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The MIT License (MIT) Copyright (c) 2022 Émile Lemoine Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, pu...
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MIT License Copyright (C) guided-retraining authors 2021 Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, ...
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MIT License Copyright (c) 2021 Vemund Sigmundson Schøyen Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, ...
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The MIT License (MIT) Copyright (c) 2016 Cuppen Research Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, ...
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MIT License Copyright (c) 2023 Panagiotis (Panos) Fotiadis Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge...
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MIT License Copyright (c) 2021 THUML @ Tsinghua University Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge...
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The MIT License (MIT) Copyright (c) 2013-2021 Jeff Alstott Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge...
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License
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MIT License Copyright (c) 2018 Marcin Imielinski Laboratory Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merg...
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MIT License Copyright (c) 2022 Fernando Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, d...
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MIT License Copyright (c) 2023 Jiyun Han Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, ...
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MIT License Copyright (c) [year] [fullname] Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publis...
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MIT License Copyright (c) 2023 Bart Westerman Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publ...
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MIT License Copyright (c) 2023 VictorCSheng Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publis...
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MIT License Copyright (c) 2021 Multiscale Biomolecular Simulation Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify...
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MIT License Copyright (c) 2022 Antoine Cadiou (github.com/antocad) Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modif...
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License
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The MIT License (MIT) Copyright (c) 2011,2012,2013,2014 Ryan M. Layer Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, mod...
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License
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MIT License Copyright (c) 2019 Stanford University Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge,...
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MIT License Copyright (c) 2023 Agarwal & Dash et. al. Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, mer...
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License
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MIT License Copyright (c) 2020 Malek Itani, Tuochao Chen and Shyamnath Gollakota Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to us...
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MIT License Copyright (c) 2023 Hebrew SeniorLife - Marcus Insitute for Aging Research Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights ...
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License
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MIT License Copyright (c) 2017 Brett Trost, Zhuozhi Wang, and Bhooma Thiruvahindrapuram Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the right...
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License
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The MIT License (MIT) Copyright (c) 2020 Tomoki Hayashi <hayashi.tomoki@g.sp.m.is.nagoya-u.ac.jp> Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation...
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License
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MIT License Copyright (c) 2021 Barış Can Kuru, Daniel Müller-Komorowska, Oliver Braganza, Heinz Beck Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitat...
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License
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MIT License (MIT) Copyright (c) 2016-2021 Marcin Imielinski (mski@mskilab.org) Xiaotong Yao (xiy2006@med.cornell.edu) Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, includin...
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MIT License (MIT) Copyright (c) 2016-2019 Marcin Imielinski (mski@mskilab.org) Xiaotong Yao (xiy2006@med.cornell.edu) Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, includin...
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MIT License Copyright (c) 2026 Richard DeFazio Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, d...
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BSD 2-Clause License Copyright (c) 2023, Lucia Gomez Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met: 1. Redistributions of source code must retain the above copyright notice, this list of conditions and the following di...
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Copyright (c) 2017, Jun-Yan Zhu and Taesung Park All rights reserved. Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met: * Redistributions of source code must retain the above copyright notice, this list of conditions and th...
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BSD 2-Clause License Copyright (c) 2021, QiChang All rights reserved. Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met: 1. Redistributions of source code must retain the above copyright notice, this list of conditions and...
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Copyright (c) 2017, Mario Koddenbrock Copyright (c) 2017, Mbvalentin All rights reserved. Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met: * Redistributions of source code must retain the above copyright notice, th...
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License
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X11 License Copyright (C) 2013 by Whitehead Institute for Biomedical Research Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, c...
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License
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Copyright (c) 2022, Salesforce.com, Inc. All rights reserved. Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met: * Redistributions of source code must retain the above copyright notice, this list of conditions and the followin...
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BSD 3-Clause License Copyright (c) 2023, Zhengchen Cai Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met: 1. Redistributions of source code must retain the above copyright notice, this list of conditions and the following ...
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BSD 3-Clause License Copyright (c) 2023, Golia Shafiei Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met: 1. Redistributions of source code must retain the above copyright notice, this list of conditions and the following ...
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BSD 3-Clause License Copyright (c) 2023, New York Genome Center Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met: 1. Redistributions of source code must retain the above copyright notice, this list of conditions and the f...
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Copyright (c) 2016 - 2021 Blue Brain Project/EPFL All rights reserved. Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met: 1. Redistributions of source code must retain the above copyright notice, this list of conditions and ...
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BSD 3-Clause License Copyright (c) 2021, Mihailo Bjekić and Ana Lazović Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met: 1. Redistributions of source code must retain the above copyright notice, this list of conditions a...
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BSD 3-Clause License Copyright (c) 2021, Chris Keefe All rights reserved. Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met: 1. Redistributions of source code must retain the above copyright notice, this list of conditions...
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BSD 3-Clause License Copyright (c) 2022, INM-6 & IAS-6 All rights reserved. Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met: 1. Redistributions of source code must retain the above copyright notice, this list of conditio...
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BSD 3-Clause License Copyright (c) 2021, Ravinderjit Singh All rights reserved. Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met: 1. Redistributions of source code must retain the above copyright notice, this list of cond...
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BSD 3-Clause License Copyright (c) 2020, Sanath G. Govindarajan All rights reserved. Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met: 1. Redistributions of source code must retain the above copyright notice, this list of...
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BSD 3-Clause License Copyright (c) 2022, EMBL/Grzegorz Chojnowski (gchojnowski@embl-hamburg.de) All rights reserved. Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met: 1. Redistributions of source code must retain the above c...
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BSD 3-Clause License Copyright (c) 2021, EMBL/Grzegorz Chojnowski (gchojnowski@embl-hamburg.de) All rights reserved. Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met: 1. Redistributions of source code must retain the above c...
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BSD 3-Clause License Copyright (c) 2023, Peter Konradi and the Institute of Medical Informatics of the University Hospital RWTH Aachen Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met: 1. Redistributions of source code must ...
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BSD 4-Clause License with Paper Attribution Copyright [2023] [Benjamin Buch, Christina Junger and Gunther Notni] All rights reserved. Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met: 1. Redistributions of source code must ...
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The MIT License (MIT) Copyright (c) 2016 John Wiseman Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, pub...
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Percolator, qvality, sqt2pin, mzidentml2pin are distributed under Apache 2.0 license with the following boiler-plate meassage: Copyright 2006-2012 Lukas Käll <lukas.kall@scilifelab.se> Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with...
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# ----------------------------------------------------------------------- # # Copyright (c) 2023, UChicago Argonne, LLC. All rights reserved. # # # # Software Name: Fast Autonomous Scanning Toolkit (FAST) # # By: Argonne Na...
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*** License Agreement *** Lawrence Berkeley National Laboratory ACADEMIC, INTERNAL, RESEARCH & DEVELOPMENT, NON-COMMERCIAL USE ONLY, LICENSE geNomad Copyright (c) 2022, The Regents of the University of California, through Lawrence Berkeley National Laboratory (“Berkeley Lab”) subject to re...
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Apache License Version 2.0, January 2004 http://www.apache.org/licenses/ TERMS AND CONDITIONS FOR USE, REPRODUCTION, AND DISTRIBUTION 1. Definitions. "License" shall mean the terms and conditions for use, reproduction, ...
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Apache License Version 2.0, January 2004 http://www.apache.org/licenses/ TERMS AND CONDITIONS FOR USE, REPRODUCTION, AND DISTRIBUTION 1. Definitions. "License" shall mean the terms and conditions for use, reproduction, and distribution as defined b...
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Apache License Version 2.0, January 2004 http://www.apache.org/licenses/ TERMS AND CONDITIONS FOR USE, REPRODUCTION, AND DISTRIBUTION 1. Definitions. "License" shall mean the terms and conditions for use, reproduction, ...
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Apache License Version 2.0, January 2004 http://www.apache.org/licenses/ TERMS AND CONDITIONS FOR USE, REPRODUCTION, AND DISTRIBUTION 1. Definitions. "License" shall mean the terms and conditions for use, reproduction, ...
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Mozilla Public License Version 2.0 ================================== 1. Definitions -------------- 1.1. "Contributor" means each individual or legal entity that creates, contributes to the creation of, or owns Covered Software. 1.2. "Contributor Version" means the combination of the Contributions of oth...
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# Creative Commons Attribution 4.0 International Creative Commons Corporation (“Creative Commons”) is not a law firm and does not provide legal services or legal advice. Distribution of Creative Commons public licenses does not create a lawyer-client or other relationship. Creative Commons makes its licenses and relat...
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# Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International Creative Commons Corporation (“Creative Commons”) is not a law firm and does not provide legal services or legal advice. Distribution of Creative Commons public licenses does not create a lawyer-client or other relationship. Creative Commons mak...
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GNU GENERAL PUBLIC LICENSE Version 3, 29 June 2007 Copyright (C) 2007 Free Software Foundation, Inc. <http://fsf.org/> Everyone is permitted to copy and distribute verbatim copies of this license document, but changing it is not allowed. Preamb...
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MATLAB
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zef
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zef.h_source_tree.SourceTree
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MATLAB
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function NOP(varargin) end
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function [success] = i_am_dummy() % end
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MATLAB
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function plot_confusion_multiclass(app) end
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MATLAB
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function y = linfit(beta,x) y = beta(1)*x+beta(2); end
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MATLAB
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function load_udf_button_pushed(app) load_udf(app); end
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MATLAB
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function y = linearFunction(x,beta) y = beta(1)*x+beta(2); end
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MATLAB
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function load_model_button_pushed(app) load_model(app); end
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MATLAB
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3
function load_params_button_pushed(app) load_params(app); end
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MATLAB
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function Tn = tangent_vector(P,Cov) Tn = logm(P^-0.5*Cov*P^-0.5);
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MATLAB
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function [M] = normalisem (M, C) C = inv(sqrtm(C)); M = C * M * C;
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MATLAB
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function a = distance_riemann(A,B) a = sqrt(sum(log(eig(A,B)).^2));
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MATLAB
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[zef]=zef_postprocess_fem_mesh(zef);zef=zef_update_fig_details(zef);
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MATLAB
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function C = euclidean_geodesic(C1,C2,t) C = (1-t)*C1 + t*C2;
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MATLAB
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function Out = expm(X) [V D] = eig(X); Out = V*diag(exp(diag(D)))*V';
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MATLAB
71
4
function Out = logm(X) [V D] = eig(X); Out = V*diag(log(diag(D)))*V';
23c36e4448dc7ddaf0e288a9370e0d8ebe83cbdeb6b7395ad611a1b71af27d43
MATLAB
74
3
function a = distance_logeuclid(A,B) a = norm((logm(B)-logm(A)),'fro')^2;
bbf72ae12109bf0b43af5c002784206de2e1a111b530f3e438e3734ec3ff3b3b
MATLAB
74
3
function highlighted_node_changed(app) plot_model_structure(app); end
3d6f8df0519ca750783b5e39161ea9c0d92735cb743963b1673877621d523c78
MATLAB
77
10
function [h1] = revcor(spikes) %spikes = spike times in nel format end
dfe3d5197a52fb28b630c6b7189d8094c499b1fa35f7d5b205ee4f02a7be8e00
MATLAB
77
3
function a = distance_ld(A,B) a = sqrt(log(det((A+B)/2))-0.5*log(det(A*B)));
9991da9ca728e7641b4e87895a45cbfad43e49d9c69dae91192b8f294802b4b3
MATLAB
81
1
eval(zef.h_forward_simulation_table.Data{zef.forward_simulation_selected(1),3});
3e884ce9fcc4b101bca36d7308b42527f2cc02451849315767260a5fbf67bf16
MATLAB
83
5
function [A,B] = swap(A,B) %swap Swaps variable names % [A,B] = swap(A,B) end
5187d42206f6cf2e5ba3018964d33ddd9a781aad9d3b83bbddd9177d82a8bc37
MATLAB
83
3
function highlighted_ens_node_changed(app) plot_ensemble_coordinates(app); end
de572c7c9c9dfd3edb5fe212d5164fd1a3992845fa3abb6d97ad6c2e639b8007
MATLAB
83
1
zef_downsample_surfaces; zef_process_meshes; zef_source_interpolation; zef_update;
0572efa1a29d59d330f12d4431f611a77a0ed67f23dbd04b6f3120d16f94dd5e
MATLAB
84
3
function par_save(fname, model_collection) save(fname, 'model_collection'); end
2448aba5cff379902fe93109c9c2affe9fb39ee5d3c0fe1632f989d7bf7678ae
MATLAB
85
4
function Sind = formindexes(orders,S) p = length(orders); Sind = repmat(S,p,1); end
5fb21ca55aaa70f81da6fb289d99aec0f90934cb520bc5c20a1efdd7c7523259
MATLAB
86
3
function preview_parameter_estimation_button_pushed(app) plot_potentials(app); end
e9b24e832a54f65989e78ffef1b0b4e3af5475d79f3eef14818ed3660c887be7
MATLAB
86
3
function zef = zef_DBS_update_electrodes(zef) zef=zef_DBS_attach_electrodes(zef); end
03fe482e11cedaa9fa8310e6601fb33d271aecd099a6077541e81789fb817f72
MATLAB
87
5
function out_val = zef_eval_entry(in_var, entry_ind) out_val = in_var(entry_ind); end
e19288db934ac9be3e6a67c8bca088d42a93368979d70d016734aecb8b5ff552
MATLAB
90
5
function [app] = test_panel_3(app) perform_parameter_estimation_button_pushed(app); end
010d43e4725b62223a7d6cc82ba5710aa9f0d5e55f4d48eb0d70047b74906d1f
MATLAB
91
5
function load_rois_button_pushed(app) load_rois(app); plot_rois_preview(app); end
fc1564635d830bf4a1a1e58c44676cb8e6ba7e88680ed0a48ed1671d8de8d72e
MATLAB
91
5
function load_data_button_pushed(app) load_data(app); plot_data_preview(app); end
0df92cbd56f2d41cab28e35c3beb2aa26b294b5a3f142b8f9a3f0d85f2262a0f
MATLAB
92
6
function zef = zef_GMModel_open(zef) zef = zef_GMModel_window(zef); zef_GMModel_init; end
efb0b6ed26e03eecd2534ebd313621a1ab2d15de4fd2c18de4143fe9b4ea0ed6
MATLAB
92
4
function C = logeuclidean_geodesic(C1,C2,t) C = expm((1-t)*logm(C1) + t*logm(C2));
ed002c6624408e63d4ee9a844cf6d098a82e69d072f0c0d417d35c8fbfdf36f2
MATLAB
97
6
function y = logb(x,b) %logb Base b logarithm of x % y = logb(x,b) y = log(x)./log(b); end
225db491339aaa6fcd5d55ed79ca09c848d0e7ba5cf02c2797357fa1e317f3b5
MATLAB
106
3
function numNAN=bsliang_numNAN() % ÓÃÒ»¸öÊý×Ö´úÌæNANÒÔ·½±ãSPSS¼ÆËã numNAN=-1000;
669ad342893deddc11bc2d73c9eecae2e9d6222a0346fee94d89258ef2338e28
MATLAB
107
4
function y = sigmoid(x) % Sigmod function % Written by Mo Chen (sth4nth@gmail.com). y = exp(-log1pexp(-x));
1b9ff4771ceb7d159eb6dc0436048858ae239b629bcb32fd6cfc12ff8f1bdb40
MATLAB
108
3
function update_clustering_text(app) app.GlobalEM.Value = round(app.global_cluster_coefficient, 4); end
5a2ff11513ee2679ddc8a21505604f1a4a84468fe1197b8b557e1c6ac3dfd84d
MATLAB
109
4
function [ mini, maxi ] = minmax( stack ) mini = min( stack, [], 'all' ); maxi = max( stack, [], 'all' ); end
e63be271794da0638f896d353499263b1b51ea370783ad014f56c7609f384b28
MATLAB
112
4
zef.sensor_tags = cell(0); zef.current_sensors = 's'; zef.current_tag = 's'; zef = zef_create_sensors(zef,'s');
e8d0faad2a86adb1a935f7d3c69c6845414ea83a19496f5d34dc6d31ca0a34d8
MATLAB
113
4
function a = distance_opttransp(A,B) A12 = A^(0.5); a = sqrt(trace(A) + trace(B) - 2 * trace( (A12*B*A12)^0.5));