sha256 stringlengths 64 64 | language stringclasses 28
values | size int32 1 491k | lines int32 1 23.2k | content stringlengths 1 200k |
|---|---|---|---|---|
1b7755efb4556dc005dc8f7dad1fa0420ea5e5339c2c008f63ad23f66434165b | C++ | 2,911 | 69 | #include "content/views/view_hex_editor.hpp"
#include "content/views/view_pattern_editor.hpp"
#include "content/views/view_pattern_data.hpp"
#include "content/views/view_information.hpp"
#include "content/views/view_about.hpp"
#include "content/views/view_tools.hpp"
#include "content/views/view_data_inspector.hpp"
#inc... |
080dea0e4ee7cf83bf183c5221ccffeef6e0998b8cb9a72bc0a6956b4565577f | C++ | 2,912 | 80 | #include "CStimulusSender.h"
#include <iostream>
#include <system/ovCTime.h>
// @fixme Should use some logging facility instead of std::cout
namespace TCPTagging {
CStimulusSender::~CStimulusSender() { if (m_oStimulusSocket.is_open()) { m_oStimulusSocket.close(); } }
bool CStimulusSender::connect(const char* sAddre... |
35310a215342c94bcbb73aabb9a6fd34ddeb46cfd19ae52e823802ffa625b6ed | C++ | 2,912 | 79 | #include "content/popups/hex_editor/popup_hex_editor_resize.hpp"
#include "content/views/view_hex_editor.hpp"
#include <fonts/tabler_icons.hpp>
namespace hex::plugin::builtin {
PopupResize::PopupResize(const ImHexApi::HexEditor::ProviderRegion &selection) : m_selection(selection), m_actualSize(0), m_selectionSiz... |
65a2b0f00ae563268e33c610b6217a4953c038debc177055692dbe77b17c21c9 | C++ | 2,916 | 78 | //FastQTL: Fast and efficient QTL mapper for molecular phenotypes
//Copyright (C) 2015 Olivier DELANEAU, Alfonso BUIL, Emmanouil DERMITZAKIS & Olivier DELANEAU
//
//This program is free software: you can redistribute it and/or modify
//it under the terms of the GNU General Public License as published by
//the Free Soft... |
6c3359562fde46be78242f7a5995a38e39dc0a59d606cf1642d3b6c94766d8ad | C++ | 2,924 | 96 | //-----------------------------------------------------
// Copyright 2014 Ontario Institute for Cancer Research
// Written by Jared Simpson (jared.simpson@oicr.on.ca)
// Released under the GPL
//-----------------------------------------------------
//
// Data structure for performing proximity queries
// against a set ... |
c8a2c6473e85459ad4aad0bf51a7f42593e3a440803198bd7363bd8819b78ab4 | C++ | 2,931 | 60 | ///-------------------------------------------------------------------------------------------------
///
/// \file CSettingViewFactory.cpp
/// \copyright Copyright (C) 2022 Inria
///
/// This program is free software: you can redistribute it and/or modify
/// it under the terms of the GNU Affero General Public License... |
5a17774f2999766cf5a1ca46901cb2b5054c3b67b43572f7042acf7d2bf9a557 | C++ | 2,939 | 100 | /*******************************************************************************
Copyright 2006-2012 Lukas Käll <lukas.kall@scilifelab.se>
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at
http:... |
7e73c39c89453e7de3715c7befb984557c636c42650a7401e304116c7f2baad2 | C++ | 2,946 | 88 | //FastQTL: Fast and efficient QTL mapper for molecular phenotypes
//Copyright (C) 2015 Olivier DELANEAU, Alfonso BUIL, Emmanouil DERMITZAKIS & Olivier DELANEAU
//
//This program is free software: you can redistribute it and/or modify
//it under the terms of the GNU General Public License as published by
//the Free Soft... |
dc641bc4ff6a070d5c767512ac97a4430a5b60e20718c6aec0e98befc9f0fcc3 | C++ | 2,954 | 75 | #include "gtest/gtest.h"
#include "Eikonal.h"
TEST(Improve3D, DecreaseRMSError) {
Eikonal data(false);
std::vector<float> rmsError;
//low granularity
data.filename_ = TEST_DATA_DIR + std::string("sphere334");
data.maxBlocks_ = 1000;
EXPECT_NO_THROW(data.solveEikonal());
// find the analytical solution to ... |
68e9fe37c6421f5af6b1186d5f71c810e53df31a1cf2a011b1a78b0c542b10de | C++ | 2,956 | 85 | ///-------------------------------------------------------------------------------------------------
///
/// \file TAttributeHandler.cpp
/// \copyright Copyright (C) 2022 Inria
///
/// This program is free software: you can redistribute it and/or modify
/// it under the terms of the GNU Affero General Public License a... |
c8239178a84b21067fbc12a3828099776915890c01c7c5e33a4fc95f86a23acd | C++ | 2,964 | 133 | //
// sequenceUtils.cpp
// BEDTools
//
// Created by Aaron Quinlan Spring 2009.
// Copyright 2009 Aaron Quinlan. All rights reserved.
//
// Summary: Contains common functions for manipulating DNA sequences.
//
// Acknowledgment: I am grateful to Michael Stromberg for the code below to
// reverse... |
4b1726533b6012b4f9058812c771dd30e8a13e64b5d15f973b2310b110a4d05b | C++ | 2,976 | 91 | /******************************************************************************
*
* File: abort.c
*
* Copyright (c) 1984, 1985, 1986, 1987, 1988, 1989, 1990
* Duke University
*
******************************************************************************/
#include "coreneuron/utils/nrnoc_aux.hpp"
/*---------... |
5db00698e48f1970702584e72545dc954c774f8d233928309dc1429373c7ee26 | C++ | 2,976 | 84 | /**
* SPDX-FileCopyrightText: Inria <florent.leray@inria.fr>
* SPDX-License-Identifier: AGPL-3.0-only
* @file AbstractDriver.cpp
* @brief Implementation file for the AbstractDriver class.
*
* This file implements the non-pure virtual methods of the AbstractDriver
* base class, providing default functionality for... |
7857aa887a18e70357ed4ed82e5698ea0ca0b56e3a98b24388278d3b8e13af91 | C++ | 2,976 | 106 | /*
# =============================================================================
# Copyright (c) 2016 - 2022 Blue Brain Project/EPFL
#
# See top-level LICENSE file for details.
# =============================================================================.
*/
#include "coreneuron/network/netcvode.hpp"
#include "core... |
9023e3e188041bee9da0f29cb1eba0bd28253989273b1e73c0f5c4c9bd72668d | C++ | 2,980 | 92 | /*******************************************************************************
Copyright 2006-2012 Lukas Käll <lukas.kall@scilifelab.se>
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at
http:... |
558041060782d43a915eebb1db145cb3e100256ad2c250a48a9cf32d53ae04e5 | C++ | 2,987 | 95 | ///-------------------------------------------------------------------------------------------------
///
/// \file CVisualizationManager.cpp
/// \copyright Copyright (C) 2022 Inria
///
/// This program is free software: you can redistribute it and/or modify
/// it under the terms of the GNU Affero General Public Licen... |
b1a095c7bffef678118e2270cabb7dd78c7c2d1681e826193f3191b5b1d7f110 | C++ | 3,019 | 86 | #include "coreneuron/nrnoc/mech_mapping.hpp"
#include "coreneuron/utils/data_layout.hpp"
#include "coreneuron/nrnoc/nrnoc_ml.h"
#include <iostream>
#include <cstring>
#include <map>
#include <stdlib.h>
namespace coreneuron {
typedef size_t Offset;
typedef int MechId;
typedef const char* VariableName;
struct cmp_str {... |
c4252eafadd23d6cd460f92adb3c8a894b5e421a7d67ea6bb391d67eed0fd46b | C++ | 3,022 | 63 | ///-------------------------------------------------------------------------------------------------
///
/// \file CAlgorithmPairwiseDecision.cpp
/// \brief Classes implementation for the Algorithm Pairwise Decision.
/// \copyright Copyright (C) 2022 Inria
///
/// This program is free software: you can redistribute it... |
72a8f33062eebbeeda418d5a7973d956fe968e2f3ed317d8f846c39e9aeed69f | C++ | 3,037 | 106 | ///----------------------------------------------
// Copyright 2011 Wellcome Trust Sanger Institute
// Written by Jared Simpson (js18@sanger.ac.uk)
// Released under the GPL
//-----------------------------------------------
//
// VariantionVariationBuilderCommon -- Common functions and data
// structures for the abstra... |
155b17d8807aa653092f41e3ac3a8cc94b45a5fff8c8939f412791919037a9d7 | C++ | 3,039 | 87 | #include "GenericVRPNServer.hpp"
#include <vrpn_Connection.h>
#include <vrpn_Button.h>
#include <vrpn_Analog.h>
#include <cstdarg>
CGenericVrpnServer* CGenericVrpnServer::m_serverInstance = nullptr;
CGenericVrpnServer::CGenericVrpnServer(const int port) : m_connection(vrpn_create_server_connection(port)) { }
CGene... |
d054f0ea2ee0daabb7901f7c3658295e97509b936b5f809f888bc4bb05ed86e4 | C++ | 3,048 | 104 | #if defined TARGET_HAS_ThirdPartyPython2 && !(defined(WIN32) && defined(TARGET_BUILDTYPE_Debug))
// Windows debug build doesn't typically link as most people don't have the python debug library.
#include "box-algorithms/ovpCBoxAlgorithmPython2.h"
#if defined(PY_MAJOR_VERSION) && (PY_MAJOR_VERSION == 2)
#ifdef TARGET... |
269b55f163f6e719ccde03e84cb596c0f60990085a34d232cd3d6c37ee69c9f6 | C++ | 3,058 | 113 | #include "CKernelLoader.hpp"
#include <iostream>
#include <string>
namespace OpenViBE {
void UpdateError(CString* error)
{
if (error) {
#if defined TARGET_OS_Linux || defined TARGET_OS_MacOS
*error = dlerror();
#elif defined TARGET_OS_Windows
LPVOID buffer = nullptr;
FormatMessage(FORMAT_... |
8bdbb14324d156f5c9d841f8d0c9bb245918fbe6b8f51289af7e7924ffe411ac | C++ | 3,059 | 102 | /* -*- mode: C++; indent-tabs-mode: nil; -*-
*
* This file is a part of LEMON, a generic C++ optimization library.
*
* Copyright (C) 2003-2009
* Egervary Jeno Kombinatorikus Optimalizalasi Kutatocsoport
* (Egervary Research Group on Combinatorial Optimization, EGRES).
*
* Permission to use, modify and distribut... |
523a1a284bd3302e384c5ac6d671716c12a4e7ea2ca05e88016405f1850cf581 | C++ | 3,065 | 90 | #include "ovpCDetectingMinMax.h"
#include <cmath>
namespace OpenViBE {
namespace Plugins {
namespace SignalProcessing {
// ________________________________________________________________________________________________________________
//
bool CDetectingMinMax::initialize()
{
ip_signalMatrix.initialize(getInputP... |
c70fd9601263b6740b18dd052754b12d84814252873afb0250ad24d12d67ab62 | C++ | 3,065 | 92 | #include "system/ovCTime.h"
#include <cmath>
#include <cassert>
// \warning On Windows, avoid "using namespace System;" here as it may cause confusion with stuff coming from windows/boost
// \note Support of C++11 steady clock:
// - From GCC 4.8.1
// - From Visual Studio 2015 (therefore a strategy is need... |
13f2e0e00682ae4085a37c67f2050f884b2284138318309a17a5e0dcf4b19b30 | C++ | 3,070 | 92 | #include <hex/api/http/tips_api.hpp>
#include <hex/api/http/api_urls.hpp>
#include <hex/helpers/http_requests.hpp>
#include <condition_variable>
#include <mutex>
#include <optional>
namespace hex {
namespace {
using namespace std::literals::string_literals;
using namespace std::literals::chrono... |
4578289bd32b4e1abd84f3f894659e757ab5f666ea97fe8d1e82303cd873e023 | C++ | 3,088 | 84 | /*
# =============================================================================
# Copyright (c) 2016 - 2022 Blue Brain Project/EPFL
#
# See top-level LICENSE file for details.
# =============================================================================.
*/
#include "coreneuron/permute/cellorder.hpp"
#define BOOS... |
83feed0f4e5d32d42d3a817b52695b5583d33c7af70aba93158b8d902a5b13a0 | C++ | 3,090 | 101 | #include "DiscordantRealigner.h"
#include "SvabaUtils.h"
#include "SeqLib/BWAAligner.h"
#ifdef QNAME
#define DEBUG(msg, read) \
if (read.Qname() == QNAME && (read.AlignmentFlag() == QFLAG || QFLAG == -1)) { std::cerr << (msg) << " read " << r << std::endl; }
#else
#define DEBUG(msg, read)
#endif
//bool Discordan... |
7eeae94c159a7dfe24810430d31a1a5afd79225b0e135fef4a8ff1f4dacfb50c | C++ | 3,094 | 81 | /*******************************************************************************
Copyright 2006-2012 Lukas Käll <lukas.kall@scilifelab.se>
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at
http:... |
2cbc122b7646b9edde4f5ab0bf43ae6cc49e1b5754b7d3ea469d51050e0af9ca | C++ | 3,113 | 97 | #include "CSinusSignalGenerator.hpp"
#include <cmath>
namespace OpenViBE {
namespace Plugins {
namespace DataGeneration {
bool CSinusSignalGenerator::initialize()
{
m_encoder.initialize(*this, 0);
// Parses box settings to try connecting to server
m_nChannel = size_t(uint64_t(FSettingValueA... |
8040457d6715a9c0d307e9c232e12cf0628858f1e2089aea5d4a2e5982c41696 | C++ | 3,113 | 100 | //FastQTL: Fast and efficient QTL mapper for molecular phenotypes
//Copyright (C) 2015 Olivier DELANEAU, Alfonso BUIL, Emmanouil DERMITZAKIS & Olivier DELANEAU
//
//This program is free software: you can redistribute it and/or modify
//it under the terms of the GNU General Public License as published by
//the Free Soft... |
4b383b314abdf96c43dafb9be445d5daaba74b76ca9175f0f0788377c0ef7e46 | C++ | 3,116 | 94 | ///-------------------------------------------------------------------------------------------------
///
/// \file uoEntryEnumeratorTest.cpp
/// \copyright Copyright (C) 2022 Inria
///
/// This program is free software: you can redistribute it and/or modify
/// it under the terms of the GNU Affero General Public Licen... |
4bcd0242a639c5b2726be4651a6dd5b011b4a490c8442ed17f6de443a12dfe76 | C++ | 3,120 | 69 | #include "ovkCMetaboxObjectDesc.h"
namespace OpenViBE {
namespace Metabox {
CMetaboxObjectDesc::CMetaboxObjectDesc(const CString& rMetaboxDescriptor, Kernel::IScenario& metaboxScenario)
: m_metaboxDesc(rMetaboxDescriptor)
, m_name(metaboxScenario.getAttributeValue(OV_AttributeId_Scenario_Name))
, m_au... |
e1a0489bc659aa890776658972af31d3ad016d7d86f4f324e5741a2191742c8d | C++ | 3,134 | 133 | // SPDX - License - Identifier: AGPL - 3.0 - only
// SPDX-FileCopyrightText: Inria <florent.leray@inria.fr>
#include "NetService.h"
namespace OpenViBE {
namespace Services {
// Definition of the static unique_ptr "d" member for Pimpl idiom
std::unique_ptr<NetServicePrivate> NetService::d = nullptr;
/**
* @brief P... |
95b49aa97591109ff82cba404a7aa1d027e1a0153a2033709213a71a37e02631 | C++ | 3,143 | 65 | ///-------------------------------------------------------------------------------------------------
///
/// \file CMatrixClassifierFgMDM.cpp
/// \brief Class implementation of Minimum Distance to Mean with geodesic filtering (FgMDM) Classifier.
/// \author Thibaut Monseigne (Inria).
/// \version 1.0.
/// \date 10/12/... |
3f6761dd24c81fc7436b73d8e7f75aba3297b5cf4747897f70a5a8fbf1fe448e | C++ | 3,147 | 70 | #if defined(TARGET_HAS_ThirdPartyMCS)
#include "ovasCConfigurationMCSNVXDriver.h"
namespace OpenViBE {
namespace AcquisitionServer {
/*_________________________________________________
Insert callback to specific widget here
Example with a button that launch a calibration of the device:
//Callback connected to a d... |
1efee9be4fc285151107c3c1e1e1f58ebfae6c57fcb3684d1f7f51b0a0a96b1a | C++ | 3,157 | 76 | ///-------------------------------------------------------------------------------------------------
///
/// \file CFloatSettingView.cpp
/// \copyright Copyright (C) 2022 Inria
///
/// This program is free software: you can redistribute it and/or modify
/// it under the terms of the GNU Affero General Public License a... |
72efcfd49264ce8dfaa3544ffbfbb4e86e71195e8baff521e2f009b0f19abfcc | C++ | 3,170 | 134 | /*
# =============================================================================
# Copyright (c) 2016 - 2022 Blue Brain Project/EPFL
#
# See top-level LICENSE file for details.
# =============================================================================.
*/
#include "coreneuron/apps/corenrn_parameters.hpp"
#defin... |
ce69cb15a79a8e56a68a372c1ab96d447019dfe8f92b160e87b8b2c597ffeec9 | C++ | 3,180 | 118 | /* -*- mode: C++; indent-tabs-mode: nil; -*-
*
* This file is a part of LEMON, a generic C++ optimization library.
*
* Copyright (C) 2003-2009
* Egervary Jeno Kombinatorikus Optimalizalasi Kutatocsoport
* (Egervary Research Group on Combinatorial Optimization, EGRES).
*
* Permission to use, modify and distribut... |
d09bc1ca0469eaa6efffd4daabac144e1ff5060ae2b3146091ba46f58fb7168c | C++ | 3,187 | 77 | ///-------------------------------------------------------------------------------------------------
///
/// \file CIntegerSettingView.cpp
/// \copyright Copyright (C) 2022 Inria
///
/// This program is free software: you can redistribute it and/or modify
/// it under the terms of the GNU Affero General Public License... |
325e98b4e1ca5bc561abb2f9203a5c9ab8837de58806335077092a7c6583281f | C++ | 3,191 | 79 | /*
# =============================================================================
# Copyright (c) 2016 - 2021 Blue Brain Project/EPFL
#
# See top-level LICENSE file for details.
# =============================================================================.
*/
/**
* @file nrn_stats.cpp
* @date 25th Dec 2014
* @br... |
6308c5f59ecd58f1388a367347f8f2fbb335be11987469eed3f5588232ac5071 | C++ | 3,191 | 124 |
/********************
PhyloBayes MPI. Copyright 2010-2013 Nicolas Lartillot, Nicolas Rodrigue, Daniel Stubbs, Jacques Richer.
PhyloBayes is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License
as published by the Free Software Foundation, either version 3 of the L... |
c81755f67f4f94c7067b07220f058567c16e81c629c315cd7a458fd0905f2967 | C++ | 3,211 | 78 | #include "content/helpers/decoded_string.hpp"
#include <hex/api/localization_manager.hpp>
#include <hex/helpers/fmt.hpp>
#include <hex/helpers/unicode.hpp>
#include <wolv/utils/string.hpp>
namespace hex::plugin::builtin {
size_t extendToWholeCodePoints(const std::vector<u8> &buffer, size_t targetSize,
... |
27d40349209d5c8c61ec0f8b698ff62761c5f87b4d6470cad94ba942bc38fafc | C++ | 3,212 | 78 | ///-------------------------------------------------------------------------------------------------
///
/// \file CBoxAlgorithmLatencyEvaluation.cpp
/// \author Yann Renard (Inria)
/// \version 1.0.
/// \copyright Copyright (C) 2022 Inria
///
/// This program is free software: you can redistribute it and/or modify
//... |
9dd24eec2c4f22eb586717a92d3b0d0a84e34f8e556f648fe38f029d8d5af442 | C++ | 3,216 | 131 |
/********************
PhyloBayes MPI. Copyright 2010-2013 Nicolas Lartillot, Nicolas Rodrigue, Daniel Stubbs, Jacques Richer.
PhyloBayes is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License
as published by the Free Software Foundation, either version 3 of the L... |
a23520a525d9beb2d481847a46da9f587e6433182b2b29ca4a35beb4789b48d3 | C++ | 3,238 | 83 | ///-------------------------------------------------------------------------------------------------
///
/// \file CBoxAlgorithmStreamedMatrixMultiplexer.cpp
/// \brief Classes implementation for the Box Signal Merger.
/// \author Yann Renard (Inria).
/// \version 1.0.
/// \copyright Copyright (C) 2022 Inria
///
/// T... |
1a3aa52cf2efc1a4ee7129aa2ed0d101fb6218f29d6a6ba21bcd200e38bc6e6a | C++ | 3,241 | 89 | ///-------------------------------------------------------------------------------------------------
///
/// \file CVisualizationWidget.cpp
/// \copyright Copyright (C) 2022 Inria
///
/// This program is free software: you can redistribute it and/or modify
/// it under the terms of the GNU Affero General Public Licens... |
14725c2f1d409e1680964732d8adc3c2c80182860798e124ceb06b74fdd86bfd | C++ | 3,249 | 80 | #include "content/popups/hex_editor/popup_hex_editor_select.hpp"
#include "content/views/view_hex_editor.hpp"
#include <hex/api/content_registry/settings.hpp>
#include <hex/api/content_registry/user_interface.hpp>
#include <content/differing_byte_searcher.hpp>
namespace hex::plugin::builtin {
PopupSelect::Popup... |
61248ccf54342ddf8198d7a8151a72feac88c90ab99f84f8567e636b1a6d351e | C++ | 3,252 | 110 | //-----------------------------------------------
// Copyright 2010 Wellcome Trust Sanger Institute
// Written by Jared Simpson (js18@sanger.ac.uk)
// Released under the GPL
//-----------------------------------------------
//
// RLBWTReaderBinary - Read a run length encoded BWT file from disk
//
#include "BWTReaderBi... |
d971672180583d6ea7a37c61251f1e1fd80c6150143feed62e5cb475ad539368 | C++ | 3,255 | 106 | /*******************************************************************************
Copyright 2006-2012 Lukas Käll <lukas.kall@scilifelab.se>
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at
http:... |
5d2641cc1621daf2cc61f4808849e40498081d18f27c4c4348d7d532fe75e0bf | C++ | 3,260 | 171 | /* -*- mode: C++; indent-tabs-mode: nil; -*-
*
* This file is a part of LEMON, a generic C++ optimization library.
*
* Copyright (C) 2003-2009
* Egervary Jeno Kombinatorikus Optimalizalasi Kutatocsoport
* (Egervary Research Group on Combinatorial Optimization, EGRES).
*
* Permission to use, modify and distribut... |
44ef53aa9e7ee39db89c867459e907279c5b83ad81807dd62a9d11602ed2314f | C++ | 3,267 | 130 | //-----------------------------------------------
// Copyright 2009 Wellcome Trust Sanger Institute
// Written by Jared Simpson (js18@sanger.ac.uk)
// Released under the GPL
//-----------------------------------------------
//
// SuffixCompareRadix
//
#include "SuffixCompare.h"
//
SuffixCompareRadix::SuffixCompareRad... |
c5df1d9ef624e1634cacd1532545a09bd915f12dac75d2efc9c7bbe69d0c1242 | C++ | 3,268 | 94 | ///-------------------------------------------------------------------------------------------------
///
/// \author Yann Renard (INRIA/IRISA).
/// \version 1.0.
/// \date 21/11/2007.
/// \copyright (C) 2022 INRIA
///
/// This program is free software: you can redistribute it and/or modify
/// it under the terms of th... |
422f89802e44eac8a49b858536fbaf1df33326576e52bb8c9bf0439bdaab2b1a | C++ | 3,282 | 109 | /*******************************************************************************
Copyright 2006-2012 Lukas Käll <lukas.kall@scilifelab.se>
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at
http:... |
bc1ce3f9d25345acad08ed4f195a5cea52141c012cabc808bc61e3eee925affc | C++ | 3,296 | 90 | ///-------------------------------------------------------------------------------------------------
///
/// \file CAlgorithmPairwiseDecisionVoting.cpp
/// \brief Classes implementation for the Algorithm Pairwise Decision Voting.
/// \author Guillaume Serrière (Inria).
/// \version 0.1.
/// \copyright Copyright (C) 20... |
d7315eddf2f75157ee1d204f4b6814312c8256e3916ee55bd78d8e30d115ecd9 | C++ | 3,307 | 92 | #include <hex/api/content_registry/settings.hpp>
#include <hex/api/content_registry/user_interface.hpp>
#include <hex/helpers/utils.hpp>
#include <windows.h>
#include <psapi.h>
#include <imgui.h>
#include <fonts/vscode_icons.hpp>
#include <hex/ui/imgui_imhex_extensions.h>
namespace hex::plugin::windows {
void... |
62ac5a7110ccfd4f432941723bc728685250581bceb3f5f90c7a229fc2c81aa8 | C++ | 3,308 | 64 | #include <vector>
#include "ovp_defines.h"
#include "toolkit/algorithms/classification/ovtkCAlgorithmPairingStrategy.h" //For comparision mecanism
#include "algorithms/ovpCAlgorithmClassifierSVM.h"
#include "box-algorithms/ovpCBoxAlgorithmOutlierRemoval.h"
#include "algorithms/ovpCAlgorithmClassifierMLP.h"
#includ... |
2393f4d3f357f3648aa4b811965bdaa9b3c4931129ead934742959f364d80a86 | C++ | 3,317 | 116 | /*******************************************************************************
Copyright 2006-2012 Lukas Käll <lukas.kall@scilifelab.se>
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at
http:... |
bd8f77840f1b43360d6cee939085e71572541b5056a2ecf36ce317198dbae703 | C++ | 3,319 | 83 | ///-------------------------------------------------------------------------------------------------
///
/// \file CLinkProxy.cpp
/// \copyright Copyright (C) 2022 Inria
///
/// This program is free software: you can redistribute it and/or modify
/// it under the terms of the GNU Affero General Public License as publi... |
eba966604738223f319125d67fe7ab1641f10b1b42f2fb283334cbf185c375a9 | C++ | 3,321 | 137 | /*
Szymon Rusinkiewicz
Princeton University
remove.cc
Removing sets of vertices or faces from TriMeshes.
*/
#include <stdio.h>
#include "TriMesh.h"
#include "TriMesh_algo.h"
// Remove the indicated vertices from the TriMesh.
void remove_vertices(TriMesh *mesh, const std::vector<bool> &toremove)
{
size_t nv = mesh... |
cc3f4da539b85fb5635a7cb931c92a784b6ed83d19c0780489bcef1784f5bd03 | C++ | 3,325 | 122 | #include <hex/helpers/fmt.hpp>
#include <hex/helpers/semantic_version.hpp>
#include <wolv/utils/string.hpp>
namespace hex {
SemanticVersion::SemanticVersion(u32 major, u32 minor, u32 patch) : SemanticVersion(fmt::format("{}.{}.{}", major, minor, patch)) {
}
SemanticVersion::SemanticVersion(const char *v... |
1ab40db5c5d8d10158e963272fb4b57b3a78d2fc06a267a8985b018c86b2ff38 | C++ | 3,335 | 130 | /**
* SPDX-FileCopyrightText: Inria <thomas.prampart@inria.fr>
* SPDX-License-Identifier: AGPL-3.0-only
*/
#include "parameters/parameterStringVector.h"
#include "parameters/parameterFactory.h"
#include <sstream>
namespace OpenViBE {
namespace Parameters {
ParameterStringVector::ParameterStringVector(void) : Para... |
5bdc8a34507a906c476a5a26e49c5fef64b8e3f214ba5de9541b7d277cf65f6d | C++ | 3,352 | 77 | #include "content/views/view_logs.hpp"
#include <hex/api/content_registry/user_interface.hpp>
#include <hex/helpers/logger.hpp>
#include <fonts/vscode_icons.hpp>
namespace hex::plugin::builtin {
ViewLogs::ViewLogs() : View::Floating("hex.builtin.view.logs.name"_unlocalized, ICON_VS_DEBUG_LINE_BY_LINE) {
... |
6951c537b94d5655361ab58d28bea0f672de810698993677a173f1bc56b4987f | C++ | 3,359 | 101 | #include "CBoxAlgorithmNoiseGenerator.hpp"
namespace OpenViBE {
namespace Plugins {
namespace DataGeneration {
CNoiseGenerator::CNoiseGenerator()
{
// Use the OV random seed (if specified) to get dictate the sequence here
std::random_device device;
m_engine = std::default_random_engine(device());
}
bool ... |
8dcf240a4f8637885f39a96133cdbbf2e6a1242989c195a156010c4f3a0fe652 | C++ | 3,367 | 72 | //-----------------------------------------------
// Copyright 2009 Wellcome Trust Sanger Institute
// Written by Jared Simpson (js18@sanger.ac.uk)
// Released under the GPL
//-----------------------------------------------
//
// OverlapCommon - Common wrapper used for finding overlaps
// for a set of reads
//
#include... |
c879119bc7bd00a312cb037e89ee863a5c823503011ccf0d9056d1de1cf1ca8c | C++ | 3,369 | 138 | /*
# =============================================================================
# Copyright (c) 2016 - 2021 Blue Brain Project/EPFL
#
# See top-level LICENSE file for details.
# =============================================================================.
*/
#include <cstdlib>
#include <cstring>
#include "coreneu... |
15f9a4e384aa53e2c5fb40ba28f726428f40a667930a5cd3e4502c8aeded9998 | C++ | 3,371 | 84 | ///-------------------------------------------------------------------------------------------------
///
/// \file CAlgorithmClassifierNULL.cpp
/// \brief Classes implementation for a classification algorithm example.
/// \author Yann Renard (Inria).
/// \version 1.0.
/// \copyright Copyright (C) 2022 Inria
///
/// Th... |
44f23817add229386b64cedd7cbdbe3dd0d17f131afc88f8ae4659bf96af0880 | C++ | 3,371 | 92 | ///-------------------------------------------------------------------------------------------------
///
/// \file CBooleanSettingView.cpp
/// \copyright Copyright (C) 2022 Inria
///
/// This program is free software: you can redistribute it and/or modify
/// it under the terms of the GNU Affero General Public License... |
02746772c6bc55103bcf46d0e705ea92c38fc0f20981588f61f60930d7200192 | C++ | 3,376 | 81 | #include "content/views/view_provider_settings.hpp"
#include <hex/api/imhex_api/hex_editor.hpp>
#include <hex/api/content_registry/user_interface.hpp>
#include <hex/api/task_manager.hpp>
#include <hex/api/events/events_provider.hpp>
#include <hex/providers/provider.hpp>
#include <toasts/toast_notification.hpp>
names... |
30e37fd98d92650a2d1ca480c5c2cc0bded5b93ce12fcf1c50643acadcb8bbcd | C++ | 3,381 | 105 | #include "IReader.h"
#include <expat.h>
#include <string>
#include <iostream>
namespace XML {
class CReader final : public IReader
{
public:
explicit CReader(IReaderCallback& callback);
bool processData(const void* buffer, const size_t size) override;
void release() override;
void openChild(const cha... |
267c3979d0d2705070db4ba3a34a94bc1079de8cfbe49554df260de7b8e160f6 | C++ | 3,386 | 149 |
/********************
PhyloBayes MPI. Copyright 2010-2013 Nicolas Lartillot, Nicolas Rodrigue, Daniel Stubbs, Jacques Richer.
PhyloBayes is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License
as published by the Free Software Foundation, either version 3 of the L... |
9291b835f95300f8b296ff8bc38f10e2367c61ba1f9469cd4f51bb86982bfb8a | C++ | 3,400 | 113 | /*******************************************************************************
"A Collection of Useful C++ Classes for Digital Signal Processing"
By Vinnie Falco
Official project location:
https://github.com/vinniefalco/DSPFilters
See Documentation.cpp for contact information, notes, and bibliography.
----------... |
ace40f3b71c2d773efd5207f62aab4d954dad248c813066802c3e0f342bd4775 | C++ | 3,404 | 54 | #include <hex/api/content_registry/tools.hpp>
#include <hex/api/localization_manager.hpp>
#include <content/tools_entries.hpp>
#include <imgui.h>
#include <fonts/vscode_icons.hpp>
namespace hex::plugin::builtin {
static void drawFileTools() {
if (ImGui::BeginTabBar("file_tools_tabs")) {
if ... |
db95857418c151254f130bb43734c7487869456a5945c561661f3353a96954ff | C++ | 3,408 | 142 | //-----------------------------------------------
// Copyright 2010 Wellcome Trust Sanger Institute
// Written by Jared Simpson (js18@sanger.ac.uk)
// Released under the GPL
//-----------------------------------------------
//
// GapArray - Data structure and functions used to count
// the number of times a suffix of ... |
0aaf21c067050f1284c18da06a6e22a5b000a99c7ebd6c8dad786a6430af1665 | C++ | 3,413 | 142 | /* -*- mode: C++; indent-tabs-mode: nil; -*-
*
* This file is a part of LEMON, a generic C++ optimization library.
*
* Copyright (C) 2003-2013
* Egervary Jeno Kombinatorikus Optimalizalasi Kutatocsoport
* (Egervary Research Group on Combinatorial Optimization, EGRES).
*
* Permission to use, modify and distribut... |
363c50484b0f3beab484da365209243cbbc9266181712a594f9509aa7956fe91 | C++ | 3,420 | 110 | /**
* SPDX-FileCopyrightText: Inria <tristan.cabel@inria.fr>
* SPDX-License-Identifier: AGPL-3.0-only
*/
#include "parameterListIntObject.h"
namespace OpenViBE {
namespace Parameters {
ParameterListIntObject::ParameterListIntObject(std::vector<int> available_values): ParameterObject()
{
m_listInt = new Paramete... |
e1f157bd44596cfd45b793c74b2a039fbfb4a838920e9a1a478a455685d74756 | C++ | 3,420 | 89 | // SPDX-FileCopyrightText: Inria <thomas.prampart@inria.fr>
// SPDX-License-Identifier: AGPL-3.0-only
#include "ScenarioSerializer.h"
#ifdef TARGET_HAS_ThirdPartyOpenViBEPluginsGlobalDefines
#include "ovp_global_defines.h"
#endif // TARGET_HAS_ThirdPartyOpenViBEPluginsGlobalDefines
namespace OpenViBE {
namespace Des... |
51916e3b254f87d506e00a0b32024426f62908149948dfd0fab1f7cf26e915c8 | C++ | 3,436 | 104 | /*
# =============================================================================
# Copyright (c) 2016 - 2021 Blue Brain Project/EPFL
#
# See top-level LICENSE file for details.
# =============================================================================
*/
// use LPT algorithm to balance cells so all warps have s... |
d26c9980221cea5cebee876abe40e3f0a764c22482c39e45e93678cef748e28a | C++ | 3,437 | 84 | #include "ovkCBoxProto.h"
namespace OpenViBE {
namespace Kernel {
bool CBoxProto::addInput(const CString& name, const CIdentifier& typeID, const CIdentifier& id, const bool notify)
{
if (!m_box.addInput(name, typeID, id, notify)) { return false; }
const std::string tmp = std::to_string(m_box.getInputCount())... |
4e6876b308d20f7d99891a2ab540d803180af8b2939092bd9fbd2475f4abe7c9 | C++ | 3,450 | 89 | //FastQTL: Fast and efficient QTL mapper for molecular phenotypes
//Copyright (C) 2015 Olivier DELANEAU, Alfonso BUIL, Emmanouil DERMITZAKIS & Olivier DELANEAU
//
//This program is free software: you can redistribute it and/or modify
//it under the terms of the GNU General Public License as published by
//the Free Soft... |
9c7279d1891a95452ac85f4d31f8dd4e94c303a1bcdcc3a0d72fb66665ceef51 | C++ | 3,468 | 98 | ///-------------------------------------------------------------------------------------------------
///
/// \file CBoxAlgorithmTimeSignalGenerator.cpp
/// \brief Classes implementation for the Box Time signal.
/// \author Yann Renard (Inria).
/// \version 1.1.
/// \copyright Copyright (C) 2022 Inria
///
/// This prog... |
ec8fc72ceb819a37f88c19318779fd42922bea205e2145d0786589a199d6ecef | C++ | 3,487 | 202 |
#include "phylo.h"
int main(int argc, char* argv[]) {
ifstream is(argv[1]);
double cutoff = atof(argv[2]);
string alphabet;
is >> alphabet;
int Nstate = alphabet.size();
cerr << "nstate : " << Nstate << '\n';
double stat[Nstate];
double mat[Nstate][Nstate];
for (int i=0; i<Nstate; i++) {
mat[i][i] = 0;
... |
d96f4d79041e2d0f946c6c886b677c6886af1b847d095c11edb8e6e03b2bc64e | C++ | 3,495 | 169 | /* -*- mode: C++; indent-tabs-mode: nil; -*-
*
* This file is a part of LEMON, a generic C++ optimization library.
*
* Copyright (C) 2003-2013
* Egervary Jeno Kombinatorikus Optimalizalasi Kutatocsoport
* (Egervary Research Group on Combinatorial Optimization, EGRES).
*
* Permission to use, modify and distribut... |
46d28b4234bed8f4dd50b844587d560431a81058707e23761b385272b7fd3f88 | C++ | 3,498 | 142 | /* -*- mode: C++; indent-tabs-mode: nil; -*-
*
* This file is a part of LEMON, a generic C++ optimization library.
*
* Copyright (C) 2003-2013
* Egervary Jeno Kombinatorikus Optimalizalasi Kutatocsoport
* (Egervary Research Group on Combinatorial Optimization, EGRES).
*
* Permission to use, modify and distribut... |
12b6c29c2ac4e5e3f559f43db2e09bf6fc3d6c034b4eb6aedb7d3b6558babca0 | C++ | 3,514 | 77 | //FastQTL: Fast and efficient QTL mapper for molecular phenotypes
//Copyright (C) 2015 Olivier DELANEAU, Alfonso BUIL, Emmanouil DERMITZAKIS & Olivier DELANEAU
//
//This program is free software: you can redistribute it and/or modify
//it under the terms of the GNU General Public License as published by
//the Free Soft... |
231a18d088e1d6f744cf76660498a95de8f9416644198bced3becc8ed741c2cb | C++ | 3,521 | 101 | /*
# =============================================================================
# Copyright (c) 2016 - 2021 Blue Brain Project/EPFL
#
# See top-level LICENSE file for details.
# =============================================================================
*/
#include "report_event.hpp"
#include "coreneuron/sim/mult... |
eb3e789883d9ec16c1715c8b6c197e6df0f84b62d29b54094966c364c0dca62a | C++ | 3,524 | 127 | #include "DBSnpFilter.h"
#include "gzstream.h"
#include "SvabaLogger.h"
#include "BreakPoint.h"
#include "SeqLib/BamHeader.h"
#include "SeqLib/GenomicRegion.h"
using SeqLib::BamHeader;
using SeqLib::AddCommas;
using SeqLib::GenomicRegion;
using SeqLib::GRC;
DBSnpSite::DBSnpSite(const std::string& tchr, const std::s... |
32c331e46486e212328e3d29c9058eb896c90cd5c93e6ca5a4b188c5eb34db6b | C++ | 3,541 | 107 | ///-------------------------------------------------------------------------------------------------
///
/// \file CRendererMultiLine.cpp
/// \copyright Copyright (C) 2022 Inria
///
/// This program is free software: you can redistribute it and/or modify
/// it under the terms of the GNU Affero General Public License ... |
121279a6dd36f3dbc7090a94344555c0cfbbb153db4dd5211feb86070f3db414 | C++ | 3,542 | 119 | /*
# =============================================================================
# Copyright (c) 2016 - 2021 Blue Brain Project/EPFL
#
# See top-level LICENSE file for details.
# =============================================================================
*/
/**
* \file
* \brief Provides interface function for Co... |
b3c816ddf1bc3666060d789200a57b69fdd9d16bcf845c990bb60c88ffaf11f6 | C++ | 3,558 | 100 | ///-------------------------------------------------------------------------------------------------
///
/// \file CVisualizationWidget.cpp
/// \copyright Copyright (C) 2022 Inria
///
/// This program is free software: you can redistribute it and/or modify
/// it under the terms of the GNU Affero General Public Licens... |
5c4a6f48d271563155fc68647f1941c5b3952f1d07310a814376a0121d0e4261 | C++ | 3,564 | 122 | ///-----------------------------------------------
// Copyright 2010 Wellcome Trust Sanger Institute
// Written by Jared Simpson (js18@sanger.ac.uk)
// Released under the GPL
//-----------------------------------------------
//
// StatsProcess - Compute statistics about the reads
//
#include "StatsProcess.h"
#include "... |
358f111213c2b3021a92e81ba79d8b2ce3751c25eb686d32f32f4d1c5dec330a | C++ | 3,576 | 124 | /**
* SPDX-FileCopyrightText: Inria <tristan.cabel@inria.fr>
* SPDX-License-Identifier: AGPL-3.0-only
*/
#include "parameterDoubleObject.h"
namespace OpenViBE {
namespace Parameters {
ParameterDoubleObject::ParameterDoubleObject(const std::string& name, const std::string& description, double value) : ParameterObjec... |
10ca6bfddc27a694237feff2dde5bf59b4a744f754d6b54ad59a31beb738b981 | C++ | 3,577 | 109 | #if defined(OS_WEB)
#include <emscripten.h>
#include <emscripten/html5.h>
#include <GLFW/glfw3.h>
#include <hex/api/events/requests_lifecycle.hpp>
#include <hex/api/task_manager.hpp>
#include <window.hpp>
#include <init/run.hpp>
namespace hex::init {
void saveFsData() {
... |
db4fbdd3d6d3f9a9e87ec5e5fe1eca9d04266bb6baefb27f779e68573969b849 | C++ | 3,589 | 81 | //FastQTL: Fast and efficient QTL mapper for molecular phenotypes
//Copyright (C) 2015 Olivier DELANEAU, Alfonso BUIL, Emmanouil DERMITZAKIS & Olivier DELANEAU
//
//This program is free software: you can redistribute it and/or modify
//it under the terms of the GNU General Public License as published by
//the Free Soft... |
8f3fbed64f662cd9bb9dfb1ea1797a71297281017b37daab363a19328b3d8cbc | C++ | 3,597 | 175 | //-----------------------------------------------
// Copyright 2009 Wellcome Trust Sanger Institute
// Written by Jared Simpson (js18@sanger.ac.uk)
// Released under the GPL
//-----------------------------------------------
//
// ReadTable - A 0-indexed table of reads
//
#include <iostream>
#include <algorithm>
#includ... |
4863e9e95531544ad15620d731ab263b8887fad6d81360440296ef7c2fe92f31 | C++ | 3,598 | 98 | #include <hex/test/tests.hpp>
#include <hex/helpers/utils.hpp>
#include <vector>
using namespace std::literals::string_literals;
namespace {
std::vector<u8> bytesOf(std::string_view text) {
return { text.begin(), text.end() };
}
}
TEST_SEQUENCE("ExtractBits") {
TEST_ASSERT(hex::extract(11, 4,... |
9fc4e3186420acd38cdf68e5e4fbc4f97510990e920614a77c4420ae046ae297 | C++ | 3,606 | 91 | ///-------------------------------------------------------------------------------------------------
///
/// \file CColorSettingView.cpp
/// \copyright Copyright (C) 2022 Inria
///
/// This program is free software: you can redistribute it and/or modify
/// it under the terms of the GNU Affero General Public License a... |
bf1394464f961d20a3bac8ffe345290ed5628498e8342eea60192f81da9d6726 | C++ | 3,608 | 116 | // SPDX-FileCopyrightText: Inria <thomas.prampart@inria.fr>
// SPDX-License-Identifier: AGPL-3.0-only
#include "CTraceBuffer.h"
#include <algorithm>
#include <cmath>
namespace OpenViBE {
namespace Plugins {
namespace SimpleVisualization {
namespace {
/** Never let a pathological header allocate an unbounded ring (2... |
8e623710ab68b07d8be07c859a6354516aadf3b800d0808330400cd00efb0af9 | C++ | 3,610 | 83 | #include "content/views/view_tutorials.hpp"
#include <hex/api/content_registry/user_interface.hpp>
#include <hex/api/tutorial_manager.hpp>
#include <hex/api/task_manager.hpp>
#include <hex/api/events/requests_gui.hpp>
#include <fonts/vscode_icons.hpp>
#include <ranges>
namespace hex::plugin::builtin {
ViewTuto... |
463d32638a8fd6afdc68b5fe2c47e6aa15b252a8e8b48554490c6a53cbac96da | C++ | 3,633 | 95 | #include <hex/helpers/utils.hpp>
#include <hex/helpers/fmt.hpp>
#include <hex/api/localization_manager.hpp>
#include <hex/ui/imgui_imhex_extensions.h>
#include <charconv>
namespace hex::plugin::builtin {
static u32 digitsNeeded(u32 numDigits, u32 baseX, u32 baseY) {
if (numDigits == 0)
retur... |
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