metadata
license: apache-2.0
language:
- en
tags:
- biology
pretty_name: FoldDock
source_datasets: >-
Improved prediction of protein-protein interactions using AlphaFold2 (Bryant,
P., Pozzati, G., Elofsson, A. 2022 Nature Communications)
configs:
- config_name: complexes
datafiles:
- split: train
path: complexes_mark.csv
- split: test
path: complexes_dockground.csv
dataset_info:
features:
- name: PDB
dtype: string
- name: Sequence Length 1
dtype: int64
- name: Sequence Length 2
dtype: int64
- name: Chain 1
dtype: string
- name: Chain 2
dtype: string
- name: seq1
dtype: string
- name: seq2
dtype: string
- name: concatenated_seq
dtype: string
- name: kingdom1
dtype: string
- name: complex_id
dtype: string
- name: kingdom2
dtype: string
- name: prefix
dtype: string
- name: Uniprot ID 1
dtype: string
- name: Uniprot ID 2
dtype: string
- name: N residue contacts (5Ang)
dtype: string
- name: PFAM domains 1
dtype: string
- name: PFAM domains 2
dtype: string
- name: Chain start 1
dtype: string
- name: Chain end 1
dtype: string
- name: Chain start 2
dtype: string
- name: Chain end 2
dtype: string
- name: Protein name 1
dtype: string
- name: Gene name 1
dtype: string
- name: Protein name 2
dtype: string
- name: Gene name 2
dtype: string
- name: Organism 1
dtype: string
- name: Organism 2
dtype: string
- name: Resolution (Ang)
dtype: string
- name: contains DNA
dtype: string
- name: contains RNA
dtype: string
- name: Org1
dtype: string
- name: Org2
dtype: string
splits:
- name: train
num_bytes: 1452167
num_examples: 1675
- name: test
num_bytes: 193432
num_examples: 219
- config_name: quality
datafiles:
- split: marks
path: quality_marks.csv
- split: dockground
path: quality_dockground.csv
dataset_info:
features:
- name: id1
dtype: string
- name: id2
dtype: string
- name: if_plddt_av_2
dtype: float64
- name: if_plddt_std_2
dtype: float64
- name: ch1_plddt_av_2
dtype: float64
- name: ch1_plddt_std_2
dtype: float64
- name: ch2_plddt_av_2
dtype: float64
- name: ch2_plddt_std_2
dtype: float64
- name: plddt_av_2
dtype: float64
- name: plddt_std_2
dtype: float64
- name: num_atoms_in_interface_2
dtype: int64
- name: num_res_in_interface_2
dtype: int64
- name: if_plddt_av_1
dtype: float64
- name: if_plddt_std_1
dtype: float64
- name: ch1_plddt_av_1
dtype: float64
- name: ch1_plddt_std_1
dtype: float64
- name: ch2_plddt_av_1
dtype: float64
- name: ch2_plddt_std_1
dtype: float64
- name: plddt_av_1
dtype: float64
- name: plddt_std_1
dtype: float64
- name: num_atoms_in_interface_1
dtype: int64
- name: num_res_in_interface_1
dtype: int64
- name: if_plddt_av_4
dtype: float64
- name: if_plddt_std_4
dtype: float64
- name: ch1_plddt_av_4
dtype: float64
- name: ch1_plddt_std_4
dtype: float64
- name: ch2_plddt_av_4
dtype: float64
- name: ch2_plddt_std_4
dtype: float64
- name: plddt_av_4
dtype: float64
- name: plddt_std_4
dtype: float64
- name: num_atoms_in_interface_4
dtype: int64
- name: num_res_in_interface_4
dtype: int64
- name: if_plddt_av_3
dtype: float64
- name: if_plddt_std_3
dtype: float64
- name: ch1_plddt_av_3
dtype: float64
- name: ch1_plddt_std_3
dtype: float64
- name: ch2_plddt_av_3
dtype: float64
- name: ch2_plddt_std_3
dtype: float64
- name: plddt_av_3
dtype: float64
- name: plddt_std_3
dtype: float64
- name: num_atoms_in_interface_3
dtype: int64
- name: num_res_in_interface_3
dtype: int64
- name: if_plddt_av_5
dtype: float64
- name: if_plddt_std_5
dtype: float64
- name: ch1_plddt_av_5
dtype: float64
- name: ch1_plddt_std_5
dtype: float64
- name: ch2_plddt_av_5
dtype: float64
- name: ch2_plddt_std_5
dtype: float64
- name: plddt_av_5
dtype: float64
- name: plddt_std_5
dtype: float64
- name: num_atoms_in_interface_5
dtype: int64
- name: num_res_in_interface_5
dtype: int64
- name: complex_id
dtype: string
- name: source
dtype: string
- name: allpdb2120
dtype: string
splits:
- name: marks
num_bytes: 1141708
num_examples: 1481
- name: dockground
num_bytes: 167697
num_examples: 216