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c86144a30fcda8259bb099d6c5a00900c398d756deba79e51bbdd3c72042ef62
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#!/usr/bin/env python3 # Copyright (c) Meta Platforms, Inc. and affiliates. # # This source code is licensed under the MIT license found in the # LICENSE file in the root directory of this source tree. # pyre-strict from collections.abc import Sized from contextlib import ExitStack from itertools import product from ...
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"""Utility functions for analyzing the sampling paradigm.""" import itertools import multiprocessing import os import warnings from collections import OrderedDict from functools import partial import mne import numpy as np import pandas as pd import scipy import scipy.signal import scipy.stats from scipy.spatial.dista...
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# Copyright (c) MONAI Consortium # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # http://www.apache.org/licenses/LICENSE-2.0 # Unless required by applicable law or agreed to in writing, so...
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"""Test data_manager.managers module functionality. This file tests the core functionality of the excluded_fields_for_evaluation feature that optimizes task API performance by excluding expensive fields. """ import json from unittest.mock import Mock, patch from data_manager.prepare_params import ConjunctionEnum, Fi...
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# real non truncating division (same behaviour as in python 3) from __future__ import division import random as rd import networkx as nx import numpy as np from numpy import linalg as la from sklearn import cluster as cl from MolRep.Interactions.link_models.CFLP.pysbm import additional_types from .exceptions import N...
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import matplotlib.pyplot as plt # To plot from scipy.optimize import curve_fit from pylab import * import numpy as np import random import math import time import os import glob set_sigma_errors = False #True data_sigma_errors = True # False thismaxfev = 10000 def rmsd(x,y): Nx = len(x) N...
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""" Tabular datatype """ import abc import binascii import csv import logging import os import re import shutil import subprocess import tempfile from json import dumps from typing import ( cast, Optional, Union, ) import pysam from markupsafe import escape from galaxy import util from galaxy.datatypes i...
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""" Interval datatypes """ import logging import sys import tempfile from typing import ( Optional, Union, ) from urllib.parse import quote_plus import pysam from bx.intervals.io import ( GenomicIntervalReader, ParseError, ) from galaxy import util from galaxy.datatypes import metadata from galaxy.da...
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import unittest as ut import networkx as nx import numpy as np import six import pysbm.UnitTests.test_partition as test_sbmpartition from pysbm.sbm.nxpartitiongraphbased import NxHierarchicalPartition from pysbm.sbm.nxpartitiongraphbased import NxPartitionGraphBased from pysbm.sbm.nxpartitiongraphbased import NxParti...
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from __future__ import annotations from collections import defaultdict, deque from collections.abc import Iterator from contextlib import contextmanager from dataclasses import dataclass, field, replace from math import prod from typing import Any, Callable, Optional import torch import torch.nn as nn from torch.over...
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# -*- coding: utf-8 -*- """ Created on Fri Feb 7 14:15:34 2020 @author: Maxsc """ import os import re import sys import glob import copy import string import numpy as np import pandas as pd from matplotlib import pyplot as plt from matplotlib import animation from matplotlib.gridspec import GridSpec from contextlib i...
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""" Shortest path algorithms for weighted graphs. """ from collections import deque from heapq import heappop, heappush from itertools import count, islice import networkx as nx from networkx.algorithms.shortest_paths.generic import _build_paths_from_predecessors __all__ = [ "dijkstra_path", "dijkstra_path_l...
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import pytest from nl_expr.expressions import Symbol from nl_expr.exceptions import UnexpectedTokenError from ...frontend.datalog.standard_syntax import parser def test_interactive_empty_input(): res = parser('', interactive=True) expected = {'Signs': {'values': {'@', '∃', '('}}, 'Numbers': {'values': {'<int...
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"""This file and its contents are licensed under the Apache License 2.0. Please see the included NOTICE for copyright information and LICENSE for a copy of the license.""" import json import logging from typing import Any, Mapping, Optional from annoying.fields import AutoOneToOneField from core.current_request impor...
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# Licensed to the Apache Software Foundation (ASF) under one # or more contributor license agreements. See the NOTICE file # distributed with this work for additional information # regarding copyright ownership. The ASF licenses this file # to you under the Apache License, Version 2.0 (the # "License"); you may not u...
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# Copyright (c) MONAI Consortium # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # http://www.apache.org/licenses/LICENSE-2.0 # Unless required by applicable law or agreed to in writing, so...
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#!/usr/bin/env python3 # Copyright (c) Meta Platforms, Inc. and affiliates. # # This source code is licensed under the MIT license found in the # LICENSE file in the root directory of this source tree. # pyre-strict import json import logging import warnings from collections.abc import Callable, Generator, Sequence f...
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# Licensed to the Apache Software Foundation (ASF) under one # or more contributor license agreements. See the NOTICE file # distributed with this work for additional information # regarding copyright ownership. The ASF licenses this file # to you under the Apache License, Version 2.0 (the # "License"); you may not u...
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import pytest from ..interactive_parsing import LarkCompleter from nl_expr.expressions import Symbol from nl_expr.exceptions import UnexpectedTokenError from ...frontend.datalog.standard_syntax import COMPILED_GRAMMAR def test_interactive_empty_input(): completer = LarkCompleter(COMPILED_GRAMMAR) res = compl...
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import inspect import subprocess import sys import numpy as np import pytest import torch import torch.nn as nn import torch.nn.functional as F from spikingjelly.activation_based import ( ann2snn, base, functional, layer, neuron, ) from spikingjelly.activation_based.ann2snn import ( Conversion...
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""" objectstore package, abstraction for storing blobs of data for use in Galaxy. all providers ensure that data can be accessed on the filesystem for running tools """ import abc import hashlib import logging import os import random import shutil import threading import time from collections import OrderedDict from ...
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# Copyright (c) MONAI Consortium # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # http://www.apache.org/licenses/LICENSE-2.0 # Unless required by applicable law or agreed to in writing, so...
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# Licensed to the Apache Software Foundation (ASF) under one # or more contributor license agreements. See the NOTICE file # distributed with this work for additional information # regarding copyright ownership. The ASF licenses this file # to you under the Apache License, Version 2.0 (the # "License"); you may not u...
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""" Copyright © 2023 Howard Hughes Medical Institute, Authored by Carsen Stringer and Marius Pachitariu. """ import os from cellpose import io, metrics, transforms, denoise, models, plot import torch import numpy as np import matplotlib.pyplot as plt from pathlib import Path import cv2 from tqdm import tqdm from fig_...
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#!/usr/bin/env python """ Easy Install ------------ A tool for doing automatic download/extract/build of distutils-based Python packages. For detailed documentation, see the accompanying EasyInstall.txt file, or visit the `EasyInstall home page`__. __ https://setuptools.readthedocs.io/en/latest/easy_install.html ""...
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""" Partition of NetworkX Graphs based on internal representation as NetworkX Graph""" import random as rd import networkx as nx import numpy as np # from pysbm import additional_types from MolRep.Interactions.link_models.CFLP.pysbm import additional_types from .partition import Partition from .exceptions import NoF...
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import logging import socket import sqlite3 from datetime import timedelta from typing import ( Optional, ) from sqlalchemy import ( and_, delete, false, func, insert, not_, or_, select, text, ) from sqlalchemy.exc import IntegrityError from sqlalchemy.orm import joinedload imp...
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import sys from pathlib import Path from scipy.stats import wilcoxon import fastremap from scipy.ndimage import gaussian_filter1d import matplotlib.pyplot as plt import numpy as np from cellpose import io, utils, metrics, denoise, transforms import matplotlib import matplotlib.gridspec import matplotlib.transforms as...
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#!/usr/bin/env python3 # Copyright (c) Meta Platforms, Inc. and affiliates. # # This source code is licensed under the MIT license found in the # LICENSE file in the root directory of this source tree. # pyre-strict import logging from typing import cast from unittest import mock from unittest.mock import MagicMock, ...
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# Licensed to the Apache Software Foundation (ASF) under one # or more contributor license agreements. See the NOTICE file # distributed with this work for additional information # regarding copyright ownership. The ASF licenses this file # to you under the Apache License, Version 2.0 (the # "License"); you may not u...
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# Licensed to the Apache Software Foundation (ASF) under one # or more contributor license agreements. See the NOTICE file # distributed with this work for additional information # regarding copyright ownership. The ASF licenses this file # to you under the Apache License, Version 2.0 (the # "License"); you may not u...
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from inspect import signature from itertools import product from operator import eq import logging import pytest from nl_expr.config import config from nl_core.datalog import Conjunction, Implication, Negation from nl_expr.expression_pattern_matching import add_match from nl_expr.expression_walker import ( Expres...
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from __future__ import division, print_function from fanc.config import config import matplotlib as mpl from matplotlib.ticker import NullLocator, MaxNLocator from fanc import load from genomic_regions import GenomicRegion, GenomicDataFrame, merge_overlapping_regions from fanc.plotting.base_plotter import BasePlotter1D...
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import array import atexit import json import os import pathlib import sys import pickle import shutil import tempfile from contextlib import contextmanager from pickle import PicklingError from zipfile import ZipFile import numpy as np import pytest from numpy.testing import assert_array_almost_equal, assert_array_eq...
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""" Copyright © 2025 Howard Hughes Medical Institute, Authored by Carsen Stringer, Michael Rariden and Marius Pachitariu. """ import logging import sys, os, pathlib, warnings, datetime, time, copy from qtpy import QtGui, QtCore from superqt import QRangeSlider, QCollapsible from qtpy.QtWidgets import QScrollArea, QMa...
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# Copyright (C) CVAT.ai Corporation # # SPDX-License-Identifier: MIT import json from collections.abc import Callable, Collection, Iterable from copy import deepcopy from functools import partial from http import HTTPStatus from itertools import groupby, product from typing import Any import pytest from cvat_sdk.api_...
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import itertools from typing import AbstractSet, Callable, Tuple import numpy as np import pandas as pd import pytest from nl_expr.exceptions import ( NegativeFormulaNotNamedRelationException, NegativeFormulaNotSafeRangeException, NeuroLangException, SymbolNotFoundError, UnboundVariablesError, ...
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# -*- coding: utf-8 -*- """ StitchingWobbly =============== Wobbly stitching module handles the alginment of large volumetric data sets. The module alings stacks allowing them to wobble around a wobble axis, i.e. due to oscillatory movements during image aquisition. """ __author__ = 'Christoph Kirst <christoph.ki...
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# Licensed to the Apache Software Foundation (ASF) under one # or more contributor license agreements. See the NOTICE file # distributed with this work for additional information # regarding copyright ownership. The ASF licenses this file # to you under the Apache License, Version 2.0 (the # "License"); you may not u...
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import binascii import hashlib import itertools import math import operator import re from functools import reduce from typing import Any import numpy as np from numcodecs.compat import ensure_bytes from zarr._storage.store import _prefix_to_attrs_key, assert_zarr_v3_api_available from zarr.attrs import Attributes fr...
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import logging import operator from collections import Counter from functools import reduce from itertools import chain, combinations, product from typing import AbstractSet import numpy as np from .. import relational_algebra_provenance as rap from nl_expr.config import config from ..datalog.expression_processing im...
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# Notes about NetworkX namespace objects set up here: # # nx.utils.backends.backends: # dict keyed by backend name to the backend entry point object. # Filled using ``_get_backends("networkx.backends")`` during import of this module. # # nx.utils.backends.backend_info: # dict keyed by backend name to the metadata...
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#!/usr/bin/env python3 # Copyright (c) Meta Platforms, Inc. and affiliates. # # This source code is licensed under the MIT license found in the # LICENSE file in the root directory of this source tree. # pyre-strict from copy import deepcopy from typing import cast from unittest.mock import MagicMock, Mock, patch im...
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# -*- coding: utf-8 -*- """ Created on Fri Sep 8 16:17:25 2017 @author: Max """ from .tools.neuriteconstructor import neuriteConstructor from .tools.thresholdneuron import ThresholdNeuron from .tools.analyzers import Analyzers from .tools.dataframecleanup import DataframeCleanup from .tools.sortpoints import sortPoi...
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#!/usr/bin/env python3 # Copyright (c) Meta Platforms, Inc. and affiliates. # # This source code is licensed under the MIT license found in the # LICENSE file in the root directory of this source tree. # pyre-strict from __future__ import annotations from collections.abc import Callable, Generator, Iterable, Mapping...
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"""This module contains storage classes for use with Zarr arrays and groups. Note that any object implementing the :class:`MutableMapping` interface from the :mod:`collections` module in the Python standard library can be used as a Zarr array store, as long as it accepts string (str) keys and bytes values. In additio...
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# -*- coding: utf-8 -*- """ Created on Fri Sep 8 16:17:25 2017 @author: Max """ from .tools.neuriteconstructor import neuriteConstructor from .tools.thresholdneuron import ThresholdNeuron from .tools.analyzers import Analyzers from .tools.dataframecleanup import DataframeCleanup from .tools.sortpoints imp...
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import math import numbers import torch import torch.nn as nn import torch.nn.functional as F from . import quantize def heaviside(x: torch.Tensor): r""" **API Language** - :ref:`中文 <heaviside-cn>` | :ref:`English <heaviside-en>` ---- .. _heaviside-cn: * **中文** heaviside阶跃函数，定义为 .. ...
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import matplotlib import matplotlib.pyplot as plt import matplotlib.cm as cm from matplotlib import gridspec import parmap import numpy as np import os import glob2 import warnings import pickle import torch import pickle as pk import pycorrelate import thundersvm import sklearn from sklearn.preprocessing import Stand...
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# Copyright (c) 2017, NVIDIA CORPORATION. All rights reserved. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions # are met: # * Redistributions of source code must retain the above copyright # notice, this list of conditio...
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# Licensed to the Apache Software Foundation (ASF) under one # or more contributor license agreements. See the NOTICE file # distributed with this work for additional information # regarding copyright ownership. The ASF licenses this file # to you under the Apache License, Version 2.0 (the # "License"); you may not u...
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#!/usr/bin/env python3 # Copyright (c) Meta Platforms, Inc. and affiliates. # # This source code is licensed under the MIT license found in the # LICENSE file in the root directory of this source tree. # pyre-strict import dataclasses import inspect import math import warnings from contextlib import ExitStack from co...
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# Licensed to the Apache Software Foundation (ASF) under one # or more contributor license agreements. See the NOTICE file # distributed with this work for additional information # regarding copyright ownership. The ASF licenses this file # to you under the Apache License, Version 2.0 (the # "License"); you may not u...
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#emacs: -*- mode: python; py-indent-offset: 4; indent-tabs-mode: nil -*- #ex: set sts=4 ts=4 sw=4 et: ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ## # # See the COPYING file distributed along with the smile package for the # copyright and license terms. # ### ### ### ### ### ### ### ...
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""" ********** Matplotlib ********** Draw networks with matplotlib. Examples -------- >>> G = nx.complete_graph(5) >>> nx.draw(G) See Also -------- - :doc:`matplotlib <matplotlib:index>` - :func:`matplotlib.pyplot.scatter` - :obj:`matplotlib.patches.FancyArrowPatch` """ import collections import itertools import...
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# coding: utf-8 """ Package resource API -------------------- A resource is a logical file contained within a package, or a logical subdirectory thereof. The package resource API expects resource names to have their path parts separated with ``/``, *not* whatever the local path separator is. Do not use os.path opera...
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__author__ = "Simon Nilsson; sronilsson@gmail.com" from simba.utils.printing import (SimbaTimer, stdout_information, stdout_success, stdout_warning) load_timer = SimbaTimer(start=True) import os.path import warnings warnings.filterwarnings("ignore", category=FutureWarning) warnings....
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#!/usr/bin/env python3 # Copyright (c) Meta Platforms, Inc. and affiliates. # # This source code is licensed under the MIT license found in the # LICENSE file in the root directory of this source tree. # pyre-strict from __future__ import annotations import itertools from collections import OrderedDict from collect...
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from __future__ import division import copy import gzip import logging import multiprocessing as mp import os import threading import uuid from abc import abstractmethod, ABCMeta from bisect import bisect_right from builtins import object from collections import defaultdict from queue import Empty from timeit import d...
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# Configuration file for the Sphinx documentation builder. # # For the full list of built-in configuration values, see the documentation: # https://www.sphinx-doc.org/en/master/usage/configuration.html # -- Project information ----------------------------------------------------- # https://www.sphinx-doc.org/en/master...
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# Copyright (c) MONAI Consortium # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # http://www.apache.org/licenses/LICENSE-2.0 # Unless required by applicable law or agreed to in writing, so...
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import hashlib import json import logging from collections.abc import Iterable from dataclasses import dataclass from datetime import ( date, datetime, ) from pathlib import Path from typing import ( Any, cast, Optional, TYPE_CHECKING, TypeVar, Union, ) import sqlalchemy from boltons.it...
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#!/usr/bin/env python3 # Copyright (c) Meta Platforms, Inc. and affiliates. # # This source code is licensed under the MIT license found in the # LICENSE file in the root directory of this source tree. # pyre-strict from __future__ import annotations import inspect import logging import warnings from collections imp...
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#!/usr/bin/env python3 # Copyright (c) Meta Platforms, Inc. and affiliates. # # This source code is licensed under the MIT license found in the # LICENSE file in the root directory of this source tree. # pyre-strict import dataclasses import json import math import os import tempfile from collections import OrderedDi...
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# Licensed to the Apache Software Foundation (ASF) under one # or more contributor license agreements. See the NOTICE file # distributed with this work for additional information # regarding copyright ownership. The ASF licenses this file # to you under the Apache License, Version 2.0 (the # "License"); you may not u...
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r""" SQUALL (Semantically controlled Query-Answerable Logical Language) parser. Translates controlled English sentences into NeuroLang logical expressions using a Lark grammar and Transformer. Uses Continuation-Passing Style (CPS) for correct quantifier scoping following Montague semantics. Supported CNL constructs -...
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# Licensed to the Apache Software Foundation (ASF) under one # or more contributor license agreements. See the NOTICE file # distributed with this work for additional information # regarding copyright ownership. The ASF licenses this file # to you under the Apache License, Version 2.0 (the # "License"); you may not u...
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# Copyright (c) MONAI Consortium # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # http://www.apache.org/licenses/LICENSE-2.0 # Unless required by applicable law or agreed to in writing, so...
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import copy from collections import namedtuple import pytest import torch import torch.nn as nn import torch.nn.functional as F try: import triton # noqa: F401 _TRITON_AVAILABLE = True except (ImportError, OSError): _TRITON_AVAILABLE = False from spikingjelly.activation_based import base, functional, n...
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import sys import pathlib import pandas as pd import matplotlib.gridspec as gridspec from matplotlib.ticker import ScalarFormatter from mpl_toolkits.axes_grid1.inset_locator import inset_axes import seaborn as sns from mayavi import mlab from pyface.api import GUI import scipy.ndimage import scipy as sp from scipy.st...
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""" """ import logging import os import warnings from bisect import bisect_right from collections import defaultdict import intervaltree import numpy as np import tables from future.utils import string_types from genomic_regions import RegionBased, GenomicRegion from .config import config from .general import Mas...
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import math import random as rd from unittest import TestCase import networkx as nx from pysbm import sbm from pysbm.sbm.nxpartitiongraphbased import NxHierarchicalPartition from pysbm.sbm.peixotos_hierarchical_sbm import DeltaModelLogLikelihoodOfHierarchicalMicrocanonicalDegreeCorrectedSbm from pysbm.sbm.peixotos_hi...
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import matplotlib import matplotlib.cm as cm from matplotlib import gridspec import parmap import numpy as np import os import matplotlib.pyplot as plt import pickle from sklearn.decomposition import PCA from scipy.spatial import ConvexHull from tqdm import trange from scipy.spatial import cKDTree import pycorrelate i...
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# Licensed to the Apache Software Foundation (ASF) under one # or more contributor license agreements. See the NOTICE file # distributed with this work for additional information # regarding copyright ownership. The ASF licenses this file # to you under the Apache License, Version 2.0 (the # "License"); you may not u...
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import matplotlib import matplotlib.cm as cm from matplotlib import gridspec import parmap import numpy as np import os import matplotlib.pyplot as plt import pickle from sklearn.decomposition import PCA import pycorrelate from scipy.spatial import ConvexHull from tqdm import trange from scipy.spatial import cKDTree ...
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#!/usr/bin/env python3 # Copyright (c) Meta Platforms, Inc. and affiliates. # # This source code is licensed under the MIT license found in the # LICENSE file in the root directory of this source tree. # pyre-strict from time import sleep from unittest.mock import MagicMock, patch import pandas as pd from ax.adapter...
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import json import logging import os import uuid from typing import ( Annotated, Any, cast, NamedTuple, Optional, TYPE_CHECKING, TypeAlias, Union, ) import yaml from gxformat2 import ( from_galaxy_native, ImportOptions, python_to_workflow, ) from gxformat2.abstract import fr...
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import atexit import os import sys import pickle import shutil import unittest from itertools import zip_longest from tempfile import mkdtemp import numpy as np import pytest from numcodecs import (BZ2, JSON, LZ4, Blosc, Categorize, Delta, FixedScaleOffset, GZip, MsgPack, Pickle, VLenArray, ...
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#!/usr/bin/env python3 # Copyright (c) Meta Platforms, Inc. and affiliates. # # This source code is licensed under the MIT license found in the # LICENSE file in the root directory of this source tree. # pyre-strict from __future__ import annotations import dataclasses import itertools from contextlib import ExitSta...
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import matplotlib import matplotlib.cm as cm from matplotlib import gridspec import parmap import numpy as np import os import matplotlib.pyplot as plt import pickle from sklearn.decomposition import PCA import pycorrelate from scipy.spatial import ConvexHull from tqdm import trange from scipy.spatial import cKDTree ...
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import matplotlib import matplotlib.cm as cm from matplotlib import gridspec import parmap import numpy as np import os import matplotlib.pyplot as plt import pickle from sklearn.decomposition import PCA import pycorrelate from scipy.spatial import ConvexHull from tqdm import trange from scipy.spatial import cKDTree ...
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import matplotlib import matplotlib.cm as cm from matplotlib import gridspec import parmap import numpy as np import os import matplotlib.pyplot as plt import pickle from sklearn.decomposition import PCA import pycorrelate from scipy.spatial import ConvexHull from tqdm import trange from scipy.spatial import cKDTree ...
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# Copyright (c) MONAI Consortium # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # http://www.apache.org/licenses/LICENSE-2.0 # Unless required by applicable law or agreed to in writing, so...
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# import matplotlib # import matplotlib.cm as cm # from matplotlib import gridspec # import parmap # import numpy as np # import os # import matplotlib.pyplot as plt # import pickle # from sklearn.decomposition import PCA # import pycorrelate # from scipy.spatial import ConvexHull # from tqdm import trange # from scip...
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# Copyright (c) MONAI Consortium # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # http://www.apache.org/licenses/LICENSE-2.0 # Unless required by applicable law or agreed to in writing, so...
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# Copyright (c) Meta Platforms, Inc. and affiliates. # # This source code is licensed under the MIT license found in the # LICENSE file in the root directory of this source tree. # pyre-strict from __future__ import annotations import logging import os import re import time from collections.abc import Callable, Iter...
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# Licensed to the Apache Software Foundation (ASF) under one # or more contributor license agreements. See the NOTICE file # distributed with this work for additional information # regarding copyright ownership. The ASF licenses this file # to you under the Apache License, Version 2.0 (the # "License"); you may not u...
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""" This module provides a number of classes for the calculation of Hi-C (and other matrices) architectural features, such as AB domains, methods for boundary/TAD identification, and lots more. The classes are built in a way, that only the first method call requesting the architectural feature will trigger the calcula...
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"""This module contains general pydantic models and common schema field annotations for them.""" import base64 from datetime import ( date, datetime, ) from enum import Enum from typing import ( Annotated, Any, Literal, Optional, TypeAlias, Union, ) from uuid import UUID from pydantic ...
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""" Support for running a tool in Galaxy via an internal job management system """ import abc import copy import datetime import errno import json import logging import os import pwd import shlex import shutil import sys import time import traceback from collections.abc import ( Callable, Iterable, ) from data...
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Python
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# -*- coding: utf-8 -*- # from matplotlib.text import Text import matplotlib.pyplot as plt from matplotlib import lines import matplotlib.transforms as mtransforms from matplotlib import ticker as mplticker from matplotlib.font_manager import FontProperties import numpy as np import pandas as pd import seaborn...
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r"""显式的神经元状态转移函数 / Explicit neuron state-transition functions. 单步函数显式接收当前输入和状态，不读取或写入 ``MemoryModule`` 的 memory。 其共同契约是： .. math:: (Y_t, V_t) = \Phi(X_t, V_{t-1}; \theta) 其中 :math:`V_t` 可以是一个或多个状态张量；具体神经元自行定义 :math:`\Phi`，不要求拆分为固定的充电、发放和复位步骤。状态生命周期由拥有它的 neuron module 管理。 多步函数接收时间优先的 ``[T, ...]`` 序列，返回输出序列和最终状态。...
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# -*- coding: utf-8 -*- """ Stitching base module for aligning and stitching data sets. The module features a plane wise alignment routine for data in which individual image stacks show oscillatory movements in itself. """ __author__ = 'Christoph Kirst <christoph.kirst.ck@gmail.com>' __license__ = 'GPLv3 - GNU Ge...
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#!/usr/bin/env python3 # Copyright (c) Meta Platforms, Inc. and affiliates. # # This source code is licensed under the MIT license found in the # LICENSE file in the root directory of this source tree. # pyre-strict import math import sys import time import warnings from collections.abc import Sequence from itertools...
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# -*- coding: utf-8 -*- # # Copyright (c) 2013 Egor Zindy <egor.zindy@manchester.ac.uk> # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-...
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import abc import contextlib import datetime import logging import os import shutil import tarfile import tempfile from collections import defaultdict from collections.abc import ( Callable, Iterable, Iterator, ) from dataclasses import dataclass from enum import Enum from json import ( dump, dumps,...
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"""A mixin that extends a HasDriver class with Galaxy-specific utilities. Implementer must provide a self.build_url method to target Galaxy. """ import collections import contextlib import random import string import time from abc import abstractmethod from dataclasses import ( dataclass, field, ) from functo...
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# -*- coding: utf-8 -*- """ StitchingRigid ============== Stitching module for aligning and stitching data sets ridgidly. The module provides base classes and routines for stitching images. The :mod:`~ClearMap.Alignment.Stitching.StichingWobbly` module builds on this module. """ __author__ = 'Christoph Kirst <chr...
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#emacs: -*- mode: python; py-indent-offset: 4; indent-tabs-mode: nil -*- #ex: set sts=4 ts=4 sw=4 et: ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ## # # See the COPYING file distributed along with the smile package for the # copyright and license terms. # ### ### ### ### ### ### ### ...
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#!/usr/bin/env python3 # Copyright (c) Meta Platforms, Inc. and affiliates. # # This source code is licensed under the MIT license found in the # LICENSE file in the root directory of this source tree. # pyre-strict import logging from collections.abc import Callable from datetime import datetime from decimal import ...