file_name stringlengths 6 86 | file_path stringlengths 45 249 | content stringlengths 47 6.26M | file_size int64 47 6.26M | language stringclasses 1
value | extension stringclasses 1
value | repo_name stringclasses 767
values | repo_stars int64 8 14.4k | repo_forks int64 0 1.17k | repo_open_issues int64 0 788 | repo_created_at stringclasses 767
values | repo_pushed_at stringclasses 767
values |
|---|---|---|---|---|---|---|---|---|---|---|---|
CSVSummaryParser.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/parsers/CSVSummaryParser.java | /*
* CSVSummaryParser.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free So... | 13,089 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
MAFSorter.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/parsers/maf/MAFSorter.java | /*
* MAFSorter.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software ... | 9,137 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
ISAMIterator.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/parsers/blast/ISAMIterator.java | /*
* ISAMIterator.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Softwa... | 1,662 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
LastMAF2SAMIterator.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/parsers/blast/LastMAF2SAMIterator.java | /*
* LastMAF2SAMIterator.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free... | 10,406 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
BlastModeUtils.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/parsers/blast/BlastModeUtils.java | /*
* BlastModeUtils.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Soft... | 6,543 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
IteratorManager.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/parsers/blast/IteratorManager.java | /*
* IteratorManager.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Sof... | 3,624 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
PostProcessMatches.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/parsers/blast/PostProcessMatches.java | /*
* PostProcessMatches.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free ... | 7,471 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
Match.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/parsers/blast/Match.java | /*
* Match.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foun... | 1,673 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
IlluminaReporter2SAMIterator.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/parsers/blast/IlluminaReporter2SAMIterator.java | /*
* IlluminaReporter2SAMIterator.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
*... | 5,507 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
RAPSearchAln2SAMIterator.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/parsers/blast/RAPSearchAln2SAMIterator.java | /*
* RAPSearchAln2SAMIterator.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the... | 12,865 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
Utilities.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/parsers/blast/Utilities.java | /*
* Utilities.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software ... | 4,312 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
BlastXML2SAMIterator.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/parsers/blast/BlastXML2SAMIterator.java | /*
* BlastXML2SAMIterator.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Fre... | 4,825 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
BlastTab2SAMIterator.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/parsers/blast/BlastTab2SAMIterator.java | /*
* BlastTab2SAMIterator.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Fre... | 9,628 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
BlastP2SAMIterator.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/parsers/blast/BlastP2SAMIterator.java | /*
* BlastP2SAMIterator.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free ... | 1,507 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
BlastFileFormat.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/parsers/blast/BlastFileFormat.java | /*
* BlastFileFormat.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Sof... | 4,418 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
RDPAssignmentDetails2SAMIterator.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/parsers/blast/RDPAssignmentDetails2SAMIterator.java | /*
* RDPAssignmentDetails2SAMIterator.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published b... | 6,805 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
SAM2SAMIterator.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/parsers/blast/SAM2SAMIterator.java | /*
* SAM2SAMIterator.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Sof... | 6,578 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
BlastX2SAMIterator.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/parsers/blast/BlastX2SAMIterator.java | /*
* BlastX2SAMIterator.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free ... | 12,248 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
BlastN2SAMIterator.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/parsers/blast/BlastN2SAMIterator.java | /*
* BlastN2SAMIterator.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free ... | 13,904 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
SAMIteratorBase.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/parsers/blast/SAMIteratorBase.java | /*
* SAMIteratorBase.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Sof... | 8,718 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
RDPStandalone2SAMIterator.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/parsers/blast/RDPStandalone2SAMIterator.java | /*
* RDPStandalone2SAMIterator.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* th... | 4,920 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
Fasta2SAMIterator.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/parsers/blast/Fasta2SAMIterator.java | /*
* Fasta2SAMIterator.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free S... | 2,986 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
Mothur2SAMIterator.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/parsers/blast/Mothur2SAMIterator.java | /*
* Mothur2SAMIterator.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free ... | 5,211 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
MatchesText.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/parsers/blast/blastxml/MatchesText.java | /*
* MatchesText.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Softwar... | 1,512 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
InfoBlock.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/parsers/blast/blastxml/InfoBlock.java | /*
* InfoBlock.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software ... | 2,306 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
BlastXMLParser.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/parsers/blast/blastxml/BlastXMLParser.java | /*
* BlastXMLParser.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Soft... | 16,215 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
HSP.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/parsers/blast/blastxml/HSP.java | /*
* HSP.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Founda... | 2,710 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
SAMMatch.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/parsers/sam/SAMMatch.java | /*
* SAMMatch.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software F... | 42,971 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
Diff.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/parsers/sam/Diff.java | /*
* Diff.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Found... | 7,178 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
CigarOperator.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/parsers/sam/CigarOperator.java | /*
* CigarOperator.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Softw... | 4,119 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
SAMValidationError.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/parsers/sam/SAMValidationError.java | /*
* SAMValidationError.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free ... | 9,236 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
TextCigarCodec.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/parsers/sam/TextCigarCodec.java | /*
* TextCigarCodec.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Soft... | 3,528 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
Flag.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/parsers/sam/Flag.java | /*
* Flag.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Found... | 2,043 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
CigarElement.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/parsers/sam/CigarElement.java | /*
* CigarElement.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Softwa... | 1,814 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
Cigar.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/parsers/sam/Cigar.java | /*
* Cigar.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foun... | 10,433 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
Resources.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/resources/Resources.java | /*
* Resources.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software ... | 910 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
Utilities.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/ms/Utilities.java | /*
* Utilities.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software ... | 5,297 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
ClientMS.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/ms/client/ClientMS.java | /*
* ClientMS.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software F... | 7,673 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
ReadBlockMS.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/ms/client/connector/ReadBlockMS.java | /*
* ReadBlockMS.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Softwar... | 7,076 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
MatchBlockMS.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/ms/client/connector/MatchBlockMS.java | /*
* MatchBlockMS.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Softwa... | 6,268 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
MSConnector.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/ms/client/connector/MSConnector.java | /*
* MSConnector.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Softwar... | 6,373 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
ReadBlockGetterMS.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/ms/client/connector/ReadBlockGetterMS.java | /*
* ReadBlockGetterMS.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free S... | 3,504 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
ReadBlockIteratorMS.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/ms/client/connector/ReadBlockIteratorMS.java | /*
* ReadBlockIteratorMS.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free... | 4,897 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
ServicePanel.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/ms/clientdialog/ServicePanel.java | /*
* ServicePanel.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Softwa... | 14,834 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
IRemoteService.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/ms/clientdialog/IRemoteService.java | /*
* IRemoteService.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Soft... | 1,803 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
GUIConfiguration.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/ms/clientdialog/GUIConfiguration.java | /*
* GUIConfiguration.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free So... | 2,435 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
RemoteServiceBrowser.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/ms/clientdialog/RemoteServiceBrowser.java | /*
* RemoteServiceBrowser.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Fre... | 19,428 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
RemoteService.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/ms/clientdialog/service/RemoteService.java | /*
* RemoteService.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Softw... | 5,342 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
IService.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/ms/clientdialog/service/IService.java | /*
* IService.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software F... | 2,699 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
RemoteServiceManager.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/ms/clientdialog/service/RemoteServiceManager.java | /*
* RemoteServiceManager.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Fre... | 7,130 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
LocalService.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/ms/clientdialog/service/LocalService.java | /*
* LocalService.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Softwa... | 6,452 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
ExpandNodesCommand.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/ms/clientdialog/commands/ExpandNodesCommand.java | /*
* ExpandNodesCommand.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free ... | 4,072 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
OpenSelectedFilesCommand.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/ms/clientdialog/commands/OpenSelectedFilesCommand.java | /*
* OpenSelectedFilesCommand.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the... | 5,175 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
SelectNoneCommand.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/ms/clientdialog/commands/SelectNoneCommand.java | /*
* SelectNoneCommand.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free S... | 2,244 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
CollapseNodesCommand.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/ms/clientdialog/commands/CollapseNodesCommand.java | /*
* CollapseNodesCommand.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Fre... | 4,090 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
SelectAllCommand.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/ms/clientdialog/commands/SelectAllCommand.java | /*
* SelectAllCommand.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free So... | 2,714 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
OpenRemoteServerCommand.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/ms/clientdialog/commands/OpenRemoteServerCommand.java | /*
* OpenRemoteServerCommand.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the ... | 5,621 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
CloseRemoteServerCommand.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/ms/clientdialog/commands/CloseRemoteServerCommand.java | /*
* CloseRemoteServerCommand.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the... | 3,822 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
ShowServerInfoCommand.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/ms/clientdialog/commands/ShowServerInfoCommand.java | /*
* ShowServerInfoCommand.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Fr... | 3,335 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
CompareSelectedFilesCommand.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/ms/clientdialog/commands/CompareSelectedFilesCommand.java | /*
* CompareSelectedFilesCommand.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* ... | 4,900 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
HttpHandlerMS.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/ms/server/HttpHandlerMS.java | /*
* HttpHandlerMS.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Softw... | 3,302 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
ReadsOutputFormat.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/ms/server/ReadsOutputFormat.java | /*
* ReadsOutputFormat.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free S... | 1,572 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
Parameters.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/ms/server/Parameters.java | /*
* Parameters.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software... | 4,340 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
UserManager.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/ms/server/UserManager.java | /*
* UserManager.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Softwar... | 8,124 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
RequestHandler.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/ms/server/RequestHandler.java | /*
* RequestHandler.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Soft... | 20,047 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
ReadIteratorPagination.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/ms/server/ReadIteratorPagination.java | /*
* ReadIteratorPagination.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the F... | 6,201 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
Database.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/ms/server/Database.java | /*
* Database.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software F... | 11,502 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
RequestHandlerAdditional.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/ms/server/RequestHandlerAdditional.java | /*
* RequestHandlerAdditional.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the... | 3,518 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
HttpServerMS.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/ms/server/HttpServerMS.java | /*
* HttpServerMS.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Softwa... | 8,811 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
MeganServer.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/ms/server/MeganServer.java | /*
* MeganServer.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Softwar... | 6,196 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
RequestHandlerAdmin.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/ms/server/RequestHandlerAdmin.java | /*
* RequestHandlerAdmin.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free... | 6,795 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
ClusterAnalysisSearcher.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/clusteranalysis/ClusterAnalysisSearcher.java | /*
* ClusterAnalysisSearcher.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the ... | 5,010 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
TriangulationTest.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/clusteranalysis/TriangulationTest.java | /*
* TriangulationTest.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free S... | 11,285 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
LegendPanel.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/clusteranalysis/LegendPanel.java | /*
* LegendPanel.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Softwar... | 5,279 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
GUIConfiguration.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/clusteranalysis/GUIConfiguration.java | /*
* GUIConfiguration.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free So... | 5,132 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
ClusterViewer.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/clusteranalysis/ClusterViewer.java | /*
* ClusterViewer.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Softw... | 36,752 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
TaxonomyClusterViewer.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/clusteranalysis/TaxonomyClusterViewer.java | /*
* TaxonomyClusterViewer.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Fr... | 1,248 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
SyncDataTableAndNetwork.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/clusteranalysis/SyncDataTableAndNetwork.java | /*
* SyncDataTableAndNetwork.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the ... | 1,506 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
Distances.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/clusteranalysis/tree/Distances.java | /*
* Distances.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software ... | 2,868 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
UPGMA.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/clusteranalysis/tree/UPGMA.java | /*
* UPGMA.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foun... | 7,695 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
NJ.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/clusteranalysis/tree/NJ.java | /*
* NJ.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundat... | 11,373 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
Taxa.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/clusteranalysis/tree/Taxa.java | /*
* Taxa.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Found... | 4,936 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
PearsonDistance.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/clusteranalysis/indices/PearsonDistance.java | /*
* PearsonDistance.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Sof... | 4,818 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
DistancesManager.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/clusteranalysis/indices/DistancesManager.java | /*
* DistancesManager.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free So... | 3,333 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
ChiSquareDistance.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/clusteranalysis/indices/ChiSquareDistance.java | /*
* ChiSquareDistance.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free S... | 2,862 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
GoodallsDistance.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/clusteranalysis/indices/GoodallsDistance.java | /*
* GoodallsDistance.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free So... | 10,661 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
UniFrac.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/clusteranalysis/indices/UniFrac.java | /*
* UniFrac.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Fo... | 9,264 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
HellingerDistance.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/clusteranalysis/indices/HellingerDistance.java | /*
* HellingerDistance.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free S... | 2,818 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
BrayCurtisDissimilarity.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/clusteranalysis/indices/BrayCurtisDissimilarity.java | /*
* BrayCurtisDissimilarity.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the ... | 2,884 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
KulczynskiDistance.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/clusteranalysis/indices/KulczynskiDistance.java | /*
* KulczynskiDistance.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free ... | 2,966 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
JensenShannonDivergence.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/clusteranalysis/indices/JensenShannonDivergence.java | /*
* JensenShannonDivergence.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the ... | 4,429 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
EuclideanDistance.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/clusteranalysis/indices/EuclideanDistance.java | /*
* EuclideanDistance.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free S... | 2,802 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
TreeTabBase.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/clusteranalysis/gui/TreeTabBase.java | /*
* TreeTabBase.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Softwar... | 8,805 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
NJTab.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/clusteranalysis/gui/NJTab.java | /*
* NJTab.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foun... | 2,425 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
NNetTab.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/clusteranalysis/gui/NNetTab.java | /*
* NNetTab.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Fo... | 3,105 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
UPGMATab.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/clusteranalysis/gui/UPGMATab.java | /*
* UPGMATab.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software F... | 2,435 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
MatrixTab.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/clusteranalysis/gui/MatrixTab.java | /*
* MatrixTab.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software ... | 4,384 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
PCoATab.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/clusteranalysis/gui/PCoATab.java | /*
* PCoATab.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Fo... | 58,449 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
ITab.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/clusteranalysis/gui/ITab.java | /*
* ITab.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Found... | 2,203 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
Utilities.java | /FileExtraction/Java_unseen/husonlab_megan-ce/src/megan/clusteranalysis/pcoa/Utilities.java | /*
* Utilities.java Copyright (C) 2024 Daniel H. Huson
*
* (Some files contain contributions from other authors, who are then mentioned separately.)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software ... | 8,820 | Java | .java | husonlab/megan-ce | 62 | 21 | 18 | 2016-05-09T10:55:38Z | 2024-02-22T23:23:42Z |
Subsets and Splits
No community queries yet
The top public SQL queries from the community will appear here once available.