README.md

---
license: apache-2.0
language:
- en
tags:
- biology
pretty_name: FoldDock
source_datasets: Improved prediction of protein-protein interactions using AlphaFold2
  (Bryant, P., Pozzati, G., Elofsson, A. 2022 Nature Communications)
configs:
  - config_name: complexes
    datafiles:
      - split: train
        path: complexes_mark.csv
      - split: test
        path: complexes_dockground.csv
    dataset_info:
      features:
        - name: PDB
          dtype: string
        - name: Sequence Length 1
          dtype: int64
        - name: Sequence Length 2
          dtype: int64
        - name: Chain 1
          dtype: string
        - name: Chain 2
          dtype: string
        - name: seq1
          dtype: string
        - name: seq2
          dtype: string
        - name: concatenated_seq
          dtype: string
        - name: kingdom1
          dtype: string
        - name: complex_id
          dtype: string
        - name: kingdom2
          dtype: string
        - name: prefix
          dtype: string
        - name: Uniprot ID 1
          dtype: string
        - name: Uniprot ID 2
          dtype: string
        - name: N residue contacts (5Ang)
          dtype: string
        - name: PFAM domains 1
          dtype: string
        - name: PFAM domains 2
          dtype: string
        - name: Chain start 1
          dtype: string
        - name: Chain end 1
          dtype: string
        - name: Chain start 2
          dtype: string
        - name: Chain end 2
          dtype: string
        - name: Protein name 1
          dtype: string
        - name: Gene name 1
          dtype: string
        - name: Protein name 2
          dtype: string
        - name: Gene name 2
          dtype: string
        - name: Organism 1
          dtype: string
        - name: Organism 2
          dtype: string
        - name: Resolution (Ang)
          dtype: string
        - name: contains DNA
          dtype: string
        - name: contains RNA
          dtype: string
        - name: Org1
          dtype: string
        - name: Org2
          dtype: string
      splits:
        - name: train
          num_bytes: 1452167
          num_examples: 1675
        - name: test
          num_bytes: 193432
          num_examples: 219

  - config_name: quality
    datafiles:
      - split: marks
        path: quality_marks.csv
      - split: dockground
        path: quality_dockground.csv
    dataset_info:
      features:
        - name: id1
          dtype: string
        - name: id2
          dtype: string
        - name: if_plddt_av_2
          dtype: float64
        - name: if_plddt_std_2
          dtype: float64
        - name: ch1_plddt_av_2
          dtype: float64
        - name: ch1_plddt_std_2
          dtype: float64
        - name: ch2_plddt_av_2
          dtype: float64
        - name: ch2_plddt_std_2
          dtype: float64
        - name: plddt_av_2
          dtype: float64
        - name: plddt_std_2
          dtype: float64
        - name: num_atoms_in_interface_2
          dtype: int64
        - name: num_res_in_interface_2
          dtype: int64
        - name: if_plddt_av_1
          dtype: float64
        - name: if_plddt_std_1
          dtype: float64
        - name: ch1_plddt_av_1
          dtype: float64
        - name: ch1_plddt_std_1
          dtype: float64
        - name: ch2_plddt_av_1
          dtype: float64
        - name: ch2_plddt_std_1
          dtype: float64
        - name: plddt_av_1
          dtype: float64
        - name: plddt_std_1
          dtype: float64
        - name: num_atoms_in_interface_1
          dtype: int64
        - name: num_res_in_interface_1
          dtype: int64
        - name: if_plddt_av_4
          dtype: float64
        - name: if_plddt_std_4
          dtype: float64
        - name: ch1_plddt_av_4
          dtype: float64
        - name: ch1_plddt_std_4
          dtype: float64
        - name: ch2_plddt_av_4
          dtype: float64
        - name: ch2_plddt_std_4
          dtype: float64
        - name: plddt_av_4
          dtype: float64
        - name: plddt_std_4
          dtype: float64
        - name: num_atoms_in_interface_4
          dtype: int64
        - name: num_res_in_interface_4
          dtype: int64
        - name: if_plddt_av_3
          dtype: float64
        - name: if_plddt_std_3
          dtype: float64
        - name: ch1_plddt_av_3
          dtype: float64
        - name: ch1_plddt_std_3
          dtype: float64
        - name: ch2_plddt_av_3
          dtype: float64
        - name: ch2_plddt_std_3
          dtype: float64
        - name: plddt_av_3
          dtype: float64
        - name: plddt_std_3
          dtype: float64
        - name: num_atoms_in_interface_3
          dtype: int64
        - name: num_res_in_interface_3
          dtype: int64
        - name: if_plddt_av_5
          dtype: float64
        - name: if_plddt_std_5
          dtype: float64
        - name: ch1_plddt_av_5
          dtype: float64
        - name: ch1_plddt_std_5
          dtype: float64
        - name: ch2_plddt_av_5
          dtype: float64
        - name: ch2_plddt_std_5
          dtype: float64
        - name: plddt_av_5
          dtype: float64
        - name: plddt_std_5
          dtype: float64
        - name: num_atoms_in_interface_5
          dtype: int64
        - name: num_res_in_interface_5
          dtype: int64
        - name: complex_id
          dtype: string
        - name: source
          dtype: string
        - name: allpdb2120
          dtype: string
      splits:
        - name: marks
          num_bytes: 1141708
          num_examples: 1481
        - name: dockground
          num_bytes: 167697 
          num_examples: 216
---