() || "";
const y = b.toString().toLowerCase() || "";
const nC = String.fromCharCode(0);
co... |
88b5f9adc532ba6eabd2ef956cbd7c859e6d04bc40c43f4005c7f3a5374af9ad | TypeScript | 1,310 | 44 | import type { Plugin } from "@/api/plugins";
export function getRequiresDataset(plugin?: Plugin): boolean {
return plugin?.params?.dataset_id?.required || false;
}
export function getTestExtensions(plugin?: Plugin): string[] {
const results: string[] = [];
if (plugin?.data_sources) {
for (const da... |
290a807f55f8b2b04ee6f357cdd3ab75cabebc58f3f2be78bb970f922afff340 | TypeScript | 1,312 | 41 | import { describe, expect, it } from "vitest";
import { capitalizeFirstLetter, pluralize } from "./strings";
describe("capitalizeFirstLetter", () => {
it("capitalizes a normal string", () => {
expect(capitalizeFirstLetter("google")).toBe("Google");
});
it("trims whitespace", () => {
expec... |
f3fd720158b8242ed2c2926797863b043c0458e5602fa4aab0b29414615a6991 | TypeScript | 1,312 | 37 | import { GalaxyApi } from "@/api";
import { rethrowSimple } from "@/utils/simple-error";
import { useGenericMonitor } from "./genericTaskMonitor";
export const DEFAULT_POLL_DELAY = 10000;
const DEFAULT_EXPIRATION_TIME = 1000 * 60 * 60 * 24; // 24 hours
export const READY_STATE = "READY";
const PENDING_STATE = "PENDI... |
6a3c37a59215a1f0e7746722bcb4e409a152660b031e767e432860659958be1c | TypeScript | 1,314 | 33 | import { getLocalVue } from "@tests/vitest/helpers";
import { mount } from "@vue/test-utils";
import { createPinia } from "pinia";
import { describe, expect, it, vi } from "vitest";
import PairedDatasetCellComponent from "./PairedDatasetCellComponent.vue";
function mountPairedCell() {
const context = { pinia: cre... |
ee3906b11fd7cb4581d34235da38619728939321629c17550b5c21e8aede8e9a | TypeScript | 1,323 | 30 | import { createTestingPinia } from "@pinia/testing";
import { getLocalVue } from "@tests/vitest/helpers";
import { mount } from "@vue/test-utils";
import flushPromises from "flush-promises";
import { describe, expect, it, vi } from "vitest";
import { sanitizeHtml } from "@/directives/sanitizeHtml";
import MarkdownDef... |
6307d488d31771462f85d59c779699861ee921ba37529625baf01a5541719751 | TypeScript | 1,328 | 31 | import { getLocalVue } from "@tests/vitest/helpers";
import { mount, shallowMount } from "@vue/test-utils";
import { describe, expect, it, vi } from "vitest";
import { sanitizeHtml } from "@/directives/sanitizeHtml";
import NodeInvocationText from "./NodeInvocationText.vue";
describe("NodeInvocationText", () => {
... |
3e74abea826509f4a34bdb6d10d6158a6ed86215feae99430aae882feb3c54e9 | TypeScript | 1,329 | 31 | import { computed, type Ref, ref, watch } from "vue";
import type { DatatypesMapperModel } from "@/components/Datatypes/model";
import { terminalFactory } from "@/components/Workflow/Editor/modules/terminals";
import { useWorkflowStores } from "@/composables/workflowStores";
import type { Step, TerminalSource } from "... |
5e6d9e5a612a2ea60d0879b20cfffb31dab69652d855d0852bde0584066fc206 | TypeScript | 1,330 | 33 | import { shallowMount } from "@vue/test-utils";
import { describe, expect, it } from "vitest";
import { defineComponent } from "vue";
import GFormInput from "@/components/BaseComponents/Form/GFormInput.vue";
describe("vitest setup createStubs hook", () => {
it("keeps v-model on a shallow-mounted component that op... |
6ffb8ec60e1d6b0808ac76a36e93c7fee96b05e45747742c485ce10e5a777d81 | TypeScript | 1,330 | 29 | import { createTestingPinia } from "@pinia/testing";
import { getLocalVue, withPlugins } from "@tests/vitest/helpers";
import { mount } from "@vue/test-utils";
import { describe, expect, it, vi } from "vitest";
import HistoryStorageOperationsIndicator from "./HistoryStorageOperationsIndicator.vue";
import GPopover fro... |
d8c068c6bbd6ed40a1ec05c0a462a1788209b1892f0b6712e0b8d48c6ef386f3 | TypeScript | 1,338 | 39 | interface Workflow {
id: string;
name: string;
owner: string;
tags: string[];
deleted: boolean;
published: boolean;
description: string;
create_time: string;
update_time: string;
annotations: string[];
show_in_tool_panel: boolean;
latest_workflow_uuid: string;
}
export f... |
80402611d91bf3117340d7db6bb7caf20ac81b06dacc7d8aa438052d55ab6d01 | TypeScript | 1,341 | 37 | import { describe, expect, it } from "vitest";
import { effectScope, nextTick, ref } from "vue";
import { useScrollEdges } from "./useScrollEdges";
/** The test DOM has no layout, so the row gets fixed scroll metrics */
function makeRow(scrollWidth: number, clientWidth: number): HTMLElement {
const row = document... |
0dc01986b5062b30ddd3d8902290e0b333106e11e4965c0d79c0b5fe2d28f9c3 | TypeScript | 1,345 | 26 | import { cancelPendingRequests } from "@/api/pendingRequests";
import { useEntryPointStore } from "@/stores/entryPointStore";
import { useHistoryStore } from "@/stores/historyStore";
import { useNotificationsStore } from "@/stores/notificationsStore";
/**
* Tear down every long-lived connection and cancel every in-fl... |
54fd2c0ec6a3700ba73aed11bd1c581278d179d7da7d35a8dac6bca37ea94800 | TypeScript | 1,349 | 44 | import { emittedArg, getLocalVue } from "@tests/vitest/helpers";
import { mount } from "@vue/test-utils";
import { describe, expect, it } from "vitest";
import GDateTime from "./GDateTime.vue";
const localVue = getLocalVue(true);
async function mountGDateTime(props: object) {
const wrapper = mount(GDateTime as o... |
4f0854b54b1002352e5f3dbe5215dc078f92d3b9b65c0cb0e12ef746e11714e9 | TypeScript | 1,352 | 46 | import { GalaxyApi } from "@/api";
import { rethrowSimple } from "@/utils/simple-error";
import { useGenericMonitor } from "./genericTaskMonitor";
const SUCCESS_STATE = "SUCCESS";
const FAILURE_STATE = "FAILURE";
const DEFAULT_POLL_DELAY = 10000;
const DEFAULT_EXPIRATION_TIME = 1000 * 60 * 60 * 24; // 24 hours
/**
... |
3acc965dd8abb49c59034510b8a02a8e4b0b12b9fdc8b562ee683cfda83b38c2 | TypeScript | 1,353 | 31 | import { createTestingPinia } from "@pinia/testing";
import { getLocalVue } from "@tests/vitest/helpers";
import { mount } from "@vue/test-utils";
import flushPromises from "flush-promises";
import { describe, expect, it, vi } from "vitest";
import { sanitizeHtml } from "@/directives/sanitizeHtml";
import ToolHelpMar... |
bee1cad497922ce5387e50deb553b4be2c61613844214a277a5471dbb1117cb7 | TypeScript | 1,357 | 38 | import axios from "axios";
import { type Input, permissionInputParts } from "@/composables/datasetPermissions";
import { withPrefix } from "@/utils/redirect";
export function getPermissionsUrl(historyId: string) {
return `/history/permissions?id=${historyId}`;
}
export interface PermissionsResponse {
inputs:... |
735bceec50357372126860cb47e7cd0141c10dd993123e873144601f1e66d9cb | TypeScript | 1,361 | 37 | export type HistoryUploadBlockReason = "archived" | "deleted";
type UploadTargetHistory = {
archived?: boolean;
deleted?: boolean;
};
const BLOCK_WARNING_BY_REASON: Record<HistoryUploadBlockReason, string> = {
archived: "This history has been archived and cannot receive uploads. Select a different history... |
cc3b888b525838f5a1298611b6477034fbfb4594910d41da0fd417da0b9ade07 | TypeScript | 1,366 | 38 | /**
* Cached fetcher for `/api/jobs/{job_id}/parameters_display`. The endpoint
* carries both the tool parameter tree and the job outputs — naming follows
* the established `jobStore` convention.
*/
import { defineStore } from "pinia";
import { GalaxyApi } from "@/api";
import type { JobDisplayParametersSummary }... |
4b73434e2a2dcb24e0f7c74b0d6e9e30d8eca27421154afa2f4418483d2e7b5c | TypeScript | 1,367 | 37 | import { mount } from "@vue/test-utils";
import { describe, expect, it, vi } from "vitest";
import { defineComponent } from "vue";
import GForm from "./GForm.vue";
describe("GForm", () => {
it("hands the native submit event to a parent's @submit.prevent handler", async () => {
const onSubmit = vi.fn();
... |
85eb2a8dc36825ba6929ad9649e9d7beaf488e32b7cf172f20b252fccdad0455 | TypeScript | 1,367 | 42 | import { beforeEach, describe, expect, it, vi } from "vitest";
import { copyLink } from "./utilities";
const writeText = vi.fn();
Object.defineProperty(navigator, "clipboard", {
writable: true,
configurable: true,
value: {
writeText,
},
});
describe("copyLink", () => {
beforeEach(() => {... |
1ed7c20fbbd69a66bb6bf1faa233bc4ac06c3ff23556f48b8ce0522fe995ed0c | TypeScript | 1,370 | 51 | import { Hsluv } from "hsluv";
export const colors = {
black: "#000",
blue: "#004cec",
turquoise: "#00bbd9",
green: "#319400",
lime: "#68c000",
orange: "#f48400",
yellow: "#fdbd0b",
red: "#e31920",
pink: "#fb00a6",
} as const;
export type Color = keyof typeof colors;
export type He... |
046b2bd492090adb4fbe40485f450332e8827804257b43972df726bdb6f33391 | TypeScript | 1,373 | 42 | /**
* Composable for validating upload item properties.
* Provides validation functions for item names and name restoration logic.
*
* @example
* ```typescript
* const { isNameValid, restoreOriginalName } = useUploadItemValidation();
*
* // In template
* <BFormInput :state="isNameValid(item.name)" @blur="resto... |
4eff22a9ff42478e3bcc06be5898a80657caee5a3fd39890284ed1894801672d | TypeScript | 1,375 | 48 | import type { MaybeRef } from "@vueuse/core";
import { useStepper } from "@vueuse/core";
/**
* Represents a step in a wizard.
*/
export interface WizardStep {
/**
* The label of the step. It will be displayed in the wizard navigation.
*/
label: MaybeRef<string>;
/**
* The instructions for... |
771adca5a29ca2cc305b1341a719b4191b68f894ff97c5935c76b355d8c5beca | TypeScript | 1,378 | 37 | import type { IconDefinition } from "@fortawesome/fontawesome-svg-core";
export type ActivityVariant = "primary" | "danger" | "disabled";
export interface Activity {
// determine wether an anonymous user can access this activity
anonymous?: boolean;
// description of the activity
description: string;
... |
2a1d5d158a50d6627300b9822603424280c1180c0e6130e0b59681d6a33887a7 | TypeScript | 1,384 | 35 | import { computed } from "vue";
import { getOIDCIdpsWithRegistration } from "@/components/User/ExternalIdentities/ExternalIDHelper";
import { useConfig } from "@/composables/config";
/** Where registering leads; `external` is an OIDC provider's own endpoint, outside the app's router */
export interface RegistrationTa... |
bfacab82199961bc858e1f54de55db658b48e0c1d88c0bfbd2fd8e01f38d2453 | TypeScript | 1,397 | 43 | import { ref } from "vue";
import type { GenericPair } from "@/components/Collections/common/buildCollectionModal";
import { autoPairWithCommonFilters, type HasName } from "./pairing";
import AutoPairing from "./common/AutoPairing.vue";
export function useAutoPairing<T extends HasName>() {
const currentForwardF... |
947c9f13ce0eb7c61c7734a9ec4d3c3f06ee257d94c16ef62094a91f126e5008 | TypeScript | 1,399 | 43 | import { GalaxyApi, type GalaxyApiPaths } from "@/api";
import { rethrowSimple } from "@/utils/simple-error";
// TODO: Move these functions to broadcastStore and refactor other calls to go through the store
export async function fetchAllBroadcasts() {
const { data, error } = await GalaxyApi().GET("/api/notificati... |
275716088ba30587c40126009b25413cd17ea3aa8939e089d3e7206cf15ec2e2 | TypeScript | 1,411 | 43 | import { storeToRefs } from "pinia";
import { computed, ref } from "vue";
import { useConfigStore } from "@/stores/configurationStore";
/**
* Shared open/close state for the global command palette. The palette
* component is mounted once in `entry/analysis/App.vue`; any consumer
* (hotkey, masthead button) can ope... |
92e87b6b908282391d6d82d7ac473a5483e6df52aeb53cfcd9e0194aefc5827a | TypeScript | 1,413 | 43 | import { describe, expect, it } from "vitest";
import { deepEach } from "./utils";
describe("deepEach", () => {
it("recurses into every nested object by default", () => {
const tree = { a: { b: { c: {} } } };
const seen: object[] = [];
deepEach(tree, (node) => {
seen.push(node)... |
c417be3e43a8893a7129d9eef0534ebbfe784b99cabe16fc063dbf1fa1ac949e | TypeScript | 1,414 | 45 | import { type MaybeRefOrGetter, resolveUnref } from "@vueuse/core";
import { useAnimationFrame } from "./animationFrame";
export type Size = { width: number; height: number };
type CallbackValue = { clientSize: Size; scrollSize: Size };
export type AnimationFrameResizeObserverCallback = (newValue: CallbackValue, oldV... |
95044272e742dd2dde2856cae1c414279b5f98ffdfaae0887f4be0d977ecd341 | TypeScript | 1,418 | 37 | import { getLocalVue } from "@tests/vitest/helpers";
import { mount } from "@vue/test-utils";
import { describe, expect, it } from "vitest";
import { STANDARD_FILE_SOURCE_TEMPLATE, STANDARD_OBJECT_STORE_TEMPLATE } from "./test_fixtures";
import EditSecretsForm from "./EditSecretsForm.vue";
const localVue = getLocalV... |
ca94fc74e983794dcbdfc08ed18f13c1988557c02f71d095c8582fdbe5a65f2a | TypeScript | 1,419 | 47 | import axios from "axios";
import { withPrefix } from "@/utils/redirect";
import { rethrowSimple } from "@/utils/simple-error";
/**
* Interface for datatype to visualization mapping
*/
export interface DatatypeVisualization {
datatype: string; // Datatype extension (e.g., "h5", "tabular")
visualization: str... |
0b69940a2403066678bd0edc1a52c785f1f76156bad6b72f585a63c65933e091 | TypeScript | 1,420 | 42 | import { describe, expect, it } from "vitest";
import { describeFailures, settleEach } from "./settleEach";
describe("settleEach", () => {
it("runs every item in order and continues past failures", async () => {
const seen: number[] = [];
const operation = async (n: number) => {
seen.p... |
b79b4cfe6ebbf0e392d9ee477d1aee1ec330cb08bfc58215f1dadc04074f09ff | TypeScript | 1,421 | 35 | import { getLocalVue } from "@tests/vitest/helpers";
import { mount } from "@vue/test-utils";
import { describe, expect, it } from "vitest";
import Index from "./Index.vue";
const localVue = getLocalVue();
function mountIndex() {
return mount(Index as object, {
global: { ...localVue, stubs: { ...localVue... |
8bb179893d306b1f932271e2ed27dcf230745db6cb876552f3add81b9072584c | TypeScript | 1,429 | 37 | import { describe, expect, it } from "vitest";
import { generateStepLabel } from "./useInvocationMessageStepData";
describe("generateStepLabel", () => {
it("returns basic step label when no additional info available", () => {
const step = { type: "tool" };
expect(generateStepLabel(0, step)).toBe("... |
6ff29c9723495bdac18441a048e2a9cc71089d4e9da80e8973ffa83e4dc00788 | TypeScript | 1,431 | 37 | import { GAlert } from "@galaxyproject/galaxy-ui";
import { mount } from "@vue/test-utils";
import { describe, expect, it } from "vitest";
import { h } from "vue";
import LoadingSpan from "./LoadingSpan.vue";
describe("LoadingSpan", () => {
it("announces its message as a status", () => {
const wrapper = m... |
b219f63c4bd3a1708baf03d1b34c3f0bfe38757217cfcf748af981ea257c0130 | TypeScript | 1,446 | 38 | import { mount } from "@vue/test-utils";
import { describe, expect, it } from "vitest";
import { defineComponent, h } from "vue";
import { createMemoryHistory, createRouter, RouterView } from "vue-router";
import { zipImportResultsLocation, zipImportResultsProps } from "./resultsRoute";
const Results = defineComponen... |
575b03f1d6b51a9348af5ccba2cd56f6771e28c7522ec20d5378973dfdb3c9db | TypeScript | 1,447 | 44 | import { defineStore } from "pinia";
import { computed } from "vue";
import { type HDADetailed, type HistoryContentItemBase, isInaccessible } from "@/api";
import { fetchDatasetDetails } from "@/api/datasets";
import { useKeyedCache } from "@/composables/keyedCache";
export const useDatasetStore = defineStore("datase... |
72f17f2bc41078d59383494d6eb3cca0cb4cd4d69dec2f3ab49273b4e2065ac7 | TypeScript | 1,467 | 38 | import { getLocalVue } from "@tests/vitest/helpers";
import { mount } from "@vue/test-utils";
import { describe, expect, it, vi } from "vitest";
import { nextTick } from "vue";
import TagsSelectionDialog from "./TagsSelectionDialog.vue";
vi.mock("@/stores/userTagsStore", () => ({
useUserTagsStore: vi.fn(() => ({
... |
6e128d51bd4de760e27b8c5a2faa6df5bd5b4f67faa972d0335b414351f50f6a | TypeScript | 1,476 | 30 | import type { IconDefinition } from "@fortawesome/fontawesome-svg-core";
import { type RecentPaletteItem, useRecentPaletteItems } from "@/composables/useRecentPaletteItems";
import type { PaletteItem } from "../types";
import { rankPaletteItems } from "../utilities";
/** How one provider renders the entities the pal... |
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