PDB_ID_chain stringlengths 6 10 | PDB_ID stringlengths 4 4 | Title stringlengths 4 230 | Mutation(s) stringclasses 2
values | Classification stringclasses 305
values | Deposit_date stringdate 1976-03-17 00:00:00 2026-01-20 00:00:00 | Release_date stringdate 1976-05-19 00:00:00 2026-02-25 00:00:00 | Method stringclasses 5
values | Resolution stringclasses 459
values | R_free stringclasses 227
values | R_work stringclasses 211
values | PMID stringlengths 4 8 | DOI stringlengths 4 68 | Model_index int64 0 76 | Asym_ID_type stringclasses 2
values | Ab_type stringclasses 30
values | H_subgroup stringclasses 8
values | L_subgroup stringclasses 19
values | H_chain_ID stringclasses 60
values | L_chain_ID stringclasses 58
values | H_fas_seq stringlengths 4 919 | L_fas_seq stringlengths 4 627 | H_filled_pdb_seq stringlengths 4 896 | L_filled_pdb_seq stringlengths 4 523 | H_mean_radius float64 0 79.7 | L_mean_radius float64 0 84.3 | H_fas_seq_len int64 0 919 | L_fas_seq_len int64 0 627 | H_pdb_seq_len int64 0 879 | L_pdb_seq_len int64 0 523 | H_filled_seq_len int64 0 896 | L_filled_seq_len int64 0 523 | HL_inf_res_num int64 0 175 | H_mol_name stringlengths 2 331 | L_mol_name stringlengths 2 151 | H_species stringclasses 68
values | L_species stringclasses 42
values | Ag_chain_ID(s) stringclasses 279
values | Ag_type(s) stringclasses 16
values | Ag_mol_name(s) stringlengths 2 390 | Ag_species stringclasses 743
values | Ab_ag_inf_res_num stringlengths 1 11 | CDR_inf_res_num stringclasses 444
values | CDR_inf_res_ratio stringlengths 1 19 | hl_label stringclasses 3
values | split stringclasses 1
value |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
7kfw_H_L | 7kfw | structural basis for a germline-biased antibody response to sars-cov-2 (rbd:c1a-b3 fab) | no | immune system/viral protein | 2020-10-15 | 2020-12-02 | x-ray diffraction | 2.79 | 0.229 | 0.189 | 33200128 | 10.1101/2020.11.13.381533 | 0 | auth_asym_id | FabH:FabL | IGHV3 | IGKV1 | H | L | EVQLVESGGGLIQPGGSLRLSCAASGFTVSSNYMSWVRQAPGKGLEWVSVIYSGGTTYYADSVKGRFTISRDNSKNTVFLQMNSLRAEDTAVYYCARGDVSGYRYGLDYWGQGTLVTVSGASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDR | DIQLTQSPSSLSASVGDRVTITCRASQGISSYLAWYQQKPGKAPKLLIYAASTLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQLNSYPGTFGQGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | EVQLVESGGGLIQPGGSLRLSCAASGFTVSSNYMSWVRQAPGKGLEWVSVIYSGGTTYYADSVKGRFTISRDNSKNTVFLQMNSLRAEDTAVYYCARGDVSGYRYGLDYWGQGTLVTVSGASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKS | DIQLTQSPSSLSASVGDRVTITCRASQGISSYLAWYQQKPGKAPKLLIYAASTLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQLNSYPGTFGQGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | 21.189615 | 23.316408 | 225 | 214 | 222 | 214 | 222 | 214 | 104 | heavy chain of antibody c1a-b3 fab | light chain of antibody c1a-b3 fab | homo sapiens | homo sapiens | A | protein | spike glycoprotein | severe acute respiratory syndrome coronavirus 2 | 65 | 23 | 0.72 | HL | train |
7kfw_C_D | 7kfw | structural basis for a germline-biased antibody response to sars-cov-2 (rbd:c1a-b3 fab) | no | immune system/viral protein | 2020-10-15 | 2020-12-02 | x-ray diffraction | 2.79 | 0.229 | 0.189 | 33200128 | 10.1101/2020.11.13.381533 | 0 | auth_asym_id | FabH:FabL | IGHV3 | IGKV1 | C | D | EVQLVESGGGLIQPGGSLRLSCAASGFTVSSNYMSWVRQAPGKGLEWVSVIYSGGTTYYADSVKGRFTISRDNSKNTVFLQMNSLRAEDTAVYYCARGDVSGYRYGLDYWGQGTLVTVSGASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDR | DIQLTQSPSSLSASVGDRVTITCRASQGISSYLAWYQQKPGKAPKLLIYAASTLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQLNSYPGTFGQGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | EVQLVESGGGLIQPGGSLRLSCAASGFTVSSNYMSWVRQAPGKGLEWVSVIYSGGTTYYADSVKGRFTISRDNSKNTVFLQMNSLRAEDTAVYYCARGDVSGYRYGLDYWGQGTLVTVSGASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKS | DIQLTQSPSSLSASVGDRVTITCRASQGISSYLAWYQQKPGKAPKLLIYAASTLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQLNSYPGTFGQGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | 21.109118 | 23.32087 | 225 | 214 | 222 | 214 | 222 | 214 | 97 | heavy chain of antibody c1a-b3 fab | light chain of antibody c1a-b3 fab | homo sapiens | homo sapiens | B | protein | spike glycoprotein | severe acute respiratory syndrome coronavirus 2 | 66 | 22 | 0.71 | HL | train |
7kfw_F_G | 7kfw | structural basis for a germline-biased antibody response to sars-cov-2 (rbd:c1a-b3 fab) | no | immune system/viral protein | 2020-10-15 | 2020-12-02 | x-ray diffraction | 2.79 | 0.229 | 0.189 | 33200128 | 10.1101/2020.11.13.381533 | 0 | auth_asym_id | FabH:FabL | IGHV3 | IGKV1 | F | G | EVQLVESGGGLIQPGGSLRLSCAASGFTVSSNYMSWVRQAPGKGLEWVSVIYSGGTTYYADSVKGRFTISRDNSKNTVFLQMNSLRAEDTAVYYCARGDVSGYRYGLDYWGQGTLVTVSGASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDR | DIQLTQSPSSLSASVGDRVTITCRASQGISSYLAWYQQKPGKAPKLLIYAASTLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQLNSYPGTFGQGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | EVQLVESGGGLIQPGGSLRLSCAASGFTVSSNYMSWVRQAPGKGLEWVSVIYSGGTTYYADSVKGRFTISRDNSKNTVFLQMNSLRAEDTAVYYCARGDVSGYRYGLDYWGQGTLVTVSGASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKS | DIQLTQSPSSLSASVGDRVTITCRASQGISSYLAWYQQKPGKAPKLLIYAASTLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQLNSYPGTFGQGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | 22.777124 | 22.592585 | 225 | 214 | 219 | 214 | 222 | 214 | 101 | heavy chain of antibody c1a-b3 fab | light chain of antibody c1a-b3 fab | homo sapiens | homo sapiens | E | protein | spike glycoprotein | severe acute respiratory syndrome coronavirus 2 | 67 | 23 | 0.72 | HL | train |
7kfx_H_L | 7kfx | structural basis for a germline-biased antibody response to sars-cov-2 (rbd:c1a-c2 fab) | no | immune system/viral protein | 2020-10-15 | 2020-12-02 | x-ray diffraction | 2.23 | 0.226 | 0.191 | 33200128 | 10.1101/2020.11.13.381533 | 0 | auth_asym_id | FabH:FabL | IGHV3 | IGKV1 | H | L | EVQLVESGGGLIQPGGSLRLSCAVSGFTVSNNYMSWVRQAPGKGLEWVSVIYSGGTTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARGDVSGYRYGLDYWGQGTLVTVSGASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDR | DIQLTQSPSSLSAFVGDRVTITCRASEGISSYLAWYQQKPGNAPKLLIYAASTLESGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQLNSYPGTFGQGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | EVQLVESGGGLIQPGGSLRLSCAVSGFTVSNNYMSWVRQAPGKGLEWVSVIYSGGTTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARGDVSGYRYGLDYWGQGTLVTVSGASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDR | DIQLTQSPSSLSAFVGDRVTITCRASEGISSYLAWYQQKPGNAPKLLIYAASTLESGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQLNSYPGTFGQGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | 23.855598 | 22.388649 | 225 | 214 | 225 | 214 | 225 | 214 | 106 | heavy chain of human antibody c1a-c2 fab | light chain of human antibody c1a-c2 fab | homo sapiens | homo sapiens | A | protein | spike glycoprotein | severe acute respiratory syndrome coronavirus 2 | 68 | 24 | 0.73 | HL | train |
7kfy_H_L | 7kfy | structural basis for a germline-biased antibody response to sars-cov-2 (rbd:c1a-f10 fab) | no | immune system/viral protein | 2020-10-15 | 2020-12-02 | x-ray diffraction | 2.16 | 0.249 | 0.205 | 33200128 | 10.1101/2020.11.13.381533 | 0 | auth_asym_id | FabH:FabL | IGHV3 | IGKV1 | H | L | EVQLVESGGGLIQPGGSLRLSCAASGFTVSSNYMSWVRQAPGKGLEWVSVIYSGGTTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARGDVSGYRYGLDYWGQGTLVTVSGASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDR | DIQLTQSPSSLSASVGDRVTITCRASQGISSYLAWYQQKPGKAPKLLIYAASTLENGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQLNSYPGTFGQGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | EVQLVESGGGLIQPGGSLRLSCAASGFTVSSNYMSWVRQAPGKGLEWVSVIYSGGTTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARGDVSGYRYGLDYWGQGTLVTVSGASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSC | DIQLTQSPSSLSASVGDRVTITCRASQGISSYLAWYQQKPGKAPKLLIYAASTLENGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQLNSYPGTFGQGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | 23.288235 | 22.438536 | 225 | 214 | 223 | 214 | 223 | 214 | 107 | heavy chain of human antibody c1a-f10 fab | light chain of human antibody c1a-f10 fab | homo sapiens | homo sapiens | A | protein | spike glycoprotein | severe acute respiratory syndrome coronavirus 2 | 67 | 24 | 0.73 | HL | train |
7kgj_B | 7kgj | crystal structure of synthetic nanobody (sb45) complexes with sars-cov-2 receptor binding domain | no | viral protein | 2020-10-16 | 2021-02-03 | x-ray diffraction | 2.3 | 0.216 | 0.186 | 34537245 | 10.1016/j.jbc.2021.101202 | 0 | auth_asym_id | VHH | IGHV3 | N.A. | B | N.A. | QVQLVESGGGLVQAGGSLRLSCAASGFPVYRDRMAWYRQAPGKEREWVAAIYSAGQQTRYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCNVKDVGHHYEYYDYWGQGTQVTVSA | N.A. | QVQLVESGGGLVQAGGSLRLSCAASGFPVYRDRMAWYRQAPGKEREWVAAIYSAGQQTRYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCNVKDVGHHYEYYDYWGQGTQVTVSA | N.A. | 14.370239 | 0 | 121 | 0 | 121 | 0 | 121 | 0 | 0 | sb45, sybody-45, synthetic nanobody | N.A. | synthetic construct | N.A. | A | protein | spike glycoprotein | severe acute respiratory syndrome coronavirus 2 | 67 | 19 | 0.61 | H_only | train |
7kgk_B | 7kgk | crystal structure of synthetic nanobody (sb16) complexes with sars-cov-2 receptor binding domain | no | viral protein | 2020-10-16 | 2021-02-03 | x-ray diffraction | 2.6 | 0.276 | 0.258 | 34537245 | 10.1016/j.jbc.2021.101202 | 0 | auth_asym_id | VHH | IGHV3 | N.A. | B | N.A. | QVQLVESGGGLVQAGGSLRLSCAASGFPVAYKTMWWYRQAPGKEREWVAAIESYGIKWTRYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCIVWVGAQYHGQGTQVTVSAGRA | N.A. | QVQLVESGGGLVQAGGSLRLSCAASGFPVAYKTMWWYRQAPGKEREWVAAIESYGIKWTRYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCIVWVGAQYHGQGTQVTVSAGRA | N.A. | 14.258274 | 0 | 119 | 0 | 119 | 0 | 119 | 0 | 0 | sb16, sybody-16, synthetic nanobody | N.A. | synthetic construct | N.A. | A | protein | spike protein s1 | severe acute respiratory syndrome coronavirus 2 | 48 | 13 | 0.59 | H_only | train |
7apj_B | 7apj | structure of autoinhibited akt1 reveals mechanism of pip3-mediated activation | yes | signaling protein | 2020-10-16 | 2021-08-25 | x-ray diffraction | 2.05 | 0.252 | 0.211 | 34385319 | 10.1073/pnas.2101496118 | 0 | auth_asym_id | VHH | IGHV3 | N.A. | B | N.A. | QVQLVESGGGLVQAGGSLRLSCAASGIDVRIKTMAWYRQAPGKQRELLASVLVSGSTNYADPVKGRFTISRDNAKNTVYLQMNKLIPDDTAVYYCNTYGRLRRDVWGPGTQVTVSSHHHHHHEPEA | N.A. | QLVESGGGLVQAGGSLRLSCAASGIDVRIKTMAWYRQAPGKQRELLASVLVSGSTNYADPVKGRFTISRDNAKNTVYLQMNKLIPDDTAVYYCNTYGRLRRDVWGPGTQVTVSSHHH | N.A. | 13.901589 | 0 | 126 | 0 | 117 | 0 | 117 | 0 | 0 | nb41 | N.A. | lama glama | N.A. | A | protein | rac-alpha serine/threonine-protein kinase,non-specific serine/threonine protein kinase,rac-alpha serine/threonine-protein kinase | homo sapiens | 36 | 9 | 0.39 | H_only | train |
7daa_H_L | 7daa | crystal structure of basigin complexed with anti-basigin fab fragment | yes | chaperone | 2020-10-16 | 2021-10-20 | x-ray diffraction | 2.51 | 0.283 | 0.228 | 34625749 | 10.1038/s41594-021-00665-8 | 0 | auth_asym_id | FabH:FabL | IGHV3 | IGKV1 | H | L | QSVEESGGRLVTPGTPLTLTCTVSGFSLSDYAMSWVRQAPGKGLEWIGIIYASGSTYYASWAKGRFTISKTSTTVDLKITSPTTEDTATYFCARYYAGSDIWGPGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDK | ADVVMTQTPSSVSAAVGGTVTINCQASQSISAYLAWYQQKPGQPPKLLIYDASDLASGVSSRFKGSGSGTQFTLTISDLECADAATYYCQTYYAIITYGAAFGGGTEVVVKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDCTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | SVEESGGRLVTPGTPLTLTCTVSGFSLSDYAMSWVRQAPGKGLEWIGIIYASGSTYYASWAKGRFTISKTSTTVDLKITSPTTEDTATYFCARYYAGSDIWGPGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKS | ADVVMTQTPSSVSAAVGGTVTINCQASQSISAYLAWYQQKPGQPPKLLIYDASDLASGVSSRFKGSGSGTQFTLTISDLECADAATYYCQTYYAIITYGAAFGGGTEVVVKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDCTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE | 20.657618 | 23.540472 | 217 | 218 | 211 | 217 | 213 | 217 | 98 | heavy chain of antibody fab fragment | light chain of antibody fab fragment | homo sapiens | homo sapiens | A | protein | isoform 2 of basigin | homo sapiens | 46 | 16 | 0.7 | HL | train |
7kgv_D_F | 7kgv | crystal structure of sodium-coupled neutral amino acid transporter slc38a9 in the n-terminal plugged form | yes | transport protein | 2020-10-19 | 2020-12-23 | x-ray diffraction | 3.4 | 0.284 | 0.251 | 33296665 | 10.1016/j.str.2020.11.014 | 0 | auth_asym_id | FabH:FabL | IGHV7 | IGKV1 | D | F | QIQLVQSGPKLSKPGATDKISCAAGGYSFTDYVMNWVKASPLKGLEWNGSINTSNGATTYISAFKGAGSHSVDSSASTAAQQLSALKAADTAVYFCARNFRGNGAMDYWGQGTSVTVSSAKTTAPSVYPLEVSAAXATGSSVTLGCLVKGYFPEPCTLTWNSGSLSSGVHTFPAVLASDLYTLSSSVTVTSSTWPSQSITCNVAHPASSTKVDKKIEPA | DILLTQSPESLSVVVGFYVTITSQASNNITTYSSFIFWYQQKPGQAPKLLIYDSSTLESGIPGRFSGSGSGRDFSLTIAPNQPACGATYEDLQVLIVVRTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGAEVVCFLNNFYPKNINVAWKIDGGERQNGVLNSWTDQDSADSTYSMSSTLTLTKDEYERHASYTCEATHQTSTSPIVKSFNRN | QIQLVQSGPKLSKPGATDKISCAAGGYSFTDYVMNWVKASPLKGLEWNGSINTSNGATTYISAFKGAGSHSVDSSASTAAQQLSALKAADTAVYFCARNFRGNGAMDYWGQGTSVTVSSAKTTAPSVYPLEVSAAXATGSSVTLGCLVKGYFPEPCTLTWNSGSLSSGVHTFPAVLASDLYTLSSSVTVTSSTWPSQSITCNVAHPASSTKVDKKIEPA | DILLTQSPESLSVVVGFYVTITSQASNNITTYSSFIFWYQQKPGQAPKLLIYDSSTLESGIPGRFSGSGSGRDFSLTIAPNQPACGATYEDLQVLIVVRTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGAEVVCFLNNFYPKNINVAWKIDGGERQNGVLNSWTDQDSADSTYSMSSTLTLTKDEYERHASYTCEATHQTSTSPIVKSFNRN | 21.338453 | 23.550783 | 219 | 215 | 216 | 215 | 219 | 215 | 102 | monoclonal antibody fab heavy chain | monoclonal antibody fab light chain | mus musculus | mus musculus | A | protein | sodium-coupled neutral amino acid transporter 9 | danio rerio | 49 | 20 | 0.8 | HL | train |
7kgv_C_E | 7kgv | crystal structure of sodium-coupled neutral amino acid transporter slc38a9 in the n-terminal plugged form | yes | transport protein | 2020-10-19 | 2020-12-23 | x-ray diffraction | 3.4 | 0.284 | 0.251 | 33296665 | 10.1016/j.str.2020.11.014 | 0 | auth_asym_id | FabH:FabL | IGHV7 | IGKV1 | C | E | QIQLVQSGPKLSKPGATDKISCAAGGYSFTDYVMNWVKASPLKGLEWNGSINTSNGATTYISAFKGAGSHSVDSSASTAAQQLSALKAADTAVYFCARNFRGNGAMDYWGQGTSVTVSSAKTTAPSVYPLEVSAAXATGSSVTLGCLVKGYFPEPCTLTWNSGSLSSGVHTFPAVLASDLYTLSSSVTVTSSTWPSQSITCNVAHPASSTKVDKKIEPA | DILLTQSPESLSVVVGFYVTITSQASNNITTYSSFIFWYQQKPGQAPKLLIYDSSTLESGIPGRFSGSGSGRDFSLTIAPNQPACGATYEDLQVLIVVRTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGAEVVCFLNNFYPKNINVAWKIDGGERQNGVLNSWTDQDSADSTYSMSSTLTLTKDEYERHASYTCEATHQTSTSPIVKSFNRN | QIQLVQSGPKLSKPGATDKISCAAGGYSFTDYVMNWVKASPLKGLEWNGSINTSNGATTYISAFKGAGSHSVDSSASTAAQQLSALKAADTAVYFCARNFRGNGAMDYWGQGTSVTVSSAKTTAPSVYPLEVSAAXATGSSVTLGCLVKGYFPEPCTLTWNSGSLSSGVHTFPAVLASDLYTLSSSVTVTSSTWPSQSITCNVAHPASSTKVDKKIEPA | DILLTQSPESLSVVVGFYVTITSQASNNITTYSSFIFWYQQKPGQAPKLLIYDSSTLESGIPGRFSGSGSGRDFSLTIAPNQPACGATYEDLQVLIVVRTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGAEVVCFLNNFYPKNINVAWKIDGGERQNGVLNSWTDQDSADSTYSMSSTLTLTKDEYERHASYTCEATHQTSTSPIVKSFNRN | 21.46711 | 23.523886 | 219 | 215 | 217 | 215 | 219 | 215 | 103 | monoclonal antibody fab heavy chain | monoclonal antibody fab light chain | mus musculus | mus musculus | B | protein | sodium-coupled neutral amino acid transporter 9 | danio rerio | 52 | 22 | 0.81 | HL | train |
7kh0_N | 7kh0 | cryo-em structure of the human arginine vasopressin avp-vasopressin receptor v2r-gs signaling complex | yes | signaling protein | 2020-10-19 | 2021-05-26 | electron microscopy | 2.8 | N.A. | N.A. | 33664408 | 10.1038/s41422-021-00483-z | 0 | auth_asym_id | VHH | IGHV3 | N.A. | N | N.A. | QVQLQESGGGLVQPGGSLRLSCAASGFTFSNYKMNWVRQAPGKGLEWVSDISQSGASISYTGSVKGRFTISRDNAKNTLYLQMNSLKPEDTAVYYCARCPAPFTRDCFDVTSTTYAYRGQGTQVTVSSHHHHHH | N.A. | QVQLQESGGGLVQPGGSLRLSCAASGFTFSNYKMNWVRQAPGKGLEWVSDISQSGASISYTGSVKGRFTISRDNAKNTLYLQMNSLKPEDTAVYYCARCPAPFTRDCFDVTSTTYAYRGQGTQVTV | N.A. | 13.804482 | 0 | 134 | 0 | 126 | 0 | 126 | 0 | 0 | nanobody 35 | N.A. | lama glama | N.A. | B;A | protein;protein | guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1;guanine nucleotide-binding protein g(i) subunit alpha-3, isoform gnas-2 of guanine nucleotide-binding protein g(s) subunit alpha isoforms short fusion | homo sapiens;homo sapiens | 31;47 | 11;13 | 0.73;0.54 | H_only | train |
7kh0_S | 7kh0 | cryo-em structure of the human arginine vasopressin avp-vasopressin receptor v2r-gs signaling complex | yes | signaling protein | 2020-10-19 | 2021-05-26 | electron microscopy | 2.8 | N.A. | N.A. | 33664408 | 10.1038/s41422-021-00483-z | 0 | auth_asym_id | scFv | N.A. | N.A. | S | N.A. | DVQLVESGGGLVQPGGSRKLSCSASGFAFSSFGMHWVRQAPEKGLEWVAYISSGSGTIYYADTVKGRFTISRDDPKNTLFLQMTSLRSEDTAMYYCVRSIYYYGSSPFDFWGQGTTLTVSSGGGGSGGGGSGGGGSDIVMTQATSSVPVTPGLSVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLTISRLEAEDVGVYYCMQHLEYPLTFGAGTKLELK | N.A. | DVQLVESGGGLVQPGGSRKLSCSASGFAFSSFGMHWVRQAPEKGLEWVAYISSGSGTIYYADTVKGRFTISRDDPKNTLFLQMTSLRSEDTAMYYCVRSIYYYGSSPFDFWGQGTTLTVSSGGGGSGGGGSGGGGSDIVMTQATSSVPVTPGLSVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLTISRLEAEDVGVYYCMQHLEYPLTFGAGTKLELK | N.A. | 17.77484 | 0 | 248 | 0 | 236 | 0 | 248 | 0 | 0 | single fab chain (scfv16) | N.A. | homo sapiens | N.A. | B;A | protein;protein | guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1;guanine nucleotide-binding protein g(i) subunit alpha-3, isoform gnas-2 of guanine nucleotide-binding protein g(s) subunit alpha isoforms short fusion | homo sapiens;homo sapiens | 23;29 | 9;17 | 0.82;0.94 | H_only | train |
7khf_A_L | 7khf | cryoem structure of lilrb1 d3d4 domain-inserted antibody mdb1 fab in complex with plasmodium rifin (pf3d7_1373400) v2 domain | no | immune system | 2020-10-21 | 2021-03-31 | electron microscopy | 3.54 | N.A. | N.A. | 33790470 | 10.1038/s41586-021-03378-6 | 0 | auth_asym_id | VH+:FabL | IGHV2 | IGLV3 | A | L | QITLKESGPTLVERTQTLTLTCTFSGFSLTTDGLGVGWIRQPPGKALEWLALIYYDDVRRYRPSLKSRLTITKDTSKNRVVLTVTDMDPVDAGTYFCVHASLFNLGSRNVYFRYWGQGTLVSVSSGVSKKPSLSVQPGPIVAPEETLTLQCGSDAGYNRFVLYKDGERDFLQLAGAQPQAGLSQANFTLGPVSRSYGGQYRCYGAHNLSSEWSAPSDPLDILIAGQFYDRVSLSVQPGPTVASGENVTLLCQSQGWMQTFLLTKEGAADDPWRLRSTYQSQKYQAEFPMGPVTSAHAGTYRCYGSQSSKPYLLTHPSDPL... | SYDLTQPPSVSVSPGQTARITCSGDSLARQFASWYQQKPGQSPVLLIYKNIERLSAIPERFSGSTSGTSVTLTISGVQAEDEADYFCQSADDSGSYSLFGTGTRVSVLGQPKANPTVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS | QITLKESGPTLVERTQTLTLTCTFSGFSLTTDGLGVGWIRQPPGKALEWLALIYYDDVRRYRPSLKSRLTITKDTSKNRVVLTVTDMDPVDAGTYFCVHASLFNLGSRNVYFRYWGQGTLVSVSSGVSKKPSLSVQPGPIVAPEETLTLQCGSDAGYNRFVLYKDGERDFLQLAGAQPQAGLSQANFTLGPVSRSYGGQYRCYGAHNLSSEWSAPSDPLDILIAGQFYDRVSLSVQPGPTVASGENVTLLCQSQGWMQTFLLTKEGAADDPWRLRSTYQSQKYQAEFPMGPVTSAHAGTYRCYGSQSSKPYLLTHPSDPL... | SYDLTQPPSVSVSPGQTARITCSGDSLARQFASWYQQKPGQSPVLLIYKNIERLSAIPERFSGSTSGTSVTLTISGVQAEDEADYFCQSADDSGSYSLFGTGTRVSVLGQPKANPTVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS | 36.594242 | 22.775013 | 427 | 214 | 426 | 214 | 426 | 214 | 103 | mdb1 fab heavy chain | mdb1 fab light chain | homo sapiens | homo sapiens | N.A. | N.A. | N.A. | N.A. | 0 | 0 | 0 | HL | train |
7khf_H_B | 7khf | cryoem structure of lilrb1 d3d4 domain-inserted antibody mdb1 fab in complex with plasmodium rifin (pf3d7_1373400) v2 domain | no | immune system | 2020-10-21 | 2021-03-31 | electron microscopy | 3.54 | N.A. | N.A. | 33790470 | 10.1038/s41586-021-03378-6 | 0 | auth_asym_id | VH+:FabL | IGHV2 | IGLV3 | H | B | QITLKESGPTLVERTQTLTLTCTFSGFSLTTDGLGVGWIRQPPGKALEWLALIYYDDVRRYRPSLKSRLTITKDTSKNRVVLTVTDMDPVDAGTYFCVHASLFNLGSRNVYFRYWGQGTLVSVSSGVSKKPSLSVQPGPIVAPEETLTLQCGSDAGYNRFVLYKDGERDFLQLAGAQPQAGLSQANFTLGPVSRSYGGQYRCYGAHNLSSEWSAPSDPLDILIAGQFYDRVSLSVQPGPTVASGENVTLLCQSQGWMQTFLLTKEGAADDPWRLRSTYQSQKYQAEFPMGPVTSAHAGTYRCYGSQSSKPYLLTHPSDPL... | SYDLTQPPSVSVSPGQTARITCSGDSLARQFASWYQQKPGQSPVLLIYKNIERLSAIPERFSGSTSGTSVTLTISGVQAEDEADYFCQSADDSGSYSLFGTGTRVSVLGQPKANPTVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS | QITLKESGPTLVERTQTLTLTCTFSGFSLTTDGLGVGWIRQPPGKALEWLALIYYDDVRRYRPSLKSRLTITKDTSKNRVVLTVTDMDPVDAGTYFCVHASLFNLGSRNVYFRYWGQGTLVSVSSGVSKKPSLSVQPGPIVAPEETLTLQCGSDAGYNRFVLYKDGERDFLQLAGAQPQAGLSQANFTLGPVSRSYGGQYRCYGAHNLSSEWSAPSDPLDILIAGQFYDRVSLSVQPGPTVASGENVTLLCQSQGWMQTFLLTKEGAADDPWRLRSTYQSQKYQAEFPMGPVTSAHAGTYRCYGSQSSKPYLLTHPSDPL... | SYDLTQPPSVSVSPGQTARITCSGDSLARQFASWYQQKPGQSPVLLIYKNIERLSAIPERFSGSTSGTSVTLTISGVQAEDEADYFCQSADDSGSYSLFGTGTRVSVLGQPKANPTVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS | 36.00967 | 23.231102 | 427 | 214 | 426 | 214 | 426 | 214 | 103 | mdb1 fab heavy chain | mdb1 fab light chain | homo sapiens | homo sapiens | N.A. | N.A. | N.A. | N.A. | 0 | 0 | 0 | HL | train |
7ki1_N | 7ki1 | taspoglutide-bound glucagon-like peptide-1 (glp-1) receptor in complex with gs protein | no | membrane protein | 2020-10-22 | 2021-08-04 | electron microscopy | 2.5 | N.A. | N.A. | 34260945 | 10.1016/j.celrep.2021.109374 | 0 | auth_asym_id | VH | IGHV3 | N.A. | N | N.A. | QVQLQESGGGLVQPGGSLRLSCAASGFTFSNYKMNWVRQAPGKGLEWVSDISQSGASISYTGSVKGRFTISRDNAKNTLYLQMNSLKPEDTAVYYCARCPAPFTRDCFDVTSTTYAYRGQGTQVTVSS | N.A. | QVQLQESGGGLVQPGGSLRLSCAASGFTFSNYKMNWVRQAPGKGLEWVSDISQSGASISYTGSVKGRFTISRDNAKNTLYLQMNSLKPEDTAVYYCARCPAPFTRDCFDVTSTTYAYRGQGTQVTV | N.A. | 13.5447 | 0 | 128 | 0 | 126 | 0 | 126 | 0 | 0 | nb35 | N.A. | homo sapiens | N.A. | A;B | protein;protein | guanine nucleotide-binding protein g(s) subunit alpha isoforms short;guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1 | homo sapiens;homo sapiens | 47;34 | 15;11 | 0.6;0.69 | H_only | train |
7aql_A | 7aql | crystal structure of an anti-plasminogen activator inhibitor-1 (pai-1) scfv antibody fragment (scfv-33h1f7) | no | immune system | 2020-10-22 | 2021-11-03 | x-ray diffraction | 1.8 | 0.223 | 0.186 | N.A. | N.A. | 0 | auth_asym_id | scFv | N.A. | N.A. | A | N.A. | QVQLQQSGAEVVKPGASVKLACTASGFNIKDTYIHWVKQGPEQGLEWIGRIDPANGNTKYDSKFQDKATITADTSSNTAYLHLSSLTSEDTAVYYCVRGDYDYVYFDYWGQGTTVTVSSGGGGSGGGGSGGGGSDIQMTQSPSSLSASLGDRVTISCRASQDISNFLDWYQQKPDGTVKLLIYYTSRLHSGVPSRFSGSGSGTDYSLTISKLEQEDIATYFCQQGNTFPPTFGGGTKLEIKR | N.A. | QVQLQQSGAEVVKPGASVKLACTASGFNIKDTYIHWVKQGPEQGLEWIGRIDPANGNTKYDSKFQDKATITADTSSNTAYLHLSSLTSEDTAVYYCVRGDYDYVYFDYWGQGTTVTVSSGGGGSGGGGSGGGGSDIQMTQSPSSLSASLGDRVTISCRASQDISNFLDWYQQKPDGTVKLLIYYTSRLHSGVPSRFSGSGSGTDYSLTISKLEQEDIATYFCQQGNTFPPTFGGGTKLEIK | N.A. | 17.200851 | 0 | 242 | 0 | 226 | 0 | 241 | 0 | 0 | scfv-33h1f7 | N.A. | mus musculus | N.A. | N.A. | N.A. | N.A. | N.A. | 0 | 0 | 0 | H_only | train |
7aql_B | 7aql | crystal structure of an anti-plasminogen activator inhibitor-1 (pai-1) scfv antibody fragment (scfv-33h1f7) | no | immune system | 2020-10-22 | 2021-11-03 | x-ray diffraction | 1.8 | 0.223 | 0.186 | N.A. | N.A. | 0 | auth_asym_id | scFv | N.A. | N.A. | B | N.A. | QVQLQQSGAEVVKPGASVKLACTASGFNIKDTYIHWVKQGPEQGLEWIGRIDPANGNTKYDSKFQDKATITADTSSNTAYLHLSSLTSEDTAVYYCVRGDYDYVYFDYWGQGTTVTVSSGGGGSGGGGSGGGGSDIQMTQSPSSLSASLGDRVTISCRASQDISNFLDWYQQKPDGTVKLLIYYTSRLHSGVPSRFSGSGSGTDYSLTISKLEQEDIATYFCQQGNTFPPTFGGGTKLEIKR | N.A. | QVQLQQSGAEVVKPGASVKLACTASGFNIKDTYIHWVKQGPEQGLEWIGRIDPANGNTKYDSKFQDKATITADTSSNTAYLHLSSLTSEDTAVYYCVRGDYDYVYFDYWGQGTTVTVSSGGGGSGGGGSGGGGSDIQMTQSPSSLSASLGDRVTISCRASQDISNFLDWYQQKPDGTVKLLIYYTSRLHSGVPSRFSGSGSGTDYSLTISKLEQEDIATYFCQQGNTFPPTFGGGTKLEIK | N.A. | 17.208351 | 0 | 242 | 0 | 225 | 0 | 241 | 0 | 0 | scfv-33h1f7 | N.A. | mus musculus | N.A. | N.A. | N.A. | N.A. | N.A. | 0 | 0 | 0 | H_only | train |
7aql_C | 7aql | crystal structure of an anti-plasminogen activator inhibitor-1 (pai-1) scfv antibody fragment (scfv-33h1f7) | no | immune system | 2020-10-22 | 2021-11-03 | x-ray diffraction | 1.8 | 0.223 | 0.186 | N.A. | N.A. | 0 | auth_asym_id | scFv | N.A. | N.A. | C | N.A. | QVQLQQSGAEVVKPGASVKLACTASGFNIKDTYIHWVKQGPEQGLEWIGRIDPANGNTKYDSKFQDKATITADTSSNTAYLHLSSLTSEDTAVYYCVRGDYDYVYFDYWGQGTTVTVSSGGGGSGGGGSGGGGSDIQMTQSPSSLSASLGDRVTISCRASQDISNFLDWYQQKPDGTVKLLIYYTSRLHSGVPSRFSGSGSGTDYSLTISKLEQEDIATYFCQQGNTFPPTFGGGTKLEIKR | N.A. | QVQLQQSGAEVVKPGASVKLACTASGFNIKDTYIHWVKQGPEQGLEWIGRIDPANGNTKYDSKFQDKATITADTSSNTAYLHLSSLTSEDTAVYYCVRGDYDYVYFDYWGQGTTVTVSSGGGGSGGGGSGGGGSDIQMTQSPSSLSASLGDRVTISCRASQDISNFLDWYQQKPDGTVKLLIYYTSRLHSGVPSRFSGSGSGTDYSLTISKLEQEDIATYFCQQGNTFPPTFGGGTKLEIK | N.A. | 17.160189 | 0 | 242 | 0 | 226 | 0 | 241 | 0 | 0 | scfv-33h1f7 | N.A. | mus musculus | N.A. | N.A. | N.A. | N.A. | N.A. | 0 | 0 | 0 | H_only | train |
7aql_D | 7aql | crystal structure of an anti-plasminogen activator inhibitor-1 (pai-1) scfv antibody fragment (scfv-33h1f7) | no | immune system | 2020-10-22 | 2021-11-03 | x-ray diffraction | 1.8 | 0.223 | 0.186 | N.A. | N.A. | 0 | auth_asym_id | scFv | N.A. | N.A. | D | N.A. | QVQLQQSGAEVVKPGASVKLACTASGFNIKDTYIHWVKQGPEQGLEWIGRIDPANGNTKYDSKFQDKATITADTSSNTAYLHLSSLTSEDTAVYYCVRGDYDYVYFDYWGQGTTVTVSSGGGGSGGGGSGGGGSDIQMTQSPSSLSASLGDRVTISCRASQDISNFLDWYQQKPDGTVKLLIYYTSRLHSGVPSRFSGSGSGTDYSLTISKLEQEDIATYFCQQGNTFPPTFGGGTKLEIKR | N.A. | QVQLQQSGAEVVKPGASVKLACTASGFNIKDTYIHWVKQGPEQGLEWIGRIDPANGNTKYDSKFQDKATITADTSSNTAYLHLSSLTSEDTAVYYCVRGDYDYVYFDYWGQGTTVTVSSGGGGSGGGGSGGGGSDIQMTQSPSSLSASLGDRVTISCRASQDISNFLDWYQQKPDGTVKLLIYYTSRLHSGVPSRFSGSGSGTDYSLTISKLEQEDIATYFCQQGNTFPPTFGGGTKLEIKR | N.A. | 17.428926 | 0 | 242 | 0 | 227 | 0 | 242 | 0 | 0 | scfv-33h1f7 | N.A. | mus musculus | N.A. | N.A. | N.A. | N.A. | N.A. | 0 | 0 | 0 | H_only | train |
7dc7_A_B | 7dc7 | crystal structure of d12 fab-atp complex | no | immune system | 2020-10-23 | 2021-01-13 | x-ray diffraction | 1.77 | 0.22 | 0.177 | 33357423 | 10.1016/j.celrep.2020.108542 | 0 | auth_asym_id | FabH:FabL | IGHV3 | IGLV2 | A | B | QVQLQESGGDLVKPGGSLRLSCAASGFTFNTYTMNWVRQAPGKGLEWLSSISSRSNYINYADSVKGRFTISRDNAKNSLYLQMNSLRAEDTAVYYCARFGRKGDLNWVFDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDK | QSALTQPPSASGSPGQSVTISCTGTSSDVGGYNYVSWYQQHPGKAPKLMIYEVSKRPSGVPDRFSGSKSGNTASLTVSGLQAEDEADYFCSSYAGSNNVVFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS | VQLQESGGDLVKPGGSLRLSCAASGFTFNTYTMNWVRQAPGKGLEWLSSISSRSNYINYADSVKGRFTISRDNAKNSLYLQMNSLRAEDTAVYYCARFGRKGDLNWVFDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEP | QSALTQPPSASGSPGQSVTISCTGTSSDVGGYNYVSWYQQHPGKAPKLMIYEVSKRPSGVPDRFSGSKSGNTASLTVSGLQAEDEADYFCSSYAGSNNVVFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPT | 20.992197 | 23.80243 | 227 | 216 | 221 | 213 | 221 | 213 | 96 | d12 fab heavy chain | d12 fab light chain | homo sapiens | homo sapiens | N.A. | N.A. | N.A. | N.A. | 0 | 0 | 0 | HL | train |
7ki4_H_L | 7ki4 | structure of the niv f glycoprotein in complex with the 12b2 neutralizing antibody | no | viral protein/immune system | 2020-10-23 | 2021-05-05 | electron microscopy | 2.9 | N.A. | N.A. | 33927387 | 10.1038/s41594-021-00584-8 | 0 | auth_asym_id | VH:VL | IGHV4 | IGKV1 | H | L | QVQLKESGPGLVAPSQSLSITCTVSGFSLASYGVHWVRQPPGKGLEWLGVIWTGGSTNYNSALMSRLSINRDNSKSQVFLKLNSLQTDDTAIYYCARDRGYGYGGFAYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVPRDCGCKPCICTVPEVSSVFIFPPKPKDVLTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTQPREEQFNSTFRSVSELPIMHQDWLNGKEFKCRVN... | DIQMTQSPASLSASVGETVTITCRASENIYSYLAWYQHKQGKSPQLLVYNAKSLAEGVPSRFSGSGSGTQFSLKINSLQPEDFGSYYCQHHYGTPWTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC | QVQLKESGPGLVAPSQSLSITCTVSGFSLASYGVHWVRQPPGKGLEWLGVIWTGGSTNYNSALMSRLSINRDNSKSQVFLKLNSLQTDDTAIYYCARDRGYGYGGFAYWGQGTLVTV | DIQMTQSPASLSASVGETVTITCRASENIYSYLAWYQHKQGKSPQLLVYNAKSLAEGVPSRFSGSGSGTQFSLKINSLQPEDFGSYYCQHHYGTPWTFGGGTKLE | 13.483222 | 13.135696 | 443 | 214 | 117 | 105 | 117 | 105 | 44 | 12b2 heavy chain | 12b2 fab light chain | mus musculus | mus musculus | A;B | protein;protein | fusion glycoprotein f0;fusion glycoprotein f0 | nipah virus;nipah virus | 37;28 | 12;14 | 0.75;0.93 | HL | train |
7ki4_G_F | 7ki4 | structure of the niv f glycoprotein in complex with the 12b2 neutralizing antibody | no | viral protein/immune system | 2020-10-23 | 2021-05-05 | electron microscopy | 2.9 | N.A. | N.A. | 33927387 | 10.1038/s41594-021-00584-8 | 0 | auth_asym_id | VH:VL | IGHV4 | IGKV1 | G | F | QVQLKESGPGLVAPSQSLSITCTVSGFSLASYGVHWVRQPPGKGLEWLGVIWTGGSTNYNSALMSRLSINRDNSKSQVFLKLNSLQTDDTAIYYCARDRGYGYGGFAYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVPRDCGCKPCICTVPEVSSVFIFPPKPKDVLTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTQPREEQFNSTFRSVSELPIMHQDWLNGKEFKCRVN... | DIQMTQSPASLSASVGETVTITCRASENIYSYLAWYQHKQGKSPQLLVYNAKSLAEGVPSRFSGSGSGTQFSLKINSLQPEDFGSYYCQHHYGTPWTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC | QVQLKESGPGLVAPSQSLSITCTVSGFSLASYGVHWVRQPPGKGLEWLGVIWTGGSTNYNSALMSRLSINRDNSKSQVFLKLNSLQTDDTAIYYCARDRGYGYGGFAYWGQGTLVTV | DIQMTQSPASLSASVGETVTITCRASENIYSYLAWYQHKQGKSPQLLVYNAKSLAEGVPSRFSGSGSGTQFSLKINSLQPEDFGSYYCQHHYGTPWTFGGGTKLE | 13.483206 | 13.135677 | 443 | 214 | 117 | 105 | 117 | 105 | 44 | 12b2 heavy chain | 12b2 fab light chain | mus musculus | mus musculus | A;E | protein;protein | fusion glycoprotein f0;fusion glycoprotein f0 | nipah virus;nipah virus | 28;37 | 14;12 | 0.93;0.75 | HL | train |
7ki4_D_C | 7ki4 | structure of the niv f glycoprotein in complex with the 12b2 neutralizing antibody | no | viral protein/immune system | 2020-10-23 | 2021-05-05 | electron microscopy | 2.9 | N.A. | N.A. | 33927387 | 10.1038/s41594-021-00584-8 | 0 | auth_asym_id | VH:VL | IGHV4 | IGKV1 | D | C | QVQLKESGPGLVAPSQSLSITCTVSGFSLASYGVHWVRQPPGKGLEWLGVIWTGGSTNYNSALMSRLSINRDNSKSQVFLKLNSLQTDDTAIYYCARDRGYGYGGFAYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVPRDCGCKPCICTVPEVSSVFIFPPKPKDVLTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTQPREEQFNSTFRSVSELPIMHQDWLNGKEFKCRVN... | DIQMTQSPASLSASVGETVTITCRASENIYSYLAWYQHKQGKSPQLLVYNAKSLAEGVPSRFSGSGSGTQFSLKINSLQPEDFGSYYCQHHYGTPWTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC | QVQLKESGPGLVAPSQSLSITCTVSGFSLASYGVHWVRQPPGKGLEWLGVIWTGGSTNYNSALMSRLSINRDNSKSQVFLKLNSLQTDDTAIYYCARDRGYGYGGFAYWGQGTLVTV | DIQMTQSPASLSASVGETVTITCRASENIYSYLAWYQHKQGKSPQLLVYNAKSLAEGVPSRFSGSGSGTQFSLKINSLQPEDFGSYYCQHHYGTPWTFGGGTKLE | 13.483209 | 13.135695 | 443 | 214 | 117 | 105 | 117 | 105 | 44 | 12b2 heavy chain | 12b2 fab light chain | mus musculus | mus musculus | B;E | protein;protein | fusion glycoprotein f0;fusion glycoprotein f0 | nipah virus;nipah virus | 37;28 | 12;14 | 0.75;0.93 | HL | train |
7aqx_C | 7aqx | co-crystal structure of variant surface glycoprotein vsg2 in complex with nanobody vsg2(nb9) | no | membrane protein | 2020-10-23 | 2021-11-03 | x-ray diffraction | 1.5 | 0.192 | 0.164 | 34731611 | 10.1016/j.celrep.2021.109923 | 0 | auth_asym_id | VHH | IGHV3 | N.A. | C | N.A. | QVQLQESGGGLVQAGGSLRLSCTTSGLTFSNYAFSWFRQAPGEEREFVGAISWSGGRTDYADSVKGRFTISRDNAKNTFYLQMNSLKTEDTAVYYCAADLLGEGSRRSEYEYWGQGTQVTVSSAAAYPYDVPDYGSHHHHHH | N.A. | QVQLQESGGGLVQAGGSLRLSCTTSGLTFSNYAFSWFRQAPGEEREFVGAISWSGGRTDYADSVKGRFTISRDNAKNTFYLQMNSLKTEDTAVYYCAADLLGEGSRRSEYEYWGQGTQVTV | N.A. | 13.165409 | 0 | 142 | 0 | 116 | 0 | 121 | 0 | 0 | nanobody vsg2(nb9) | N.A. | lama glama | N.A. | A | protein | variant surface glycoprotein mitat 1.2 | trypanosoma brucei brucei | 46 | 15 | 0.88 | H_only | train |
7aqx_D | 7aqx | co-crystal structure of variant surface glycoprotein vsg2 in complex with nanobody vsg2(nb9) | no | membrane protein | 2020-10-23 | 2021-11-03 | x-ray diffraction | 1.5 | 0.192 | 0.164 | 34731611 | 10.1016/j.celrep.2021.109923 | 0 | auth_asym_id | VHH | IGHV3 | N.A. | D | N.A. | QVQLQESGGGLVQAGGSLRLSCTTSGLTFSNYAFSWFRQAPGEEREFVGAISWSGGRTDYADSVKGRFTISRDNAKNTFYLQMNSLKTEDTAVYYCAADLLGEGSRRSEYEYWGQGTQVTVSSAAAYPYDVPDYGSHHHHHH | N.A. | VQLQESGGGLVQAGGSLRLSCTTSGLTFSNYAFSWFRQAPGEEREFVGAISWSGGRTDYADSVKGRFTISRDNAKNTFYLQMNSLKTEDTAVYYCAADLLGEGSRRSEYEYWGQGTQ | N.A. | 12.203835 | 0 | 142 | 0 | 99 | 0 | 117 | 0 | 0 | nanobody vsg2(nb9) | N.A. | lama glama | N.A. | B | protein | variant surface glycoprotein mitat 1.2 | trypanosoma brucei brucei | 42 | 15 | 0.94 | H_only | train |
7aqy_D | 7aqy | co-crystal structure of variant surface glycoprotein vsg2 in complex with nanobody vsg2(nb11) | no | membrane protein | 2020-10-23 | 2021-11-03 | x-ray diffraction | 1.9 | 0.241 | 0.209 | 34731611 | 10.1016/j.celrep.2021.109923 | 0 | auth_asym_id | VHH | IGHV3 | N.A. | D | N.A. | QVQLQESGGGLVQAGGSLTLSCAVSGLTFSNYAMGWFRQAPGKEREFVAAITWDGGNTYYTDSVKGRFTISRDNAKNTVFLQMNSLKPEDTAVYYCAAKLLGSSRYELALAGYDYWGQGTQVTVSSHHHHHH | N.A. | QVQLQESGGGLVQAGGSLTLSCAVSGLTFSNYAMGWFRQAPGKEREFVAAITWDGGNTYYTDSVKGRFTISRDNAKNTVFLQMNSLKPEDTAVYYCAAKLLGSSRYELALAGYDYWGQGTQVTVSSH | N.A. | 13.727195 | 0 | 132 | 0 | 127 | 0 | 127 | 0 | 0 | nanobody vsg2(nb11) | N.A. | lama glama | N.A. | A | protein | variant surface glycoprotein mitat 1.2 | trypanosoma brucei brucei | 56 | 19 | 0.86 | H_only | train |
7aqy_C | 7aqy | co-crystal structure of variant surface glycoprotein vsg2 in complex with nanobody vsg2(nb11) | no | membrane protein | 2020-10-23 | 2021-11-03 | x-ray diffraction | 1.9 | 0.241 | 0.209 | 34731611 | 10.1016/j.celrep.2021.109923 | 0 | auth_asym_id | VHH | IGHV3 | N.A. | C | N.A. | QVQLQESGGGLVQAGGSLTLSCAVSGLTFSNYAMGWFRQAPGKEREFVAAITWDGGNTYYTDSVKGRFTISRDNAKNTVFLQMNSLKPEDTAVYYCAAKLLGSSRYELALAGYDYWGQGTQVTVSSHHHHHH | N.A. | VQLQESGGGLVQAGGSLTLSCAVSGLTFSNYAMGWFRQAPGKEREFVAAITWDGGNTYYTDSVKGRFTISRDNAKNTVFLQMNSLKPEDTAVYYCAAKLLGSSRYELALAGYDYWGQGTQVTVSSH | N.A. | 13.580683 | 0 | 132 | 0 | 124 | 0 | 126 | 0 | 0 | nanobody vsg2(nb11) | N.A. | lama glama | N.A. | B | protein | variant surface glycoprotein mitat 1.2 | trypanosoma brucei brucei | 48 | 18 | 0.95 | H_only | train |
7aqz_D | 7aqz | co-crystal structure of variant surface glycoprotein vsg2 in complex with nanobody vsg2(nb14) | no | membrane protein | 2020-10-23 | 2021-11-03 | x-ray diffraction | 1.3 | 0.172 | 0.151 | 34731611 | 10.1016/j.celrep.2021.109923 | 0 | auth_asym_id | VHH | IGHV3 | N.A. | D | N.A. | QVQLQESGGGLVQAGGSLRLSCEASGLTFSNYAMAWFRQAPEKEREFVAGISWTGSRTYYADSVRGRFTTSRDGHKNTVYLQMNDLKPEDTAVYLCAADLLGSGKDGTSVYEYWGQGTQVTVSSHHHHHH | N.A. | QVQLQESGGGLVQAGGSLRLSCEASGLTFSNYAMAWFRQAPEKEREFVAGISWTGSRTYYADSVRGRFTTSRDGHKNTVYLQMNDLKPEDTAVYLCAADLLGSGKDGTSVYEYWGQGTQ | N.A. | 12.151132 | 0 | 130 | 0 | 93 | 0 | 119 | 0 | 0 | nanobody vsg2(nb14) | N.A. | lama glama | N.A. | A | protein | variant surface glycoprotein mitat 1.2 | trypanosoma brucei brucei | 51 | 18 | 0.9 | H_only | train |
7aqz_C | 7aqz | co-crystal structure of variant surface glycoprotein vsg2 in complex with nanobody vsg2(nb14) | no | membrane protein | 2020-10-23 | 2021-11-03 | x-ray diffraction | 1.3 | 0.172 | 0.151 | 34731611 | 10.1016/j.celrep.2021.109923 | 0 | auth_asym_id | VHH | IGHV3 | N.A. | C | N.A. | QVQLQESGGGLVQAGGSLRLSCEASGLTFSNYAMAWFRQAPEKEREFVAGISWTGSRTYYADSVRGRFTTSRDGHKNTVYLQMNDLKPEDTAVYLCAADLLGSGKDGTSVYEYWGQGTQVTVSSHHHHHH | N.A. | QVQLQESGGGLVQAGGSLRLSCEASGLTFSNYAMAWFRQAPEKEREFVAGISWTGSRTYYADSVRGRFTTSRDGHKNTVYLQMNDLKPEDTAVYLCAADLLGSGKDGTSVYEYWGQGTQVTVSSHH | N.A. | 13.959697 | 0 | 130 | 0 | 124 | 0 | 126 | 0 | 0 | nanobody vsg2(nb14) | N.A. | lama glama | N.A. | B | protein | variant surface glycoprotein mitat 1.2 | trypanosoma brucei brucei | 43 | 16 | 0.89 | H_only | train |
7dcc_D_H | 7dcc | s-3c1-f3b structure, all the three rbds are in the up conformation and each of them associates with a 3c1 fab | yes | viral protein | 2020-10-24 | 2020-12-02 | electron microscopy | 4.3 | N.A. | N.A. | 33431876 | 10.1038/s41467-020-20465-w | 0 | auth_asym_id | FabH:FabL | IGHV4 | IGKV3 | D | H | EVQLQESGPSLVKPSQTLSLTCSVTGDSITNGYWNWIRKFPGNKLEYMGYISYSGSTYYSPSLKSRISITRDTSKNQHYLQLNSVTSEDTATYYCASDYHGSKYYFDYWGQGTTLTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVPRDCG | DIVMTQSHKFMSTSVGHRVSITCKASQDVGNDVAWYQQKPGQSPKLLIYWASTRHTGVPDRFTGSGSGTDFTLTISNVQSEDLADYFCQQYNRYPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC | VQLQESGPSLVKPSQTLSLTCSVTGDSITNGYWNWIRKFPGNKLEYMGYISYSGSTYYSPSLKSRISITRDTSKNQHYLQLNSVTSEDTATYYCASDYHGSKYYFDYWGQGTTLTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVPRDCG | DIVMTQSHKFMSTSVGHRVSITCKASQDVGNDVAWYQQKPGQSPKLLIYWASTRHTGVPDRFTGSGSGTDFTLTISNVQSEDLADYFCQQYNRYPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNE | 21.642551 | 22.925177 | 222 | 214 | 221 | 213 | 221 | 213 | 111 | the heavy chain of 3c1 fab | the light chain of 3c1 fab | mus musculus | mus musculus | E | protein | spike glycoprotein | severe acute respiratory syndrome coronavirus 2 | 66 | 20 | 0.62 | HL | train |
7dcc_B_M | 7dcc | s-3c1-f3b structure, all the three rbds are in the up conformation and each of them associates with a 3c1 fab | yes | viral protein | 2020-10-24 | 2020-12-02 | electron microscopy | 4.3 | N.A. | N.A. | 33431876 | 10.1038/s41467-020-20465-w | 0 | auth_asym_id | FabH:FabL | IGHV4 | IGKV3 | B | M | EVQLQESGPSLVKPSQTLSLTCSVTGDSITNGYWNWIRKFPGNKLEYMGYISYSGSTYYSPSLKSRISITRDTSKNQHYLQLNSVTSEDTATYYCASDYHGSKYYFDYWGQGTTLTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVPRDCG | DIVMTQSHKFMSTSVGHRVSITCKASQDVGNDVAWYQQKPGQSPKLLIYWASTRHTGVPDRFTGSGSGTDFTLTISNVQSEDLADYFCQQYNRYPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC | VQLQESGPSLVKPSQTLSLTCSVTGDSITNGYWNWIRKFPGNKLEYMGYISYSGSTYYSPSLKSRISITRDTSKNQHYLQLNSVTSEDTATYYCASDYHGSKYYFDYWGQGTTLTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVPRDCG | DIVMTQSHKFMSTSVGHRVSITCKASQDVGNDVAWYQQKPGQSPKLLIYWASTRHTGVPDRFTGSGSGTDFTLTISNVQSEDLADYFCQQYNRYPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNE | 22.965612 | 22.700148 | 222 | 214 | 221 | 213 | 221 | 213 | 111 | the heavy chain of 3c1 fab | the light chain of 3c1 fab | mus musculus | mus musculus | I | protein | spike glycoprotein | severe acute respiratory syndrome coronavirus 2 | 67 | 19 | 0.58 | HL | train |
7dcc_A_F | 7dcc | s-3c1-f3b structure, all the three rbds are in the up conformation and each of them associates with a 3c1 fab | yes | viral protein | 2020-10-24 | 2020-12-02 | electron microscopy | 4.3 | N.A. | N.A. | 33431876 | 10.1038/s41467-020-20465-w | 0 | auth_asym_id | FabH:FabL | IGHV4 | IGKV3 | A | F | EVQLQESGPSLVKPSQTLSLTCSVTGDSITNGYWNWIRKFPGNKLEYMGYISYSGSTYYSPSLKSRISITRDTSKNQHYLQLNSVTSEDTATYYCASDYHGSKYYFDYWGQGTTLTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVPRDCG | DIVMTQSHKFMSTSVGHRVSITCKASQDVGNDVAWYQQKPGQSPKLLIYWASTRHTGVPDRFTGSGSGTDFTLTISNVQSEDLADYFCQQYNRYPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC | VQLQESGPSLVKPSQTLSLTCSVTGDSITNGYWNWIRKFPGNKLEYMGYISYSGSTYYSPSLKSRISITRDTSKNQHYLQLNSVTSEDTATYYCASDYHGSKYYFDYWGQGTTLTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVPRDCG | DIVMTQSHKFMSTSVGHRVSITCKASQDVGNDVAWYQQKPGQSPKLLIYWASTRHTGVPDRFTGSGSGTDFTLTISNVQSEDLADYFCQQYNRYPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNE | 21.975138 | 23.164299 | 222 | 214 | 221 | 213 | 221 | 213 | 100 | the heavy chain of 3c1 fab | the light chain of 3c1 fab | mus musculus | mus musculus | K | protein | spike glycoprotein | severe acute respiratory syndrome coronavirus 2 | 69 | 21 | 0.58 | HL | train |
7kjh_A | 7kjh | plasmodium falciparum protein pf12p bound to nanobody b9 | no | unknown function | 2020-10-26 | 2021-02-03 | x-ray diffraction | 2 | 0.217 | 0.18 | 33480416 | 10.1042/BCJ20200415 | 0 | auth_asym_id | VHH | IGHV3 | N.A. | A | N.A. | QVQLQESGGGLVQAGGSLRLSCTASGRTFSNTVMGWFRQAPGKEREFLAHILWSGGLAYYADSVKGRFTISRDNAKNIVYLQMNSLKPEDTAVYYCAARDFGFGNNYDYWGQGTQVTVSSHHHHHH | N.A. | QVQLQESGGGLVQAGGSLRLSCTASGRTFSNTVMGWFRQAPGKEREFLAHILWSGGLAYYADSVKGRFTISRDNAKNIVYLQMNSLKPEDTAVYYCAARDFGFGNNYDYWGQGTQVTVSS | N.A. | 13.717404 | 0 | 126 | 0 | 120 | 0 | 120 | 0 | 0 | nanobody b9 | N.A. | vicugna pacos | N.A. | C | protein | surface protein p12p | plasmodium falciparum | 49 | 17 | 0.77 | H_only | train |
7kjh_B | 7kjh | plasmodium falciparum protein pf12p bound to nanobody b9 | no | unknown function | 2020-10-26 | 2021-02-03 | x-ray diffraction | 2 | 0.217 | 0.18 | 33480416 | 10.1042/BCJ20200415 | 0 | auth_asym_id | VHH | IGHV3 | N.A. | B | N.A. | QVQLQESGGGLVQAGGSLRLSCTASGRTFSNTVMGWFRQAPGKEREFLAHILWSGGLAYYADSVKGRFTISRDNAKNIVYLQMNSLKPEDTAVYYCAARDFGFGNNYDYWGQGTQVTVSSHHHHHH | N.A. | QVQLQESGGGLVQAGGSLRLSCTASGRTFSNTVMGWFRQAPGKEREFLAHILWSGGLAYYADSVKGRFTISRDNAKNIVYLQMNSLKPEDTAVYYCAARDFGFGNNYDYWGQGTQVTVSSHHHHHH | N.A. | 15.431301 | 0 | 126 | 0 | 126 | 0 | 126 | 0 | 0 | nanobody b9 | N.A. | vicugna pacos | N.A. | D | protein | surface protein p12p | plasmodium falciparum | 48 | 16 | 0.76 | H_only | train |
7kji_A | 7kji | plasmodium falciparum protein pf12p bound to nanobody d9 | no | unknown function | 2020-10-26 | 2021-02-03 | x-ray diffraction | 3.25 | 0.285 | 0.245 | 33480416 | 10.1042/BCJ20200415 | 0 | auth_asym_id | VHH | IGHV3 | N.A. | A | N.A. | QVQLQESGGGLVQPGGSLRLSCAASGIIFSSHVMGWYRQAPGKQRELVASFSGDTGAKYADSVKGRFIIRRENAKNMVTLYLQMNSLKPEDTAAYYCHVDRFGTEYWGQGTQVTVSSHHHHHH | N.A. | QVQLQESGGGLVQPGGSLRLSCAASGIIFSSHVMGWYRQAPGKQRELVASFSGDTGAKYADSVKGRFIIRRENAKNMVTLYLQMNSLKPEDTAAYYCHVDRFGTEYWGQGTQVTVSS | N.A. | 13.802139 | 0 | 123 | 0 | 117 | 0 | 117 | 0 | 0 | nanobody d9 | N.A. | vicugna pacos | N.A. | B | protein | surface protein p12p | plasmodium falciparum | 42 | 13 | 0.72 | H_only | train |
7dce_H_L | 7dce | cryo-em structure of human xkr8-basigin complex bound to fab fragment | yes | transport protein | 2020-10-26 | 2021-10-20 | electron microscopy | 3.8 | N.A. | N.A. | 34625749 | 10.1038/s41594-021-00665-8 | 0 | auth_asym_id | FabH:FabL | IGHV3 | IGKV1 | H | L | QSVEESGGRLVTPGTPLTLTCTVSGFSLSDYAMNWVRQAPGKGLEWIGIIYASGSRYYASWAKGRFTISKTSTTVDLKITSPTTEDTATYFCARYYAGSDIWGPGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDK | ADVVMTQTPSSVSAAVGGTVTINCQASQSISAYLAWYQQKPGQPPKLLIYDASDLASGVSSRFKGSGSGTQFTLTISALECADAATYYCQSYYAIITYGAAFGGGTEVVVKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDCTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | SVEESGGRLVTPGTPLTLTCTVSGFSLSDYAMNWVRQAPGKGLEWIGIIYASGSRYYASWAKGRFTISKTSTTVDLKITSPTTEDTATYFCARYYAGSDIWGPGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKS | ADVVMTQTPSSVSAAVGGTVTINCQASQSISAYLAWYQQKPGQPPKLLIYDASDLASGVSSRFKGSGSGTQFTLTISALECADAATYYCQSYYAIITYGAAFGGGTEVVVKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDCTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE | 20.673515 | 23.228905 | 217 | 218 | 208 | 217 | 213 | 217 | 98 | heavy chain of fab fragment | light chain of fab fragment | oryctolagus cuniculus | oryctolagus cuniculus | B | protein | isoform 2 of basigin | homo sapiens | 48 | 18 | 0.75 | HL | train |
7kkk_B | 7kkk | sars-cov-2 spike in complex with neutralizing nanobody nb6 | yes | viral protein/immune system | 2020-10-27 | 2020-11-11 | electron microscopy | 3.03 | N.A. | N.A. | 33154106 | 10.1126/science.abe3255 | 0 | auth_asym_id | VHH | IGHV3 | N.A. | B | N.A. | QVQLVESGGGLVQAGGSLRLSCAASGIIFGRNAMGWYRQAPGKERELVAGITRRGSITYYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCAADPASPAPGDYWGQGTQVTVSS | N.A. | VQLVESGGGLVQAGGSLRLSCAASGIIFGRNAMGWYRQAPGKERELVAGITRRGSITYYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCAADPASPAPGDYWGQGTQVTVSS | N.A. | 13.407541 | 0 | 119 | 0 | 118 | 0 | 118 | 0 | 0 | synthetic nanobody nb6 | N.A. | synthetic construct | N.A. | A;C | protein;protein | spike glycoprotein;spike glycoprotein | severe acute respiratory syndrome coronavirus 2;severe acute respiratory syndrome coronavirus 2 | 42;19 | 12;7 | 0.67;0.88 | H_only | train |
7kkk_F | 7kkk | sars-cov-2 spike in complex with neutralizing nanobody nb6 | yes | viral protein/immune system | 2020-10-27 | 2020-11-11 | electron microscopy | 3.03 | N.A. | N.A. | 33154106 | 10.1126/science.abe3255 | 0 | auth_asym_id | VHH | IGHV3 | N.A. | F | N.A. | QVQLVESGGGLVQAGGSLRLSCAASGIIFGRNAMGWYRQAPGKERELVAGITRRGSITYYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCAADPASPAPGDYWGQGTQVTVSS | N.A. | VQLVESGGGLVQAGGSLRLSCAASGIIFGRNAMGWYRQAPGKERELVAGITRRGSITYYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCAADPASPAPGDYWGQGTQVTVSS | N.A. | 13.404347 | 0 | 119 | 0 | 118 | 0 | 118 | 0 | 0 | synthetic nanobody nb6 | N.A. | synthetic construct | N.A. | A;E | protein;protein | spike glycoprotein;spike glycoprotein | severe acute respiratory syndrome coronavirus 2;severe acute respiratory syndrome coronavirus 2 | 19;41 | 7;12 | 0.88;0.67 | H_only | train |
7kkk_D | 7kkk | sars-cov-2 spike in complex with neutralizing nanobody nb6 | yes | viral protein/immune system | 2020-10-27 | 2020-11-11 | electron microscopy | 3.03 | N.A. | N.A. | 33154106 | 10.1126/science.abe3255 | 0 | auth_asym_id | VHH | IGHV3 | N.A. | D | N.A. | QVQLVESGGGLVQAGGSLRLSCAASGIIFGRNAMGWYRQAPGKERELVAGITRRGSITYYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCAADPASPAPGDYWGQGTQVTVSS | N.A. | VQLVESGGGLVQAGGSLRLSCAASGIIFGRNAMGWYRQAPGKERELVAGITRRGSITYYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCAADPASPAPGDYWGQGTQVTVSS | N.A. | 13.41418 | 0 | 119 | 0 | 118 | 0 | 118 | 0 | 0 | synthetic nanobody nb6 | N.A. | synthetic construct | N.A. | C;E | protein;protein | spike glycoprotein;spike glycoprotein | severe acute respiratory syndrome coronavirus 2;severe acute respiratory syndrome coronavirus 2 | 41;19 | 12;7 | 0.67;0.88 | H_only | train |
7kkl_B | 7kkl | sars-cov-2 spike in complex with neutralizing nanobody mnb6 | yes | viral protein/immune system | 2020-10-27 | 2020-11-11 | electron microscopy | 2.85 | N.A. | N.A. | 33154106 | 10.1126/science.abe3255 | 0 | auth_asym_id | VHH | IGHV3 | N.A. | B | N.A. | QVQLVESGGGLVQAGGSLRLSCAASGYIFGRNAMGWYRQAPGKERELVAGITRRGSITYYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCAADPASPAYGDYWGQGTQVTVSSHHHHHH | N.A. | VQLVESGGGLVQAGGSLRLSCAASGYIFGRNAMGWYRQAPGKERELVAGITRRGSITYYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCAADPASPAYGDYWGQGTQVTVSS | N.A. | 13.508414 | 0 | 125 | 0 | 118 | 0 | 118 | 0 | 0 | synthetic nanobody mnb6 | N.A. | synthetic construct | N.A. | A | protein | spike glycoprotein | severe acute respiratory syndrome coronavirus 2 | 45 | 14 | 0.64 | H_only | train |
7kkl_E | 7kkl | sars-cov-2 spike in complex with neutralizing nanobody mnb6 | yes | viral protein/immune system | 2020-10-27 | 2020-11-11 | electron microscopy | 2.85 | N.A. | N.A. | 33154106 | 10.1126/science.abe3255 | 0 | auth_asym_id | VHH | IGHV3 | N.A. | E | N.A. | QVQLVESGGGLVQAGGSLRLSCAASGYIFGRNAMGWYRQAPGKERELVAGITRRGSITYYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCAADPASPAYGDYWGQGTQVTVSSHHHHHH | N.A. | VQLVESGGGLVQAGGSLRLSCAASGYIFGRNAMGWYRQAPGKERELVAGITRRGSITYYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCAADPASPAYGDYWGQGTQVTVSS | N.A. | 13.516239 | 0 | 125 | 0 | 118 | 0 | 118 | 0 | 0 | synthetic nanobody mnb6 | N.A. | synthetic construct | N.A. | C | protein | spike glycoprotein | severe acute respiratory syndrome coronavirus 2 | 44 | 14 | 0.67 | H_only | train |
7kkl_F | 7kkl | sars-cov-2 spike in complex with neutralizing nanobody mnb6 | yes | viral protein/immune system | 2020-10-27 | 2020-11-11 | electron microscopy | 2.85 | N.A. | N.A. | 33154106 | 10.1126/science.abe3255 | 0 | auth_asym_id | VHH | IGHV3 | N.A. | F | N.A. | QVQLVESGGGLVQAGGSLRLSCAASGYIFGRNAMGWYRQAPGKERELVAGITRRGSITYYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCAADPASPAYGDYWGQGTQVTVSSHHHHHH | N.A. | VQLVESGGGLVQAGGSLRLSCAASGYIFGRNAMGWYRQAPGKERELVAGITRRGSITYYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCAADPASPAYGDYWGQGTQVTVSS | N.A. | 13.505118 | 0 | 125 | 0 | 118 | 0 | 118 | 0 | 0 | synthetic nanobody mnb6 | N.A. | synthetic construct | N.A. | D | protein | spike glycoprotein | severe acute respiratory syndrome coronavirus 2 | 45 | 14 | 0.64 | H_only | train |
7kkj_A | 7kkj | structure of anti-sars-cov-2 spike nanobody mnb6 | no | immune system | 2020-10-27 | 2020-11-25 | x-ray diffraction | 2.05 | 0.247 | 0.212 | 33154106 | 10.1126/science.abe3255 | 0 | auth_asym_id | VHH | IGHV3 | N.A. | A | N.A. | QVQLVESGGGLVQAGGSLRLSCAASGYIFGRNAMGWYRQAPGKERELVAGITRRGSITYYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCAADPASPAYGDYWGQGTQVTVSSHHHHHH | N.A. | QVQLVESGGGLVQAGGSLRLSCAASGYIFGRNAMGWYRQAPGKERELVAGITRRGSITYYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCAADPASPAYGDYWGQGTQVTVS | N.A. | 13.803906 | 0 | 125 | 0 | 118 | 0 | 118 | 0 | 0 | synthetic nanobody mnb6 | N.A. | synthetic construct | N.A. | N.A. | N.A. | N.A. | N.A. | 0 | 0 | 0 | H_only | train |
7kkj_C | 7kkj | structure of anti-sars-cov-2 spike nanobody mnb6 | no | immune system | 2020-10-27 | 2020-11-25 | x-ray diffraction | 2.05 | 0.247 | 0.212 | 33154106 | 10.1126/science.abe3255 | 0 | auth_asym_id | VHH | IGHV3 | N.A. | C | N.A. | QVQLVESGGGLVQAGGSLRLSCAASGYIFGRNAMGWYRQAPGKERELVAGITRRGSITYYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCAADPASPAYGDYWGQGTQVTVSSHHHHHH | N.A. | QVQLVESGGGLVQAGGSLRLSCAASGYIFGRNAMGWYRQAPGKERELVAGITRRGSITYYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCAADPASPAYGDYWGQGTQVTVSS | N.A. | 13.896829 | 0 | 125 | 0 | 119 | 0 | 119 | 0 | 0 | synthetic nanobody mnb6 | N.A. | synthetic construct | N.A. | N.A. | N.A. | N.A. | N.A. | 0 | 0 | 0 | H_only | train |
7dcx_A_F | 7dcx | s-3c1-f3a structure, two rbds are up and one rbd is down, each rbd binds with a 3c1 fab. | yes | viral protein | 2020-10-27 | 2020-12-02 | electron microscopy | 5.9 | N.A. | N.A. | 33431876 | 10.1038/s41467-020-20465-w | 0 | auth_asym_id | FabH:FabL | IGHV4 | IGKV3 | A | F | EVQLQESGPSLVKPSQTLSLTCSVTGDSITNGYWNWIRKFPGNKLEYMGYISYSGSTYYSPSLKSRISITRDTSKNQHYLQLNSVTSEDTATYYCASDYHGSKYYFDYWGQGTTLTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVPRDCG | DIVMTQSHKFMSTSVGHRVSITCKASQDVGNDVAWYQQKPGQSPKLLIYWASTRHTGVPDRFTGSGSGTDFTLTISNVQSEDLADYFCQQYNRYPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC | VQLQESGPSLVKPSQTLSLTCSVTGDSITNGYWNWIRKFPGNKLEYMGYISYSGSTYYSPSLKSRISITRDTSKNQHYLQLNSVTSEDTATYYCASDYHGSKYYFDYWGQGTTLTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVPRDCG | DIVMTQSHKFMSTSVGHRVSITCKASQDVGNDVAWYQQKPGQSPKLLIYWASTRHTGVPDRFTGSGSGTDFTLTISNVQSEDLADYFCQQYNRYPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNE | 21.892893 | 21.675882 | 222 | 214 | 221 | 213 | 221 | 213 | 106 | the heavy chain of 3c1 fab that binds with the up rbd | the light chain of 3c1 fab | mus musculus | mus musculus | C | protein | spike glycoprotein | severe acute respiratory syndrome coronavirus 2 | 61 | 21 | 0.64 | HL | train |
7dcx_B_G | 7dcx | s-3c1-f3a structure, two rbds are up and one rbd is down, each rbd binds with a 3c1 fab. | yes | viral protein | 2020-10-27 | 2020-12-02 | electron microscopy | 5.9 | N.A. | N.A. | 33431876 | 10.1038/s41467-020-20465-w | 0 | auth_asym_id | FabH:FabL | IGHV4 | IGKV3 | B | G | EVQLQESGPSLVKPSQTLSLTCSVTGDSITNGYWNWIRKFPGNKLEYMGYISYSGSTYYSPSLKSRISITRDTSKNQHYLQLNSVTSEDTATYYCASDYHGSKYYFDYWGQGTTLTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVPRDCG | DIVMTQSHKFMSTSVGHRVSITCKASQDVGNDVAWYQQKPGQSPKLLIYWASTRHTGVPDRFTGSGSGTDFTLTISNVQSEDLADYFCQQYNRYPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC | VQLQESGPSLVKPSQTLSLTCSVTGDSITNGYWNWIRKFPGNKLEYMGYISYSGSTYYSPSLKSRISITRDTSKNQHYLQLNSVTSEDTATYYCASDYHGSKYYFDYWGQGTTLTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIV | DIVMTQSHKFMSTSVGHRVSITCKASQDVGNDVAWYQQKPGQSPKLLIYWASTRHTGVPDRFTGSGSGTDFTLTISNVQSEDLADYFCQQYNRYPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYE | 21.815683 | 22.04303 | 222 | 214 | 210 | 180 | 216 | 187 | 86 | the heavy chain of 3c1 fab that binds with the up rbd | the light chain of 3c1 fab | mus musculus | mus musculus | D | protein | spike glycoprotein | severe acute respiratory syndrome coronavirus 2 | 78 | 21 | 0.53 | HL | train |
7dcx_E_H | 7dcx | s-3c1-f3a structure, two rbds are up and one rbd is down, each rbd binds with a 3c1 fab. | yes | viral protein | 2020-10-27 | 2020-12-02 | electron microscopy | 5.9 | N.A. | N.A. | 33431876 | 10.1038/s41467-020-20465-w | 0 | auth_asym_id | FabH:FabL | IGHV4 | IGKV3 | E | H | EVQLQESGPSLVKPSQTLSLTCSVTGDSITNGYWNWIRKFPGNKLEYMGYISYSGSTYYSPSLKSRISITRDTSKNQHYLQLNSVTSEDTATYYCASDYHGSKYYFDYWGQGTTLTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVPRDCG | DIVMTQSHKFMSTSVGHRVSITCKASQDVGNDVAWYQQKPGQSPKLLIYWASTRHTGVPDRFTGSGSGTDFTLTISNVQSEDLADYFCQQYNRYPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC | VQLQESGPSLVKPSQTLSLTCSVTGDSITNGYWNWIRKFPGNKLEYMGYISYSGSTYYSPSLKSRISITRDTSKNQHYLQLNSVTSEDTATYYCASDYHGSKYYFDYWGQGTTLTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVPRDCG | DIVMTQSHKFMSTSVGHRVSITCKASQDVGNDVAWYQQKPGQSPKLLIYWASTRHTGVPDRFTGSGSGTDFTLTISNVQSEDLADYFCQQYNRYPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNE | 23.151268 | 22.555334 | 222 | 214 | 221 | 213 | 221 | 213 | 102 | the heavy chain of 3c1 fab that binds with the up rbd | the light chain of 3c1 fab | mus musculus | mus musculus | K | protein | spike glycoprotein | severe acute respiratory syndrome coronavirus 2 | 79 | 25 | 0.66 | HL | train |
7dd2_A_B | 7dd2 | s-3c1-f2 structure, two rbds are up and one rbd is down, the two up rbd bind with a 3c1 fab. | yes | viral protein | 2020-10-27 | 2020-12-02 | electron microscopy | 5.6 | N.A. | N.A. | 33431876 | 10.1038/s41467-020-20465-w | 0 | auth_asym_id | FabH:FabL | IGHV4 | IGKV3 | A | B | EVQLQESGPSLVKPSQTLSLTCSVTGDSITNGYWNWIRKFPGNKLEYMGYISYSGSTYYSPSLKSRISITRDTSKNQHYLQLNSVTSEDTATYYCASDYHGSKYYFDYWGQGTTLTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVPRDCG | DIVMTQSHKFMSTSVGHRVSITCKASQDVGNDVAWYQQKPGQSPKLLIYWASTRHTGVPDRFTGSGSGTDFTLTISNVQSEDLADYFCQQYNRYPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC | VQLQESGPSLVKPSQTLSLTCSVTGDSITNGYWNWIRKFPGNKLEYMGYISYSGSTYYSPSLKSRISITRDTSKNQHYLQLNSVTSEDTATYYCASDYHGSKYYFDYWGQGTTLTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVPRDCG | DIVMTQSHKFMSTSVGHRVSITCKASQDVGNDVAWYQQKPGQSPKLLIYWASTRHTGVPDRFTGSGSGTDFTLTISNVQSEDLADYFCQQYNRYPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNE | 21.48875 | 23.286776 | 222 | 214 | 221 | 213 | 221 | 213 | 105 | the heavy chain of 3c1 fab | the light chain of 3c1 fab | mus musculus | mus musculus | C | protein | spike glycoprotein | severe acute respiratory syndrome coronavirus 2 | 60 | 20 | 0.65 | HL | train |
7dd2_E_H | 7dd2 | s-3c1-f2 structure, two rbds are up and one rbd is down, the two up rbd bind with a 3c1 fab. | yes | viral protein | 2020-10-27 | 2020-12-02 | electron microscopy | 5.6 | N.A. | N.A. | 33431876 | 10.1038/s41467-020-20465-w | 0 | auth_asym_id | FabH:FabL | IGHV4 | IGKV3 | E | H | EVQLQESGPSLVKPSQTLSLTCSVTGDSITNGYWNWIRKFPGNKLEYMGYISYSGSTYYSPSLKSRISITRDTSKNQHYLQLNSVTSEDTATYYCASDYHGSKYYFDYWGQGTTLTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVPRDCG | DIVMTQSHKFMSTSVGHRVSITCKASQDVGNDVAWYQQKPGQSPKLLIYWASTRHTGVPDRFTGSGSGTDFTLTISNVQSEDLADYFCQQYNRYPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC | VQLQESGPSLVKPSQTLSLTCSVTGDSITNGYWNWIRKFPGNKLEYMGYISYSGSTYYSPSLKSRISITRDTSKNQHYLQLNSVTSEDTATYYCASDYHGSKYYFDYWGQGTTLTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVPRDCG | DIVMTQSHKFMSTSVGHRVSITCKASQDVGNDVAWYQQKPGQSPKLLIYWASTRHTGVPDRFTGSGSGTDFTLTISNVQSEDLADYFCQQYNRYPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNE | 21.841646 | 23.260391 | 222 | 214 | 221 | 213 | 221 | 213 | 101 | the heavy chain of 3c1 fab | the light chain of 3c1 fab | mus musculus | mus musculus | K | protein | spike glycoprotein | severe acute respiratory syndrome coronavirus 2 | 62 | 20 | 0.67 | HL | train |
7kkh_B_A | 7kkh | p1a4 fab in complex with ars1620 | no | immune system, antitumor protein | 2020-10-27 | 2022-04-27 | x-ray diffraction | 2 | 0.204 | 0.185 | 36099883 | 10.1016/j.ccell.2022.07.005 | 0 | auth_asym_id | FabH:FabL | IGHV3 | IGLV1 | B | A | QVQLQESGGGLVQPGRSLRLSCAASGFTFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARDYDWQYFDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC | VVTQPPSVSAAPGQEVTISCSGSSSNIGNNYVSWYQHLPGTAPKLLIYDSDKRPSGIPDRFSGSKSGTSATLGVTGLQTGDEADYYCGTWDSSLSAVMFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHKSYSCQVTHEGSTVEKTVAPTEC | QVQLQESGGGLVQPGRSLRLSCAASGFTFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARDYDWQYFDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC | VVTQPPSVSAAPGQEVTISCSGSSSNIGNNYVSWYQHLPGTAPKLLIYDSDKRPSGIPDRFSGSKSGTSATLGVTGLQTGDEADYYCGTWDSSLSAVMFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHKSYSCQVTHEGSTVEKTVAPTEC | 23.76911 | 20.62736 | 221 | 213 | 221 | 213 | 221 | 213 | 105 | p1a4 fab heavy chain | p1a4 fab light chain | homo sapiens | homo sapiens | N.A. | N.A. | N.A. | N.A. | 0 | 0 | 0 | HL | train |
7dd8_A_B | 7dd8 | s-3c1-f1 structure, one rbd is up and two rbds are down, the up rbd binds with a 3c1 fab | yes | viral protein | 2020-10-28 | 2020-12-02 | electron microscopy | 7.5 | N.A. | N.A. | 33431876 | 10.1038/s41467-020-20465-w | 0 | auth_asym_id | FabH:FabL | IGHV4 | IGKV3 | A | B | EVQLQESGPSLVKPSQTLSLTCSVTGDSITNGYWNWIRKFPGNKLEYMGYISYSGSTYYSPSLKSRISITRDTSKNQHYLQLNSVTSEDTATYYCASDYHGSKYYFDYWGQGTTLTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVPRDCG | DIVMTQSHKFMSTSVGHRVSITCKASQDVGNDVAWYQQKPGQSPKLLIYWASTRHTGVPDRFTGSGSGTDFTLTISNVQSEDLADYFCQQYNRYPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC | VQLQESGPSLVKPSQTLSLTCSVTGDSITNGYWNWIRKFPGNKLEYMGYISYSGSTYYSPSLKSRISITRDTSKNQHYLQLNSVTSEDTATYYCASDYHGSKYYFDYWGQGTTLTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVPRDCG | DIVMTQSHKFMSTSVGHRVSITCKASQDVGNDVAWYQQKPGQSPKLLIYWASTRHTGVPDRFTGSGSGTDFTLTISNVQSEDLADYFCQQYNRYPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNE | 22.161488 | 23.342897 | 222 | 214 | 221 | 213 | 221 | 213 | 104 | the heavy chain of 3c1 fab | the light chain of 3c1 chain | mus musculus | mus musculus | C | protein | spike glycoprotein | severe acute respiratory syndrome coronavirus 2 | 59 | 19 | 0.58 | HL | train |
7kkz_H_L | 7kkz | crystal structure of mouse anti-hiv potent neutralizing antibody m4h2k1 | no | antiviral protein | 2020-10-28 | 2021-07-07 | x-ray diffraction | 1.5 | 0.216 | 0.183 | 34156262 | 10.1128/mBio.00429-21 | 0 | auth_asym_id | FabH:FabL | IGHV3 | IGKV7 | H | L | EVKLEESGGGLVQPGGSMKLSCVASGITFSNSWMSWVRQSPEKGLEWVAEIRLKAQNYATHYAASVKGRFTISRDDSKSSVYLQMNNLRPEDTGIYYCTTPLGGYFDMDYWGQGTSLTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDK | DIVLTQSPASLAVSLGQRATISCRASESVDIYGISFMNWFQQRPGQPPKLLIYAASNRGSGVPARFSGSGSGTDFSLNIHPMEEDDTAMYFCQQSKEVPWTFGGGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | EVKLEESGGGLVQPGGSMKLSCVASGITFSNSWMSWVRQSPEKGLEWVAEIRLKAQNYATHYAASVKGRFTISRDDSKSSVYLQMNNLRPEDTGIYYCTTPLGGYFDMDYWGQGTSLTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPK | DIVLTQSPASLAVSLGQRATISCRASESVDIYGISFMNWFQQRPGQPPKLLIYAASNRGSGVPARFSGSGSGTDFSLNIHPMEEDDTAMYFCQQSKEVPWTFGGGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | 23.106234 | 22.835693 | 226 | 218 | 222 | 218 | 222 | 218 | 106 | heavy chain of fab fragment of mouse monoclonal antibody m4h2k1 | light chain of fab fragment of mouse monoclonal antibody m4h2k1 | mus musculus | mus musculus | N.A. | N.A. | N.A. | N.A. | 0 | 0 | 0 | HL | train |
7klg_H_L | 7klg | sars-cov-2 rbd in complex with fab 15033 | no | viral protein/immune system | 2020-10-30 | 2021-02-10 | x-ray diffraction | 3.2 | 0.29 | 0.271 | 34329642 | 10.1016/j.jmb.2021.167177 | 0 | auth_asym_id | FabH:FabL | IGHV3 | IGKV1 | H | L | EVQLVESGGGLVQPGGSLRLSCAASGFDLGGYSMHWVRQAPGKGLEWVAGIYASGGATAYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARSYYYGGFGMDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDK | DIQMTQSPSSLSASVGDRVTITCRASQSVSSAVAWYQQKPGKAPKLLIYSASDLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQSYRYPITFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | EVQLVESGGGLVQPGGSLRLSCAASGFDLGGYSMHWVRQAPGKGLEWVAGIYASGGATAYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARSYYYGGFGMDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC | DIQMTQSPSSLSASVGDRVTITCRASQSVSSAVAWYQQKPGKAPKLLIYSASDLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQSYRYPITFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | 22.52884 | 23.24768 | 225 | 214 | 223 | 214 | 223 | 214 | 107 | fab 15033 heavy chain | fab 15033 light chain | homo sapiens | homo sapiens | A | protein | spike glycoprotein | severe acute respiratory syndrome coronavirus 2 | 49 | 18 | 0.82 | HL | train |
7klg_I_M | 7klg | sars-cov-2 rbd in complex with fab 15033 | no | viral protein/immune system | 2020-10-30 | 2021-02-10 | x-ray diffraction | 3.2 | 0.29 | 0.271 | 34329642 | 10.1016/j.jmb.2021.167177 | 0 | auth_asym_id | FabH:FabL | IGHV3 | IGKV1 | I | M | EVQLVESGGGLVQPGGSLRLSCAASGFDLGGYSMHWVRQAPGKGLEWVAGIYASGGATAYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARSYYYGGFGMDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDK | DIQMTQSPSSLSASVGDRVTITCRASQSVSSAVAWYQQKPGKAPKLLIYSASDLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQSYRYPITFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | EVQLVESGGGLVQPGGSLRLSCAASGFDLGGYSMHWVRQAPGKGLEWVAGIYASGGATAYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARSYYYGGFGMDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC | DIQMTQSPSSLSASVGDRVTITCRASQSVSSAVAWYQQKPGKAPKLLIYSASDLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQSYRYPITFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | 22.500534 | 23.22024 | 225 | 214 | 223 | 214 | 223 | 214 | 105 | fab 15033 heavy chain | fab 15033 light chain | homo sapiens | homo sapiens | B | protein | spike glycoprotein | severe acute respiratory syndrome coronavirus 2 | 50 | 18 | 0.78 | HL | train |
7klh_H_L | 7klh | sars-cov-2 rbd in complex with fab 15033-7 | no | viral protein/immune system | 2020-10-30 | 2021-02-10 | x-ray diffraction | 3 | 0.283 | 0.256 | 34329642 | 10.1016/j.jmb.2021.167177 | 0 | auth_asym_id | FabH:FabL | IGHV3 | IGKV1 | H | L | EVQLVESGGGLVQPGGSLRLSCAASGFDLGGYSMHWVRQAPGKGLEWVAGIYASGGATAYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARSYYYGGFGMDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDK | DIQMTQSPSSLSASVGDRVTITCRASQSVSSAVAWYQQKPGKAPKLLIYSASDLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQSHTYPITFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | EVQLVESGGGLVQPGGSLRLSCAASGFDLGGYSMHWVRQAPGKGLEWVAGIYASGGATAYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARSYYYGGFGMDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC | DIQMTQSPSSLSASVGDRVTITCRASQSVSSAVAWYQQKPGKAPKLLIYSASDLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQSHTYPITFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | 22.53832 | 23.224697 | 225 | 214 | 223 | 214 | 223 | 214 | 105 | fab 15033-7 heavy chain | fab 15033-7 light chain | homo sapiens | homo sapiens | A | protein | spike glycoprotein | severe acute respiratory syndrome coronavirus 2 | 49 | 18 | 0.78 | HL | train |
7klh_I_M | 7klh | sars-cov-2 rbd in complex with fab 15033-7 | no | viral protein/immune system | 2020-10-30 | 2021-02-10 | x-ray diffraction | 3 | 0.283 | 0.256 | 34329642 | 10.1016/j.jmb.2021.167177 | 0 | auth_asym_id | FabH:FabL | IGHV3 | IGKV1 | I | M | EVQLVESGGGLVQPGGSLRLSCAASGFDLGGYSMHWVRQAPGKGLEWVAGIYASGGATAYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARSYYYGGFGMDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDK | DIQMTQSPSSLSASVGDRVTITCRASQSVSSAVAWYQQKPGKAPKLLIYSASDLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQSHTYPITFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | EVQLVESGGGLVQPGGSLRLSCAASGFDLGGYSMHWVRQAPGKGLEWVAGIYASGGATAYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARSYYYGGFGMDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC | DIQMTQSPSSLSASVGDRVTITCRASQSVSSAVAWYQQKPGKAPKLLIYSASDLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQSHTYPITFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | 22.513237 | 23.197609 | 225 | 214 | 223 | 214 | 223 | 214 | 104 | fab 15033-7 heavy chain | fab 15033-7 light chain | homo sapiens | homo sapiens | B | protein | spike glycoprotein | severe acute respiratory syndrome coronavirus 2 | 49 | 18 | 0.82 | HL | train |
7kmh_A_B | 7kmh | ly-cov488 neutralizing antibody against sars-cov-2 | no | immune system/viral protein | 2020-11-02 | 2021-01-27 | x-ray diffraction | 1.72 | 0.242 | 0.194 | 33820835 | 10.1126/scitranslmed.abf1906 | 0 | auth_asym_id | FabH:FabL | IGHV3 | IGKV1 | A | B | EVQLVESGGGLIQPGGSLRLSCAASGLTVSSNYMSWVRQAPGKGLEWVSVIYSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARSPYGGNSWGQGTLVTVSSASTKGPSVFPLAPCSRSTSESTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTKTYTCNVDHKPSNTKVDKRVHHHHHH | DIQMTQSPSSLSASVGDRVTITCQASQDISNYLNWYQQKPGKAPKLLIYDASNLETGVPSRFSGSGSGTDFTFTISSLQPEDIATYYCQQYDNLPITFGQGTRLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTQGTTSVTKSFNRGEC | EVQLVESGGGLIQPGGSLRLSCAASGLTVSSNYMSWVRQAPGKGLEWVSVIYSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARSPYGGNSWGQGTLVTVSSASTKGPSVFPLAPCSRSTSESTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTKTYTCNVDHKPSNTKVDKRV | DIQMTQSPSSLSASVGDRVTITCQASQDISNYLNWYQQKPGKAPKLLIYDASNLETGVPSRFSGSGSGTDFTFTISSLQPEDIATYYCQQYDNLPITFGQGTRLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTQGTTSVTKSFNRGE | 20.438656 | 23.417768 | 219 | 212 | 210 | 211 | 213 | 211 | 94 | ly-cov488 fab heavy chain | ly-cov488 fab light chain | homo sapiens | homo sapiens | C | protein | spike protein s1 | severe acute respiratory syndrome coronavirus 2 | 53 | 20 | 0.77 | HL | train |
7kmi_A_B | 7kmi | ly-cov481 neutralizing antibody against sars-cov-2 | no | immune system/viral protein | 2020-11-02 | 2021-01-27 | x-ray diffraction | 1.73 | 0.217 | 0.186 | 33820835 | 10.1126/scitranslmed.abf1906 | 0 | auth_asym_id | FabH:FabL | IGHV3 | IGKV1 | A | B | EVQLVESGGGLIQPGGSLRLSCAASGFTVSSNYMSWVRQAPGKGLEWVSVIYPGGSTFYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAREVAGTYDYWGQGTLVTVSSASTKGPSVFPLAPCSRSTSESTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTKTYTCNVDHKPSNTKVDKRVHHHHHH | DIQMTQSPSSVSASVGDRVTITCRASQGISSWLAWYQQKPGKAPKLLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQANSFPGGTFGPGTKVDIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTQGTTSVTKSFNRGEC | EVQLVESGGGLIQPGGSLRLSCAASGFTVSSNYMSWVRQAPGKGLEWVSVIYPGGSTFYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAREVAGTYDYWGQGTLVTVSSASTKGPSVFPLAPCSRSTSESTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTKTYTCNVDHKPSNTKVDKRVHHHH | DIQMTQSPSSVSASVGDRVTITCRASQGISSWLAWYQQKPGKAPKLLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQANSFPGGTFGPGTKVDIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTQGTTSVTKSFNRGEC | 21.614569 | 23.240742 | 220 | 213 | 218 | 213 | 218 | 213 | 101 | ly-cov481 fab heavy chain | ly-cov481 fab light chain | homo sapiens | homo sapiens | C | protein | spike protein s1 | severe acute respiratory syndrome coronavirus 2 | 63 | 21 | 0.7 | HL | train |
7aue_S | 7aue | melanocortin receptor 4 (mc4r) gs protein complex | no | membrane protein | 2020-11-02 | 2021-04-28 | electron microscopy | 2.97 | N.A. | N.A. | 33858992 | 10.1126/science.abf7958 | 0 | auth_asym_id | scFv | N.A. | N.A. | S | N.A. | DVQLVESGGGLVQPGGSRKLSCSASGFAFSSFGMHWVRQAPEKGLEWVAYISSGSGTIYYADTVKGRFTISRDDPKNTLFLQMTSLRSEDTAMYYCVRSIYYYGSSPFDFWGQGTTLTVSSGGGGSGGGGSGGGGSDIVMTQATSSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLTISRLEAEDVGVYYCMQHLEYPLTFGAGTKLELKGSLEVLFQ | N.A. | VQLVESGGGLVQPGGSRKLSCSASGFAFSSFGMHWVRQAPEKGLEWVAYISSGSGTIYYADTVKGRFTISRDDPKNTLFLQMTSLRSEDTAMYYCVRSIYYYGSSPFDFWGQGTTLTVSSGGGGSGGGGSGGGGSDIVMTQATSSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLTISRLEAEDVGVYYCMQHLEYPLTFGAGTKLEL | N.A. | 17.759739 | 0 | 256 | 0 | 232 | 0 | 246 | 0 | 0 | scfv16 | N.A. | mus musculus | N.A. | A;B | protein;protein | guanine nucleotide-binding protein g(s) subunit alpha isoforms short;guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1 | homo sapiens;homo sapiens | 33;19 | 21;8 | 0.95;0.8 | H_only | train |
7km6_H_L | 7km6 | apobec3b antibody 5g7 fv-clasp | no | immune system | 2020-11-02 | 2021-05-12 | x-ray diffraction | 1.67 | 0.238 | 0.189 | 33921405 | 10.3390/v13040663 | 0 | auth_asym_id | VH+:VL+ | IGHV3 | IGKV4 | H | L | MEVQLLESGGDLVKPGGSLKLSCAASGFTFSSYGMSWVRQTPDKRLEWVATISSGGSYTYYPDSVKGRFTISRDNAKNTLYLQMSSLKSEDTAMYYCARGGEGYYFDYWGQGTTLTVSSGSDYEFLKSWTVEDLQKRLLALDPMMEQEIEEIRQKCQSKRQPILDAIEAKHHHHHH | MDIVMSQSPSSLAVSVGEKVTMSCKSSQSLLYSSNQKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTISSVKAEDLAVYYCQQYYSYPYTFGGGTKLEIKAGSDYEFLKSWTVEDLQKRLLALDPMCEQEIEEIRQKYQSKRQPILDAIEAK | EVQLLESGGDLVKPGGSLKLSCAASGFTFSSYGMSWVRQTPDKRLEWVATISSGGSYTYYPDSVKGRFTISRDNAKNTLYLQMSSLKSEDTAMYYCARGGEGYYFDYWGQGTTLTVSSGSDYEFLKSWTVEDLQKRLLALDPMMEQEIEEIRQKCQSKRQPILDAIEAKH | MDIVMSQSPSSLAVSVGEKVTMSCKSSQSLLYSSNQKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTISSVKAEDLAVYYCQQYYSYPYTFGGGTKLEIKAGSDYEFLKSWTVEDLQKRLLALDPMCEQEIEEIRQKYQSKRQPILDAIEA | 21.376022 | 19.971075 | 176 | 166 | 170 | 165 | 170 | 165 | 108 | 5g7 human monoclonal fab heavy chain | 5g7 human monoclonal fab light chain | homo sapiens | homo sapiens | N.A. | N.A. | N.A. | N.A. | 0 | 0 | 0 | HL | train |
7km6_h_l | 7km6 | apobec3b antibody 5g7 fv-clasp | no | immune system | 2020-11-02 | 2021-05-12 | x-ray diffraction | 1.67 | 0.238 | 0.189 | 33921405 | 10.3390/v13040663 | 0 | auth_asym_id | VH+:VL+ | IGHV3 | IGKV4 | h | l | MEVQLLESGGDLVKPGGSLKLSCAASGFTFSSYGMSWVRQTPDKRLEWVATISSGGSYTYYPDSVKGRFTISRDNAKNTLYLQMSSLKSEDTAMYYCARGGEGYYFDYWGQGTTLTVSSGSDYEFLKSWTVEDLQKRLLALDPMMEQEIEEIRQKCQSKRQPILDAIEAKHHHHHH | MDIVMSQSPSSLAVSVGEKVTMSCKSSQSLLYSSNQKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTISSVKAEDLAVYYCQQYYSYPYTFGGGTKLEIKAGSDYEFLKSWTVEDLQKRLLALDPMCEQEIEEIRQKYQSKRQPILDAIEAK | MEVQLLESGGDLVKPGGSLKLSCAASGFTFSSYGMSWVRQTPDKRLEWVATISSGGSYTYYPDSVKGRFTISRDNAKNTLYLQMSSLKSEDTAMYYCARGGEGYYFDYWGQGTTLTVSSGSDYEFLKSWTVEDLQKRLLALDPMMEQEIEEIRQKCQSKRQPILDAIEAKH | MDIVMSQSPSSLAVSVGEKVTMSCKSSQSLLYSSNQKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTISSVKAEDLAVYYCQQYYSYPYTFGGGTKLEIKAGSDYEFLKSWTVEDLQKRLLALDPMCEQEIEEIRQKYQSKRQPILDAIEAK | 21.40873 | 20.314137 | 176 | 166 | 171 | 166 | 171 | 166 | 107 | 5g7 human monoclonal fab heavy chain | 5g7 human monoclonal fab light chain | homo sapiens | homo sapiens | N.A. | N.A. | N.A. | N.A. | 0 | 0 | 0 | HL | train |
7km5_C | 7km5 | crystal structure of sars-cov-2 rbd complexed with nanosota-1 | no | viral protein/immune system | 2020-11-02 | 2021-08-04 | x-ray diffraction | 3.19 | 0.294 | 0.247 | 34338634 | 10.7554/eLife.64815 | 0 | auth_asym_id | VHH | IGHV3 | N.A. | C | N.A. | QVQLVESGGGLVQPGGSLRLSCAASGFTFKNADMNWYRQVPGQGLEWVTSIYSDGRTVYADSVKGRFTVSRDNPKSTVSLQMNSLKPEDTGVYYCMAGSKSGHELDHWGQGTQVTVSSHHHHHH | N.A. | QVQLVESGGGLVQPGGSLRLSCAASGFTFKNADMNWYRQVPGQGLEWVTSIYSDGRTVYADSVKGRFTVSRDNPKSTVSLQMNSLKPEDTGVYYCMAGSKSGHELDHWGQGTQVTVSS | N.A. | 13.527947 | 0 | 124 | 0 | 113 | 0 | 118 | 0 | 0 | nanobody | N.A. | lama glama | N.A. | N.A. | N.A. | N.A. | N.A. | 0 | 0 | 0 | H_only | train |
7km5_D | 7km5 | crystal structure of sars-cov-2 rbd complexed with nanosota-1 | no | viral protein/immune system | 2020-11-02 | 2021-08-04 | x-ray diffraction | 3.19 | 0.294 | 0.247 | 34338634 | 10.7554/eLife.64815 | 0 | auth_asym_id | VHH | IGHV3 | N.A. | D | N.A. | QVQLVESGGGLVQPGGSLRLSCAASGFTFKNADMNWYRQVPGQGLEWVTSIYSDGRTVYADSVKGRFTVSRDNPKSTVSLQMNSLKPEDTGVYYCMAGSKSGHELDHWGQGTQVTVSSHHHHHH | N.A. | QVQLVESGGGLVQPGGSLRLSCAASGFTFKNADMNWYRQVPGQGLEWVTSIYSDGRTVYADSVKGRFTVSRDNPKSTVSLQMNSLKPEDTGVYYCMAGSKSGHELDHWGQGTQVTVSS | N.A. | 13.914773 | 0 | 124 | 0 | 118 | 0 | 118 | 0 | 0 | nanobody | N.A. | lama glama | N.A. | N.A. | N.A. | N.A. | N.A. | 0 | 0 | 0 | H_only | train |
7kmk_H_L | 7kmk | cryo-em structure of sars-cov-2 spike in complex with fab 15033-7, two rbds bound | no | viral protein/immune system | 2020-11-03 | 2021-02-10 | electron microscopy | 4.2 | N.A. | N.A. | 34329642 | 10.1016/j.jmb.2021.167177 | 0 | auth_asym_id | FabH:FabL | IGHV3 | IGKV1 | H | L | EVQLVESGGGLVQPGGSLRLSCAASGFDLGGYSMHWVRQAPGKGLEWVAGIYASGGATAYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARSYYYGGFGMDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDK | DIQMTQSPSSLSASVGDRVTITCRASQSVSSAVAWYQQKPGKAPKLLIYSASDLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQSHTYPITFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | EVQLVESGGGLVQPGGSLRLSCAASGFDLGGYSMHWVRQAPGKGLEWVAGIYASGGATAYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARSYYYGGFGMDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC | DIQMTQSPSSLSASVGDRVTITCRASQSVSSAVAWYQQKPGKAPKLLIYSASDLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQSHTYPITFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | 22.32861 | 22.20348 | 225 | 214 | 223 | 214 | 223 | 214 | 103 | fab 15033-7 heavy chain | fab 15033-7 light chain | homo sapiens | homo sapiens | A | protein | spike glycoprotein | severe acute respiratory syndrome coronavirus 2 | 42 | 17 | 0.81 | HL | train |
7kmk_I_M | 7kmk | cryo-em structure of sars-cov-2 spike in complex with fab 15033-7, two rbds bound | no | viral protein/immune system | 2020-11-03 | 2021-02-10 | electron microscopy | 4.2 | N.A. | N.A. | 34329642 | 10.1016/j.jmb.2021.167177 | 0 | auth_asym_id | FabH:FabL | IGHV3 | IGKV1 | I | M | EVQLVESGGGLVQPGGSLRLSCAASGFDLGGYSMHWVRQAPGKGLEWVAGIYASGGATAYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARSYYYGGFGMDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDK | DIQMTQSPSSLSASVGDRVTITCRASQSVSSAVAWYQQKPGKAPKLLIYSASDLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQSHTYPITFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | EVQLVESGGGLVQPGGSLRLSCAASGFDLGGYSMHWVRQAPGKGLEWVAGIYASGGATAYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARSYYYGGFGMDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC | DIQMTQSPSSLSASVGDRVTITCRASQSVSSAVAWYQQKPGKAPKLLIYSASDLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQSHTYPITFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | 22.645212 | 21.8407 | 225 | 214 | 223 | 214 | 223 | 214 | 101 | fab 15033-7 heavy chain | fab 15033-7 light chain | homo sapiens | homo sapiens | B | protein | spike glycoprotein | severe acute respiratory syndrome coronavirus 2 | 44 | 16 | 0.8 | HL | train |
7kml_H_L | 7kml | cryo-em structure of sars-cov-2 spike in complex with fab 15033-7, three rbds bound | no | viral protein/immune system | 2020-11-03 | 2021-02-10 | electron microscopy | 3.8 | N.A. | N.A. | 34329642 | 10.1016/j.jmb.2021.167177 | 0 | auth_asym_id | FabH:FabL | IGHV3 | IGKV1 | H | L | EVQLVESGGGLVQPGGSLRLSCAASGFDLGGYSMHWVRQAPGKGLEWVAGIYASGGATAYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARSYYYGGFGMDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDK | DIQMTQSPSSLSASVGDRVTITCRASQSVSSAVAWYQQKPGKAPKLLIYSASDLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQSHTYPITFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | EVQLVESGGGLVQPGGSLRLSCAASGFDLGGYSMHWVRQAPGKGLEWVAGIYASGGATAYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARSYYYGGFGMDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC | DIQMTQSPSSLSASVGDRVTITCRASQSVSSAVAWYQQKPGKAPKLLIYSASDLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQSHTYPITFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | 22.347048 | 22.339626 | 225 | 214 | 223 | 214 | 223 | 214 | 109 | fab 15033-7 heavy chain | fab 15033-7 light chain | homo sapiens | homo sapiens | A | protein | spike glycoprotein | severe acute respiratory syndrome coronavirus 2 | 38 | 15 | 0.79 | HL | train |
7kml_I_M | 7kml | cryo-em structure of sars-cov-2 spike in complex with fab 15033-7, three rbds bound | no | viral protein/immune system | 2020-11-03 | 2021-02-10 | electron microscopy | 3.8 | N.A. | N.A. | 34329642 | 10.1016/j.jmb.2021.167177 | 0 | auth_asym_id | FabH:FabL | IGHV3 | IGKV1 | I | M | EVQLVESGGGLVQPGGSLRLSCAASGFDLGGYSMHWVRQAPGKGLEWVAGIYASGGATAYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARSYYYGGFGMDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDK | DIQMTQSPSSLSASVGDRVTITCRASQSVSSAVAWYQQKPGKAPKLLIYSASDLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQSHTYPITFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | EVQLVESGGGLVQPGGSLRLSCAASGFDLGGYSMHWVRQAPGKGLEWVAGIYASGGATAYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARSYYYGGFGMDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC | DIQMTQSPSSLSASVGDRVTITCRASQSVSSAVAWYQQKPGKAPKLLIYSASDLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQSHTYPITFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | 22.347054 | 22.339624 | 225 | 214 | 223 | 214 | 223 | 214 | 109 | fab 15033-7 heavy chain | fab 15033-7 light chain | homo sapiens | homo sapiens | B | protein | spike glycoprotein | severe acute respiratory syndrome coronavirus 2 | 38 | 15 | 0.79 | HL | train |
7kml_J_N | 7kml | cryo-em structure of sars-cov-2 spike in complex with fab 15033-7, three rbds bound | no | viral protein/immune system | 2020-11-03 | 2021-02-10 | electron microscopy | 3.8 | N.A. | N.A. | 34329642 | 10.1016/j.jmb.2021.167177 | 0 | auth_asym_id | FabH:FabL | IGHV3 | IGKV1 | J | N | EVQLVESGGGLVQPGGSLRLSCAASGFDLGGYSMHWVRQAPGKGLEWVAGIYASGGATAYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARSYYYGGFGMDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDK | DIQMTQSPSSLSASVGDRVTITCRASQSVSSAVAWYQQKPGKAPKLLIYSASDLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQSHTYPITFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | EVQLVESGGGLVQPGGSLRLSCAASGFDLGGYSMHWVRQAPGKGLEWVAGIYASGGATAYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARSYYYGGFGMDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC | DIQMTQSPSSLSASVGDRVTITCRASQSVSSAVAWYQQKPGKAPKLLIYSASDLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQSHTYPITFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | 22.347054 | 22.33963 | 225 | 214 | 223 | 214 | 223 | 214 | 109 | fab 15033-7 heavy chain | fab 15033-7 light chain | homo sapiens | homo sapiens | C | protein | spike glycoprotein | severe acute respiratory syndrome coronavirus 2 | 38 | 15 | 0.79 | HL | train |
7kn5_C | 7kn5 | crystal structure of sars-cov-2 receptor binding domain complexed with nanobodies vhh e and u | no | viral protein/immune system | 2020-11-04 | 2021-01-20 | x-ray diffraction | 1.87 | 0.213 | 0.177 | 33436526 | 10.1126/science.abe6230 | 0 | auth_asym_id | VHH | IGHV3 | N.A. | C | N.A. | QVQLVETGGGFVQPGGSLRLSCAASGVTLDYYAIGWFRQAPGKEREGVSCIGSSDGRTYYSDSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCALTVGTYYSGNYHYTCSDDMDYWGKGTQVTVSS | N.A. | QVQLVETGGGFVQPGGSLRLSCAASGVTLDYYAIGWFRQAPGKEREGVSCIGSSDGRTYYSDSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCALTVGTYYSGNYHYTCSDDMDYWGKGTQVTVSS | N.A. | 14.574905 | 0 | 129 | 0 | 129 | 0 | 129 | 0 | 0 | vhh e | N.A. | vicugna pacos | N.A. | A | protein | spike protein s1 | severe acute respiratory syndrome coronavirus 2 | 42 | 17 | 0.85 | H_only | train |
7kn5_E | 7kn5 | crystal structure of sars-cov-2 receptor binding domain complexed with nanobodies vhh e and u | no | viral protein/immune system | 2020-11-04 | 2021-01-20 | x-ray diffraction | 1.87 | 0.213 | 0.177 | 33436526 | 10.1126/science.abe6230 | 0 | auth_asym_id | VHH | IGHV3 | N.A. | E | N.A. | QVQLVESGGGLVQPGGSLRLSCAASGFTLDYYAIGWFRQAPGKEREGVSCISSSGGSTHFADSVKGRFTISRDNAKNTVYLQMNSLIPEDTAVYYCAAQSGSYYWCGSDWHEYEYWGQGTQVTVSS | N.A. | VQLVESGGGLVQPGGSLRLSCAASGFTLDYYAIGWFRQAPGKEREGVSCISSSGGSTHFADSVKGRFTISRDNAKNTVYLQMNSLIPEDTAVYYCAAQSGSYYWCGSDWHEYEYWGQGTQVTV | N.A. | 13.455421 | 0 | 126 | 0 | 121 | 0 | 123 | 0 | 0 | vhh u | N.A. | vicugna pacos | N.A. | A | protein | spike protein s1 | severe acute respiratory syndrome coronavirus 2 | 33 | 13 | 1 | H_only | train |
7kn5_D | 7kn5 | crystal structure of sars-cov-2 receptor binding domain complexed with nanobodies vhh e and u | no | viral protein/immune system | 2020-11-04 | 2021-01-20 | x-ray diffraction | 1.87 | 0.213 | 0.177 | 33436526 | 10.1126/science.abe6230 | 0 | auth_asym_id | VHH | IGHV3 | N.A. | D | N.A. | QVQLVETGGGFVQPGGSLRLSCAASGVTLDYYAIGWFRQAPGKEREGVSCIGSSDGRTYYSDSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCALTVGTYYSGNYHYTCSDDMDYWGKGTQVTVSS | N.A. | QVQLVETGGGFVQPGGSLRLSCAASGVTLDYYAIGWFRQAPGKEREGVSCIGSSDGRTYYSDSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCALTVGTYYSGNYHYTCSDDMDYWGKGTQVTVSS | N.A. | 14.530839 | 0 | 129 | 0 | 129 | 0 | 129 | 0 | 0 | vhh e | N.A. | vicugna pacos | N.A. | B | protein | spike protein s1 | severe acute respiratory syndrome coronavirus 2 | 52 | 21 | 0.75 | H_only | train |
7kn5_F | 7kn5 | crystal structure of sars-cov-2 receptor binding domain complexed with nanobodies vhh e and u | no | viral protein/immune system | 2020-11-04 | 2021-01-20 | x-ray diffraction | 1.87 | 0.213 | 0.177 | 33436526 | 10.1126/science.abe6230 | 0 | auth_asym_id | VHH | IGHV3 | N.A. | F | N.A. | QVQLVESGGGLVQPGGSLRLSCAASGFTLDYYAIGWFRQAPGKEREGVSCISSSGGSTHFADSVKGRFTISRDNAKNTVYLQMNSLIPEDTAVYYCAAQSGSYYWCGSDWHEYEYWGQGTQVTVSS | N.A. | VQLVESGGGLVQPGGSLRLSCAASGFTLDYYAIGWFRQAPGKEREGVSCISSSGGSTHFADSVKGRFTISRDNAKNTVYLQMNSLIPEDTAVYYCAAQSGSYYWCGSDWHEYEYWGQGTQVTV | N.A. | 13.496342 | 0 | 126 | 0 | 123 | 0 | 123 | 0 | 0 | vhh u | N.A. | vicugna pacos | N.A. | B | protein | spike protein s1 | severe acute respiratory syndrome coronavirus 2 | 32 | 13 | 1 | H_only | train |
7kn6_C | 7kn6 | crystal structure of sars-cov-2 receptor binding domain complexed with nanobody vhh v and antibody fab cc12.3 | no | viral protein/immune system | 2020-11-04 | 2021-01-20 | x-ray diffraction | 2.55 | 0.238 | 0.193 | 33436526 | 10.1126/science.abe6230 | 0 | auth_asym_id | VHH | IGHV3 | N.A. | C | N.A. | QVQLVETGGGLVQPGGSLRLSCAASGFTFSSYAMGWARQVPGKGLEWVSYIYSDGSTEYQDSVKGRFTISRDNAKSTVYLQMNSLKPEDTAVYYCATEGSLGGWGRDFGSWGQGTQVTVSSGGLPETGGHHHHHH | N.A. | QVQLVETGGGLVQPGGSLRLSCAASGFTFSSYAMGWARQVPGKGLEWVSYIYSDGSTEYQDSVKGRFTISRDNAKSTVYLQMNSLKPEDTAVYYCATEGSLGGWGRDFGSWGQGTQVTVSS | N.A. | 13.660822 | 0 | 135 | 0 | 121 | 0 | 121 | 0 | 0 | vhh v | N.A. | vicugna pacos | N.A. | A | protein | spike protein s1 | severe acute respiratory syndrome coronavirus 2 | 50 | 12 | 0.52 | H_only | train |
7kn6_H_L | 7kn6 | crystal structure of sars-cov-2 receptor binding domain complexed with nanobody vhh v and antibody fab cc12.3 | no | viral protein/immune system | 2020-11-04 | 2021-01-20 | x-ray diffraction | 2.55 | 0.238 | 0.193 | 33436526 | 10.1126/science.abe6230 | 0 | auth_asym_id | FabH:FabL | IGHV3 | IGKV3 | H | L | QVQLVESGGGLIQPGGSLRLSCAASGFTVSSNYMSWVRQAPGKGLEWVSVIYSGGSTFYADSVKGRFTISRDNSKSTLYLQMNSLRVEDTAVYYCARDFGDFYFDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC | EIVLTQSPGTLSLSPGERATLSCRASQSVSSYLAWYQQKPGQAPRLLIYGASSRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQYGSSPRTFGQGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | QVQLVESGGGLIQPGGSLRLSCAASGFTVSSNYMSWVRQAPGKGLEWVSVIYSGGSTFYADSVKGRFTISRDNSKSTLYLQMNSLRVEDTAVYYCARDFGDFYFDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEP | EIVLTQSPGTLSLSPGERATLSCRASQSVSSYLAWYQQKPGQAPRLLIYGASSRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQYGSSPRTFGQGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE | 22.390095 | 22.615438 | 220 | 214 | 212 | 213 | 217 | 213 | 92 | cc12.3 fab heavy chain | cc12.3 fab light chain | homo sapiens | homo sapiens | A | protein | spike protein s1 | severe acute respiratory syndrome coronavirus 2 | 57 | 21 | 0.75 | HL | train |
7deo_A | 7deo | crystal structure of sars-cov-2 rbd in complex with a neutralizing antibody scfv | no | viral protein/antiviral protein | 2020-11-04 | 2021-03-31 | x-ray diffraction | 2.5 | 0.232 | 0.187 | 33961621 | 10.1371/journal.pbio.3001209 | 0 | auth_asym_id | scFv | N.A. | N.A. | A | N.A. | GSEVQLVESGGGVVQPGRSLRLSCAASGFTFSYYGMHWVRQAPGKGLEWVAVIWYDGSNRFYADSVKGRFTISRDNSKSTLYLQMNSLRAEDTAVYYCATDPPGLRFRFDYWGQGTLVTVSSGGGGSGGGGSGGGGSDIVMTQSPLSLPVTPGEPASISCRSSQSLLHSNGYNYLDWYLQKPGQSPQLLIYLGSNRASGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCMQGLQTPLTFGGGTKVEIKGGGSHHHHHH | N.A. | GSEVQLVESGGGVVQPGRSLRLSCAASGFTFSYYGMHWVRQAPGKGLEWVAVIWYDGSNRFYADSVKGRFTISRDNSKSTLYLQMNSLRAEDTAVYYCATDPPGLRFRFDYWGQGTLVTVSSGGGGSGGGGSGGGGSDIVMTQSPLSLPVTPGEPASISCRSSQSLLHSNGYNYLDWYLQKPGQSPQLLIYLGSNRASGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCMQGLQTPLTFGGGTKVEIK | N.A. | 17.546213 | 0 | 259 | 0 | 241 | 0 | 249 | 0 | 0 | antibody scfv | N.A. | homo sapiens | N.A. | B | protein | spike protein s1 | severe acute respiratory syndrome coronavirus 2 | 47 | 21 | 0.81 | H_only | train |
7deo_C | 7deo | crystal structure of sars-cov-2 rbd in complex with a neutralizing antibody scfv | no | viral protein/antiviral protein | 2020-11-04 | 2021-03-31 | x-ray diffraction | 2.5 | 0.232 | 0.187 | 33961621 | 10.1371/journal.pbio.3001209 | 0 | auth_asym_id | scFv | N.A. | N.A. | C | N.A. | GSEVQLVESGGGVVQPGRSLRLSCAASGFTFSYYGMHWVRQAPGKGLEWVAVIWYDGSNRFYADSVKGRFTISRDNSKSTLYLQMNSLRAEDTAVYYCATDPPGLRFRFDYWGQGTLVTVSSGGGGSGGGGSGGGGSDIVMTQSPLSLPVTPGEPASISCRSSQSLLHSNGYNYLDWYLQKPGQSPQLLIYLGSNRASGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCMQGLQTPLTFGGGTKVEIKGGGSHHHHHH | N.A. | GSEVQLVESGGGVVQPGRSLRLSCAASGFTFSYYGMHWVRQAPGKGLEWVAVIWYDGSNRFYADSVKGRFTISRDNSKSTLYLQMNSLRAEDTAVYYCATDPPGLRFRFDYWGQGTLVTVSSGGGGSGGGGSGGGGSDIVMTQSPLSLPVTPGEPASISCRSSQSLLHSNGYNYLDWYLQKPGQSPQLLIYLGSNRASGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCMQGLQTPLTFGGGTKVEIK | N.A. | 17.481455 | 0 | 259 | 0 | 234 | 0 | 249 | 0 | 0 | antibody scfv | N.A. | homo sapiens | N.A. | D | protein | spike protein s1 | severe acute respiratory syndrome coronavirus 2 | 53 | 23 | 0.82 | H_only | train |
7kn3_H_L | 7kn3 | crystal structure of sars-cov-2 spike protein receptor-binding domain complexed with a pre-pandemic antibody s-b8 fab | no | viral protein/immune system | 2020-11-04 | 2021-09-22 | x-ray diffraction | 2.25 | 0.222 | 0.186 | 34716683 | 10.1002/advs.202102181 | 0 | auth_asym_id | FabH:FabL | IGHV3 | IGKV4 | H | L | QVQLVQSGGGLIQPGGSLRLSCAASGFTVSLSHMNWVRQAPGKGLEWVSITYGDGNSDYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAREYYYGMDVWGQGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC | DIVMTQSPDSLAVSLGERATINCKSSQSVLYSSNNKNYLAWYQQKPGQPPKLLIYWASTRESGVPDRFSGSGSGTDFTLTISSLQAEDVAVYYCQQYYSLPLTFGGGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGECS | QVQLVQSGGGLIQPGGSLRLSCAASGFTVSLSHMNWVRQAPGKGLEWVSITYGDGNSDYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAREYYYGMDVWGQGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC | DIVMTQSPDSLAVSLGERATINCKSSQSVLYSSNNKNYLAWYQQKPGQPPKLLIYWASTRESGVPDRFSGSGSGTDFTLTISSLQAEDVAVYYCQQYYSLPLTFGGGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGECS | 23.009693 | 23.356174 | 219 | 221 | 219 | 221 | 219 | 221 | 98 | s-b8 fab heavy chain | s-b8 fab light chain | homo sapiens | homo sapiens | A | protein | spike protein s1 | severe acute respiratory syndrome coronavirus 2 | 49 | 18 | 0.69 | HL | train |
7kn3_M_N | 7kn3 | crystal structure of sars-cov-2 spike protein receptor-binding domain complexed with a pre-pandemic antibody s-b8 fab | no | viral protein/immune system | 2020-11-04 | 2021-09-22 | x-ray diffraction | 2.25 | 0.222 | 0.186 | 34716683 | 10.1002/advs.202102181 | 0 | auth_asym_id | FabH:FabL | IGHV3 | IGKV4 | M | N | QVQLVQSGGGLIQPGGSLRLSCAASGFTVSLSHMNWVRQAPGKGLEWVSITYGDGNSDYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAREYYYGMDVWGQGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC | DIVMTQSPDSLAVSLGERATINCKSSQSVLYSSNNKNYLAWYQQKPGQPPKLLIYWASTRESGVPDRFSGSGSGTDFTLTISSLQAEDVAVYYCQQYYSLPLTFGGGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGECS | QVQLVQSGGGLIQPGGSLRLSCAASGFTVSLSHMNWVRQAPGKGLEWVSITYGDGNSDYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAREYYYGMDVWGQGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKS | DIVMTQSPDSLAVSLGERATINCKSSQSVLYSSNNKNYLAWYQQKPGQPPKLLIYWASTRESGVPDRFSGSGSGTDFTLTISSLQAEDVAVYYCQQYYSLPLTFGGGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGECS | 22.659298 | 23.446901 | 219 | 221 | 215 | 221 | 218 | 221 | 98 | s-b8 fab heavy chain | s-b8 fab light chain | homo sapiens | homo sapiens | B | protein | spike protein s1 | severe acute respiratory syndrome coronavirus 2 | 49 | 17 | 0.68 | HL | train |
7kn4_H_L | 7kn4 | crystal structure of sars-cov-2 spike protein receptor-binding domain complexed with a pre-pandemic antibody s-e6 fab | no | viral protein/immune system | 2020-11-04 | 2021-09-22 | x-ray diffraction | 2.7 | 0.291 | 0.241 | 34716683 | 10.1002/advs.202102181 | 0 | auth_asym_id | FabH:FabL | IGHV4 | IGLV1 | H | L | QVTLRESGPGLVKPSETLSLTCAVSGGSLSSVNYYWSWIRQHPGKGLEWIGYIYYSGSTNYNPSLKSRVTMSLDTSKNQFSLKLSSVTAADTAVYYCATPGAIMGALHIWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC | QAVLTQPSSASSTPGQRVIISCSGSSSNIGSNTVSWYQQVPGAAPKLLIYFDYRRPSGVPDRFSGTRSGTSASLGISGLQSEDEADYYCAAWDDSLSAWVFGRGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS | QVTLRESGPGLVKPSETLSLTCAVSGGSLSSVNYYWSWIRQHPGKGLEWIGYIYYSGSTNYNPSLKSRVTMSLDTSKNQFSLKLSSVTAADTAVYYCATPGAIMGALHIWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK | AVLTQPSSASSTPGQRVIISCSGSSSNIGSNTVSWYQQVPGAAPKLLIYFDYRRPSGVPDRFSGTRSGTSASLGISGLQSEDEADYYCAAWDDSLSAWVFGRGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAP | 20.953918 | 23.545635 | 223 | 216 | 217 | 211 | 221 | 211 | 98 | s-e6 fab heavy chain | s-e6 fab light chain | homo sapiens | homo sapiens | A | protein | spike protein s1 | severe acute respiratory syndrome coronavirus 2 | 51 | 18 | 0.67 | HL | train |
7kn4_M_N | 7kn4 | crystal structure of sars-cov-2 spike protein receptor-binding domain complexed with a pre-pandemic antibody s-e6 fab | no | viral protein/immune system | 2020-11-04 | 2021-09-22 | x-ray diffraction | 2.7 | 0.291 | 0.241 | 34716683 | 10.1002/advs.202102181 | 0 | auth_asym_id | FabH:FabL | IGHV4 | IGLV1 | M | N | QVTLRESGPGLVKPSETLSLTCAVSGGSLSSVNYYWSWIRQHPGKGLEWIGYIYYSGSTNYNPSLKSRVTMSLDTSKNQFSLKLSSVTAADTAVYYCATPGAIMGALHIWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC | QAVLTQPSSASSTPGQRVIISCSGSSSNIGSNTVSWYQQVPGAAPKLLIYFDYRRPSGVPDRFSGTRSGTSASLGISGLQSEDEADYYCAAWDDSLSAWVFGRGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS | QVTLRESGPGLVKPSETLSLTCAVSGGSLSSVNYYWSWIRQHPGKGLEWIGYIYYSGSTNYNPSLKSRVTMSLDTSKNQFSLKLSSVTAADTAVYYCATPGAIMGALHIWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK | AVLTQPSSASSTPGQRVIISCSGSSSNIGSNTVSWYQQVPGAAPKLLIYFDYRRPSGVPDRFSGTRSGTSASLGISGLQSEDEADYYCAAWDDSLSAWVFGRGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAP | 21.01787 | 23.854906 | 223 | 216 | 216 | 211 | 221 | 211 | 98 | s-e6 fab heavy chain | s-e6 fab light chain | homo sapiens | homo sapiens | B | protein | spike protein s1 | severe acute respiratory syndrome coronavirus 2 | 51 | 18 | 0.72 | HL | train |
7det_B | 7det | crystal structure of sars-cov-2 rbd in complex with a neutralizing antibody scfv | no | viral protein/antiviral protein | 2020-11-05 | 2021-03-31 | x-ray diffraction | 2.2 | 0.26 | 0.212 | 33961621 | 10.1371/journal.pbio.3001209 | 0 | auth_asym_id | scFv | N.A. | N.A. | B | N.A. | MKFLVNVALVFMVVYISYIYADGSQVQLVQSGAEVKKPGASVKLSCKASGYSFTSYWVNWVRQAPGQGLEWIGMIHPSDSETRLNQKFKDRVTITVDKSTSTAYMELSSLRSEDTAVYYCARADGYEWYFDVWGRGTLVTVSSGGGGSGGGGSGGGGSDIVLTQSPASLAVSPGQRATITCRASESVDSYGNSFMHWYQQKPGQPPKLLIYRASNLESGIPARFSGSGSGTDFTLTINPVEANDVANYYCQQSNEDPWTFGQGTKVEIKAAAHHHHHHHH | N.A. | QVQLVQSGAEVKKPGASVKLSCKASGYSFTSYWVNWVRQAPGQGLEWIGMIHPSDSETRLNQKFKDRVTITVDKSTSTAYMELSSLRSEDTAVYYCARADGYEWYFDVWGRGTLVTVSSGGGGSGGGGSGGGGSDIVLTQSPASLAVSPGQRATITCRASESVDSYGNSFMHWYQQKPGQPPKLLIYRASNLESGIPARFSGSGSGTDFTLTINPVEANDVANYYCQQSNEDPWTFGQGTKVEIK | N.A. | 17.378601 | 0 | 280 | 0 | 231 | 0 | 245 | 0 | 0 | antibody scfv | N.A. | mus musculus | N.A. | A | protein | spike protein s1 | severe acute respiratory syndrome coronavirus 2 | 39 | 19 | 0.9 | H_only | train |
7det_D | 7det | crystal structure of sars-cov-2 rbd in complex with a neutralizing antibody scfv | no | viral protein/antiviral protein | 2020-11-05 | 2021-03-31 | x-ray diffraction | 2.2 | 0.26 | 0.212 | 33961621 | 10.1371/journal.pbio.3001209 | 0 | auth_asym_id | scFv | N.A. | N.A. | D | N.A. | MKFLVNVALVFMVVYISYIYADGSQVQLVQSGAEVKKPGASVKLSCKASGYSFTSYWVNWVRQAPGQGLEWIGMIHPSDSETRLNQKFKDRVTITVDKSTSTAYMELSSLRSEDTAVYYCARADGYEWYFDVWGRGTLVTVSSGGGGSGGGGSGGGGSDIVLTQSPASLAVSPGQRATITCRASESVDSYGNSFMHWYQQKPGQPPKLLIYRASNLESGIPARFSGSGSGTDFTLTINPVEANDVANYYCQQSNEDPWTFGQGTKVEIKAAAHHHHHHHH | N.A. | QVQLVQSGAEVKKPGASVKLSCKASGYSFTSYWVNWVRQAPGQGLEWIGMIHPSDSETRLNQKFKDRVTITVDKSTSTAYMELSSLRSEDTAVYYCARADGYEWYFDVWGRGTLVTVSSGGGGSGGGGSGGGGSDIVLTQSPASLAVSPGQRATITCRASESVDSYGNSFMHWYQQKPGQPPKLLIYRASNLESGIPARFSGSGSGTDFTLTINPVEANDVANYYCQQSNEDPWTFGQGTKVEIK | N.A. | 17.330147 | 0 | 280 | 0 | 231 | 0 | 245 | 0 | 0 | antibody scfv | N.A. | mus musculus | N.A. | C | protein | spike protein s1 | severe acute respiratory syndrome coronavirus 2 | 40 | 18 | 0.9 | H_only | train |
7deu_B | 7deu | crystal structure of sars-cov-2 rbd in complex with a neutralizing antibody scfv | no | viral protein/antiviral protein | 2020-11-05 | 2021-03-31 | x-ray diffraction | 2.1 | 0.229 | 0.209 | 33961621 | 10.1371/journal.pbio.3001209 | 0 | auth_asym_id | scFv | N.A. | N.A. | B | N.A. | EVQLQQSGPELVKPGASVKISCKTSGYTFTEYTMHWVKQSHGKSLEWIGGINPNNGDNTYNQKLKGKATLTVHKSSSTAYMELRSLTSEDSAVYYCARDGYPYYYALDYWGQGTSVTVSSGGGGSGGGGSGGGGSDIVMTQSQKFMSTSVGDRVSVTCKASQNVGTNVAWYQQKPGQSPKPLIYSASSRYSGVPDRFTGSGSGTDFTLTISNVQSEDLAEYFCQQYNNYPWTFGGGTKLEIKAAAHHHHHHHH | N.A. | EVQLQQSGPELVKPGASVKISCKTSGYTFTEYTMHWVKQSHGKSLEWIGGINPNNGDNTYNQKLKGKATLTVHKSSSTAYMELRSLTSEDSAVYYCARDGYPYYYALDYWGQGTSVTVSSGGGGSGGGGSGGGGSDIVMTQSQKFMSTSVGDRVSVTCKASQNVGTNVAWYQQKPGQSPKPLIYSASSRYSGVPDRFTGSGSGTDFTLTISNVQSEDLAEYFCQQYNNYPWTFGGGTKLEIKA | N.A. | 17.374935 | 0 | 253 | 0 | 231 | 0 | 243 | 0 | 0 | antibody scfv | N.A. | mus musculus | N.A. | A | protein | spike protein s1 | severe acute respiratory syndrome coronavirus 2 | 31 | 13 | 0.68 | H_only | train |
7df9_H_L | 7df9 | crystal of arrestin2-v2rpp-1-fab30 complex | no | signaling protein | 2020-11-06 | 2021-07-28 | x-ray diffraction | 3.17 | 0.281 | 0.255 | 33888704 | 10.1038/s41467-021-22731-x | 0 | auth_asym_id | FabH:FabL | IGHV3 | IGKV1 | H | L | MFVFSIATNAYAEISEVQLVESGGGLVQPGGSLRLSCAASGFNVYSSSIHWVRQAPGKGLEWVASISSYYGYTYYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARSRQFWYSGLDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHHHHHHHH | MFVFSIATNAYASDIQMTQSPSSLSASVGDRVTITCRASQSVSSAVAWYQQKPGKAPKLLIYSASSLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQYKYVPVTFGQGTKVEIKRTVAAPSVFIFPPSDSQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | VQLVESGGGLVQPGGSLRLSCAASGFNVYSSSIHWVRQAPGKGLEWVASISSYYGYTYYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARSRQFWYSGLDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVE | SDIQMTQSPSSLSASVGDRVTITCRASQSVSSAVAWYQQKPGKAPKLLIYSASSLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQYKYVPVTFGQGTKVEIKRTVAAPSVFIFPPSDSQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNR | 21.537876 | 22.364063 | 249 | 227 | 208 | 212 | 218 | 212 | 92 | fab30 heavy chain | fab30 light chain | mus musculus | mus musculus | A | protein | beta-arrestin-1 | bos taurus | 54 | 22 | 0.73 | HL | train |
7dfb_H_L | 7dfb | crystal of arrestin2-v2rpp-6-7-fab30 complex | no | signaling protein | 2020-11-06 | 2021-07-28 | x-ray diffraction | 3.28 | 0.29 | 0.231 | 33888704 | 10.1038/s41467-021-22731-x | 0 | auth_asym_id | FabH:FabL | IGHV3 | IGKV1 | H | L | MFVFSIATNAYAEISEVQLVESGGGLVQPGGSLRLSCAASGFNVYSSSIHWVRQAPGKGLEWVASISSYYGYTYYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARSRQFWYSGLDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHHHHHHHH | MFVFSIATNAYASDIQMTQSPSSLSASVGDRVTITCRASQSVSSAVAWYQQKPGKAPKLLIYSASSLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQYKYVPVTFGQGTKVEIKRTVAAPSVFIFPPSDSQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | VQLVESGGGLVQPGGSLRLSCAASGFNVYSSSIHWVRQAPGKGLEWVASISSYYGYTYYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARSRQFWYSGLDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVE | SDIQMTQSPSSLSASVGDRVTITCRASQSVSSAVAWYQQKPGKAPKLLIYSASSLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQYKYVPVTFGQGTKVEIKRTVAAPSVFIFPPSDSQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNR | 21.368002 | 22.201368 | 249 | 227 | 213 | 212 | 218 | 212 | 89 | fab30 heavy chain | fab30 light chain | mus musculus | mus musculus | A | protein | beta-arrestin-1 | bos taurus | 50 | 20 | 0.8 | HL | train |
7dfc_H_L | 7dfc | crystal of arrestin2-v2rpp-3-fab30 complex | no | signaling protein | 2020-11-06 | 2021-07-28 | x-ray diffraction | 2.49 | 0.284 | 0.229 | 33888704 | 10.1038/s41467-021-22731-x | 0 | auth_asym_id | FabH:FabL | IGHV3 | IGKV1 | H | L | MFVFSIATNAYAEISEVQLVESGGGLVQPGGSLRLSCAASGFNVYSSSIHWVRQAPGKGLEWVASISSYYGYTYYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARSRQFWYSGLDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHHHHHHHH | MFVFSIATNAYASDIQMTQSPSSLSASVGDRVTITCRASQSVSSAVAWYQQKPGKAPKLLIYSASSLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQYKYVPVTFGQGTKVEIKRTVAAPSVFIFPPSDSQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | VQLVESGGGLVQPGGSLRLSCAASGFNVYSSSIHWVRQAPGKGLEWVASISSYYGYTYYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARSRQFWYSGLDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVE | DIQMTQSPSSLSASVGDRVTITCRASQSVSSAVAWYQQKPGKAPKLLIYSASSLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQYKYVPVTFGQGTKVEIKRTVAAPSVFIFPPSDSQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNR | 21.454115 | 22.612669 | 249 | 227 | 210 | 211 | 218 | 211 | 89 | fab30 heavy chain | fab30 light chain | mus musculus | mus musculus | A | protein | beta-arrestin-1 | bos taurus | 50 | 19 | 0.83 | HL | train |
7df1_F_J | 7df1 | crystal structure of human cd98 heavy chain extracellular domain in complex with s1-f4 scfv | no | antitumor protein | 2020-11-06 | 2022-12-07 | x-ray diffraction | 2.81 | 0.249 | 0.217 | 36424464 | 10.1038/s41551-022-00956-5 | 0 | auth_asym_id | VH:VL | IGHV1 | IGKV4 | F | J | QVQLVQSGAEVKKPGASVKVSCKASGYTFTSYYMHWVRQAPGQGLEWMGIINPSGGSTSYAQKFQGRVTMTRDTSTSTVYMELSSLRSEDTAVYYCARGYYDILTGSRPIFFDIWGQGTMVTVSSGGGGSGGGGSGGGGS | DIVMTQSPDSLAVSLGERATINCKSSQSVLYSSNNKNYLAWYQQKPGQPPKLLIYWASTRESGVPDRFSGSGSGTDFTLTISSLQAEDVAVYYCQQYYNTPITFGQGTRLEIKAAAHHHHHH | VQLVQSGAEVKKPGASVKVSCKASGYTFTSYYMHWVRQAPGQGLEWMGIINPSGGSTSYAQKFQGRVTMTRDTSTSTVYMELSSLRSEDTAVYYCARGYYDILTGSRPIFFDIWGQGTMVTVS | DIVMTQSPDSLAVSLGERATINCKSSQSVLYSSNNKNYLAWYQQKPGQPPKLLIYWASTRESGVPDRFSGSGSGTDFTLTISSLQAEDVAVYYCQQYYNTPITFGQGTRLEI | 14.119615 | 13.60465 | 140 | 122 | 123 | 112 | 123 | 112 | 43 | s1-f4 vh | igl c2062_light_igkv4-1_igkj5 | homo sapiens | homo sapiens | C | protein | 4f2 cell-surface antigen heavy chain | homo sapiens | 41 | 23 | 0.92 | HL | train |
7df1_G_K | 7df1 | crystal structure of human cd98 heavy chain extracellular domain in complex with s1-f4 scfv | no | antitumor protein | 2020-11-06 | 2022-12-07 | x-ray diffraction | 2.81 | 0.249 | 0.217 | 36424464 | 10.1038/s41551-022-00956-5 | 0 | auth_asym_id | VH:VL | IGHV1 | IGKV4 | G | K | QVQLVQSGAEVKKPGASVKVSCKASGYTFTSYYMHWVRQAPGQGLEWMGIINPSGGSTSYAQKFQGRVTMTRDTSTSTVYMELSSLRSEDTAVYYCARGYYDILTGSRPIFFDIWGQGTMVTVSSGGGGSGGGGSGGGGS | DIVMTQSPDSLAVSLGERATINCKSSQSVLYSSNNKNYLAWYQQKPGQPPKLLIYWASTRESGVPDRFSGSGSGTDFTLTISSLQAEDVAVYYCQQYYNTPITFGQGTRLEIKAAAHHHHHH | VQLVQSGAEVKKPGASVKVSCKASGYTFTSYYMHWVRQAPGQGLEWMGIINPSGGSTSYAQKFQGRVTMTRDTSTSTVYMELSSLRSEDTAVYYCARGYYDILTGSRPIFFDIWGQGTMVTVS | DIVMTQSPDSLAVSLGERATINCKSSQSVLYSSNNKNYLAWYQQKPGQPPKLLIYWASTRESGVPDRFSGSGSGTDFTLTISSLQAEDVAVYYCQQYYNTPITFGQGTRLEI | 14.113696 | 13.609544 | 140 | 122 | 123 | 112 | 123 | 112 | 42 | s1-f4 vh | igl c2062_light_igkv4-1_igkj5 | homo sapiens | homo sapiens | D | protein | 4f2 cell-surface antigen heavy chain | homo sapiens | 41 | 23 | 0.92 | HL | train |
7df1_E_I | 7df1 | crystal structure of human cd98 heavy chain extracellular domain in complex with s1-f4 scfv | no | antitumor protein | 2020-11-06 | 2022-12-07 | x-ray diffraction | 2.81 | 0.249 | 0.217 | 36424464 | 10.1038/s41551-022-00956-5 | 0 | auth_asym_id | VH:VL | IGHV1 | IGKV4 | E | I | QVQLVQSGAEVKKPGASVKVSCKASGYTFTSYYMHWVRQAPGQGLEWMGIINPSGGSTSYAQKFQGRVTMTRDTSTSTVYMELSSLRSEDTAVYYCARGYYDILTGSRPIFFDIWGQGTMVTVSSGGGGSGGGGSGGGGS | DIVMTQSPDSLAVSLGERATINCKSSQSVLYSSNNKNYLAWYQQKPGQPPKLLIYWASTRESGVPDRFSGSGSGTDFTLTISSLQAEDVAVYYCQQYYNTPITFGQGTRLEIKAAAHHHHHH | VQLVQSGAEVKKPGASVKVSCKASGYTFTSYYMHWVRQAPGQGLEWMGIINPSGGSTSYAQKFQGRVTMTRDTSTSTVYMELSSLRSEDTAVYYCARGYYDILTGSRPIFFDIWGQGTMVTVS | DIVMTQSPDSLAVSLGERATINCKSSQSVLYSSNNKNYLAWYQQKPGQPPKLLIYWASTRESGVPDRFSGSGSGTDFTLTISSLQAEDVAVYYCQQYYNTPITFGQGTRLEI | 14.125036 | 13.59821 | 140 | 122 | 123 | 112 | 123 | 112 | 41 | s1-f4 vh | igl c2062_light_igkv4-1_igkj5 | homo sapiens | homo sapiens | N.A. | N.A. | N.A. | N.A. | 0 | 0 | 0 | HL | train |
7df1_H_L | 7df1 | crystal structure of human cd98 heavy chain extracellular domain in complex with s1-f4 scfv | no | antitumor protein | 2020-11-06 | 2022-12-07 | x-ray diffraction | 2.81 | 0.249 | 0.217 | 36424464 | 10.1038/s41551-022-00956-5 | 0 | auth_asym_id | VH:VL | IGHV1 | IGKV4 | H | L | QVQLVQSGAEVKKPGASVKVSCKASGYTFTSYYMHWVRQAPGQGLEWMGIINPSGGSTSYAQKFQGRVTMTRDTSTSTVYMELSSLRSEDTAVYYCARGYYDILTGSRPIFFDIWGQGTMVTVSSGGGGSGGGGSGGGGS | DIVMTQSPDSLAVSLGERATINCKSSQSVLYSSNNKNYLAWYQQKPGQPPKLLIYWASTRESGVPDRFSGSGSGTDFTLTISSLQAEDVAVYYCQQYYNTPITFGQGTRLEIKAAAHHHHHH | VQLVQSGAEVKKPGASVKVSCKASGYTFTSYYMHWVRQAPGQGLEWMGIINPSGGSTSYAQKFQGRVTMTRDTSTSTVYMELSSLRSEDTAVYYCARGYYDILTGSRPIFFDIWGQGTMVTVS | DIVMTQSPDSLAVSLGERATINCKSSQSVLYSSNNKNYLAWYQQKPGQPPKLLIYWASTRESGVPDRFSGSGSGTDFTLTISSLQAEDVAVYYCQQYYNTPITFGQGTRLEI | 14.135836 | 13.593092 | 140 | 122 | 123 | 112 | 123 | 112 | 40 | s1-f4 vh | igl c2062_light_igkv4-1_igkj5 | homo sapiens | homo sapiens | N.A. | N.A. | N.A. | N.A. | 0 | 0 | 0 | HL | train |
7dfp_C_B | 7dfp | human dopamine d2 receptor in complex with spiperone | yes | membrane protein | 2020-11-09 | 2020-12-30 | x-ray diffraction | 3.1 | 0.216 | 0.185 | 33353947 | 10.1038/s41467-020-20221-0 | 0 | auth_asym_id | FabH:FabL | IGHV1 | IGKV1 | C | B | EVQLQQSGAELVKPGASVKISCKASGYSFTGYNMNWVKQSRGKSLEWIGYINPFYGTTNYNQRFKGKATLTVDKSSSTAYIQLNSLTSEDSAVYYCARRYLTGTGAMDYWGQGTSVTVSSAKTTPPSVYPLAPGCGDTTGSSVTLGCLVKGYFPESVTVTWNSGSLSSSVHTFPALLQSGLYTMSSSVTVPSSTWPSQTVTCSVAHPASSTTVDKKLEPS | DIVMTQTTSSLSASLGDRVTISCRASQDISNYLNWYQQKPDGTVKLLLYYTSRLHSGVPSRFSGSGSGTDYSLTISNLEPEDIATYYCQQYSKLPRTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNECN | EVQLQQSGAELVKPGASVKISCKASGYSFTGYNMNWVKQSRGKSLEWIGYINPFYGTTNYNQRFKGKATLTVDKSSSTAYIQLNSLTSEDSAVYYCARRYLTGTGAMDYWGQGTSVTVSSAKTTPPSVYPLAPGCGDTTGSSVTLGCLVKGYFPESVTVTWNSGSLSSSVHTFPALLQSGLYTMSSSVTVPSSTWPSQTVTCSVAHPASSTTVDKKLEPS | DIVMTQTTSSLSASLGDRVTISCRASQDISNYLNWYQQKPDGTVKLLLYYTSRLHSGVPSRFSGSGSGTDYSLTISNLEPEDIATYYCQQYSKLPRTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNECN | 23.134409 | 23.2133 | 220 | 215 | 220 | 215 | 220 | 215 | 106 | fabh | fabl | mus musculus | mus musculus | A | protein | d(2) dopamine receptor,soluble cytochrome b562 | homo sapiens | 43 | 16 | 0.73 | HL | train |
7kpb_H_L | 7kpb | human tnf-alpha tnfr1 complex bound to conformationally selective antibody | yes | cytokine/immune system | 2020-11-10 | 2021-01-13 | x-ray diffraction | 3 | 0.256 | 0.223 | 33495445 | 10.1038/s41467-020-20825-6 | 0 | auth_asym_id | FabH:FabL | IGHV3 | IGKV1 | H | L | DVQLVESGGGLVQPGRSLKLSCAASGFTFSAYYMAWVRQAPTKGLEWVASINYDGANTFYRDSVKGRFTVSRDNARSSLYLQMDSLRSEDTATYYCTTEAYGYNSNWFGYWGQGTLVTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVPRDC | DIQMTQSPASLPASPEEIVTITCQASQDIGNWLSWYQQKPGKSPQLLIYGATSLADGVPSRFSASRSGTQYSLKISRLQVEDFGIFYCLQGQSTPYTFGAGTKLELKRTDAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC | DVQLVESGGGLVQPGRSLKLSCAASGFTFSAYYMAWVRQAPTKGLEWVASINYDGANTFYRDSVKGRFTVSRDNARSSLYLQMDSLRSEDTATYYCTTEAYGYNSNWFGYWGQGTLVTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVPR | DIQMTQSPASLPASPEEIVTITCQASQDIGNWLSWYQQKPGKSPQLLIYGATSLADGVPSRFSASRSGTQYSLKISRLQVEDFGIFYCLQGQSTPYTFGAGTKLELKRTDAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNE | 22.85075 | 22.926735 | 223 | 214 | 212 | 213 | 221 | 213 | 94 | fab1974 - heavy chain | fab1974 - light chain | mus musculus | mus musculus | A;C | protein;protein | tumor necrosis factor;tumor necrosis factor | homo sapiens;homo sapiens | 49;22 | 23;7 | 0.85;0.78 | HL | train |
7kpg_H_L | 7kpg | blocking fab 25 anti-sirp-alpha antibody in complex with sirp-alpha variant 1 | no | signaling protein | 2020-11-11 | 2020-12-16 | x-ray diffraction | 2.27 | 0.282 | 0.234 | 33256806 | 10.1186/s13045-020-00989-w | 0 | auth_asym_id | FabH:FabL | IGHV3 | IGLV3 | H | L | DVQLVESGGGVVRPGESLRLSCEASGFTFSSNAMSWVRQAPGKGLEWVAGISSGSDTYYGDSVKGRLTISRDNSKNILYLQMNSLTAEDTAVYYCARETWNHLFDYWGQGTLVTVSSASTKGPSVFPLAPGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK | ELTQPPSVSVSPGQTARITCSGGSYSSYYYAWYQQKPGQAPVTLIYSDDKRPSNIPERFSGSSSGTTVTLTITGVQAEDEADYYCGGYDQSSYTNPFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS | DVQLVESGGGVVRPGESLRLSCEASGFTFSSNAMSWVRQAPGKGLEWVAGISSGSDTYYGDSVKGRLTISRDNSKNILYLQMNSLTAEDTAVYYCARETWNHLFDYWGQGTLVTVSSASTKGPSVFPLAPGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK | ELTQPPSVSVSPGQTARITCSGGSYSSYYYAWYQQKPGQAPVTLIYSDDKRPSNIPERFSGSSSGTTVTLTITGVQAEDEADYYCGGYDQSSYTNPFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS | 21.175823 | 23.03382 | 212 | 212 | 212 | 212 | 212 | 212 | 94 | heavy chain of fab 25 anti-sirp-alpha antibody | light chain of fab 25 anti-sirp-alpha antibody | homo sapiens | homo sapiens | S | protein | tyrosine-protein phosphatase non-receptor type substrate 1 | homo sapiens | 49 | 25 | 0.83 | HL | train |
7dge_C | 7dge | intermediate state of class c gpcr | yes | membrane protein | 2020-11-11 | 2021-09-22 | electron microscopy | 3.65 | N.A. | N.A. | 33278019 | 10.1007/s13238-020-00808-5 | 0 | auth_asym_id | VHH | IGHV3 | N.A. | C | N.A. | QVQLVESGGGLVQAGGSLRLSCAASGRTFTSYAMGWFRQAPGKERESVAAISSSGGSTHYADSVKGRFTISRDNSKNTVYLQMNSLKPEDTAVYYCAAAMYGSRWPDWEYDYWGQGTQVTVSS | N.A. | QVQLVESGGGLVQAGGSLRLSCAASGRTFTSYAMGWFRQAPGKERESVAAISSSGGSTHYADSVKGRFTISRDNSKNTVYLQMNSLKPEDTAVYYCAAAMYGSRWPDWEYDYWGQGTQVTVSS | N.A. | 13.616122 | 0 | 123 | 0 | 123 | 0 | 123 | 0 | 0 | nanobody | N.A. | lama glama | N.A. | A | protein | metabotropic glutamate receptor 1 | homo sapiens | 49 | 21 | 0.81 | H_only | train |
7dge_D | 7dge | intermediate state of class c gpcr | yes | membrane protein | 2020-11-11 | 2021-09-22 | electron microscopy | 3.65 | N.A. | N.A. | 33278019 | 10.1007/s13238-020-00808-5 | 0 | auth_asym_id | VHH | IGHV3 | N.A. | D | N.A. | QVQLVESGGGLVQAGGSLRLSCAASGRTFTSYAMGWFRQAPGKERESVAAISSSGGSTHYADSVKGRFTISRDNSKNTVYLQMNSLKPEDTAVYYCAAAMYGSRWPDWEYDYWGQGTQVTVSS | N.A. | QVQLVESGGGLVQAGGSLRLSCAASGRTFTSYAMGWFRQAPGKERESVAAISSSGGSTHYADSVKGRFTISRDNSKNTVYLQMNSLKPEDTAVYYCAAAMYGSRWPDWEYDYWGQGTQVTVSS | N.A. | 13.536191 | 0 | 123 | 0 | 123 | 0 | 123 | 0 | 0 | nanobody | N.A. | lama glama | N.A. | B | protein | metabotropic glutamate receptor 1 | homo sapiens | 43 | 18 | 0.86 | H_only | train |
7kpj_A_B | 7kpj | crystal structure of ruminococcus gnavus immunoglobulin binding protein in complex with 338e6 fab | no | immune system | 2020-11-11 | 2022-01-19 | x-ray diffraction | 2.1 | 0.266 | 0.229 | 34548394 | 10.1073/pnas.2023898118 | 0 | auth_asym_id | FabH:FabL | IGHV3 | IGKV1 | A | B | EVKLEESGGDLVKPGGSLKLSCAASGFTFSSYGMSWVRQTPDKRLEWVATISSGGSYTYYPDSVKGRFTISRDNAKNTLYLQMSSLKSEDTAMYYCARRGFYFDYWGQGTTLTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHT | ETTVTQSQKFMSTSVGDRVSVTCKASQNVGTNVAWYQQKPGQSPKALIYSASYRYSGVPDRFTGSGSGTDFTLTISNVQSEDLAEYFCQQYNSYPLTFGQGTKVEIKRTVAAPSVFIFPPSDSQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | EVKLEESGGDLVKPGGSLKLSCAASGFTFSSYGMSWVRQTPDKRLEWVATISSGGSYTYYPDSVKGRFTISRDNAKNTLYLQMSSLKSEDTAMYYCARRGFYFDYWGQGTTLTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK | ETTVTQSQKFMSTSVGDRVSVTCKASQNVGTNVAWYQQKPGQSPKALIYSASYRYSGVPDRFTGSGSGTDFTLTISNVQSEDLAEYFCQQYNSYPLTFGQGTKVEIKRTVAAPSVFIFPPSDSQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE | 20.472246 | 23.019775 | 224 | 214 | 210 | 213 | 217 | 213 | 86 | 338e6 fab heavy chain | 338e6 fab light chain kappa | mus musculus | mus musculus | N.A. | N.A. | N.A. | N.A. | 0 | 0 | 0 | HL | train |
7kpj_C_D | 7kpj | crystal structure of ruminococcus gnavus immunoglobulin binding protein in complex with 338e6 fab | no | immune system | 2020-11-11 | 2022-01-19 | x-ray diffraction | 2.1 | 0.266 | 0.229 | 34548394 | 10.1073/pnas.2023898118 | 0 | auth_asym_id | FabH:FabL | IGHV3 | IGKV1 | C | D | EVKLEESGGDLVKPGGSLKLSCAASGFTFSSYGMSWVRQTPDKRLEWVATISSGGSYTYYPDSVKGRFTISRDNAKNTLYLQMSSLKSEDTAMYYCARRGFYFDYWGQGTTLTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHT | ETTVTQSQKFMSTSVGDRVSVTCKASQNVGTNVAWYQQKPGQSPKALIYSASYRYSGVPDRFTGSGSGTDFTLTISNVQSEDLAEYFCQQYNSYPLTFGQGTKVEIKRTVAAPSVFIFPPSDSQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | EVKLEESGGDLVKPGGSLKLSCAASGFTFSSYGMSWVRQTPDKRLEWVATISSGGSYTYYPDSVKGRFTISRDNAKNTLYLQMSSLKSEDTAMYYCARRGFYFDYWGQGTTLTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEP | ETTVTQSQKFMSTSVGDRVSVTCKASQNVGTNVAWYQQKPGQSPKALIYSASYRYSGVPDRFTGSGSGTDFTLTISNVQSEDLAEYFCQQYNSYPLTFGQGTKVEIKRTVAAPSVFIFPPSDSQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFN | 20.287956 | 22.299482 | 224 | 214 | 208 | 201 | 216 | 210 | 84 | 338e6 fab heavy chain | 338e6 fab light chain kappa | mus musculus | mus musculus | N.A. | N.A. | N.A. | N.A. | 0 | 0 | 0 | HL | train |
7dh5_N | 7dh5 | dog beta3 adrenergic receptor bound to mirabegron in complex with a minigs heterotrimer | no | membrane protein | 2020-11-12 | 2021-08-04 | electron microscopy | 3.16 | N.A. | N.A. | 34314699 | 10.1016/j.molcel.2021.06.024 | 0 | auth_asym_id | VHH | IGHV3 | N.A. | N | N.A. | MGQVQLQESGGGLVQPGGSLRLSCAASGFTFSNYKMNWVRQAPGKGLEWVSDISQSGASISYTGSVKGRFTISRDNAKNTLYLQMNSLKPEDTAVYYCARCPAPFTRDCFDVTSTTYAYRGQGTQVTVSSLHHHHHH | N.A. | QVQLQESGGGLVQPGGSLRLSCAASGFTFSNYKMNWVRQAPGKGLEWVSDISQSGASISYTGSVKGRFTISRDNAKNTLYLQMNSLKPEDTAVYYCARCPAPFTRDCFDVTSTTYAYRGQGTQVTVSS | N.A. | 13.748479 | 0 | 137 | 0 | 128 | 0 | 128 | 0 | 0 | nanobody nb35 | N.A. | unidentified | N.A. | A;B | protein;protein | guanine nucleotide-binding protein g(s) subunit alpha isoforms short,guanine nucleotide-binding protein g(s) subunit alpha isoforms short;guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1 | homo sapiens;rattus norvegicus | 46;31 | 14;11 | 0.56;0.69 | H_only | train |
7kq7_H_L | 7kq7 | crystal structure of il21r in complex with an antibody fab fragment | no | protein binding/immune system | 2020-11-13 | 2021-04-07 | x-ray diffraction | 2.2 | 0.24 | 0.215 | 33557673 | 10.1080/19420862.2021.1883239 | 0 | auth_asym_id | FabH:FabL | IGHV3 | IGKV1 | H | L | EVQLVESGGGLVQPGRSLRLSCAASGVTFSDYHMAWVRQAPKKGLEWVATIIYDAARTYYRDSVKGRFTISRDNAKNSLYLQMNSLRAEDTAVYYCATWQTTGTPGWFAYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK | DIQMTQSPSSLSASVGDRVTITCGASQSVSISRFNLMHWYQQKPGHQPKLLIYRASNLASGVPSRFSGSGSGTDFTLTINPLQAEDFATYYCQQSRESPPTFGGGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC | EVQLVESGGGLVQPGRSLRLSCAASGVTFSDYHMAWVRQAPKKGLEWVATIIYDAARTYYRDSVKGRFTISRDNAKNSLYLQMNSLRAEDTAVYYCATWQTTGTPGWFAYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVE | DIQMTQSPSSLSASVGDRVTITCGASQSVSISRFNLMHWYQQKPGHQPKLLIYRASNLASGVPSRFSGSGSGTDFTLTINPLQAEDFATYYCQQSRESPPTFGGGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE | 20.623968 | 23.914988 | 222 | 218 | 212 | 217 | 220 | 217 | 86 | antibody heavy chain | antibody light chain | rattus norvegicus | rattus norvegicus | B | protein | interleukin-21 receptor | homo sapiens | 45 | 21 | 0.88 | HL | train |
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