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COMMENT
This NEURON file has been generated by org.neuroml.export (see https://github.com/NeuroML/org.neuroml.export)
org.neuroml.export v1.5.3
org.neuroml.model v1.5.3
jLEMS v0.9.9.0
ENDCOMMENT
NEUR... |
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COMMENT
This NEURON file has been generated by org.neuroml.export (see https://github.com/NeuroML/org.neuroml.export)
org.neuroml.export v1.5.3
org.neuroml.model v1.5.3
jLEMS v0.9.9.0
ENDCOMMENT
NEURON ... |
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COMMENT
This NEURON file has been generated by org.neuroml.export (see https://github.com/NeuroML/org.neuroml.export)
org.neuroml.export v1.5.3
org.neuroml.model v1.5.3
jLEMS v0.9.9.0
ENDCOMMENT
NEUR... |
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COMMENT
This NEURON file has been generated by org.neuroml.export (see https://github.com/NeuroML/org.neuroml.export)
org.neuroml.export v1.5.3
org.neuroml.model v1.5.3
jLEMS v0.9.9.0
ENDCOMMENT
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COMMENT
This NEURON file has been generated by org.neuroml.export (see https://github.com/NeuroML/org.neuroml.export)
org.neuroml.export v1.5.3
org.neuroml.model v1.5.3
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ENDCOMMENT
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COMMENT
This NEURON file has been generated by org.neuroml.export (see https://github.com/NeuroML/org.neuroml.export)
org.neuroml.export v1.5.3
org.neuroml.model v1.5.3
jLEMS v0.9.9.0
ENDCOMMENT
NEURON... |
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COMMENT
This NEURON file has been generated by org.neuroml.export (see https://github.com/NeuroML/org.neuroml.export)
org.neuroml.export v1.5.3
org.neuroml.model v1.5.3
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ENDCOMMENT
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COMMENT
This NEURON file has been generated by org.neuroml.export (see https://github.com/NeuroML/org.neuroml.export)
org.neuroml.export v1.5.3
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NEU... |
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COMMENT
This NEURON file has been generated by org.neuroml.export (see https://github.com/NeuroML/org.neuroml.export)
org.neuroml.export v1.5.3
org.neuroml.model v1.5.3
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ENDCOMMENT
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COMMENT
This NEURON file has been generated by org.neuroml.export (see https://github.com/NeuroML/org.neuroml.export)
org.neuroml.export v1.5.3
org.neuroml.model v1.5.3
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ENDCOMMENT
NEU... |
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COMMENT
This NEURON file has been generated by org.neuroml.export (see https://github.com/NeuroML/org.neuroml.export)
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ENDCOMM... |
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COMMENT
This NEURON file has been generated by org.neuroml.export (see https://github.com/NeuroML/org.neuroml.export)
org.neuroml.export v1.5.3
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ENDCOMMENT
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COMMENT
This NEURON file has been generated by org.neuroml.export (see https://github.com/NeuroML/org.neuroml.export)
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ENDCOMMENT
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COMMENT
This NEURON file has been generated by org.neuroml.export (see https://github.com/NeuroML/org.neuroml.export)
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ENDCOMMENT
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COMMENT
This NEURON file has been generated by org.neuroml.export (see https://github.com/NeuroML/org.neuroml.export)
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ENDCOMMENT
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COMMENT
This NEURON file has been generated by org.neuroml.export (see https://github.com/NeuroML/org.neuroml.export)
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ENDCOMMEN... |
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COMMENT
This NEURON file has been generated by org.neuroml.export (see https://github.com/NeuroML/org.neuroml.export)
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COMMENT
This NEURON file has been generated by org.neuroml.export (see https://github.com/NeuroML/org.neuroml.export)
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ENDCOMMENT
NEURON... |
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COMMENT
This NEURON file has been generated by org.neuroml.export (see https://github.com/NeuroML/org.neuroml.export)
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COMMENT
This NEURON file has been generated by org.neuroml.export (see https://github.com/NeuroML/org.neuroml.export)
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COMMENT
This NEURON file has been generated by org.neuroml.export (see https://github.com/NeuroML/org.neuroml.export)
org.neuroml.export v1.5.3
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b07cb04d8f1d18e25b3d2e595fcaa955a39a6574fd32a186d590c15f1f9d1881 | NEURON | 12,486 | 374 | /*--------------------------------------------------------------------
06/16
Jessica Gaines and Katharine Polasek
04/15
Lane Heyboer
Julia Slopsema
2/02
Cameron C. McIntyre
SIMULATION OF PNS MYELINATED MOTOR AXON
This model is described in detail in:
Gaines JS, Finn KE, Slopsema JP, Heyboer LA, Po... |
fdde0bbd4460c004f2b25ec7c5f6e7733eb1aff4ee5cd0a828319793bcf1d787 | NEURON | 12,532 | 374 | /*--------------------------------------------------------------------
06/16
Jessica Gaines and Katharine Polasek
04/15
Lane Heyboer
Julia Slopsema
2/02
Cameron C. McIntyre
SIMULATION OF PNS MYELINATED SENSORY AXON
This model is described in detail in:
Gaines JS, Finn KE, Slopsema JP, Heyboer LA, ... |
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COMMENT
This NEURON file has been generated by org.neuroml.export (see https://github.com/NeuroML/org.neuroml.export)
org.neuroml.export v1.5.3
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ENDCOMMENT
NEURON ... |
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COMMENT
This NEURON file has been generated by org.neuroml.export (see https://github.com/NeuroML/org.neuroml.export)
org.neuroml.export v1.5.3
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ENDCOMMENT
NEUR... |
09df28dbcdb9cb8c47920e3b81b457c4eef7f1ed4d250b1528b3c7b5dadacf32 | NEURON | 13,020 | 422 | /* File description ***********************************************************/
/*
2/02
Cameron C. McIntyre
SIMULATION OF PNS MYELINATED AXON
This model is described in detail in:
McIntyre CC, Richardson AG, and Grill WM. Modeling the excitability of
mammalian nerve fibers: influence of afterpotentials on t... |
f6a7c820521f7e166e4042b460d7f7e7f02eaab4de895193cc0fb5f3e07d66ed | NEURON | 13,037 | 378 | TITLE Mod file for component: Component(id=na type=ionChannelHH)
COMMENT
This NEURON file has been generated by org.neuroml.export (see https://github.com/NeuroML/org.neuroml.export)
org.neuroml.export v1.5.3
org.neuroml.model v1.5.3
jLEMS v0.9.9.0
ENDCOMMENT
NEURON {... |
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COMMENT
This NEURON file has been generated by org.neuroml.export (see https://github.com/NeuroML/org.neuroml.export)
org.neuroml.export v1.5.3
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ENDCOMMENT
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COMMENT
This NEURON file has been generated by org.neuroml.export (see https://github.com/NeuroML/org.neuroml.export)
org.neuroml.export v1.5.3
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ENDCOMMENT
NE... |
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COMMENT
This NEURON file has been generated by org.neuroml.export (see https://github.com/NeuroML/org.neuroml.export)
org.neuroml.export v1.5.3
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ENDCOMMEN... |
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COMMENT
This NEURON file has been generated by org.neuroml.export (see https://github.com/NeuroML/org.neuroml.export)
org.neuroml.export v1.5.3
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ENDCOMMEN... |
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COMMENT
This NEURON file has been generated by org.neuroml.export (see https://github.com/NeuroML/org.neuroml.export)
org.neuroml.export v1.5.3
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ENDCOMMENT
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COMMENT
This NEURON file has been generated by org.neuroml.export (see https://github.com/NeuroML/org.neuroml.export)
org.neuroml.export v1.5.3
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ENDCOMMENT
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/*
2/02
Cameron C. McIntyre
SIMULATION OF PNS MYELINATED AXON
This model is described in detail in:
McIntyre CC, Richardson AG, and Grill WM. Modeling the excitability of
mammalian nerve fibers: influence of afterpotentials on t... |
afa9a1cb416e09ea4dcd2a80ae335a60b1e0929b093ec485d8346218a409f491 | NEURON | 14,250 | 405 | TITLE Mod file for component: Component(id=Nap_Et2 type=ionChannelHH)
COMMENT
This NEURON file has been generated by org.neuroml.export (see https://github.com/NeuroML/org.neuroml.export)
org.neuroml.export v1.5.3
org.neuroml.model v1.5.3
jLEMS v0.9.9.0
ENDCOMMENT
NEU... |
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COMMENT
This NEURON file has been generated by org.neuroml.export (see https://github.com/NeuroML/org.neuroml.export)
org.neuroml.export v1.5.3
org.neuroml.model v1.5.3
jLEMS v0.9.9.0
ENDCOMMENT
NEU... |
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COMMENT
This NEURON file has been generated by org.neuroml.export (see https://github.com/NeuroML/org.neuroml.export)
org.neuroml.export v1.5.3
org.neuroml.model v1.5.3
jLEMS v0.9.9.0
ENDCOMMENT
NEURON... |
1f75b92c4b56f462e18bf1542cb58123439adb51aacfd0ee3164cad218d23366 | NEURON | 14,328 | 480 | /* File description ***********************************************************/
/*
2/02
Cameron C. McIntyre
SIMULATION OF PNS MYELINATED AXON
This model is described in detail in:
McIntyre CC, Richardson AG, and Grill WM. Modeling the excitability of
mammalian nerve fibers: influence of afterpotentials on... |
46bf71fbe8890a4a5a6a3bb72a089eefe44e5b7662e0ab89053b53a15f00ba1d | NEURON | 14,516 | 482 | /* File description ***********************************************************/
/*
2/02
Cameron C. McIntyre
SIMULATION OF PNS MYELINATED AXON
This model is described in detail in:
McIntyre CC, Richardson AG, and Grill WM. Modeling the excitability of
mammalian nerve fibers: influence of afterpotentials on... |
ec1549bdc8a8c0207700e44791188b4e8fda04bde845f98f92a7a348891781e3 | NEURON | 14,697 | 399 | TITLE Mod file for component: Component(id=kap type=ionChannelHH)
COMMENT
This NEURON file has been generated by org.neuroml.export (see https://github.com/NeuroML/org.neuroml.export)
org.neuroml.export v1.5.3
org.neuroml.model v1.5.3
jLEMS v0.9.9.0
ENDCOMMENT
NEURON ... |
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COMMENT
This NEURON file has been generated by org.neuroml.export (see https://github.com/NeuroML/org.neuroml.export)
org.neuroml.export v1.5.3
org.neuroml.model v1.5.3
jLEMS v0.9.9.0
ENDCOMMENT
NEURON ... |
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COMMENT
This NEURON file has been generated by org.neuroml.export (see https://github.com/NeuroML/org.neuroml.export)
org.neuroml.export v1.5.3
org.neuroml.model v1.5.3
jLEMS v0.9.9.0
ENDCOMMENT
NEURON ... |
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COMMENT
This NEURON file has been generated by org.neuroml.export (see https://github.com/NeuroML/org.neuroml.export)
org.neuroml.export v1.5.3
org.neuroml.model v1.5.3
jLEMS v0.9.9.0
ENDCOMMENT
NEURON ... |
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COMMENT
This NEURON file has been generated by org.neuroml.export (see https://github.com/NeuroML/org.neuroml.export)
org.neuroml.export v1.5.3
org.neuroml.model v1.5.3
jLEMS v0.9.9.0
ENDCOMMENT
NEU... |
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COMMENT
This NEURON file has been generated by org.neuroml.export (see https://github.com/NeuroML/org.neuroml.export)
org.neuroml.export v1.5.3
org.neuroml.model v1.5.3
jLEMS v0.9.9.0
ENDCOMMENT
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COMMENT
This NEURON file has been generated by org.neuroml.export (see https://github.com/NeuroML/org.neuroml.export)
org.neuroml.export v1.5.3
org.neuroml.model v1.5.3
jLEMS v0.9.9.0
ENDCOMMENT
NEURON ... |
b8d6911081a6be0054b8ae8b5e1263b35fafb2919ea8fb5af8a4ffc17df1e96a | NEURON | 15,934 | 438 | TITLE Mod file for component: Component(id=nax type=ionChannelHH)
COMMENT
This NEURON file has been generated by org.neuroml.export (see https://github.com/NeuroML/org.neuroml.export)
org.neuroml.export v1.5.3
org.neuroml.model v1.5.3
jLEMS v0.9.9.0
ENDCOMMENT
NEURON ... |
f0ac70617841a17919fd9dde75ded2f11de2874928871554e44491379e6224a6 | NEURON | 16,167 | 442 | TITLE Mod file for component: Component(id=na3 type=ionChannelHH)
COMMENT
This NEURON file has been generated by org.neuroml.export (see https://github.com/NeuroML/org.neuroml.export)
org.neuroml.export v1.5.3
org.neuroml.model v1.5.3
jLEMS v0.9.9.0
ENDCOMMENT
NEURON ... |
fee8f59770da2a3c179eee46c5c401958d07411025c31e1ac11fa461602dfd5f | NEURON | 16,178 | 444 | TITLE Mod file for component: Component(id=na3 type=ionChannelHH)
COMMENT
This NEURON file has been generated by org.neuroml.export (see https://github.com/NeuroML/org.neuroml.export)
org.neuroml.export v1.5.3
org.neuroml.model v1.5.3
jLEMS v0.9.9.0
ENDCOMMENT
NEURON ... |
909d24cbba65433134d0bbdabeb8ae7ca98a77be3687f2e9c6e660068c4da579 | NEURON | 16,256 | 510 | /*--------------------------------------------------------------------
06/16
Jessica Gaines and Katharine Polasek
04/15
Lane Heyboer
Julia Slopsema
2/02
Cameron C. McIntyre
SIMULATION OF PNS MYELINATED MOTOR AXON
This model is described in detail in:
Gaines JS, Finn KE, Slopsema JP, Heyboer LA, Po... |
05e2026afa08fc3c3e76c8265fe9908b56e38e42cfa6f2c93dd5a5ea97172993 | NEURON | 16,302 | 510 | /*--------------------------------------------------------------------
06/16
Jessica Gaines and Katharine Polasek
04/15
Lane Heyboer
Julia Slopsema
2/02
Cameron C. McIntyre
SIMULATION OF PNS MYELINATED SENSORY AXON
This model is described in detail in:
Gaines JS, Finn KE, Slopsema JP, Heyboer LA, ... |
508df9eadbcb1ff4e1850ee77304ea4bb714d6479d2164bc8ad18f8c7b3f9513 | NEURON | 16,445 | 512 | /*--------------------------------------------------------------------
06/16
Jessica Gaines and Katharine Polasek
04/15
Lane Heyboer
Julia Slopsema
2/02
Cameron C. McIntyre
SIMULATION OF PNS MYELINATED MOTOR AXON
This model is described in detail in:
Gaines JS, Finn KE, Slopsema JP, Heyboer LA, Po... |
a675df36de1893ff519456009be3ebaa3b692e1634526b0a14b2123462f19224 | NEURON | 16,491 | 512 | /*--------------------------------------------------------------------
06/16
Jessica Gaines and Katharine Polasek
04/15
Lane Heyboer
Julia Slopsema
2/02
Cameron C. McIntyre
SIMULATION OF PNS MYELINATED SENSORY AXON
This model is described in detail in:
Gaines JS, Finn KE, Slopsema JP, Heyboer LA, ... |
4d02b01735df7bc56cbfd0d1c8105b81cbc470c1be6f33d6958dd0646cc55e17 | NEURON | 16,561 | 442 | TITLE Mod file for component: Component(id=nax__sh0 type=ionChannelHH)
COMMENT
This NEURON file has been generated by org.neuroml.export (see https://github.com/NeuroML/org.neuroml.export)
org.neuroml.export v1.5.3
org.neuroml.model v1.5.3
jLEMS v0.9.9.0
ENDCOMMENT
NE... |
015ae0ffe4c1f224e744983b05e9b9499d06d22d56c3285b030421d9d1c22773 | NEURON | 16,579 | 442 | TITLE Mod file for component: Component(id=nax__sh15 type=ionChannelHH)
COMMENT
This NEURON file has been generated by org.neuroml.export (see https://github.com/NeuroML/org.neuroml.export)
org.neuroml.export v1.5.3
org.neuroml.model v1.5.3
jLEMS v0.9.9.0
ENDCOMMENT
N... |
fe793d19d66649de3378ebb93d5114fc59c27e96838eef6697d18fec7005a6af | NEURON | 16,579 | 442 | TITLE Mod file for component: Component(id=nax__sh10 type=ionChannelHH)
COMMENT
This NEURON file has been generated by org.neuroml.export (see https://github.com/NeuroML/org.neuroml.export)
org.neuroml.export v1.5.3
org.neuroml.model v1.5.3
jLEMS v0.9.9.0
ENDCOMMENT
N... |
1198e1faf753a8cb381f861745cbb53c20df1dae465ae81797b0b0e255d3b7fa | NEURON | 19,194 | 644 | /*--------------------------------------------------------------------
06/16
Jessica Gaines and Katharine Polasek
04/15
Lane Heyboer
Julia Slopsema
02/02
Cameron C. McIntyre
SIMULATION OF PNS MYELINATED SENSORY AXON
This model is described in detail in:
Gaines JS, Finn KE, Slopsema JP, Heyboer LA,... |
8bcf925a5850c6dbf99c0f9ca3612aca61de33d43d7826c61123f04a5c7f98ea | NEURON | 20,293 | 515 | TITLE Mod file for component: Component(id=Navapicalp type=ionChannelHH)
COMMENT
This NEURON file has been generated by org.neuroml.export (see https://github.com/NeuroML/org.neuroml.export)
org.neuroml.export v1.5.3
org.neuroml.model v1.5.3
jLEMS v0.9.9.0
ENDCOMMENT
... |
3ad413c10916d8eec9792f11d32483d34aa043fec025a5630b0b39a0a64b6a87 | NEURON | 20,375 | 673 | // NTC cleaned up slightly
//load_file("nrngui.hoc") // NTC load the hoc standard run and GUI libraries here
/*--------------------------------------------------------------------
06/16
Jessica Gaines and Katharine Polasek
04/15
Lane Heyboer
Julia Slopsema
02/02
Cameron C. McIntyre
SIMULATION OF P... |
1a12292c4561163a5eca0a718cbc54ded1a5fc04257a4ceb442310c02281f810 | NEURON | 20,664 | 523 | TITLE Mod file for component: Component(id=Navp type=ionChannelHH)
COMMENT
This NEURON file has been generated by org.neuroml.export (see https://github.com/NeuroML/org.neuroml.export)
org.neuroml.export v1.5.3
org.neuroml.model v1.5.3
jLEMS v0.9.9.0
ENDCOMMENT
NEURON... |
d0f38146d9b8113ee5da497d569d6cfcc44f1dd605db1962305ffbb781a94a0b | NEURON | 45,259 | 1,072 | TITLE Mod file for component: Component(id=Golgi_KAHP type=ionChannelKS)
COMMENT
This NEURON file has been generated by org.neuroml.export (see https://github.com/NeuroML/org.neuroml.export)
org.neuroml.export v1.5.3
org.neuroml.model v1.5.3
jLEMS v0.9.9.0
ENDCOMMENT
... |
1ad156f2f124ba9db5b53bef43af9fc911f89b8f36f784537e88d4217d8ade18 | NEURON | 45,286 | 1,074 | TITLE Mod file for component: Component(id=Golgi_KAHP type=ionChannelKS)
COMMENT
This NEURON file has been generated by org.neuroml.export (see https://github.com/NeuroML/org.neuroml.export)
org.neuroml.export v1.5.3
org.neuroml.model v1.5.3
jLEMS v0.9.9.0
ENDCOMMENT
... |
aae11ebc75fae9f09e9437219980c2247ec0f50540e5e42eafb1cd01e33905c3 | NEURON | 63,477 | 1,535 | // Cell: bAC217_L23_BP_4652c9a7e1_0_0
/*
{
"id" : "bAC217_L23_BP_4652c9a7e1_0_0",
"sections" : [ {
"name" : "soma_0",
"id" : "soma_0",
"points3d" : [ "-0.559629, -8.92861, -0.706689, 1.8952", "-0.520561, -8.09769, -0.641537, 3.08207", "-0.481493, -7.26678, -0.576385, 4.07229", "-0.442425, -6.43586, -0.5... |
e899abe1b1b210b7f3435abb3615dfb1e8d7fdb853a6fbbf884a1dfdfd65f36a | NEURON | 63,482 | 1,804 | proc celldef() {
topol()
subsets()
geom()
biophys()
geom_nseg()
}
create dend[99], soma[3], axon[7]
proc topol() { local i
connect dend[1](0), soma[1](1)
for i = 2, 14 connect dend[i](0), dend[i-1](1)
connect dend[15](0), dend[13](1)
for i = 16, 17 connect dend[i](0), dend[15](1)
co... |
2c99afa45c2f14bc1a0c874597f0cd868390eb6bdd82cb28e5b9982425e6a98b | NEURON | 63,517 | 1,539 | // Cell: bAC217_L23_BP_472b717f1f_0_0
/*
{
"id" : "bAC217_L23_BP_472b717f1f_0_0",
"sections" : [ {
"name" : "soma_0",
"id" : "soma_0",
"points3d" : [ "-0.559629, -8.92861, -0.706689, 1.8952", "-0.520561, -8.09769, -0.641537, 3.08207", "-0.481493, -7.26678, -0.576385, 4.07229", "-0.442425, -6.43586, -0.5... |
a003bb4e904aaa68b434190317cffb816a809a60d36d432d5b48892c6f51a2a7 | NEURON | 63,554 | 1,541 | // Cell: bAC217_L23_BP_2004171a4c_0_0
/*
{
"id" : "bAC217_L23_BP_2004171a4c_0_0",
"sections" : [ {
"name" : "soma_0",
"id" : "soma_0",
"points3d" : [ "-0.559629, -8.92861, -0.706689, 1.8952", "-0.520561, -8.09769, -0.641537, 3.08207", "-0.481493, -7.26678, -0.576385, 4.07229", "-0.442425, -6.43586, -0.5... |
06682dfd152ecf8b681d85a57183cd2c7e2c47245713784952985b6813c55588 | NEURON | 63,589 | 1,539 | // Cell: bAC217_L23_BP_2f6bdee09f_0_0
/*
{
"id" : "bAC217_L23_BP_2f6bdee09f_0_0",
"sections" : [ {
"name" : "soma_0",
"id" : "soma_0",
"points3d" : [ "-0.559629, -8.92861, -0.706689, 1.8952", "-0.520561, -8.09769, -0.641537, 3.08207", "-0.481493, -7.26678, -0.576385, 4.07229", "-0.442425, -6.43586, -0.5... |
c5c3f02b494d9d6fda806ccbbabb5f89c685f751a095d6ff94ba726fc2415142 | NEURON | 63,633 | 1,539 | // Cell: bAC217_L23_BP_ca85cefc69_0_0
/*
{
"id" : "bAC217_L23_BP_ca85cefc69_0_0",
"sections" : [ {
"name" : "soma_0",
"id" : "soma_0",
"points3d" : [ "-0.559629, -8.92861, -0.706689, 1.8952", "-0.520561, -8.09769, -0.641537, 3.08207", "-0.481493, -7.26678, -0.576385, 4.07229", "-0.442425, -6.43586, -0.5... |
978c9f8de25c4617be6bbb835a7643c8ae8a04e914aef9f6e858d0a1eca60f76 | NEURON | 72,372 | 1,757 | TITLE Mod file for component: Component(id=NaV type=ionChannelKS)
COMMENT
This NEURON file has been generated by org.neuroml.export (see https://github.com/NeuroML/org.neuroml.export)
org.neuroml.export v1.5.3
org.neuroml.model v1.5.3
jLEMS v0.9.9.0
ENDCOMMENT
NEURON ... |
f21b60a0105d074bedc972f0d4fdc82a46694390bc5cee0893c607e23b7d44c5 | NEURON | 92,642 | 2,521 | proc celldef() {
topol()
subsets()
geom()
biophys()
geom_nseg()
}
create soma[6], dend[41], axon[16]
proc topol() { local i
connect soma[1](0), soma(0.5)
for i = 2, 3 connect soma[i](0), soma[1](1)
for i = 4, 5 connect soma[i](0), soma[3](1)
connect dend(0), soma[2](1)
for i = 1, 2 ... |
d298dab3acaf4a41e68ee079e956042feb6028b6e9fca74bf8a367483379b6ae | NEURON | 94,949 | 2,654 | proc celldef() {
topol()
subsets()
geom()
biophys()
geom_nseg()
}
create soma[6], dend[117], axon[7]
proc topol() { local i
for i = 1, 2 connect soma[i](0), soma(0.5)
for i = 3, 4 connect soma[i](0), soma[2](1)
connect soma[5](0), soma(0.5)
connect dend(0), soma[3](1)
for i = 1, 3 c... |
55462acfbd44e7f3031df5f30458e156b2a47f17a59e433a8d545edccb835935 | NEURON | 162,212 | 3,281 | // Cell: bAC217_L23_BTC_65225ca4f8_0_0
/*
{
"id" : "bAC217_L23_BTC_65225ca4f8_0_0",
"sections" : [ {
"name" : "soma_0",
"id" : "soma_0",
"points3d" : [ "0.414762, -11.6197, -1.62187, 2.64004", "0.384603, -10.5465, -1.46411, 4.71198", "0.354444, -9.47334, -1.30636, 5.74801", "0.324285, -8.40018, -1.1486,... |
48f497eb6d15512a1f4703f1263868af95313e80b293c7acef53c904ada0b7ef | NEURON | 193,235 | 3,551 | // Cell: bAC217_L23_LBC_4738b5c12c_0_0
/*
{
"id" : "bAC217_L23_LBC_4738b5c12c_0_0",
"sections" : [ {
"name" : "soma_0",
"id" : "soma_0",
"points3d" : [ "-3.51694, 11.0104, -0.0819092, 3.19551", "-3.15841, 9.8621, -0.0768064, 5.3635", "-2.79987, 8.71381, -0.0717036, 5.2385", "-2.44133, 7.56552, -0.066600... |
17c99d56c6070a4fb66b48ca05cadc145cadb952add634cf8a2d7a24f1e36986 | NEURON | 200,000 | 1,937 | // Cell: bAC217_L23_MC_31f333a601_0_0
/*
{
"id" : "bAC217_L23_MC_31f333a601_0_0",
"sections" : [ {
"name" : "soma_0",
"id" : "soma_0",
"points3d" : [ "-0.75485, -11.7762, 0.0, 2.18488", "-0.657297, -10.5155, 0.0, 3.53249", "-0.559744, -9.25485, 0.0, 3.81193", "-0.462191, -7.99416, 0.0, 4.14058", "-0.364... |
1aaeec4a4bf9f44628d451cc126a26287ff9b2472f9a909c9487707b49680a5f | NEURON | 200,000 | 2,668 | // Cell: bAC217_L23_LBC_c5ee2b20c2_0_0
/*
{
"id" : "bAC217_L23_LBC_c5ee2b20c2_0_0",
"sections" : [ {
"name" : "soma_0",
"id" : "soma_0",
"points3d" : [ "-2.94076, -9.8712, -1.65398, 2.77643", "-2.68752, -8.89837, -1.49144, 3.78775", "-2.43427, -7.92553, -1.32889, 4.91862", "-2.18103, -6.95269, -1.16635,... |
44b8b3cd4ab516810dc667f7739c9a5ab477f3dc5c2350fdcb9e3d76a1490924 | NEURON | 200,000 | 5,958 | // Cell: purk2
/*
{
"id" : "purk2",
"sections" : [ {
"name" : "soma",
"id" : "soma",
"points3d" : [ "0.0, 0.0, 0.0, 29.8", "0.0, 29.8, 0.0, 29.8" ],
"comments" : "Section in NeuroML is spherical, so using cylindrical section along Y axis for NEURON\n"
}, {
"name" : "dend_0",
"id" : "dend_0... |
4a7463cff1be82dafc29759ee166a7bf9932ff081ff05c1d59d55a03833e02c2 | NEURON | 200,000 | 1,700 | // Cell: bAC217_L23_LBC_72e65525d3_0_0
/*
{
"id" : "bAC217_L23_LBC_72e65525d3_0_0",
"sections" : [ {
"name" : "soma_0",
"id" : "soma_0",
"points3d" : [ "-4.57692, -12.317, 0.00224913, 3.04291", "-4.1223, -11.0092, 0.00199417, 5.29598", "-3.66768, -9.70142, 0.00173921, 6.96143", "-3.21306, -8.39361, 0.00... |
4d0c89b6bdd56bde3c88fbc6b244f9fb22a8c219467dafc2995569b0a33387f3 | NEURON | 200,000 | 1,719 | // Cell: bAC217_L23_MC_464f0bd828_0_0
/*
{
"id" : "bAC217_L23_MC_464f0bd828_0_0",
"sections" : [ {
"name" : "soma_0",
"id" : "soma_0",
"points3d" : [ "-6.45107, -7.20494, 0.34076, 4.11613", "-5.802, -6.55166, 0.311223, 7.24085", "-5.15293, -5.89837, 0.281687, 9.81042", "-4.50386, -5.24508, 0.25215, 11.0... |
512d77e6f6b03a768916778228f425040180e3bf40ad8c1a1368e9573d99c6b7 | NEURON | 200,000 | 3,090 | // Cell: bAC217_L23_LBC_aebca8458d_0_0
/*
{
"id" : "bAC217_L23_LBC_aebca8458d_0_0",
"sections" : [ {
"name" : "soma_0",
"id" : "soma_0",
"points3d" : [ "1.5447, -11.4608, -0.121548, 4.55716", "1.45806, -10.4101, -0.101251, 5.33345", "1.37142, -9.3594, -0.0809547, 6.71804", "1.28478, -8.3087, -0.0606581,... |
55c8ffbfdae2c7aa259596b65f48f39d198a957b7466db649aec487a1f28b32c | NEURON | 200,000 | 3,510 | // Cell: bAC217_L23_MC_1490f15199_0_0
/*
{
"id" : "bAC217_L23_MC_1490f15199_0_0",
"sections" : [ {
"name" : "soma_0",
"id" : "soma_0",
"points3d" : [ "-4.17522, 8.15233, 1.17351, 3.49784", "-3.71942, 7.18524, 1.0179, 6.02026", "-3.26362, 6.21815, 0.862285, 9.3846", "-2.80781, 5.25106, 0.706673, 11.7549"... |
578f5d9544b588d68b4cfc04cd72f33ab4817de5af30e018b1093f7a8905f82d | NEURON | 200,000 | 2,530 | // Cell: CA1
/*
{
"id" : "CA1",
"sections" : [ {
"name" : "soma_0",
"id" : "soma_0",
"points3d" : [ "0.0, 0.0, 0.01, 7.491", "0.0, 0.0, 7.501, 7.491" ]
}, {
"name" : "user5_0",
"id" : "user5_0",
"points3d" : [ "0.0, 0.0, 7.501, 7.491", "3.71, 20.98, 7.121, 4.96", "5.55, 21.23, 7.561, 4.51"... |
5927f6ec424784d44d6810b9c9d65255df94f2ba1a66050c823b8c0ef3323c3e | NEURON | 200,000 | 2,540 | // Cell: bAC217_L23_NBC_421c200e4e_0_0
/*
{
"id" : "bAC217_L23_NBC_421c200e4e_0_0",
"sections" : [ {
"name" : "soma_0",
"id" : "soma_0",
"points3d" : [ "-4.72306, 5.30436, 4.20388, 2.54287", "-4.25223, 4.78627, 3.78879, 4.68725", "-3.7814, 4.26817, 3.37371, 6.22673", "-3.31057, 3.75008, 2.95862, 7.64701... |
599bfebf68a8647908571715deb99c900fce985af487fb1c7f2e984d3a87459a | NEURON | 200,000 | 3,191 | // Cell: bAC217_L23_DBC_393cc5cca5_0_0
/*
{
"id" : "bAC217_L23_DBC_393cc5cca5_0_0",
"sections" : [ {
"name" : "soma_0",
"id" : "soma_0",
"points3d" : [ "-0.250943, 5.15502, -0.455322, 3.76408", "-0.287266, 4.50998, -0.403251, 6.96761", "-0.32359, 3.86493, -0.351181, 8.3161", "-0.359913, 3.21989, -0.2991... |
6bf33c06711b0c4351954a478898018b681ccb8aac63dfa6bf6230460ade520c | NEURON | 200,000 | 3,094 | // Cell: bAC217_L23_MC_44b474bb8f_0_0
/*
{
"id" : "bAC217_L23_MC_44b474bb8f_0_0",
"sections" : [ {
"name" : "soma_0",
"id" : "soma_0",
"points3d" : [ "2.20735, 8.20037, -0.145218, 3.29125", "2.02164, 7.42212, -0.116403, 5.96832", "1.83593, 6.64387, -0.0875877, 7.36282", "1.65022, 5.86562, -0.0587725, 8.... |
89b1d016d2fdd7cccd71ee219915f134fb323baa3642c67cdff124a0480fe2e0 | NEURON | 200,000 | 2,978 | // Cell: bAC217_L23_DBC_3f985b6ce2_0_0
/*
{
"id" : "bAC217_L23_DBC_3f985b6ce2_0_0",
"sections" : [ {
"name" : "soma_0",
"id" : "soma_0",
"points3d" : [ "0.667779, -8.61462, 0.0, 1.82374", "0.649013, -7.62864, 0.0, 3.14268", "0.630248, -6.64266, 0.0, 3.90944", "0.611482, -5.65668, 0.0, 4.60231", "0.59271... |
8b886f9e8c17b5631bbee4597d7435e980c769ae559e0015ef2928debdcc2ede | NEURON | 200,000 | 3,602 | // Cell: bAC217_L23_BTC_e5d9eb2ec3_0_0
/*
{
"id" : "bAC217_L23_BTC_e5d9eb2ec3_0_0",
"sections" : [ {
"name" : "soma_0",
"id" : "soma_0",
"points3d" : [ "1.10599, -10.005, -3.63045, 2.05199", "1.00994, -8.98941, -3.26388, 3.40229", "0.913884, -7.97383, -2.89732, 4.43836", "0.817831, -6.95825, -2.53075, 5... |
9b9337299c100a4dcb42f26283f96745bc12347121cec503843660dddcc92675 | NEURON | 200,000 | 549 | // Cell: bAC217_L23_DBC_d6bea44209_0_0
/*
{
"id" : "bAC217_L23_DBC_d6bea44209_0_0",
"sections" : [ {
"name" : "soma_0",
"id" : "soma_0",
"points3d" : [ "2.36129, -7.58075, 0.00144685, 3.22785", "2.18013, -6.85906, 0.00129054, 6.03886", "1.99896, -6.13737, 0.00113423, 7.42316", "1.81779, -5.41568, 9.7792... |
9d1f4a9ec3e4dc8cdcb2bba52842bcb8912a104b6f99bffb88ba25c2d1785d5b | NEURON | 200,000 | 3,251 | // Cell: bAC217_L23_DBC_e5ab405051_0_0
/*
{
"id" : "bAC217_L23_DBC_e5ab405051_0_0",
"sections" : [ {
"name" : "soma_0",
"id" : "soma_0",
"points3d" : [ "-0.900775, -9.8088, 0.590543, 2.2315", "-0.795054, -8.89395, 0.538155, 2.59468", "-0.689333, -7.97909, 0.485767, 3.40562", "-0.583612, -7.06424, 0.4333... |
a42193967b031f571772749a602a09577abf16d494fc59e98a55fe46524b3f30 | NEURON | 200,000 | 1,796 | // Cell: Golgi_040408_C1
/*
{
"id" : "Golgi_040408_C1",
"sections" : [ {
"name" : "Soma",
"id" : "Soma",
"points3d" : [ "0.0, 0.0, 0.0, 27.0", "0.0, 27.0, 0.0, 27.0" ],
"comments" : "Section in NeuroML is spherical, so using cylindrical section along Y axis for NEURON\n"
}, {
"name" : "SecAxon... |
b0e0f10b7b738319a7b662bdd0c60739c2fd5a425dcad9175900a2e406a14a84 | NEURON | 200,000 | 1,765 | // Cell: L5PC
/*
{
"id" : "L5PC",
"sections" : [ {
"name" : "soma_0",
"id" : "soma_0",
"points3d" : [ "34.1634, 17.6215, -50.25, 3.80039", "35.3196, 17.6937, -50.25, 6.44373", "36.4758, 17.766, -50.25, 9.60449", "37.632, 17.8382, -50.25, 12.1828", "38.7883, 17.9104, -50.25, 14.0603", "39.9445, 17.9826, ... |
b51c4f4b1b9fdc1a84f7fd52122d04ab17b49071dc561a16fce0cfa967506043 | NEURON | 200,000 | 2,732 | // Cell: bAC217_L23_DBC_55c1d16c8c_0_0
/*
{
"id" : "bAC217_L23_DBC_55c1d16c8c_0_0",
"sections" : [ {
"name" : "soma_0",
"id" : "soma_0",
"points3d" : [ "-1.10046, -10.7769, 0.0, 1.2583", "-0.977881, -9.66658, 0.0, 1.27734", "-0.855301, -8.55625, 0.0, 1.93125", "-0.732721, -7.44592, 0.0, 2.73299", "-0.61... |
d4eaea8d081ac23aa2e54ffeb84742703a12f0e8a23a6dd8087a25dc4c084dc6 | NEURON | 200,000 | 1,177 | // Cell: bAC217_L23_BTC_d9b97f1242_0_0
/*
{
"id" : "bAC217_L23_BTC_d9b97f1242_0_0",
"sections" : [ {
"name" : "soma_0",
"id" : "soma_0",
"points3d" : [ "0.701782, -14.5938, 2.84454, 2.73269", "0.624028, -13.2198, 2.58654, 4.41229", "0.546274, -11.8458, 2.32855, 5.84991", "0.46852, -10.4718, 2.07055, 7.3... |
db2517002fa907e61c07464a34616a9b1ba0ea5f02c3e37c9352fac0dc4f9700 | NEURON | 200,000 | 3,202 | // Cell: bAC217_L23_BTC_e561810e0d_0_0
/*
{
"id" : "bAC217_L23_BTC_e561810e0d_0_0",
"sections" : [ {
"name" : "soma_0",
"id" : "soma_0",
"points3d" : [ "-0.0163373, -10.5648, -1.00744, 3.15858", "-0.0180751, -9.53443, -0.909395, 5.5831", "-0.019813, -8.50408, -0.811349, 6.95964", "-0.0215508, -7.47373, ... |
de2c668891c6aefd1e54f95cdd2d1755b226ebd5f630f451cd6ed1da8400a30b | NEURON | 200,000 | 2,809 | // Cell: bAC217_L23_MC_40be3bf0e8_0_0
/*
{
"id" : "bAC217_L23_MC_40be3bf0e8_0_0",
"sections" : [ {
"name" : "soma_0",
"id" : "soma_0",
"points3d" : [ "0.725337, -8.55593, -0.229478, 3.8774", "0.647393, -7.79641, -0.208964, 4.51671", "0.569448, -7.03689, -0.18845, 5.69414", "0.491504, -6.27738, -0.167936... |
f966682ddb2372bf86152a10954821208c68777818d3a386d3a17564765c51b9 | NEURON | 200,000 | 3,097 | // Cell: bAC217_L23_LBC_361cffb4c6_0_0
/*
{
"id" : "bAC217_L23_LBC_361cffb4c6_0_0",
"sections" : [ {
"name" : "soma_0",
"id" : "soma_0",
"points3d" : [ "-2.14355, -7.38643, 0.0, 3.00626", "-1.94813, -6.57976, 0.0, 3.91171", "-1.75271, -5.7731, 0.0, 5.48682", "-1.55728, -4.96644, 0.0, 7.76121", "-1.36186... |
fb1a9dd28fe08b8ce993464b384d6646d5542c6e8975db9c311a94fbeaafbcaf | NEURON | 200,000 | 2,108 | // Cell: bAC217_L23_BTC_9ad0430657_0_0
/*
{
"id" : "bAC217_L23_BTC_9ad0430657_0_0",
"sections" : [ {
"name" : "soma_0",
"id" : "soma_0",
"points3d" : [ "0.636547, -11.2268, 0.0, 2.0961", "0.598333, -10.0461, 0.0, 3.03421", "0.560118, -8.86534, 0.0, 4.26504", "0.521904, -7.68461, 0.0, 5.45891", "0.483689... |
5614aa27bb7cf43240ed978a3c9f618a98c00acff48a1d60ab191f5991db8dda | Perl | 116 | 8 | #!/usr/bin/perl
while (<>) {
chomp;
@c = split;
$c[5] = -$c[5] if ($#c >= 5);
print join(" ", @c). "\n";
}
|
e9e82c3c58db84ae781b8126209f0a274f1d5ea36a935299437ce3e93776746d | Perl | 168 | 9 | #!/usr/bin/env perl
# This script takes a VCF on STDIN
# and outputs a TSV for Selene to STDOUT
while (<>) {
@f = split;
print join("\t", @f[0,1,3,4])."\n"
}
|
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