sha256 stringlengths 64 64 | language stringclasses 28
values | size int32 1 491k | lines int32 1 23.2k | content stringlengths 1 200k |
|---|---|---|---|---|
e7fe8638e8a58a6a73de63e3b164bea8d82ec8d83d5662a84791109d0aab8365 | C/C++ | 1,031 | 41 | //-----------------------------------------------
// Copyright 2010 Wellcome Trust Sanger Institute
// Written by Jared Simpson (js18@sanger.ac.uk)
// Released under the GPL
//-----------------------------------------------
//
// BWTReaderAsciiAscii.h - Read a plain-text BWT file from disk
//
#ifndef BWTREADERASCII_H
... |
cfc10ae893dc07a8982fd184928289eb2bf3ce7b1d30816c215d44638a44d891 | C/C++ | 1,036 | 35 | /*
# =============================================================================
# Copyright (c) 2016 - 2021 Blue Brain Project/EPFL
#
# See top-level LICENSE file for details.
# =============================================================================.
*/
/**
* @file memory_utils.h
* @date 25th Oct 2014
* @b... |
9034458665288f627896f2682369d0cc09dbeb68e1fb725bbc3d0db25ba71850 | C/C++ | 1,041 | 47 | #pragma once
#include <string>
#include <fstream>
struct SStimulation
{
std::string name;
std::string id;
std::string hexa;
};
class CFileGeneratorBase
{
public:
virtual ~CFileGeneratorBase() = default;
virtual bool openFile(const char* filename) = 0;
virtual bool appendStimulation(SStimulati... |
974be89e9e139e96da24fa6c30261cf13eb0154871a7367a8745b37876ee6f2b | C/C++ | 1,043 | 32 | #pragma once
#include <boost/asio.hpp>
#include "IStimulusSender.h"
namespace TCPTagging {
/*
* \class CStimulusSender
* \author Jussi T. Lindgren / Inria
* \brief Simple client to send stimuli to Acquisition Server's TCP Tagging
*/
class CStimulusSender : public IStimulusSender
{
public:
CStimulusSender() : m_o... |
8b4476472392efdad6da2c5ecc5401ebcd714f5a450477a556a6db96daba1e17 | C/C++ | 1,044 | 32 | #pragma once
#include "CodecImpl.h"
#include "TypeChannelLocalization.h"
#include "TypeChannelUnits.h"
#include "TypeExperimentInfo.h"
#include "TypeFeatureVector.h"
#include "TypeMatrix.h"
#include "TypeSignal.h"
#include "TypeSpectrum.h"
#include "TypeStimulation.h"
namespace OpenViBE {
namespace Tracker {
CODEC_I... |
24d21ba658070e2191915013d604996e28d797df856c43494065d7dbb0a8ea33 | C/C++ | 1,046 | 37 | //
// OpenViBE Tracker
//
#pragma once
#include "StreamRendererLabel.h"
#include "TypeExperimentInfo.h"
namespace OpenViBE {
namespace Tracker {
/**
* \class StreamRendererExperimentInfo
* \brief Renderer for Experiment Information streams
* \author J. T. Lindgren
*
* @ fixme this class inherits a lot of junk... |
b437009ab5a9909645eb5ae5536411076bee9f2953250bd0187f8b335a6dfa96 | C/C++ | 1,047 | 37 | // ***************************************************************************
// bamtools_filter.h (c) 2010 Derek Barnett, Erik Garrison
// Marth Lab, Department of Biology, Boston College
// ---------------------------------------------------------------------------
// Last modified: 28 August 2010
// ---------------... |
8c8450ce9bbff7a8ab5008578d44a0c7fa102e588be0ea1e74ddd0b9a5789124 | C/C++ | 1,052 | 35 | //-----------------------------------------------
// Copyright 2009-2013 Wellcome Trust Sanger Institute
// Written by Jared Simpson (js18@sanger.ac.uk)
// Released under the GPL
//-----------------------------------------------
//
// SGAStats - Common statistics functions used
// throughout the program
//
#ifndef SG... |
b094f8e38a13d59ae375b565d97bb61266012848c0c70797a0f4e962a3ed7752 | C/C++ | 1,052 | 35 | //-----------------------------------------------
// Copyright 2009 Wellcome Trust Sanger Institute
// Written by Jared Simpson (js18@sanger.ac.uk)
// Released under the GPL
//-----------------------------------------------
//
// OverlapCommon - Common functions used in overlap methods
//
#ifndef OVERLAPCOMMON_H
#defin... |
94d0d64c0277408e46d75324dd1715e3418da3b9ea868c5139860245bee08117 | C/C++ | 1,053 | 22 | p4_node *p4_newNode(int nodeNum, p4_tree *aTree, int seqNum, int isLeaf, int inTree);
void p4_freeNode(p4_node *aNode);
void p4_calculateBigPDecks(p4_node *aNode);
void p4_calculateBigPDecksPart(p4_node *aNode, int pNum);
void p4_calculateBigPDecks_1stD(p4_node *aNode);
void p4_calculateBigPDecks_2ndD(p4_node *aNode);
... |
c4a5649aa043b9be8822ca246e7845524ff24522d77d78348b6237c85a1cc41a | C/C++ | 1,053 | 41 | #pragma once
#if defined TARGET_HAS_ThirdPartyGUSBampCAPI
#include "../ovasCConfigurationBuilder.h"
#include <gtk/gtk.h>
namespace OpenViBE {
namespace AcquisitionServer {
class CConfigurationGTecGUSBampLegacy final : public CConfigurationBuilder
{
public:
CConfigurationGTecGUSBampLegacy(const char* gtkBuilderF... |
20634edec3585a5daa85c923e9b2efaa8282684724351d25095f84f9334ceb47 | C/C++ | 1,056 | 49 | // Written by Oliver Serang 2009
// see license for more information
#ifndef _Numerical_H
#define _Numerical_H
#include <iostream>
#include <cmath>
#include <limits>
using namespace std;
const double Pi = 3.14159;
class Numerical {
public:
Numerical() { epsilon = 1e-9; }
Numerical(double eps) : epsilon(eps) {... |
702dcec21d684ed3a418f08fae2113b02fff36aa1dc876954c43933b1c112cfd | C/C++ | 1,059 | 34 | #pragma once
#include "../../ovasCConfigurationBuilder.h"
#include "ovasIDriver.h"
namespace OpenViBE {
namespace AcquisitionServer {
/**
* \class CConfigurationMKSNVXDriver
* \author mkochetkov (MKS)
* \date Tue Jan 21 23:21:03 2014
* \brief The CConfigurationMKSNVXDriver handles the configuration dialog specifi... |
d542afba16bec04d523d132d92d4138435ed38471a1aac56a5bd273499946c10 | C/C++ | 1,064 | 36 | #pragma once
#include <QObject>
#include <QString>
namespace OpenViBE {
namespace PluginInspector {
/**
* @brief One input or output port handed to Box.qml when rendering a snapshot.
*
* Box.qml's port delegates declare `required property string name` / `dataType`,
* which only resolve against QObject properties... |
9d4e304d6da00a580efedcbdd4c744e681437680088aeb16622ef3ee0fa2af59 | C/C++ | 1,065 | 39 | /**
* SPDX-FileCopyrightText: Inria <tristan.cabel@inria.fr>
* SPDX-License-Identifier: AGPL-3.0-only
*/
#pragma once
#include "../ov_defines.h"
#include "parameterTraits.h"
namespace OpenViBE {
namespace Parameters {
class OV_API ParameterColor : public ParameterBase<std::string, ParameterColor>
{
public:
Par... |
068d31be3b1923b5d4b90a33499c6c386134412a10730b86cb567fbb3e71c1dc | C/C++ | 1,067 | 26 | #ifndef RWRAPPER_H
#define RWRAPPER_H
#include "utils.h"
#include "cs.h"
double get_control_value(SEXP sControlList, const char * param_name);
cs * dgTMatrix_to_cs (SEXP input);
SEXP thin_R (SEXP sX, SEXP sY, SEXP sW, SEXP sN, SEXP sK, SEXP sControl);
SEXP tf_R (SEXP sX, SEXP sY, SEXP sW, SEXP sN, SEXP sK, SEXP sFam... |
7250cd32668db074c2b5243bd252d926ee866062c67d6cd1cc86d5ea4dbcc44a | C/C++ | 1,068 | 28 | #pragma once
#include "ovp_global_defines.h"
//___________________________________________________________________//
// //
// Basic includes //
//_______________________________________________________... |
80b25f4af98d165e3fa56b6469d647cf4cb099618ec745f2ad662e00819766c2 | C/C++ | 1,070 | 44 | #pragma once
#if defined TARGET_HAS_ThirdPartyEmotivAPI
#include "../ovasCConfigurationBuilder.h"
#include "ovasIDriver.h"
#include "../ovasCHeader.h"
#include <gtk/gtk.h>
#if defined TARGET_OS_Windows
#include <windows.h>
#endif
namespace OpenViBE {
namespace AcquisitionServer {
/**
* \class CConfigurationEmotiv... |
f6c4cab8e155a860709ccaf5dc98ff264c6b5f265070510f11973b9440dce1d7 | C/C++ | 1,072 | 37 |
/********************
PhyloBayes MPI. Copyright 2010-2013 Nicolas Lartillot, Nicolas Rodrigue, Daniel Stubbs, Jacques Richer.
PhyloBayes is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License
as published by the Free Software Foundation, either version 3 of the L... |
ed2c57a843e0dc7d8627c0cf7bc86913ff9a371814919f8b461cd14e08f3c902 | C/C++ | 1,075 | 38 | //
// OpenViBE Tracker
//
#pragma once
#include "StreamRendererLabel.h"
#include "TypeChannelLocalization.h"
namespace OpenViBE {
namespace Tracker {
/**
* \class StreamRendererChannelLocalization
* \brief Renderer for Channel Localization streams
* \author J. T. Lindgren
*
* @ fixme this class inherits a lo... |
36a64e899a2c2fed937c19548779d40b2425a0fde9046b40514bad52c2d31ce5 | C/C++ | 1,076 | 43 | #ifndef READ2CONTIG_H
#define READ2CONTIG_H
#include <string>
#include <vector>
#include "api/BamReader.h"
#include "api/BamWriter.h"
#include <sstream>
struct Read2Contig {
// Constructors
Read2Contig(std::string tcname, std::string trname, unsigned tpos, std::string tseq) : cname(tcname), rname(trname), pos(tp... |
638d3aca82408890a8a3c1be9fde3feb279cec98607a8a09043e63b438fd19c3 | C/C++ | 1,078 | 28 | #pragma once
#include "../ovkTKernelObject.h"
namespace OpenViBE {
namespace Kernel {
class CAlgorithmProxy;
class CAlgorithmProto final : public TKernelObject<IAlgorithmProto>
{
public:
CAlgorithmProto(const IKernelContext& ctx, CAlgorithmProxy& rAlgorithmProxy);
bool addInputParameter(const CIdentifier& i... |
65fbceb5cc038595c48b6ef72ec9538a80fb2e2b4cbaf1168b0f705ca9fa94da | C/C++ | 1,078 | 32 | #pragma once
#include "windows.h"
#include "ov_defines.h"
#include "ovCString.h"
//___________________________________________________________________//
// //
// Get Cpu Time //
//___________________... |
f5953e044e5cb1d00ee5db585db4655181c27141a79fcddda20fb3fa6e5e51c0 | C/C++ | 1,078 | 38 | // ***************************************************************************
// bamtools_split.h (c) 2010 Derek Barnett, Erik Garrison
// Marth Lab, Department of Biology, Boston College
// ---------------------------------------------------------------------------
// Last modified: 7 April 2011 (DB)
// -------------... |
f1421d10d64cd61cb1c99e7cf416f0854a64ef7f71ee912be09ab0fc066a3ceb | C/C++ | 1,081 | 28 | // Not GPL'd
pcomplex Complex(double a, double b);
pcomplex Cadd(pcomplex a, pcomplex b);
pcomplex Csub(pcomplex a, pcomplex b);
pcomplex Cmul(pcomplex a, pcomplex b);
pcomplex Conj(pcomplex a);
// Note that DLS has a CDiv function in linalg.
// (With the slightly different spelling.)
pcomplex Cdiv(pcomplex a, pcomp... |
0ebf904b046c2f11aded1d3bbf1319a5ba8ece38af9fd7dfa6c27b786d6bb0c4 | C/C++ | 1,083 | 34 | /*******************************************************************************
Copyright 2006-2012 Lukas Käll <lukas.kall@scilifelab.se>
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at
http:... |
6b04e5b41a537a5be653d0c12daa1e57e21a3726a42284a561299412425dd103 | C/C++ | 1,083 | 60 | #ifndef __SNPTAB_H__
#define __SNPTAB_H__
#include <hdf5.h>
#include "snp.h"
#define SNPTAB_N_FIELDS 4
/* chunk size affects performance a lot
* small chunks = much faster writing of tables, but
* worse compression
*/
#define SNPTAB_CHUNK_SIZE 12
/* SNPTab holds information about SNP table
* and datatypes... |
2ffc4a17184582a4a447a193f34fb7a8f7e83eb9e457b6e8a67689b26e424587 | C/C++ | 1,090 | 30 | /*
# =============================================================================
# Copyright (c) 2016 - 2021 Blue Brain Project/EPFL
#
# See top-level LICENSE file for details.
# =============================================================================
*/
/**
* @file string_utils.h
* @brief Utility functions f... |
c1d153ca10297d075fde5901e4e3a91b7b82d409167b94c3e6bbb919727fea9d | C/C++ | 1,090 | 46 | #ifndef __SEQ_H__
#define __SEQ_H__
#include <stdio.h>
#include <zlib.h>
#define SEQ_MAX_NAME_SZ 127
#define SEQ_NAME_BUF_SZ 128
#define SEQ_DEFAULT_BUF_SZ 65535
#define SEQ_FASTA_LINE_LEN 70
/*
* A DNA, RNA, or amino acid sequence
*/
typedef struct {
char name[SEQ_NAME_BUF_SZ]; /* name of the sequence ... |
892b562e726181a0218cec0327f7085b04f7ce15fb46106b987f718d08812a70 | C/C++ | 1,092 | 35 | // SPDX-FileCopyrightText: Inria <thomas.prampart@inria.fr>
// SPDX-License-Identifier: AGPL-3.0-only
#pragma once
#include <openvibe/ov_all.h>
#include <QByteArray>
namespace OpenViBE {
namespace Designer {
/**
* @brief In-memory XML round-trip of a kernel scenario.
*
* Drives the kernel's XML scenario importer... |
568570c3e030d3429c48b6309fe7fb8dad8aa9ec41c8b4abdddf2cd78761e1dd | C/C++ | 1,096 | 50 | /*
* HID driver for OpenViBE
*
* \authors (NeuroServo, NeuroTechX)
* \developer (Innocent Aguie)
* \date Wed Nov 23 00:24:00 2016
*
*/
#pragma once
#if defined TARGET_OS_Windows
#if defined TARGET_HAS_ThirdPartyNeuroServo
#include <Windows.h>
#include <functional>
class HidDeviceNotifier
{
public:
HidDeviceNotif... |
d598afff3b0afb8b74c911ca127326a89c4baef234e8c7ddd34982f69eaf709a | C/C++ | 1,097 | 36 | #pragma once
#include "../ovtk_base.h"
namespace OpenViBE {
namespace Toolkit {
namespace String {
class OVTK_API ISplitCallback
{
public:
virtual ~ISplitCallback() { }
virtual void beginSplit() const { }
virtual void endSplit() const { }
virtual void setToken(const char* token) const = 0;
};
templat... |
e36db2348c07f69e3b0d3f0c78f4583fc7aa5d77ae73f0cceab927b73ab7f73d | C/C++ | 1,100 | 56 | //-----------------------------------------------
// Copyright 2010 Wellcome Trust Sanger Institute
// Written by Jared Simpson (js18@sanger.ac.uk)
// Released under the GPL
//-----------------------------------------------
//
// BWTReader - Abstract class for reading a BWT file
//
#ifndef BWTREADER_H
#define BWTREADE... |
c88cdb6de8490896cd1aa14118b3c0b95d3cef68ac695f1eae06259616c37d1a | C/C++ | 1,101 | 38 | //-----------------------------------------------
// Copyright 2012 Wellcome Trust Sanger Institute
// Written by Jared Simpson (js18@sanger.ac.uk)
// Released under the GPL
//-----------------------------------------------
//
// BWTIndexSet.h - Struct holding the different
// types of index for a set of sequences. Use... |
c527d50c0156fda0f12fc7dddff96dcad7eb8d6552291aa7450a0dba844a57cf | C/C++ | 1,104 | 57 | #ifndef __VCF_H__
#define __VCF_H__
#include <zlib.h>
#include "snp.h"
#define VCF_MAX_QUAL 1024
#define VCF_MAX_FILTER 1024
#define VCF_MAX_FORMAT 1024
typedef struct {
int n_sample;
long n_header_line;
/* records true length of ref / alt alleles, which can be
* truncated by limited buffer size of SNP d... |
ce12a36422a1165c7efa18773db441a5880b1baec3d01370e6b14519d26a7b75 | C/C++ | 1,111 | 38 | /*******************************************************************************
Copyright 2006-2012 Lukas Käll <lukas.kall@scilifelab.se>
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at
http://www... |
0d6ad6578663fddb49c5c4808e576611c1419c440b1e85e732cb547470351572 | C/C++ | 1,117 | 44 | //-----------------------------------------------
// Copyright 2010 Wellcome Trust Sanger Institute
// Written by Jared Simpson (js18@sanger.ac.uk)
// Released under the GPL
//-----------------------------------------------
//
// BWTWriterBinary - Read a run length encoded binary BWT file from disk
//
#ifndef BWTREADE... |
c215a8fb725bff3e0ff578ac2b849d1530968158baae6098cafb79e34f1aebb9 | C/C++ | 1,117 | 13 | #include <Python.h>
#include <numpy/arrayobject.h>
p4_model *p4_newModel(int nParts, int doRelRates, int relRatesAreFree, int nFreePrams, int isHet, int *rMatrixNormalizeTo1, double *PINVAR_MIN, double *PINVAR_MAX, double *KAPPA_MIN, double *KAPPA_MAX, double *GAMMA_SHAPE_MIN, double *GAMMA_SHAPE_MAX, double *PIVEC_MI... |
4cd0ff49187646a9a49f595cbd536617712b63efb04923d27a768a616cd80052 | C/C++ | 1,119 | 44 | /* -*- mode: C++; indent-tabs-mode: nil; -*-
*
* This file is a part of LEMON, a generic C++ optimization library.
*
* Copyright (C) 2003-2013
* Egervary Jeno Kombinatorikus Optimalizalasi Kutatocsoport
* (Egervary Research Group on Combinatorial Optimization, EGRES).
*
* Permission to use, modify and distribut... |
5a6d680d474c05308340b73f388b05767477a70bb87b48e18bf5445d4dd82bda | C/C++ | 1,119 | 49 | //-----------------------------------------------
// Copyright 2012 Wellcome Trust Sanger Institute
// Written by Jared Simpson (js18@sanger.ac.uk)
// Released under the GPL license
//-----------------------------------------------
//
// QualityTable - A 0-indexed table of quality scores
//
#ifndef QUALITYTABLE_H
#defi... |
3f93e6689dc595cddbdb8ce22045802191416517547c79de2297614a70ac5843 | C/C++ | 1,126 | 46 | #pragma once
#include "ovasIDriver.h"
namespace OpenViBE {
namespace AcquisitionServer {
/**
* \class CDriverGenericOscillator
* \author Yann Renard (INRIA)
*/
class CDriverGenericOscillator final : public IDriver
{
public:
explicit CDriverGenericOscillator(IDriverContext& ctx);
void release();
const ... |
3c2878b8014b9dfe4c777dc60a4a8fa4eaa431649e86d1aed2a4c3b830d1d5ca | C/C++ | 1,136 | 34 | #pragma once
#include "TConnectionDelegate.h"
#include "IConnectionSerial.h"
namespace Socket {
struct Socket_API SConnectionSerialDelegate
{
SConnectionDelegate connectionDelegate;
bool (*fpConnect)(void*, const char*, const size_t);
size_t (*fpGetPendingByteCount)(void*);
bool (*fpFlush)(void*);
... |
81cb930f63095143d9acbef16ba355c242bc68a4d2b00ba248afcfb471ee8e18 | C/C++ | 1,137 | 36 | //-----------------------------------------------
// Copyright 2010 Wellcome Trust Sanger Institute
// Written by Jared Simpson (js18@sanger.ac.uk)
// Released under the GPL
//-----------------------------------------------
//
// CorrectionThresholds.h - Singeleton class containing
// cutoff values for determining whet... |
838a01fadaf1a0e4c115f58d70bcef8c6d3f9499be8b15615dd2a8ccb8312190 | C/C++ | 1,148 | 34 | /*******************************************************************************
Copyright 2006-2012 Lukas Käll <lukas.kall@scilifelab.se>
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at
http:... |
99d9b05d58ab6bcd0ff9aa635b635e05a44e4b2e44b23337705074015fd058a7 | C/C++ | 1,149 | 33 | //-----------------------------------------------
// Copyright 2009 Wellcome Trust Sanger Institute
// Written by Jared Simpson (js18@sanger.ac.uk)
// Released under the GPL license
//-----------------------------------------------
//
// SGUtils - Data structures/Functions related
// to building and manipulating string... |
6e1436ad6bc0c87dd3c5e7e8adfaf374c867e02cd8e3ec7447b54e78090cd033 | C/C++ | 1,150 | 29 | #pragma once
#include "defines.h"
#if defined TARGET_OS_Windows
#include <windows.h>
#include <string>
namespace System {
class System_API WindowsUtilities
{
public:
static void* utf16CompliantLoadLibrary(const char* path, HANDLE file = nullptr, DWORD flags = LOAD_LIBRARY_SEARCH_USER_DIRS | LOAD_LIBRARY_SEARCH_DE... |
69fe43b6bbe466d70d75d1cb7cd5122dd135c99c5fac30954e29447987c40927 | C/C++ | 1,154 | 46 | #ifndef KDTREE_H
#define KDTREE_H
/*
Szymon Rusinkiewicz
Princeton University
KDtree.h
A K-D tree for points, with limited capabilities (find nearest point to
a given point, or to a ray).
*/
#include <vector>
class KDtree {
private:
class Node;
Node *root;
void build(const float *ptlist, int n);
public:
// Co... |
acb1b5f66b313dd219ec1233e432498c8b2575d810e21461323a22c9b99e94fc | C/C++ | 1,154 | 35 | #pragma once
#include <vector>
#include "Chunk.h"
namespace OpenViBE {
namespace Tracker {
/**
* \class EncodedChunk
* \brief Data class for encoded chunks
* \details
* Stream content in OpenViBE is carried as encoded chunks. Although this inherits from Chunk,
* this type is a bit special since its not expli... |
68fe046be8d5c86cc8ac2a69b8dc70e5a5eaf6d32bb2170c16122b174b846605 | C/C++ | 1,157 | 32 | /*******************************************************************************
Copyright 2006-2012 Lukas Käll <lukas.kall@scilifelab.se>
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at
http:... |
303360b718f5dc6676d1580154987e44039c7bb68dd1a3396e41aac43e06253f | C/C++ | 1,161 | 43 | // SPDX-FileCopyrightText: Inria <thomas.prampart@inria.fr>
// SPDX-License-Identifier: AGPL-3.0-only
#pragma once
#include <QObject>
#include <QString>
#include <qqml.h>
namespace OpenViBE {
namespace DesignSystem {
class FontManager : public QObject
{
Q_OBJECT
QML_ELEMENT
QML_SINGLETON
Q_PROPE... |
33a13054d241a8bdc1c05d8fc9d38d5daedc72b10d81fd9243d038afda0468a5 | C/C++ | 1,161 | 34 | #pragma once
#include "../ovkTKernelObject.h"
#include <map>
#include <mutex>
namespace OpenViBE {
namespace Kernel {
class CAlgorithmProxy;
class CAlgorithmManager final : public TKernelObject<IAlgorithmManager>
{
public:
explicit CAlgorithmManager(const IKernelContext& ctx) : TKernelObject<IAlgorithmManager>... |
6bcf6bfcd9de715b756f2ef2bccfde240f64da0787d3d54d2ba42972996782e5 | C/C++ | 1,163 | 41 | #pragma once
#include "IConnection.h"
#include <string>
#if defined TARGET_OS_Windows
#include <windows.h>
#endif
namespace Socket {
/**
* \brief The IConnectionParallel class provides the possibility to communicate with a parallel port.
* On Windows, you must have TVicPort library installed (available for free: h... |
e88f86cda75b9eda94db6c21ed290a94324320e97ba7607687120b36bf74a831 | C/C++ | 1,166 | 44 | //-----------------------------------------------
// Copyright 2010 Wellcome Trust Sanger Institute
// Written by Jared Simpson (js18@sanger.ac.uk)
// Released under the GPL
//-----------------------------------------------
//
// BWTWriterAsciiAscii - Write a BWT to a plain text file
//
#ifndef BWTWRITERASCII_H
#defin... |
32124d52f7f723c9e5a44ca820d57922c4f39563a1f8a3153c5eae0571ddf1e8 | C/C++ | 1,167 | 46 | #pragma once
/**
* SPDX-FileCopyrightText: Inria <florent.leray@inria.fr>
* SPDX-License-Identifier: AGPL-3.0-only
*/
/**
* @file DummyDriver.h
* @brief Header file for DummyDriver class.
*
* Declares the DummyDriver class, a stub implementation of AbstractDriver for testing.
*/
#include "AbstractDriver.h"
#i... |
776d76cfae870315fd6cc4f468b4640b9fe05eb5bccbf1f6bdb84537f92fc70a | C/C++ | 1,176 | 35 |
/********************
PhyloBayes MPI. Copyright 2010-2013 Nicolas Lartillot, Nicolas Rodrigue, Daniel Stubbs, Jacques Richer.
PhyloBayes is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License
as published by the Free Software Foundation, either version 3 of the L... |
ec86ebaa59eb1e54865b7b6d421f6abeae801f9241802a21662a12d233d7f5de | C/C++ | 1,176 | 46 | #pragma once
#include "ovasIDriver.h"
#include "../ovasCHeader.h"
#include "../ovasCSettingsHelper.h"
namespace OpenViBE {
namespace AcquisitionServer {
/**
* \class CDriverGenericTimeSignal
* \author Jussi Lindgren (Inria)
*
* This driver may have some utility in debugging. For each sample, it returns the
* ... |
a3dfa5e2c0d85e83e961d1f3504ec1e24bb27c74277789c359273b567ae10f30 | C/C++ | 1,184 | 50 | #pragma once
/**
* @file OSAL.h
* @brief Operating System Abstraction Layer for dynamic library loading.
* @details Cross-platform interface for dlopen/dlsym/dlclose (Unix) and
* LoadLibraryExW/GetProcAddress/FreeLibrary (Windows).
*
* SPDX-FileCopyrightText: Inria <florent.leray@inria.fr>
* SPDX-Licen... |
d5cd6609d9a626b712a86e43c0717f3ab2f44e8ba5006f4ee0a168fd9b039560 | C/C++ | 1,188 | 53 | #pragma once
#include <openvibe/ov_all.h>
#include "Chunk.h"
namespace OpenViBE {
namespace Tracker {
/**
* \class TypeMatrix
* \brief Abstact class defining chunk types for Matrix streams
* \author J. T. Lindgren
*
*/
class TypeMatrix
{
public:
static CIdentifier getTypeIdentifier() { return OV_TypeId_Str... |
60e78569a506dede79f892c86be9714bbd81243ab58abcffd84828166499bd8d | C/C++ | 1,189 | 46 | /**
* SPDX-FileCopyrightText: Inria <tristan.cabel@inria.fr>
* SPDX-License-Identifier: AGPL-3.0-only
*/
#pragma once
#include <QtCore>
class ImpedanceItem : public QObject
{
Q_OBJECT
Q_PROPERTY(QString name READ name NOTIFY nameChanged)
Q_PROPERTY(double value READ value NOTIFY valueChanged)
Q_PROP... |
7b6e1e6d208b3cade3bb5936b335f3e18862b69730d3bdbfae39009ecff289f7 | C/C++ | 1,190 | 35 | #pragma once
#include "../ovkTKernelObject.h"
#include "ovkCPlayerContext.h"
namespace OpenViBE {
namespace Kernel {
class CSimulatedBox;
class CBoxAlgorithmCtx final : public TKernelObject<IBoxAlgorithmContext>
{
public:
CBoxAlgorithmCtx(const IKernelContext& ctx, CSimulatedBox* simulatedBox, const IBox* box);... |
904efad9fa39dbfd54258888d7440875e37f86c149a38875c08af0d019e2f189 | C/C++ | 1,194 | 40 |
/********************
PhyloBayes MPI. Copyright 2010-2013 Nicolas Lartillot, Nicolas Rodrigue, Daniel Stubbs, Jacques Richer.
PhyloBayes is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License
as published by the Free Software Foundation, either version 3 of the L... |
0467900398fdd349b019ea8ef495fd30aac37e615206f74e3d34fb8631382c1f | C/C++ | 1,197 | 38 | /**
* SPDX-FileCopyrightText: Inria <tristan.cabel@inria.fr>
* SPDX-FileCopyrightText: Inria <thomas.prampart@inria.fr>
* SPDX-License-Identifier: AGPL-3.0-only
*/
#pragma once
#include <openvibe/ov_all.h>
#include <QMetaMethod>
#include <QObject>
#include <parametersObject.h>
namespace OpenViBE {
namespace Des... |
bd540964d395e2b12ff2b8e6a2bf0fb3a9a2999411f11aab8599a39b519a2aca | C/C++ | 1,198 | 31 | #ifndef WELCH_H
#define WELCH_H
#include <iostream>
#include <math.h>
#pragma GCC diagnostic push
#pragma GCC diagnostic ignored "-Wredundant-decls"
#include <mkl.h>
#pragma GCC diagnostic pop
#ifndef M_PI
#define M_PI 3.14159265358979323846
#endif
// MKL API Wrappers To Allow For Templating
template <typename T> i... |
5af3c0fac271393fd131b4fdbdc83fc9a074fe24b7badf60884aa40f8ee0c15e | C/C++ | 1,205 | 51 | #pragma once
#include <openvibe/ov_all.h>
#include "Chunk.h"
namespace OpenViBE {
namespace Tracker {
/**
* \class TypeExperimentInfo
* \brief Abstact class defining chunk types for Experiment Information streams
* \author J. T. Lindgren
*
*/
class TypeExperimentInfo
{
public:
static CIdentifier getTypeIde... |
d109bddd4859f6e11bb5d93e72bd8c022d7e5909b86705d12b35923535f86ed3 | C/C++ | 1,208 | 40 | #pragma once
#include <openvibe/ov_all.h>
#include "ITrackerPlugin.h"
#include "Contexted.h"
namespace OpenViBE {
namespace Tracker {
/**
* \class TrackerPlugins
* \author J. T. Lindgren
* \brief Container class for currently registered Tracker plugins. These plugins get direct access to StreamBundles (i.e. ful... |
bfd073ec00954742c42b662e62f3e1d935f06de52d465927f435fd77d3cf0422 | C/C++ | 1,209 | 39 | #pragma once
#include <openvibe/kernel/scenario/ovIMetadata.h>
#include "../ovkTKernelObject.h"
namespace OpenViBE {
namespace Kernel {
class CScenario;
class CMetadata final : public TKernelObject<IMetadata>
{
public:
CMetadata(const IKernelContext& ctx, CScenario& ownerScenario) : TKernelObject<IMetadata>(ctx... |
595511257503b304bd90acb7a9c2a4f62115c4fc46218603faa1f1deaaaa6782 | C/C++ | 1,210 | 45 | #pragma once
#include <fstream>
#include <iostream>
#include <mutex>
#include <sstream>
#include <string>
class SvabaOptions;
/// A simple thread safe logger that writes to a file and (optionally) stderr.
class SvabaLogger {
public:
SvabaLogger() = default;
~SvabaLogger();
/// Must be called once at program st... |
84afdeeed4ddd15a92a9527a5917db0e2e3b4c6ff4ec40e82cd6b1c8501a0520 | C/C++ | 1,212 | 43 | #pragma once
#include "../ovasCConfigurationBuilder.h"
#include "ovasIDriver.h"
namespace OpenViBE {
namespace AcquisitionServer {
/**
* \class CConfigurationCognionics
* \author Mike Chi (Cognionics, Inc.)
* \copyright AGPL3
* \date Thu Apr 18 21:19:49 2013
* \brief The CConfigurationCognionics handles the conf... |
e972e899591b56e1ab0990569a73b9c113f2a415e4139ef73d6361a8b081f031 | C/C++ | 1,212 | 50 | // SPDX-FileCopyrightText: Inria <thomas.prampart@inria.fr>
// SPDX-License-Identifier: AGPL-3.0-only
#pragma once
#include <QtCore>
#include <QQuickView>
#include <openvibe/ov_all.h>
#include <functional>
#include <string>
#include <vector>
namespace OpenViBE {
namespace Plugins {
namespace SimpleVisualization {
... |
10794bd176900c4e8e6bcc395a30cdf0d604df9273505e7fdfb2648bb9bede79 | C/C++ | 1,214 | 27 | //-----------------------------------------------
// Copyright 2009 Wellcome Trust Sanger Institute
// Written by Jared Simpson (js18@sanger.ac.uk)
// Released under the GPL license
//-----------------------------------------------
//
// SACAInducedCopying - Implementation of the
// induced copying algorithm as descri... |
778e2ea9ce2f4a09ea8cad0481ebd32908dfe317725054ea8fd3b079566ddc86 | C/C++ | 1,215 | 19 | #pragma once
void Cal_I_NK_pump_hori_cell(double Vm[N_t][Nthe + 3], double Tem, int t, double c_K_i_old[Nthe + 1],
double c_K_o_old[Nthe + 1], double c_Na_i_old[Nthe + 1], double c_Na_o_old[Nthe + 1], double pH,
double I_NK_pump[Nthe + 1]);
void Cal_I_NK_pump_Ventri_Myocy_cell(double Vm[N_t][Nthe + 3], double Tem... |
b6ba09a8e2c23a0fc2a17989799d9a163eecbc6932b468b372f580e91f469915 | C/C++ | 1,221 | 45 | //-----------------------------------------------
// Copyright 2010 Wellcome Trust Sanger Institute
// Written by Jared Simpson (js18@sanger.ac.uk)
// Released under the GPL
//-----------------------------------------------
//
// BWTWriterBinary - Write a run-length encoded BWT to a binary file
//
#ifndef BWTWRITERBIN... |
4c66f8d63eadfb4bae6d55ad4b4ff55ec8f0e87058c27790b3c34ab30a38a043 | C/C++ | 1,226 | 38 | #pragma once
#include "../ovasCConfigurationBuilder.h"
namespace OpenViBE {
namespace AcquisitionServer {
class CConfigurationEGIAmpServer final : public CConfigurationBuilder
{
public:
explicit CConfigurationEGIAmpServer(const char* gtkBuilderFilename) : CConfigurationBuilder(gtkBuilderFilename) { }
~CConfig... |
d14bd9453489061d9b45d59f10bbf30026804e7c9e18971ed8fd1b9c1fedf83a | C/C++ | 1,226 | 44 | #pragma once
#include "ovIPluginObjectDesc.h"
#include "../kernel/algorithm/ovIAlgorithmProto.h"
namespace OpenViBE {
namespace Plugins {
/**
* \class IAlgorithmDesc
* \author Yann Renard (INRIA/IRISA)
* \date 2007-11-06
* \brief Algorithm plugin descriptor
* \ingroup Group_Extend
*
* This class should be deri... |
d321e3bb962f68ff9d48a8ab448abd6f52c0d294aa24e0c1b4c0470d5348faf7 | C/C++ | 1,226 | 15 | #pragma once
// Boxes
//---------------------------------------------------------------------------------------------------
#define OVP_ClassId_BoxAlgorithm_EDFFileWriter OpenViBE::CIdentifier(0x0D454DCE, 0x470A4C02)
#define OVP_ClassId_BoxAlgorithm_EDFFileWriterDesc OpenViBE::CIdentifier... |
04832aa44022e805986a8242fe7365771c95eb69c378cd76a06ccc040961c872 | C/C++ | 1,230 | 49 | #ifndef DRAWWIDGET_H
#define DRAWWIDGET_H
#include <QWidget>
#include <QPainter>
#include <QPaintEvent>
#include <QMouseEvent>
#include <QPoint>
#include <QVector>
#include "datadef.h"
#include <QEvent>
class DrawWidget : public QWidget
{
Q_OBJECT
public:
explicit DrawWidget(QWidget *parent = 0);
void pai... |
084faa6d7fab5abc7abef356aa1a2d906dabfc6cabd8e9b0c3d4574bde4f1fc5 | C/C++ | 1,235 | 47 | // SPDX-FileCopyrightText: Inria <tristan.cabel@inria.fr>
// SPDX-License-Identifier: AGPL-3.0-only
#pragma once
#include <openvibe/ov_all.h>
#include <QtCore>
namespace OpenViBE {
namespace Designer {
class CommentObject : public QObject
{
Q_OBJECT
Q_PROPERTY(QString identifier READ identifier CONSTANT)
... |
f7487cef183149b2a2c12d4a59464a1cfae228ab3b0859940562368d9656bfb2 | C/C++ | 1,236 | 52 | #pragma once
#include "ovasIDriver.h"
#include "../ovasCHeader.h"
#include "../ovasCSettingsHelper.h"
namespace OpenViBE {
namespace AcquisitionServer {
/**
* \class CDriverGenericOscillator
* \author Yann Renard (INRIA)
*/
class CDriverGenericOscillator final : public IDriver
{
public:
explicit CDriverGeneri... |
00947d0e4eac723ed4b2408d6897d9943f02af7a72afc52595662f662ac4e9e9 | C/C++ | 1,241 | 44 | #ifndef UTILS_H
#define UTILS_H
#include <iostream>
/******************************************************************************
* Matrix Operators *
******************************************************************************/
/* Computes y = D*x, whe... |
3cf01714836e44f542cfbf15639ab69802a911135be1a6647d635441941f5bc6 | C/C++ | 1,241 | 47 | // SPDX-FileCopyrightText: Inria <tristan.cabel@inria.fr>
// SPDX-License-Identifier: AGPL-3.0-only
#pragma once
#include <openvibe/ov_all.h>
#include <QtCore>
#include <QPointF>
#include <QJSValue>
namespace OpenViBE {
namespace Designer {
class BoxObject;
class LinkObject : public QObject
{
Q_OBJECT
Q_... |
2a42032b30446682cfe34162b9f3839dc8e8a05c7ebb2dee374185c344089962 | C/C++ | 1,243 | 21 | #pragma once
// Boxes
//---------------------------------------------------------------------------------------------------
#define OVP_ClassId_BoxAlgorithm_Clock OpenViBE::CIdentifier(0x14CB4CFC, 0x6D064CB3)
#define OVP_ClassId_BoxAlgorithm_ClockDesc OpenViBE::CIdentifier(0x754C233D, 0x37DF04A3)
#defin... |
8393921d1469b4af374b3ced1ff1c73df82e91a37d6c6074d54fee88ac915cc9 | C/C++ | 1,243 | 46 | /**
* SPDX-FileCopyrightText: Inria <tristan.cabel@inria.fr>
* SPDX-License-Identifier: AGPL-3.0-only
*/
#pragma once
#include "parameterObject.h"
#include <openvibe/parameters/parameterInt.h>
namespace OpenViBE {
namespace Parameters {
class OV_PARAMETERS_OBJECT_EXPORT ParameterIntObject: public ParameterObject
{... |
7bbf7bc462ea8e17c574137cc4a62f146f7c6bf4aa25563df001feca5d8e235c | C/C++ | 1,250 | 38 | //===--- StringViewExtras.h ----------*- mode:c++;eval:(read-only-mode) -*-===//
// Do not edit! See README.txt.
// Part of the LLVM Project, under the Apache License v2.0 with LLVM Exceptions.
// See https://llvm.org/LICENSE.txt for license information.
// SPDX-License-Identifier: Apache-2.0 WITH LLVM-exception
... |
65c34c9ebd81693454e6ed1195f766afa2e8145f503be14c362101551e6bc90a | C/C++ | 1,251 | 40 | #pragma once
#include "../ovasCConfigurationBuilder.h"
#include "ovasIDriver.h"
namespace OpenViBE {
namespace AcquisitionServer {
/**
* \class CConfigurationDriverSimulatedDeviator
* \author Jussi T. Lindgren (Inria)
* \brief The CConfigurationDriverSimulatedDeviator handles the configuration dialog specific to t... |
f4c7c76088ed271115fa6a42ddf9a89beaa4ac7712c218c560eb82ec68af5854 | C/C++ | 1,254 | 48 | /**
* SPDX-FileCopyrightText: Inria <tristan.cabel@inria.fr>
* SPDX-License-Identifier: AGPL-3.0-only
*/
#pragma once
#include <QtCore>
#include <QtQml>
class QmlHelper : public QObject
{
Q_OBJECT
QML_ELEMENT
QML_SINGLETON
public:
static QmlHelper *instance();
static QmlHelper *create(QQmlEngi... |
74d59065cb5c2bb6281b954eb72bb5216b625fe9fae2c6083aa916af3cb6f973 | C/C++ | 1,255 | 54 | #pragma once
#include "defines.h"
#include <cinttypes>
#include <cstdlib> // size_t for unix
namespace FS {
class IEntryEnumeratorCallBack;
class FS_API IEntryEnumerator
{
public:
class FS_API IAttributes
{
public:
virtual bool isFile() = 0;
virtual bool isDirectory() = 0;
virtu... |
b8ef2913910fee93cf6b8fb3309eec988fa9926a01ee57d0a60cc88e06a6f99f | C/C++ | 1,258 | 59 | #ifndef __SAMPLETAB_H__
#define __SAMPLETAB_H__
#include <hdf5.h>
#include "sample.h"
#define SAMPLETAB_N_FIELDS 1
/* chunk size affects performance a lot
* small chunks = much faster writing of tables, but
* worse compression
*/
#define SAMPLETAB_CHUNK_SIZE 100
/* SampleTab holds information about Samples
... |
11f76c0265edeeb3c7c9f0116f1a135ccb4b2f44906ae0de4e51d43f804fc7c8 | C/C++ | 1,262 | 23 | double **psdmatrix(int dim); // mallocs a square double matrix
void free_psdmatrix(double **m); // frees the square double matrix
void dump_psdmatrix(double **m, int dim); // prints a square double matrix
void copy_psdmatrix(double **from, double **to, int dim); // copies
double **pdmatrix(int rows, int cols); // mall... |
62dbb1254cd9bf005f4bf9b09fe6496012ad48e539e2f9ba85dc379b4fccae19 | C/C++ | 1,264 | 41 | /*******************************************************************************
Copyright 2006-2012 Lukas Käll <lukas.kall@scilifelab.se>
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at
http:... |
1424a6471cfe3a402037c991b7242fc5c4d8b3ddc27a8266be02504c9565cd0c | C/C++ | 1,265 | 43 | //-----------------------------------------------
// Copyright 2010 Wellcome Trust Sanger Institute
// Written by Jared Simpson (js18@sanger.ac.uk)
// Released under the GPL license
//-----------------------------------------------
//
// BitChar - Fixed-size bitset of 8 bits
//
#ifndef BITCHAR_H
#define BITCHAR_H
#inc... |
46673ed81084a02bfe40df96a03d5337c209d1545e6e5fd11b01742ecd96b178 | C/C++ | 1,267 | 52 |
/********************
PhyloBayes MPI. Copyright 2010-2013 Nicolas Lartillot, Nicolas Rodrigue, Daniel Stubbs, Jacques Richer.
PhyloBayes is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License
as published by the Free Software Foundation, either version 3 of the L... |
e06c9ae7ee5d5cc58b26642346751fbc9737a0de1e624148fb152ee91d6c4c59 | C/C++ | 1,271 | 44 | //
// OpenViBE Tracker
//
#pragma once
#include "StreamRendererBase.h"
namespace OpenViBE {
namespace Tracker {
/**
* \class StreamRendererLabel
* \brief Renderer for any stream that is simply visualized as a labeled widget
* \author J. T. Lindgren
*
* @ fixme this class inherits a lot of junk from the base c... |
3f783535ac8851e64a55ac810b3ff6da6c55a4b3761bc19ce8016f9d10259ac1 | C/C++ | 1,273 | 50 | #ifndef LINEFILEUTILITIES_H
#define LINEFILEUTILITIES_H
#include <vector>
#include <string>
#include <cstring>
#include <cstdlib>
#include <sstream>
#include <iostream>
using namespace std;
// templated function to convert objects to strings
template <typename T>
inline
std::string ToString(const T & value) {
st... |
2e0191e779fc1bdb72dced7e27c1325a358f906350235710bbd8f8d3d30fa7fb | C/C++ | 1,280 | 46 | #pragma once
#include "../ovasCConfigurationBuilder.h"
#include "ovasIDriver.h"
namespace OpenViBE {
namespace AcquisitionServer {
/**
* \class CConfigurationMBTSmarting
* \author mBrainTrain dev team (mBrainTrain)
* \date Tue Oct 14 16:09:43 2014
* \brief The CConfigurationMBTSmarting handles the configuration d... |
609da6e0b326b65de53c7f995785ebcc417cc9ad44f3c9c8696cb019f318dd3f | C/C++ | 1,280 | 49 | //-----------------------------------------------
// Copyright 2010 Wellcome Trust Sanger Institute
// Written by Jared Simpson (js18@sanger.ac.uk)
// Released under the GPL
//-----------------------------------------------
//
// BitVector - Vector of bits. The structure
// can be locked by a mutex to guarentee atomic ... |
ba4cef12c5cf3307ed2c1ae9335551ab7f0668e92954825d088d9dd1e42631fe | C/C++ | 1,280 | 39 | /**
* SPDX-FileCopyrightText: Inria <thomas.prampart@inria.fr>
* SPDX-License-Identifier: AGPL-3.0-only
*/
#pragma once
#include <cstdint>
#include <memory>
#include <queue>
#include <utility>
#include <vector>
#include <ProtocolMsgHandler.h>
namespace OpenViBE {
namespace Services {
namespace TcpTagging {
// Cu... |
03c7c4878b00e6423a60853144ed40e3d3e72ce715f82166326b5f92ef8bf284 | C/C++ | 1,298 | 43 | #pragma once
#include <cstddef> // for size_t
#include "SvabaThreadUnit.h" // for svabaThreadUnit
#include "SvabaUtils.h"
#include "SeqLib/GenomicRegionCollection.h" // for GRC return type
class SvabaLogger;
class SvabaOptions;
class SvabaOutputWriter;
/// Encapsulates e... |
c6224baeae8ace89f2529e7c79044c8605d3d2239a56493443744c93ea387767 | C/C++ | 1,300 | 56 | #pragma once
#include <memory>
#include <unordered_map>
#include <vector>
#include <cstdint>
#include <vector>
#include <cassert>
#include <iostream>
#include <memory>
#include "htslib/hts.h"
#include "htslib/sam.h"
#include "htslib/bgzf.h"
#include "htslib/kstring.h"
#include "SeqLib/GenomicRegion.h"
#include "Seq... |
d3dd6c36276c3ca343baf5492b0806cb43f1b61fba7d7ee27b603470d0961dad | C/C++ | 1,300 | 48 | #pragma once
namespace SeqLib {
class BWAAligner;
}
#include "SvabaRead.h"
// object that holds functions for re-aligning a discordant read
// and checking if it is a true discordant read
class DiscordantRealigner {
public:
DiscordantRealigner() {}
~DiscordantRealigner() {}
// check if a read should be r... |
e978b5b6578c1ae3480afaa1cfebe4a0117e62322b34aaf84543799393722429 | C/C++ | 1,300 | 36 | /**
* SPDX-FileCopyrightText: Inria <thomas.prampart@inria.fr>
* SPDX-License-Identifier: AGPL-3.0-only
*/
#pragma once
#include <cstdint>
namespace OpenViBE {
namespace Services {
namespace TcpTagging {
// Wire-compatible, byte-for-byte identical to the legacy tcp-tagging plugin's
// Tag struct (extras/contrib/p... |
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