sha256 stringlengths 64 64 | language stringclasses 28
values | size int32 1 491k | lines int32 1 23.2k | content stringlengths 1 200k |
|---|---|---|---|---|
bff687b0d5ddc6ed517e02b7279f861e442af39dd03c21c3cafed1448986251e | NEURON | 1,428 | 79 | TITLE jsr.mod VCN conductances
COMMENT
Ih for VCN neurons - average from several studies in auditory neurons
Implementation by Paul B. Manis, April (JHU) and Sept, (UNC)1999.
revised 2/28/04 pbm
pmanis@med.unc.edu
Modifed implementation; includes all temperature scaling, passes modlunit
7/10/2014 pbm
ENDCOMMENT
... |
4117553d3503ae96d35aa05ac5967d10ee28b238f14a117077490c78f8a129a5 | NEURON | 1,461 | 94 | : HH TEA-sensitive Purkinje potassium current
: Created 8/5/02 - nwg
NEURON {
THREADSAFE
SUFFIX kpkj
USEION k READ ek WRITE ik
RANGE gbar, ik, gk
GLOBAL minf, hinf, mtau, htau
}
UNITS {
(mV) = (millivolt)
(mA) = (milliamp)
}
PARAMETER {
v (mV)
gbar = .004 (mho/cm2)
mivh = -24 (mV)
mik = 15.4 (mV)
mt... |
3e0dde9ec46ddf33d79f8fd5402551a93c08b999f6173d8c54bccf3e2b298ebf | NEURON | 1,471 | 92 | TITLE kdrglia
: Kalium delayed rectifier (AHP)
: twee gates met elk twee toestanden
:
: uit: Traub et al.
: A branching dendritic model of a rodent CA3
: pyramidal neurone.
UNITS {
(molar) = (1/liter)
(mV) = (millivolt)
(mA) = (milliamp)
(mM) = (millimolar)
}
INDEPENDENT {t FROM 0 TO 1 WITH 100 (ms)}
NEURON {
... |
2bdf2f9265d2c38b233c2c7b4d33ab7c5b9e3a78a5a59851f219af73f8e4df71 | NEURON | 1,520 | 64 | COMMENT
Iclamp2.mod: Electrode current injection, revised for our own use
I specifically needed more step changes in a single waveform than
were provided by the default code. This routine gives us 5 levels:
holding, 3 steps, and a final (holding?) level.
This version generates a pulse of duration at amplitude I for
... |
2a76be18bdf273a9540ac23efd5cfbf3e4c1ffbe945b88436d3dd2ba6b8ec946 | NEURON | 1,587 | 86 | : HH P-type Calcium current
: Created 8/13/02 - nwg
NEURON {
THREADSAFE
SUFFIX cap
USEION ca READ cai, cao WRITE ica
RANGE pcabar, ica
RANGE minf, mtau
RANGE monovalConc, monovalPerm
}
UNITS {
(mV) = (millivolt)
(mA) = (milliamp)
(mM) = (milli/liter)
F = 9.6485e4 (coul)
R = 8.3145 (joule/degC)
}
PARA... |
5f9b4e7f449918397d3635f95734d77e7b1187237273b9f7181a6b57b7eeaee1 | NEURON | 1,587 | 85 |
//Geometry of EndFoot
create EndFoot[4]
connect soma[0](1), EndFoot[0](0)
//connect EndFoot[0](1), EndFoot[1](0)
//connect EndFoot[0](1), EndFoot[2](0)
EndFoot[0] {
pt3dclear()
pt3dadd(-1,-1.67,0.12,1.34)
pt3dadd(-0.67,-1.34,0.12,1.34)
pt3dadd(-0.67,-0.67,0.12,1.34)
pt3dadd(-0.33,0,0.12,1.34)
pt3d... |
3245adc261a57512d6dbafcc793c3a8ad9039243e0b01538985254ac3b47bf63 | NEURON | 1,609 | 106 |
UNITS {
(mA) = (milliamp)
(mV) = (millivolt)
(molar) = (1/liter)
(mM) = (millimolar)
F = 96485 (coul)
R = 8.3134 (joule/degC)
}
PARAMETER {
v (mV)
celsius (degC)
PcalBar=0.00006622 (cm/s)
ki=.00002 (mM)
cai=5.e-5 (mM)
cao = 10 (mM)
q10m=11.45
q10Ampl=2.1
}... |
20fe5c5ee841c2ee7c37183181ebe93dd9ff05c2700538338c17718939411794 | NEURON | 1,618 | 101 | TITLE kir.mod
COMMENT
Inwardly rectifying potassium (Kir) currents
based on mathematical model from Leao et al (2012)
Ceballos CC, Li S, Roque AC, Tzounopoulos T, Leão RM (2016) Ih Equalizes Membrane Input Resistance in a Heterogeneous Population of Fusiform Neurons in the Dorsal Cochlear Nucleus. Front Cell Neuro... |
4313c29877fc57919afe776c4224ede1eb3ac342917b6ba1bdf8299d67c70af2 | NEURON | 1,619 | 124 |
UNITS {
(mA) = (milliamp)
(mV) = (millivolt)
: hier eigene Befehle
(molar) = (1/liter)
(mM) = (millimolar)
F = 96485 (coul)
R = 8.3134 (joule/degC)
}
PARAMETER {
v (mV)
celsius (degC)
PcalBar=0.00006622 (cm/s)
ki=.00002 (mM)
cai=5.e-5 (mM)
cao = 10 (mM)
q10m=11.45
q10Ampl=2.1
}
NEUR... |
28879b8c76819da88859b3ef0f8939f42cd2b19685099dd4d1825d73a89c460b | NEURON | 1,654 | 76 | objref VFSec[10000000]
//GapJunctionMaxNumber=800
for i = 1, NumberDendrites-SeedNumber-1 { dendrite[i] connect dendrite[i+SeedNumber](0), 1 //264
access dendrite[i+SeedNumber]
{ L=0.1 diam=3 } // L and dim in um define the geometry of small seeds
pt3dclear()
}
soma {
Ra = 100 // Ohm cm
c... |
d176ae80ea275f20943b29910d979609a2d560cfe91b3a16bf1748526b002b79 | NEURON | 1,667 | 2 | COMMENT
kca.mod
Calcium-dependent potassium channel
Based on
Pennefather (1990) -- sympathetic ganglion cells
taken from
Reuveni et al (1993) -- neocortical cells
Author: Zach Mainen, Salk Institute, 1995, zach@salk.edu
Kole: the caix increased from 1 -> 4, Ra 0.01 to 0.05 and Rb 0.02 to 0.1, according to Schaefer ... |
1e7d2d923ab875cf3c6888f204387b60a666d4a606bc57d99b5b4795f6d9bad2 | NEURON | 1,694 | 76 | // Octopus cell, stick representation
// From Spencer et al., Front. Comput. Neurosci., 22 October 2012 | https://doi.org/10.3389/fncom.2012.00083
// Figure 1.
objref soma
soma = new SectionList()
objref primarydendrite
primarydendrite = new SectionList()
objref hillock
hillock = new SectionList()
objref unmyelinateda... |
0172aa3f84209913fc471f96123526c95f11a8f4fdebf667059357e3ed997333 | NEURON | 1,757 | 82 | objref soma
soma = new SectionList()
objref primarydendrite
primarydendrite = new SectionList()
objref secondarydendrite
secondarydendrite = new SectionList()
objref hillock
hillock = new SectionList()
objref unmyelinatedaxon
unmyelinatedaxon = new SectionList()
objref myelinatedaxon
myelinatedaxon = new SectionList()
... |
f395775e0f7ed3a0b8a860c601a208999d91eaa5b0843009c89491b96de70b12 | NEURON | 1,801 | 109 |
: CA1 pyramidal neuron to study INaP properties and repetitive firing (Uebachs et al. 2010)
: The file was downloaded from https://senselab.med.yale.edu/ModelDB/showmodel.cshtml?model=125152
UNITS {
(mA) = (milliamp)
(mV) = (millivolt)
(molar) = (1/liter)
(mM) = (millimolar)
F = 96485 (coul)
... |
85cbf4f3c9f51a6dc1e5d8e33c8595ed658070510a9e019215e560bc474ba27f | NEURON | 1,844 | 56 | load_file("CalciumParameters.hoc")
// UI
objref vBoxCaWave, plotShapeCaWaveCai, graphCaWaveCai
// Sets initial UI and simulation params.
proc initParamsCaWave() {
TimeDelayCaWave = 1000
InitIp3 = 0.05
}
// Shows Calcium Wave UI.
proc showCaWaveUi() {
vBoxCaWave = new VBox()
vBoxCaWave.intercept(1)
... |
02133b69db9585bda177de81750d82ecb3f3f71e4dbd33b8ab3794495ef5f017 | NEURON | 1,918 | 90 | objref soma
soma = new SectionList()
objref primarydendrite
primarydendrite = new SectionList()
objref secondarydendrite
secondarydendrite = new SectionList()
objref hillock
hillock = new SectionList()
objref unmyelinatedaxon
unmyelinatedaxon = new SectionList()
objref myelinatedaxon
myelinatedaxon = new SectionList()
... |
142af89c201a8a531709923e9dcf6bf9c1d2800b3568b6dfeaa23cc8203292bc | NEURON | 1,949 | 1 |
TITLE decay of internal calcium concentration
:
: Internal calcium concentration due to calcium currents and pump.
: Differential equations.
:
: Simple model of ATPase pump with 3 kinetic constants (Destexhe 92)
: Cai + P <-> CaP -> Cao + P (k1,k2,k3)
: A Michaelis-Menten approximation is assumed, which reduces t... |
90b6ac2d3b015dd38314e2df386c9bd1bb963abcc1cf1a62a3d95efda108b7e9 | NEURON | 1,970 | 63 | // This file is original file from Neuron Data base
// https://senselab.med.yale.edu
// Accession:97985
//A 3-d reconstructed neuron model can be simulated in parallel on a dozen or so processors and experience almost linear speedup. Network models can be simulated when there are more processors than cells.
//Referenc... |
fb6ed608bb9cda7c1d82863e2d9600ec77e64517922bd1bed93ceb811afae3e4 | NEURON | 1,997 | 65 | // UI
objref vBoxFrequencySimulations
// IClampSin on soma
objref stimFreq
// Sets IClampSin params on the soma.
// $1 - Delay
// $2 - Duration
// $3 - Frequency
// $4 - Amplitude
// $5 - Phase
proc simulateFrequency() {
soma {
stimFreq = new IClampSin(0.5)
stimFreq.del = $1 // ms
st... |
a54916a573abb48be2715a9353d17837b2977ba24580937465387d1543bcbcf4 | NEURON | 2,006 | 111 |
COMMENT
kv.mod
Potassium channel, Hodgkin-Huxley style kinetics
Kinetic rates based roughly on Sah et al. and Hamill et al. (1991)
Author: Zach Mainen, Salk Institute, 1995, zach@salk.edu
ENDCOMMENT
INDEPENDENT {t FROM 0 TO 1 WITH 1 (ms)}
NEURON {
SUFFIX Kv
USEION k READ ek WRITE ik
RANGE n, gk, gbar
RANGE ... |
850460349688936b896d9e0d8aa234432ce05f1c2e6b3dd30e37753ab9c028d4 | NEURON | 2,033 | 88 | COMMENT
cleftXmtr
This is simple state model that generates "cleft" transmitter, through
the following scheme:
A netreceive block receives the driving event. This forces XV (the vesicle
state) to be set to XMax to mimic the release of a vesicle.
Then:
XV --> XC --> XU
where XV is the vesicle transmitter, XC is the cl... |
1a86c0cb722d598b3ff19a7088eeb28e42a8cab92a2a5721960eeadd5568de65 | NEURON | 2,043 | 92 | TITLE kdpyr.mod DCN pyramidal cell model, delayed rectifier
COMMENT
This is part of a model implements a Dorsal Cochlear Nucleus Pyramidal point cell
based on kinetic data from Kanold and Manis (1999) and Kanold's dissertation (1999)
-- 15 Jan 1999 P. Manis
Added export of start states for some variables to... |
205a247ca7ee197e1f02f986450b77ae3e1e3fe1ad6d29758e6cd63395ff286c | NEURON | 2,108 | 111 | TITLE Slow Ca-dependent potassium current
:
: Ca++ dependent K+ current IC responsible for slow AHP
: Differential equations
:
: Model based on a first order kinetic scheme
:
: <closed> + n cai <-> <open> (alpha,beta)
:
: Following this model, the activation fct will be half-activated at
: a concentrati... |
abd4cc2091656f092613594bfee8adb29955a6bbf48e37b11f461b3185e876bc | NEURON | 2,124 | 102 | TITLE T-type calcium channel (Cav3.3)
UNITS {
(mV) = (millivolt)
(mA) = (milliamp)
(S) = (siemens)
(molar) = (1/liter)
(mM) = (millimolar)
FARADAY = (faraday) (coulomb)
R = (k-mole) (joule/degC)
}
NEURON {
SUFFIX cav33
USEION ca READ cai, cao WRITE ica VALENCE 2
RANGE pbar, mvh... |
c548b2ef7a0697680cf251ca6fde2c0f356809ccf59d44b86876820ae68eef1d | NEURON | 2,138 | 110 | TITLE Glutamate-induced glutamate release (GIGR)
UNITS {
(molar) = (1/liter)
(mM) = (millimolar)
(uM) = (micromolar)
}
NEURON {
POINT_PROCESS gigr
RANGE K2, K5, KX, KY, KZ, kc, kf, eps, V0, V1, VM2, VM3, V4, VM5
RANGE n, r1, r2, r3, ru, rb, V, B, Rmax, VmaxA, VmaxN, KN, KA, abg
RANGE x0, y... |
9861e5f2603338fc0058295bda08f080aa4db96ab0924e70926d97ed82defddf | NEURON | 2,139 | 103 | TITLE h current for Octopus cells of Cochlear Nucleus
: From Bal and Oertel (2000)
: Modified, P. Manis July 2014, 2017
: Parameters from McGinley et al. paper
NEURON {
THREADSAFE
SUFFIX hcnobo
NONSPECIFIC_CURRENT i
RANGE gbar, eh, gh, q10tau
GLOBAL hinf, tau1, tau2
}
UNITS {
(mA) = (millia... |
c9f7568780b0557bd2b79689150d1cb291bb4fb9fd1f8e454926901803253fd6 | NEURON | 2,174 | 1 |
COMMENT
changed from (AS Oct0899)
ca.mod to lead to thalamic ca current inspired by destexhe and huguenrd
Uses fixed eca instead of GHK eqn
ENDCOMMENT
INDEPENDENT {t FROM 0 TO 1 WITH 1 (ms)}
NEURON {
SUFFIX it2
USEION ca READ eca WRITE ica
RANGE m, h, gcaT, icaT, gcabar
RANGE minf, hinf, mtau, htau, inactF, ac... |
e3987031417f36584230f528ac40423590f31412fc22f00904e26840b9f1bd16 | NEURON | 2,214 | 101 | TITLE T-type calcium channel (Cav3.2)
UNITS {
(mV) = (millivolt)
(mA) = (milliamp)
(S) = (siemens)
(molar) = (1/liter)
(mM) = (millimolar)
FARADAY = (faraday) (coulomb)
R = (k-mole) (joule/degC)
}
NEURON {
SUFFIX cav32
USEION ca READ cai, cao WRITE ica VALENCE 2
RANGE pbar, ica... |
7c64ec08ea8633a117a2f3cbbd513505fa89a3065a6ef30a5dc4d892fc26bad3 | NEURON | 2,236 | 1 | COMMENT
ca.mod
Uses fixed eca instead of GHK eqn
HVA Ca current
Based on Reuveni, Friedman, Amitai and Gutnick (1993) J. Neurosci. 13:
4609-4621.
Author: Zach Mainen, Salk Institute, 1994, zach@salk.edu
ENDCOMMENT
INDEPENDENT {t FROM 0 TO 1 WITH 1 (ms)}
NEURON {
SUFFIX ca
USEION ca READ eca WRITE ica
RANGE m, ... |
24794706f96447922aba0d0d0faf0c85f3e27a28c82a84063807931177a09421 | NEURON | 2,248 | 109 | TITLE CaPCalyx.mod The presynaptic calcium current at the MNTB calyx of Held
COMMENT
NEURON implementation of Calcium current from Borst and Sakmann, 1998.
Equations are basic HH; parameters are taken from Figure 8 legend in that paper.
Original implementation by Paul B. Manis, October 2007
Contact: pmanis@med.unc... |
e773e2ebb9796c127efb66766a3793801bfa395a0b5e637169b5367bb2a66c42 | NEURON | 2,283 | 101 | TITLE h current for Octopus cells of Cochlear Nucleus
: From Bal and Oertel (2000)
: M.Migliore Oct. 2001
: Modified, P. Manis July 2014.
NEURON {
THREADSAFE
SUFFIX hcno
NONSPECIFIC_CURRENT i
RANGE gbar, eh, gh
GLOBAL hinf, tau1, tau2
}
UNITS {
(mA) = (milliamp)
(mV) = (millivolt)
(pS... |
84691fea158a9043708ec751fbb2445478b4d3f2f91f1f9bd9174bd2ff14110c | NEURON | 2,322 | 94 | : the dynamics mechanism of the FRAP is developed by Savchenko and others. 2018
NEURON {
SUFFIX FRAP
USEION frapion READ frapiono, frapioni WRITE frapioni VALENCE 1
GLOBAL vol, Buffer0
RANGE frapion0, Alpha
}
DEFINE NANN 4
UNITS {
(molar) = (1/liter)
(mM) = (millimolar)
(um) = (micron)
... |
cc39414e406bc8121dd05ced46f5200d4790e1e1372b5765607b35bf78bb0718 | NEURON | 2,355 | 98 | : BK-type Purkinje calcium-activated potassium current
: Created 8/19/02 - nwg
NEURON {
THREADSAFE
SUFFIX bkpkj
USEION k READ ek WRITE ik
USEION ca READ cai
RANGE gbar, ik, gbkpkj
GLOBAL minf, mtau, hinf, htau, zinf, ztau
GLOBAL m_vh, m_k, mtau_y0, mtau_vh1, mtau_vh2, m... |
0a9b0bd3b87341694da74af9ca894f0039c46b7716878a299650452816db4e86 | NEURON | 2,396 | 103 | TITLE nacn.mod A sodium conductance for a ventral cochlear nucleus neuron model
COMMENT
NEURON implementation of Jason Rothman's measurements of VCN conductances.
This file implements the average brain sodium current used in the Rothman model.
In the absence of direct measurements in the VCN, this is a fair assumpt... |
23adb160d2175ce3f21829b3a3208d59d9170d00006e80305c0f23ed87b97418 | NEURON | 2,399 | 103 | TITLE T-type calcium current (Cav3.2)
UNITS {
(mV) = (millivolt)
(mA) = (milliamp)
(S) = (siemens)
(molar) = (1/liter)
(mM) = (millimolar)
FARADAY = (faraday) (coulomb)
R = (k-mole) (joule/degC)
}
NEURON {
SUFFIX cat32
USEION ca READ cai, cao WRITE ica VALENCE 2
RANGE pbar, ica... |
4f7f3c94f4fe6d0f801ad1b6cd4c6614a83628ff16056d42dcecfb2e20eb57b3 | NEURON | 2,399 | 103 | TITLE T-type calcium current (Cav3.3)
UNITS {
(mV) = (millivolt)
(mA) = (milliamp)
(S) = (siemens)
(molar) = (1/liter)
(mM) = (millimolar)
FARADAY = (faraday) (coulomb)
R = (k-mole) (joule/degC)
}
NEURON {
SUFFIX cat33
USEION ca READ cai, cao WRITE ica VALENCE 2
RANGE pbar, ica... |
d115540b3fcfde98ec7ae69575df4c05b0a85788285054d5a1e3e5a09b038269 | NEURON | 2,403 | 76 | // UI
objref vBoxSpatialVoltage, voltagePlot, graphDendrogramm
// IClamp on soma
objref currentDendrogramm
// Sets IClamp params on the soma.
// $1 - Amplitude
// $2 - Duration
proc stimulDendro() {
soma {
currentDendrogramm = new IClamp(0.5)
currentDendrogramm.del = 0 // ms
currentDendrog... |
e7652f163a6f7322863199d7aeacfa5522f818bb002a1e2542b1a15ed4da8f1f | NEURON | 2,429 | 100 | TITLE na.mod A sodium channel for cochlear nucleus neurons
COMMENT
NEURON implementation of Jason Rothman's measurements of VCN conductances.
This file implements the average brain sodium current used in the Rothman model.
In the absence of direct measurements in the VCN, this is a fair assumption.
The model differ... |
59a2282802d5e1a8c4a657974cd0ad339336376b5346d7ae1cebe6ac7089b42c | NEURON | 2,437 | 123 | TITLE kis.mod DCN pyramidal cell model Slow transient K current
COMMENT
This model implements the slow transient potassium current from
Dorsal Cochlear Nucleus Pyramidal cells
based on kinetic data from Kanold and Manis (1999) and Kanold's dissertation (1999)
-- 15 Jan 1999 P. Manis
2/10/02, 7/24/2014. P. Manis.... |
e1227e667d5644df8d81ec4d2f4e5287e2d95ca44fde20a32a77caed49996545 | NEURON | 2,479 | 121 | : 6-state bushy cell model from Yang, Ramamurthy, Neef and Xu-Friedman
: "Low somatic sodium conducdtance... " J. Neurosci 26: 11999, 2016
:
: Implementation by P.B. Manis
: Kinetic data taken from Table 1
: Transition states from Figure 3A
NEURON {
THREADSAFE
SUFFIX nabu
USEION na READ ena WRITE ina
R... |
3c201eceb924682eeab1ebc296e6a0927b9a4c4b0595042da94b73f2ce4fb42c | NEURON | 2,481 | 100 | TITLE decay of submembrane calcium concentration
:
: Internal calcium concentration due to calcium currents and pump.
: Differential equations.
:
: This file contains two mechanisms:
:
: 1. Simple model of ATPase pump with 3 kinetic constants (Destexhe 1992)
:
: Cai + P <-> CaP -> Cao + P (k1,k2,k3)
:
: A Mich... |
9b169238a68ad9a5f711cb6c86ce602ffa4ebcd0f45137dad4ebc48888d7a065 | NEURON | 2,492 | 97 | TITLE inward rectifier potassium (Kir) channel
COMMENT
Mod File by A. Hanuschkin <AH, 2011> for:
Yim MY, Hanuschkin A, Wolfart J (2015) Hippocampus 25:297-308.
http://onlinelibrary.wiley.com/doi/10.1002/hipo.22373/abstract
Channel description and parameters from:
Stegen M, Kirchheim F, Hanuschkin A, Staszewski O, Ve... |
d96cbfcea60cdd6322fc397394e9259efbabf69388c225266e31db8277f11282 | NEURON | 2,543 | 80 | // Diameter distribution
objref diamDistrLeaves, diamDistrStalks
diamStep = 0
nanoDistrLoaded = 0 // Boolean
// Random
objref randomDiameters
randomDiameters = new Random()
// Shows window to select a .TXT file with diameter distribution.
proc loadDiamDistrFile() { local divisions localobj radiiFile, line, neuronLine,... |
982006097db2e7212dd524ac5f0f3ca8e0b1c2653841135279a556c32129a946 | NEURON | 2,581 | 130 | TITLE nap.mod Persistent sodium conductance
COMMENT
Persistent sodium current from deSchutter and Bower, J. Neurophys.
71:375, 1994.
2/10/02, 10/10/2014. P. Manis.
ENDCOMMENT
UNITS {
(mA) = (milliamp)
(mV) = (millivolt)
}
NEURON {
THREADSAFE
SUFFIX nap
USEION na READ ena WRITE ina
RANGE nap_inf,... |
69f43d4d78f7a2ed20621989e80d8256a16b0e70b4b45d1f6a7305861ff346d5 | NEURON | 2,637 | 147 |
NEURON {
SUFFIX GluTrans8st
RANGE part, C1, C2, C3, C4, C5, C6, C7, C8
GLOBAL k12, k21, k23, k32, k34, k43, k45, k54, k56, k65, k67, k76, k78, k87, k18, k81
GLOBAL Nain, Naout, Kin, Kout, Gluin, charge
RANGE itrans, Gluout, density
NONSPECIFIC_CURRENT itrans
}
UNITS {
(l) = (liter)
(nA) = (nanoamp)
(... |
e31bbc5f54f00ca74848f7c26d32d5d336ea835f765072b440a7dc93eb14a2a8 | NEURON | 2,642 | 75 | // This file is original file from Neuron Data base
// https://senselab.med.yale.edu
// Accession:97985
//A 3-d reconstructed neuron model can be simulated in parallel on a dozen or so processors and experience almost linear speedup. Network models can be simulated when there are more processors than cells.
//Referenc... |
4344be664df1658b77be28e47f40e4eb90acdd821d88a9c02d5f48c573e9ecc4 | NEURON | 2,645 | 134 | TITLE ihpyr.mod DCN pyramidal cell model H-current
COMMENT
This model is part a Dorsal Cochlear Nucleus Pyramidal point cell
based on kinetic data from Kanold and Manis (1999) and Kanold's dissertation (1999)
-- 15 Jan 1999 P. Manis
Added export of start states for some variables to do perturbation tests
These s... |
0bfdfce50ad301b8d00d04229fc04d1319a447bfc2b99131e776d483a928a8fe | NEURON | 2,695 | 117 | TITLE simple AMPA receptors
NEURON {
POINT_PROCESS adaptive_zahra_AMPA
RANGE R, g, ina, Alpha, Beta, iAMPA
USEION na WRITE ina
NONSPECIFIC_CURRENT iAMPA
POINTER weight
RANGE g, Alpha, Beta, Erev, gmax, Cdur, iNMDA,mg, Cmax, eta, alpha, treshf,synon,flag
USEION ca_nmda READ ca_nmdai WRITE ica_nmda VALENCE ... |
6dfa6ff3a417241734f47e6d8341eb00a2382157618ec5bb58b8e970851f656c | NEURON | 2,714 | 74 | objref trajectories_tvec // vector of doubles
objref trajectories_name // list of strings
objref trajectories_vvec // list of vectors of doubles
trajectories_name = new List()
trajectories_vvec = new List()
// $o1 - (list of strings) the name of section array where the watched variable resides, e.g. { "soma... |
0a6529738d73df415c6ccabb18ded29406663ef1bd5f5fc1c069d76b83a4252a | NEURON | 2,734 | 15 | TITLE Axonal voltage-gated potassium current
COMMENT
Hallermann, de Kock, Stuart and Kole, Nature Neuroscience, 2012
doi:10.1038/nn.3132
n8*h1 + n8*h2 Hodgkin-Huxley model
ENDCOMMENT
NEURON {
SUFFIX Kv1
USEION k READ ek WRITE ik
RANGE gkv1, ikv1, gbar
GLOBAL ninf, ntau
GLOBAL h1inf, h1tau
GLOBAL h2inf, h2... |
432c7d7483770b5884fb51925f82e61e5a7c57ccd4d48e50dfd2b78ca3387b75 | NEURON | 2,740 | 108 | TITLE R-type calcium current (Cav2.3)
UNITS {
(mV) = (millivolt)
(mA) = (milliamp)
(S) = (siemens)
(molar) = (1/liter)
(mM) = (millimolar)
FARADAY = (faraday) (coulomb)
R = (k-mole) (joule/degC)
}
NEURON {
SUFFIX car
USEION ca READ cai, cao WRITE ica VALENCE 2
RANGE pbar, ical
... |
0ba66f497aa2de69376ed717344e6364d6bca60a8c9cf907e1db309dd1aa502e | NEURON | 2,753 | 104 | TITLE klt.mod The low threshold conductance of cochlear nucleus neurons
COMMENT
NEURON implementation of Jason Rothman's measurements of VCN conductances.
This file implements the transient potassium current found in ventral cochlear
nucleus "Type I" cells, which are largely "stellate" or "multipolar" cells (Manis... |
51027fe4cf871855d1c35ea5fb931e690b72dedcc2e3a0af74d775806c02e974 | NEURON | 2,771 | 120 | : $Id: pregen.mod 3 2003-02-11 18:36:05Z hines $
: comments at end
NEURON {
POINT_PROCESS SpikeGenerator
RANGE y
RANGE fast_invl, slow_invl, burst_len, start, end
RANGE noise
}
PARAMETER {
fast_invl = 1 (ms) : time between spikes in a burst (msec)
slow_invl = 50 (ms) : burst period (msec)
: actually, above... |
162c1cabf2fc79bf36f75d172a1a0a542f4f804a1b8c7e0cc5586d075a035149 | NEURON | 2,805 | 75 | load_file("nrngui.hoc")
load_file("CellInit.hoc")
load_file("CellUpdate.hoc")
load_file("MechanismSwitch.hoc")
load_file("MainUi.hoc")
load_file("GeometricalParameters.hoc")
load_file("Simulations/SimFrapInCircleGeometry.hoc")
load_file("Simulations/SimFrapLine.hoc")
load_file("Simulations/SimSpatialVoltageDistribution... |
f445f951f5fbab4fe82317f5a8b06b8a209a8a4e86b4cc1b7b9927e2f1ae5501 | NEURON | 2,818 | 125 | : AdEx GIF model
: This implementation is for the equations in:
: Naud R, Marcille N, Clopath C, Gerstner W. Firing patterns in the adaptive
: exponential integrate-and-fire model. Biol Cybern. 2008 Nov;99(4-5):335-47. doi:
: 10.1007/s00422-008-0264-7. Epub 2008 Nov 15. PubMed PMID: 19011922; PubMed
: Central PMCID: ... |
8429111170cc9a713e64e318dad1a58bfc2b904406c0c7db6a50b5e20bd73c40 | NEURON | 2,837 | 137 | TITLE pyrna.mod DCN pyramidal cell model sodium channel
COMMENT
Revised version of DCN Pyramidal cell model sodium channel
This model implements part of a Dorsal Cochlear Nucleus Pyramidal point cell
based on kinetic data from Kanold and Manis (1999) and Kanold's dissertation (1999)
-- 15 Jan 1999 P. Manis
This... |
b43efc68d3b2748b50ab57b2df0e68a8d5c1d5767c6614512f3b0da1438666e0 | NEURON | 2,858 | 129 | : ATM GIF model
: This implementation the adaptive theshold model (ATM) is for the equations in:
: Fontaine, B., Benichourx, V., Joris, P.X., and Brette, R. Prediciting
: spike timing in hhigy synchronous auditory neurons at different sound
: levels. J. Neurophysiol. 110: 1672-1688, 2013.
: Which in turn is based on:... |
17aef5732f8767b4ee00334958bc0d1594cfc02a47cfb7df706224b0a4b22fd3 | NEURON | 2,888 | 101 | load_file("nrngui.hoc")
objref input, NetInput
NumberLeaves=12 // Number of leaves per stalk
//objref gsec[1000000] // NUmber of sections
NumberListSoma=0
// SizeTotal is a total number of geometrical objects
SizeTotal=NumberDendrites*NumberLeaves+1+NumberListSoma*NumberLeaves
//**********************************
... |
02e22c5113201b312a749e02235165d3c3b50063fe6e7d00080a573e55d3bbd0 | NEURON | 2,905 | 136 | TITLE jsrnaf.mod VCN Na conductance, fast model
COMMENT
gnaf is the modified form used in his
1993 M.S. thesis (as in Rothman et al., J. Neurophysiol. 70:2562, 1993),
with rapid recovery from inactivation for potentials below rest.
Implementation by Paul B. Manis, April and Sept, 1999.
ENDCOMMENT
UNITS {
(mA) = (mi... |
02752a1b3eeec3a2066ad4f16df8a3d64241eb2fc83e7e793602d5721d62f287 | NEURON | 2,944 | 142 | TITLE ihpyr_adj.mod DCN pyramidal cell model H-current
COMMENT
This model is part a Dorsal Cochlear Nucleus Pyramidal point cell
based on kinetic data from Kanold and Manis (1999) and Kanold's dissertation (1999)
-- 15 Jan 1999 P. Manis
Added export of start states for some variables to do perturbation tests
The... |
f1af7a05ce69ec3738a1c4472861c1c3aee8279e376f0750a2898c739e6f631c | NEURON | 2,991 | 128 | TITLE kif.mod DCN pyramidal cell model fast transient current
COMMENT
This model implements a fast transient potassium current from
Dorsal Cochlear Nucleus Pyramidal cells
based on kinetic data from Kanold and Manis (1999) and Kanold's dissertation (1999)
-- 15 Jan 1999 P. Manis
2/10/02. P. Manis.
... |
a6b4aaafe2154e0b3798499e8531f94a36fd4d028bcc8c6c9d2f174715f44b88 | NEURON | 3,019 | 134 | TITLE detailed model of Glycine receptors
COMMENT
-----------------------------------------------------------------------------
Kinetic model of Glycine-A receptors
====================================
C -- C1 -- C2 -- O1
| |
D1 -- D2 -- D3
----------------------------------------... |
d9bd524f244572cae82f723fff7fda7ff78f588681a6d0b6982a39b1ec8ed430 | NEURON | 3,102 | 109 | TITLE klt.mod The low threshold conductance of cochlear nucleus neurons
COMMENT
NEURON implementation of Jason Rothman's measurements of VCN conductances.
This file implements the low threshold potassium current found in several brainstem
nuclei of the auditory system, including the spherical and globular bushy ce... |
dab9284e46686691df6d05266c9e842e5b054d3dc749a417a08d869fe31da5ae | NEURON | 3,138 | 169 | COMMENT
Updated Exp2Syn synapse with Mg-blocked nmda channel.
Defaul values of parameters (time constants etc) set to match synaptic channels in
striatal medium spiny neurons (Du et al., 2017; Chapman et al., 2003; Ding et al., 2008).
Robert . Lindroos @ ki . se
original comment:
________________
Two state kinetic ... |
5895b36750722421d015396c69939298c95d5015f65340583cf9a9580153eee1 | NEURON | 3,221 | 112 | TITLE kht.mod The high threshold conductance of cochlear nucleus neurons
COMMENT
NEURON implementation of Jason Rothman's measurements of VCN conductances.
This file implements the high threshold potassium current found in several brainstem
nuclei of the auditory system, including the spherical and globular bushy ... |
6b89c98407f9ad9ff26b5b1a3bcff84a8779b3039d92ab6a7e5d2c704523bb04 | NEURON | 3,244 | 131 | TITLE Model of glycine receptors
COMMENT
-----------------------------------------------------------------------------
Kinetic model of glycine receptors
===============================
6-state gating model with
2 open states provide dual exponential response.
O1
|
... |
fc9a3e169c5eb588c53f03b215d1f6c8b68dcd65fcc1222236a8464f3592521f | NEURON | 3,256 | 121 | TITLE HVA L-type calcium current (Cav1.2)
UNITS {
(mV) = (millivolt)
(mA) = (milliamp)
(S) = (siemens)
(molar) = (1/liter)
(mM) = (millimolar)
FARADAY = (faraday) (coulomb)
R = (k-mole) (joule/degC)
}
NEURON {
THREADSAFE
SUFFIX cal12
USEION ca READ cai, cao WRITE ica VALENCE 2
... |
59e4811768dd5c37c8d271bbf9a5ac4fb49b9a002a5978416def945fbefec0d6 | NEURON | 3,287 | 176 | COMMENT
Updated Exp2Syn synapse with Mg-blocked nmda channel.
Defaul values of parameters (time constants etc) set to match synaptic channels in
striatal medium spiny neurons (Du et al., 2017; Chapman et al., 2003; Ding et al., 2008).
Robert . Lindroos @ ki . se
original comment:
________________
Two state kinetic ... |
a25534f52aebe9546039be7e3d2c75b4a021280ede596f970b7cbffecf5c09bc | NEURON | 3,306 | 147 | TITLE detailed model of Glycine receptors
COMMENT
-----------------------------------------------------------------------------
Kinetic model of Glycine-A receptors
====================================
C -- C1 -- C2
| |
O1 O2
---------------------------------------------------... |
d7eb6b256075ab0331dfe1dda543d83ac1da56fa30f94e3300cdc82039a6a5f9 | NEURON | 3,321 | 80 | // UI
objref vBoxCadifusParams
// Inits Calcium parameters.
proc initCaParams() {
DCa_cadifus = 0.15
TBufs_cadifus = 0.07
kfs_cadifus = 1000
KDs_cadifus = 10
TBufm_cadifus = 0.0075
kfm_cadifus = 1000
KDm_cadifus = 0.24
DBufm_cadifus = 0.05
cath_cadifus = 2e-005
gamma_cadifus = 2... |
5de2a1e140c0409226349e70fa9c1391201370b70f67b1373f0cf14a20262bb6 | NEURON | 3,397 | 149 | TITLE detailed model of Glycine receptors
COMMENT
-----------------------------------------------------------------------------
Kinetic model of Glycine-A receptors: Pascal Legendre (Mauthner Cell)
====================================
C0--C1--C2--O1
|
C3--O2
-------------------... |
811af9dc6ce45a1dfb87ee328a326697b9ef08c254eafdfe6853e23833c5d8fd | NEURON | 3,410 | 133 | COMMENT
The model of Glutamate transporter.
is based on two papers,
from the paper
1. Zhang Z1, Tao Z, Gameiro A, Barcelona S, Braams S, Rauen T, Grewer C.
Transport direction determines the kinetics of substrate transport by the glutamate transporter EAAC1.
Proc Natl Acad Sci U S A. 2007 Nov 13;104(46):18025-30... |
2e0c1968e6675bce0f719179e397a49fd829371515e8bc5a6e2b395e137f78ea | NEURON | 3,458 | 125 | TITLE LVA L-type calcium current (Cav1.3)
UNITS {
(mV) = (millivolt)
(mA) = (milliamp)
(S) = (siemens)
(molar) = (1/liter)
(mM) = (millimolar)
FARADAY = (faraday) (coulomb)
R = (k-mole) (joule/degC)
}
NEURON {
THREADSAFE
SUFFIX cal13
USEION ca READ cai, cao WRITE ica VALENCE 2
... |
b80b83a039a38b6827ec8e4ea6eda3e3d827c472d5830aff5387fe84051bc3c6 | NEURON | 3,532 | 142 | TITLE NMDA receptor--one of the two input stimulation of our model
: This mechanism is taken from the Neuron data base "exp2syn.mod"
: The original comment are below between "COMMENT" and "ENDCOMMENT".
:
: Our modifications:
:
: 1.We added a single receptor conductance factor: "g_max=0.000045 (uS)".
: An event of... |
617254f55548556a76fd6a13927ed542c67908ad17fbb28ba829a5e7e9de5391 | NEURON | 3,563 | 143 | // Number of Gaps distributed in the model astrocyte
GapJunctionMaxNumber = NumberDendrites+1
objref gaps[GapJunctionMaxNumber]
NumberListSoma = 1
// Total number of geometrical objects
// NumberDendrites is a Number in the file of 3D reconstruction
SizeTotal = (NumberDendrites+NumberListSoma)*NumberLeaves+1
// Leaves... |
26c51edb9b228332e6ffc5d1720476b4331ff7ed13a4f7841cb033f9aca82583 | NEURON | 3,617 | 96 | // UI
objref vBoxConstantStimulations
// Stimulators
objref electricalStim, current, synapticInput, NetInput
// Electrical stimulation
// This set of parameters define the single synaptic input.
// The user can add here as much as possible.
// $1 - Current delay
// $2 - Current duration
// $3 - Current amplitude
// $4... |
52e27a91699692276cac762739a8edde6af2cf58a94b250b2b7df7ed08ca4b26 | NEURON | 3,696 | 138 | // This file is original file from Neuron Data base
// https://senselab.med.yale.edu
// Accession:97985
//A 3-d reconstructed neuron model can be simulated in parallel on a dozen or so processors and experience almost linear speedup. Network models can be simulated when there are more processors than cells.
//Referenc... |
20d7334abe5711abb5532a6e8326333b02e1addfe80354c56ce601df3a5da37d | NEURON | 3,852 | 142 | : Eight state kinetic sodium channel gating scheme
: Modified from k3st.mod, chapter 9.9 (example 9.7)
: of the NEURON book
: 12 August 2008, Christoph Schmidt-Hieber
:
: accompanies the publication:
: Schmidt-Hieber C, Bischofberger J. (2010)
: Fast sodium channel gating supports localized and efficient
: axonal acti... |
9cd8f2701c438a45473be124c7e15a3122bc51674834c74526a46ede62ceb0ae | NEURON | 3,863 | 155 | TITLE ihsgc-apical.mod - Spiral Ganglion Cell Ih current for Apical Region
COMMENT
Ih for Spiral ganglion cells.
Kinetcs are based on average fits to mouse SGCs,
This model is for just the apical cell group.
Data used to establish the kinetic parameters were collected by
Qing Liu and Robin Davis (Rutgers).
Data were t... |
c9d1bf7cb09b691d8ad3a0d57e79ebee4d2bf2e7c4e52e26451916eb3e2ff9da | NEURON | 3,866 | 188 | :
: ichanWT2005.mod
:
: Alan Goldin Lab, University of California, Irvine
: Jay Lickfett - Last Modified: 6 July 2005
:
: This file is the Nav1.1 wild-type channel model described in:
:
: Barela et al. An Epilepsy Mutation in the Sodium Channel SCN1A That Decreases
: Channel Excitability. J. Neurosci. 26(1... |
b0b41d507ab407dd17ed043a156aaf4b9e340be5adb90016fdf9e474ac3f0b8b | NEURON | 3,926 | 103 | objref NetInput1[TotalNUmberGapJunction+2]
// *********** Calcium stimulation sets*******************************************
objref r, inputSt[TotalNUmberGapJunction+2], StimTrigger[TotalNUmberGapJunction+2]
r = new Random(Initseed)
// $1 BasicStimulus,
// $2 Interval,
// $3 ECaresting,
// $4 Tau1St,
// $5 ... |
ddc6ce8248a91817a346a403d7265b0db5fe1b1edcb3536e92d9a8263b4c97ab | NEURON | 3,937 | 154 | TITLE ihsgc-basalmiddle.mod - Spiral Ganglion Cell Ih current for basal and middle Regions
COMMENT
Ih for Spiral ganglion cells.
Kinetcs are based on average fits to mouse SGCs,
This model is for the basal and middle cell groups (averaged).
Data used to establish the kinetic parameters were collected by
Qing Liu and R... |
9e7fa8e327d9becc353628be2f3eb695b4891b6183804984066f5a407e9a080a | NEURON | 3,995 | 141 | TITLE simple AMPA receptors
COMMENT
-----------------------------------------------------------------------------
Simple model for glutamate AMPA receptors
=========================================
- FIRST-ORDER KINETICS, FIT TO WHOLE-CELL RECORDINGS
Whole-cell recorded postsynaptic currents mediated by AMP... |
c2709636fe9bde4460ae621e8717dd09c68238d8cc7844729ee8983be7f79a13 | NEURON | 4,033 | 161 | TITLE Glutamatergic synapse with short-term plasticity
NEURON {
THREADSAFE
POINT_PROCESS glutamate_sat
RANGE tau1_ampa, tau2_ampa, tau1_nmda, tau2_nmda
RANGE g_ampa, g_nmda, i_ampa, i_nmda, weight_ampa, weight_nmda
RANGE e_ampa, e_nmda, g, i, q, mg
RANGE tau, tauR, tauF, U, u0
RANGE ca_rati... |
9ea7e7b7de48bb04fa4c147ec416d825d8376b975065e48a3f21011fafed3ffe | NEURON | 4,118 | 164 | TITLE Glutamatergic synapse with short-term plasticity
NEURON {
THREADSAFE
POINT_PROCESS tmGlut
RANGE tau1_ampa, tau2_ampa, tau1_nmda, tau2_nmda
RANGE g_ampa, g_nmda, i_ampa, i_nmda, nmda_ratio
RANGE e_ampa, e_nmda, g, i, q, mg
RANGE tau, tauR, tauF, U, u0
RANGE ca_ratio_ampa, ca_ratio_nmda... |
bd5b3a2ec072fe1e91e48186dbd50f9c837a108d56a49896fe3728f4e6403aa1 | NEURON | 4,132 | 142 | TITLE simple AMPA receptors
COMMENT
-----------------------------------------------------------------------------
Simple model for glutamate AMPA receptors
=========================================
- FIRST-ORDER KINETICS, FIT TO WHOLE-CELL RECORDINGS
Whole-cell recorded postsynaptic currents mediated by AMP... |
f3d82ff4ea7f8c652fd00027edab38d950cbad580b7aec1d79e446ce86ebb572 | NEURON | 4,151 | 157 | TITLE Calcium ion accumulation and diffusion with pump
: The internal coordinate system is set up in PROCEDURE coord_cadifus()
: and must be executed before computing the concentrations.
: The scale factors set up in this procedure do not have to be recomputed
: when diam or DFree are changed.
: The amount of calcium i... |
841538280596378cea802ac7cbf7c61b9e4ca6abe050608d57cfac3689a85e7b | NEURON | 4,191 | 187 | : Nav1.2 (SCN2A) - mutated channel
:
: Eight state kinetic sodium channel gating scheme
: Modified from k3st.mod, chapter 9.9 (example 9.7)
: of the NEURON book
: 12 August 2008, Christoph Schmidt-Hieber
:
: accompanies the publication:
: Schmidt-Hieber C, Bischofberger J. (2010)
: Fast sodium channel gating supports l... |
29c11b76dda73188193a5cbf9470610a433ae684e099a0fbbcd67deef24c263f | NEURON | 4,193 | 187 | : Nav1.2 (SCN2A) - mutated channel
:
: Eight state kinetic sodium channel gating scheme
: Modified from k3st.mod, chapter 9.9 (example 9.7)
: of the NEURON book
: 12 August 2008, Christoph Schmidt-Hieber
:
: accompanies the publication:
: Schmidt-Hieber C, Bischofberger J. (2010)
: Fast sodium channel gating supports l... |
f77ba41529137a2ac0a79858652c33c761a05d71805e19c217bb544cf19a157b | NEURON | 4,272 | 155 | TITLE simple AMPA receptors
COMMENT
-----------------------------------------------------------------------------
Simple model for glutamate AMPA receptors
=========================================
- FIRST-ORDER KINETICS, FIT TO WHOLE-CELL RECORDINGS
Whole-cell recorded postsynaptic currents mediated by AMP... |
00231bfae63e2e85ab45989a3262820a4be6d77d6959701849afd0d5f79a1cf9 | NEURON | 4,332 | 184 | : Nav1.6 (SCN8A)
:
: Eight state kinetic sodium channel gating scheme
: Modified from k3st.mod, chapter 9.9 (example 9.7)
: of the NEURON book
: 12 August 2008, Christoph Schmidt-Hieber
:
: accompanies the publication:
: Schmidt-Hieber C, Bischofberger J. (2010)
: Fast sodium channel gating supports localized ... |
b82c3b3df577b737817a4bd2dd84cb6b56a5cf36578267058b871e78c36f494b | NEURON | 4,356 | 187 | : Nav1.2 (SCN2A)
:
: Eight state kinetic sodium channel gating scheme
: Modified from k3st.mod, chapter 9.9 (example 9.7)
: of the NEURON book
: 12 August 2008, Christoph Schmidt-Hieber
:
: accompanies the publication:
: Schmidt-Hieber C, Bischofberger J. (2010)
: Fast sodium channel gating supports localized ... |
e1044920ba49dae6c4367d3388092653e6d5608b3291f661d491d5ea8f22fbaa | NEURON | 4,358 | 187 | : Nav1.2 (SCN2A)
:
: Eight state kinetic sodium channel gating scheme
: Modified from k3st.mod, chapter 9.9 (example 9.7)
: of the NEURON book
: 12 August 2008, Christoph Schmidt-Hieber
:
: accompanies the publication:
: Schmidt-Hieber C, Bischofberger J. (2010)
: Fast sodium channel gating supports localized ... |
cd7f5bff5aaa923552abcd4a0e1feb63240dd51959e10599a2a438bed2cacd55 | NEURON | 4,382 | 196 | TITLE Rsg sodium channel
: Resurgent sodium channel (with blocking particle)
: with updated kinetic parameters from Raman and Bean
NEURON {
SUFFIX naRsg
USEION na READ ena WRITE ina
RANGE gna, gbar
}
UNITS {
(mV) = (millivolt)
(S) = (siemens)
}
PARAMETER {
gbar = .015 (S/cm2)
: kinetic parameters
Co... |
64a007699cca62bcccd654621e39173bb7270b27604596a6f1d4695aa7fd6b8f | NEURON | 4,384 | 138 | TITLE nacn.mod A sodium conductance for a ventral cochlear nucleus neuron model
COMMENT
NEURON implementation of Jason Rothman's measurements of VCN conductances.
This file implements a modified version of the average brain sodium current
used in the Rothman and Manis 2003 models.
The model differs from th... |
bf3986e31d78f56e4d0921dcb7490cc2afe9382d64e5b94c76ee04b33a718f88 | NEURON | 4,416 | 161 | TITLE simple AMPA receptors
COMMENT
-----------------------------------------------------------------------------
Simple model for glutamate AMPA receptors
=========================================
- FIRST-ORDER KINETICS, FIT TO WHOLE-CELL RECORDINGS
Whole-cell recorded postsynaptic currents mediated by AMP... |
94b2fc840a2349add6bdf5c09c0d4e24fab30ad2cf413eb43b508de0bab08d23 | NEURON | 4,418 | 161 | TITLE simple AMPA receptors
COMMENT
-----------------------------------------------------------------------------
Simple model for glutamate AMPA receptors
=========================================
- FIRST-ORDER KINETICS, FIT TO WHOLE-CELL RECORDINGS
Whole-cell recorded postsynaptic currents mediated by AMP... |
f2bb976fd588f71db394f7e11c76ada959915524f70503d3eeaf87382b266dc3 | NEURON | 4,419 | 169 | TITLE simple AMPA receptors
COMMENT
-----------------------------------------------------------------------------
Simple model for glutamate AMPA receptors
=========================================
- FIRST-ORDER KINETICS, FIT TO WHOLE-CELL RECORDINGS
Whole-cell recorded postsynaptic currents mediated by AMP... |
4b02a51fddf7a38b5e3e2fb9898dfb874a3b582783d18615bbeac0cf6578a301 | NEURON | 4,457 | 148 | // Calcium Gap Junctions
objref gapsca[SizeTotal*2]
// Random
objref randomStretch
objref randomLeavesDiameters
randomLeavesDiameters = new Random()
// Sets rresistance and potential to gaps.
// $1 - Gap resistance
// $2 - Potential
proc res_gap() {
for i = 2, NumberDendrites-2 {
gaps[i].r = $1
ga... |
a1fa741bc09b8bc3e48b55b1b4b6ce097eedd2624d308221f5c227950261ebf4 | NEURON | 4,544 | 175 | : Eight state kinetic sodium channel gating scheme
: Modified from k3st.mod, chapter 9.9 (example 9.7)
: of the NEURON book
: 12 August 2008, Christoph Schmidt-Hieber
: accompanies the publication:
: Schmidt-Hieber C, Bischofberger J. (2010)
: Fast sodium channel gating supports localized and efficient
: axonal action... |
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