PDB_ID_chain
stringlengths
6
10
PDB_ID
stringlengths
4
4
Title
stringlengths
4
230
Mutation(s)
stringclasses
2 values
Classification
stringclasses
305 values
Deposit_date
stringdate
1976-03-17 00:00:00
2026-01-20 00:00:00
Release_date
stringdate
1976-05-19 00:00:00
2026-02-25 00:00:00
Method
stringclasses
5 values
Resolution
stringclasses
459 values
R_free
stringclasses
227 values
R_work
stringclasses
211 values
PMID
stringlengths
4
8
DOI
stringlengths
4
68
Model_index
int64
0
76
Asym_ID_type
stringclasses
2 values
Ab_type
stringclasses
30 values
H_subgroup
stringclasses
8 values
L_subgroup
stringclasses
19 values
H_chain_ID
stringclasses
60 values
L_chain_ID
stringclasses
58 values
H_fas_seq
stringlengths
4
919
L_fas_seq
stringlengths
4
627
H_filled_pdb_seq
stringlengths
4
896
L_filled_pdb_seq
stringlengths
4
523
H_mean_radius
float64
0
79.7
L_mean_radius
float64
0
84.3
H_fas_seq_len
int64
0
919
L_fas_seq_len
int64
0
627
H_pdb_seq_len
int64
0
879
L_pdb_seq_len
int64
0
523
H_filled_seq_len
int64
0
896
L_filled_seq_len
int64
0
523
HL_inf_res_num
int64
0
175
H_mol_name
stringlengths
2
331
L_mol_name
stringlengths
2
151
H_species
stringclasses
68 values
L_species
stringclasses
42 values
Ag_chain_ID(s)
stringclasses
279 values
Ag_type(s)
stringclasses
16 values
Ag_mol_name(s)
stringlengths
2
390
Ag_species
stringclasses
743 values
Ab_ag_inf_res_num
stringlengths
1
11
CDR_inf_res_num
stringclasses
444 values
CDR_inf_res_ratio
stringlengths
1
19
hl_label
stringclasses
3 values
split
stringclasses
1 value
7sc1_H_L
7sc1
structure of the sars-cov-2 s 6p trimer in complex with the human neutralizing antibody fab fragment, r40-1g8
no
viral protein/immune system
2021-09-26
2022-02-02
electron microscopy
3.2
N.A.
N.A.
34973165
10.1016/j.chom.2021.12.010
0
auth_asym_id
VH:VL
IGHV3
IGKV1
H
L
EVQLVESGGGLVQPGGSLRLSCAASGLTVSSNYMRWVRQAPGKGLEWVSLIYAGGSTFYADSVKGRFIISRHNSKNILYLQMNSLRAEDTAVYFCARDLYVFGMDVWGQGTAVTVSAASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDKTH
DIQLTQSPSFLSASVGDRVTITCRASQGISSYLAWYQQKPGRAPKLLIYAASTLQSGVPSRFSGSGSGTVFTLTISSLQPEDFATYYCQQLNSDSSTFGQGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
EVQLVESGGGLVQPGGSLRLSCAASGLTVSSNYMRWVRQAPGKGLEWVSLIYAGGSTFYADSVKGRFIISRHNSKNILYLQMNSLRAEDTAVYFCARDLYVFGMDVWGQGTAVTVSA
DIQLTQSPSFLSASVGDRVTITCRASQGISSYLAWYQQKPGRAPKLLIYAASTLQSGVPSRFSGSGSGTVFTLTISSLQPEDFATYYCQQLNSDSSTFGQGTKLEIK
13.501994
13.018393
224
214
117
107
117
107
42
r40-1g8 fab heavy chain
r40-1g8 fab light chain
homo sapiens
homo sapiens
A
protein
spike glycoprotein
severe acute respiratory syndrome coronavirus 2
60
23
0.72
HL
train
7sc1_M_N
7sc1
structure of the sars-cov-2 s 6p trimer in complex with the human neutralizing antibody fab fragment, r40-1g8
no
viral protein/immune system
2021-09-26
2022-02-02
electron microscopy
3.2
N.A.
N.A.
34973165
10.1016/j.chom.2021.12.010
0
auth_asym_id
VH:VL
IGHV3
IGKV1
M
N
EVQLVESGGGLVQPGGSLRLSCAASGLTVSSNYMRWVRQAPGKGLEWVSLIYAGGSTFYADSVKGRFIISRHNSKNILYLQMNSLRAEDTAVYFCARDLYVFGMDVWGQGTAVTVSAASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDKTH
DIQLTQSPSFLSASVGDRVTITCRASQGISSYLAWYQQKPGRAPKLLIYAASTLQSGVPSRFSGSGSGTVFTLTISSLQPEDFATYYCQQLNSDSSTFGQGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
EVQLVESGGGLVQPGGSLRLSCAASGLTVSSNYMRWVRQAPGKGLEWVSLIYAGGSTFYADSVKGRFIISRHNSKNILYLQMNSLRAEDTAVYFCARDLYVFGMDVWGQGTAVTVSA
DIQLTQSPSFLSASVGDRVTITCRASQGISSYLAWYQQKPGRAPKLLIYAASTLQSGVPSRFSGSGSGTVFTLTISSLQPEDFATYYCQQLNSDSSTFGQGTKLEIK
13.499557
13.017463
224
214
117
107
117
107
43
r40-1g8 fab heavy chain
r40-1g8 fab light chain
homo sapiens
homo sapiens
B
protein
spike glycoprotein
severe acute respiratory syndrome coronavirus 2
58
23
0.77
HL
train
7sc1_P_Q
7sc1
structure of the sars-cov-2 s 6p trimer in complex with the human neutralizing antibody fab fragment, r40-1g8
no
viral protein/immune system
2021-09-26
2022-02-02
electron microscopy
3.2
N.A.
N.A.
34973165
10.1016/j.chom.2021.12.010
0
auth_asym_id
VH:VL
IGHV3
IGKV1
P
Q
EVQLVESGGGLVQPGGSLRLSCAASGLTVSSNYMRWVRQAPGKGLEWVSLIYAGGSTFYADSVKGRFIISRHNSKNILYLQMNSLRAEDTAVYFCARDLYVFGMDVWGQGTAVTVSAASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDKTH
DIQLTQSPSFLSASVGDRVTITCRASQGISSYLAWYQQKPGRAPKLLIYAASTLQSGVPSRFSGSGSGTVFTLTISSLQPEDFATYYCQQLNSDSSTFGQGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
EVQLVESGGGLVQPGGSLRLSCAASGLTVSSNYMRWVRQAPGKGLEWVSLIYAGGSTFYADSVKGRFIISRHNSKNILYLQMNSLRAEDTAVYFCARDLYVFGMDVWGQGTAVTVSA
DIQLTQSPSFLSASVGDRVTITCRASQGISSYLAWYQQKPGRAPKLLIYAASTLQSGVPSRFSGSGSGTVFTLTISSLQPEDFATYYCQQLNSDSSTFGQGTKLEIK
13.504573
13.017503
224
214
117
107
117
107
44
r40-1g8 fab heavy chain
r40-1g8 fab light chain
homo sapiens
homo sapiens
C
protein
spike glycoprotein
severe acute respiratory syndrome coronavirus 2
58
22
0.73
HL
train
7vie_E
7vie
cryo-em structure of gi coupled sphingosine 1-phosphate receptor bound with s1p
no
signaling protein
2021-09-26
2022-09-28
electron microscopy
2.86
N.A.
N.A.
35412894
10.1073/pnas.2117716119
0
auth_asym_id
scFv
N.A.
N.A.
E
N.A.
DVQLVESGGGLVQPGGSRKLSCSASGFAFSSFGMHWVRQAPEKGLEWVAYISSGSGTIYYADTVKGRFTISRDDPKNTLFLQMTSLRSEDTAMYYCVRSIYYYGSSPFDFWGQGTTLTVSSGGGGSGGGGSGGGGSDIVMTQATSSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLTISRLEAEDVGVYYCMQHLEYPLTFGAGTKLELKAAA
N.A.
DVQLVESGGGLVQPGGSRKLSCSASGFAFSSFGMHWVRQAPEKGLEWVAYISSGSGTIYYADTVKGRFTISRDDPKNTLFLQMTSLRSEDTAMYYCVRSIYYYGSSPFDFWGQGTTLTVSSGGGGSGGGGSGGGGSDIVMTQATSSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLTISRLEAEDVGVYYCMQHLEYPLTFGAGTKLELK
N.A.
17.407835
0
251
0
236
0
248
0
0
scfv16
N.A.
mus musculus
N.A.
A;D
protein;protein
guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1;guanine nucleotide-binding protein g(i) subunit alpha-1
homo sapiens;homo sapiens
23;33
9;19
0.75;0.9
H_only
train
7vif_E
7vif
cryo-em structure of gi coupled sphingosine 1-phosphate receptor bound with (s)-fty720-p
no
signaling protein
2021-09-26
2022-09-28
electron microscopy
2.83
N.A.
N.A.
35412894
10.1073/pnas.2117716119
0
auth_asym_id
scFv
N.A.
N.A.
E
N.A.
DVQLVESGGGLVQPGGSRKLSCSASGFAFSSFGMHWVRQAPEKGLEWVAYISSGSGTIYYADTVKGRFTISRDDPKNTLFLQMTSLRSEDTAMYYCVRSIYYYGSSPFDFWGQGTTLTVSSGGGGSGGGGSGGGGSDIVMTQATSSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLTISRLEAEDVGVYYCMQHLEYPLTFGAGTKLELKAAA
N.A.
DVQLVESGGGLVQPGGSRKLSCSASGFAFSSFGMHWVRQAPEKGLEWVAYISSGSGTIYYADTVKGRFTISRDDPKNTLFLQMTSLRSEDTAMYYCVRSIYYYGSSPFDFWGQGTTLTVSSGGGGSGGGGSGGGGSDIVMTQATSSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLTISRLEAEDVGVYYCMQHLEYPLTFGAGTKLELK
N.A.
17.409805
0
251
0
235
0
248
0
0
scfv16
N.A.
mus musculus
N.A.
A;D
protein;protein
guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1;guanine nucleotide-binding protein g(i) subunit alpha-1
homo sapiens;homo sapiens
22;34
8;21
0.73;0.95
H_only
train
7sbz_H_L
7sbz
jar5 fab bound to fhbp v1.1 crystallized in space group i422
no
immune system
2021-09-26
2022-10-05
x-ray diffraction
2.9
0.296
0.248
N.A.
N.A.
0
auth_asym_id
FabH:FabL
IGHV1
IGKV2
H
L
MEFGLSWVFLVAILEGVHCQVQMQQPGAELVKPGASVKLSCKASGYTFISYWMHWVKQRPGRGLEWIGRIAPDTGIIYYNEKFKNKATLTVDTPSSTAYMQLNSLTSEDSAVYYCARYLKYDGSTYRFDYWGQGTTLTVSSAKTTPPSVYPLAPGCGDTTGSSVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSPWPSETVTCNVAHPASSTKVDKKLVPRDCGGSENLYFQG
DIVMTQAAPSVPVTPGESVSISCRSSKSLLHSNGNTYLFWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTSFTLRISRVEAEDVGVYYCMQHLEYPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNR
QVQMQQPGAELVKPGASVKLSCKASGYTFISYWMHWVKQRPGRGLEWIGRIAPDTGIIYYNEKFKNKATLTVDTPSSTAYMQLNSLTSEDSAVYYCARYLKYDGSTYRFDYWGQGTTLTVSSAKTTPPSVYPLAPGCGDTTGSSVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSPWPSETVTCNVAHPASSTKVDKKLVPRD
DIVMTQAAPSVPVTPGESVSISCRSSKSLLHSNGNTYLFWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTSFTLRISRVEAEDVGVYYCMQHLEYPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNR
21.1561
23.523136
253
216
221
209
223
216
96
jar5 heavy chain
jar5 light chain
mus musculus
mus musculus
C
protein
factor h-binding protein
neisseria meningitidis serogroup b
43
21
0.88
HL
train
7sbz_A_B
7sbz
jar5 fab bound to fhbp v1.1 crystallized in space group i422
no
immune system
2021-09-26
2022-10-05
x-ray diffraction
2.9
0.296
0.248
N.A.
N.A.
0
auth_asym_id
FabH:FabL
IGHV1
IGKV2
A
B
MEFGLSWVFLVAILEGVHCQVQMQQPGAELVKPGASVKLSCKASGYTFISYWMHWVKQRPGRGLEWIGRIAPDTGIIYYNEKFKNKATLTVDTPSSTAYMQLNSLTSEDSAVYYCARYLKYDGSTYRFDYWGQGTTLTVSSAKTTPPSVYPLAPGCGDTTGSSVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSPWPSETVTCNVAHPASSTKVDKKLVPRDCGGSENLYFQG
DIVMTQAAPSVPVTPGESVSISCRSSKSLLHSNGNTYLFWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTSFTLRISRVEAEDVGVYYCMQHLEYPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNR
QVQMQQPGAELVKPGASVKLSCKASGYTFISYWMHWVKQRPGRGLEWIGRIAPDTGIIYYNEKFKNKATLTVDTPSSTAYMQLNSLTSEDSAVYYCARYLKYDGSTYRFDYWGQGTTLTVSSAKTTPPSVYPLAPGCGDTTGSSVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSPWPSETVTCNVAHPASSTKVDKKLVPRDC
DIVMTQAAPSVPVTPGESVSISCRSSKSLLHSNGNTYLFWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTSFTLRISRVEAEDVGVYYCMQHLEYPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNR
20.933033
23.4504
253
216
219
214
224
216
99
jar5 heavy chain
jar5 light chain
mus musculus
mus musculus
D
protein
factor h-binding protein
neisseria meningitidis serogroup b
45
20
0.83
HL
train
7sd3_K_N
7sd3
cytoplasmic tail deleted hiv-1 env bound with three 4e10 fabs
no
viral protein/immune system
2021-09-29
2022-11-09
electron microscopy
3.67
N.A.
N.A.
36302771
10.1038/s41467-022-34008-y
0
auth_asym_id
FabH:FabL
IGHV1
IGKV3
K
N
QVQLVQSGAEVKRPGSSVTVSCKASGGSFSTYALSWVRQAPGRGLEWMGGVIPLLTITNYAPRFQGRITITADRSTSTAYLELNSLRPEDTAVYYCAREGTTGWGWLGKPIGAFAHWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC
EIVLTQSPGTQSLSPGERATLSCRASQSVGNNKLAWYQQRPGQAPRLLIYGASSRPSGVADRFSGSGSGTDFTLTISRLEPEDFAVYYCQQYGQSLSTFGQGTKVEVKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE
QVQLVQSGAEVKRPGSSVTVSCKASGGSFSTYALSWVRQAPGRGLEWMGGVIPLLTITNYAPRFQGRITITADRSTSTAYLELNSLRPEDTAVYYCAREGTTGWGWLGKPIGAFAHWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEP
EIVLTQSPGTQSLSPGERATLSCRASQSVGNNKLAWYQQRPGQAPRLLIYGASSRPSGVADRFSGSGSGTDFTLTISRLEPEDFAVYYCQQYGQSLSTFGQGTKVEVKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE
21.95722
22.432175
230
214
220
214
227
214
97
4e10 fab heavy chain
4e10 fab light chain
homo sapiens
homo sapiens
B
protein
transmembrane protein gp41
hiv whole-genome vector aa1305#18
46
28
0.85
HL
train
7sd3_G_H
7sd3
cytoplasmic tail deleted hiv-1 env bound with three 4e10 fabs
no
viral protein/immune system
2021-09-29
2022-11-09
electron microscopy
3.67
N.A.
N.A.
36302771
10.1038/s41467-022-34008-y
0
auth_asym_id
FabH:FabL
IGHV1
IGKV3
G
H
QVQLVQSGAEVKRPGSSVTVSCKASGGSFSTYALSWVRQAPGRGLEWMGGVIPLLTITNYAPRFQGRITITADRSTSTAYLELNSLRPEDTAVYYCAREGTTGWGWLGKPIGAFAHWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC
EIVLTQSPGTQSLSPGERATLSCRASQSVGNNKLAWYQQRPGQAPRLLIYGASSRPSGVADRFSGSGSGTDFTLTISRLEPEDFAVYYCQQYGQSLSTFGQGTKVEVKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE
QVQLVQSGAEVKRPGSSVTVSCKASGGSFSTYALSWVRQAPGRGLEWMGGVIPLLTITNYAPRFQGRITITADRSTSTAYLELNSLRPEDTAVYYCAREGTTGWGWLGKPIGAFAHWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEP
EIVLTQSPGTQSLSPGERATLSCRASQSVGNNKLAWYQQRPGQAPRLLIYGASSRPSGVADRFSGSGSGTDFTLTISRLEPEDFAVYYCQQYGQSLSTFGQGTKVEVKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE
22.090353
22.562353
230
214
220
214
227
214
97
4e10 fab heavy chain
4e10 fab light chain
homo sapiens
homo sapiens
B;F
protein;protein
transmembrane protein gp41;transmembrane protein gp41
hiv whole-genome vector aa1305#18;hiv whole-genome vector aa1305#18
12;35
8;20
1.0;0.8
HL
train
7sd3_I_M
7sd3
cytoplasmic tail deleted hiv-1 env bound with three 4e10 fabs
no
viral protein/immune system
2021-09-29
2022-11-09
electron microscopy
3.67
N.A.
N.A.
36302771
10.1038/s41467-022-34008-y
0
auth_asym_id
FabH:FabL
IGHV1
IGKV3
I
M
QVQLVQSGAEVKRPGSSVTVSCKASGGSFSTYALSWVRQAPGRGLEWMGGVIPLLTITNYAPRFQGRITITADRSTSTAYLELNSLRPEDTAVYYCAREGTTGWGWLGKPIGAFAHWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC
EIVLTQSPGTQSLSPGERATLSCRASQSVGNNKLAWYQQRPGQAPRLLIYGASSRPSGVADRFSGSGSGTDFTLTISRLEPEDFAVYYCQQYGQSLSTFGQGTKVEVKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE
QVQLVQSGAEVKRPGSSVTVSCKASGGSFSTYALSWVRQAPGRGLEWMGGVIPLLTITNYAPRFQGRITITADRSTSTAYLELNSLRPEDTAVYYCAREGTTGWGWLGKPIGAFAHWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEP
EIVLTQSPGTQSLSPGERATLSCRASQSVGNNKLAWYQQRPGQAPRLLIYGASSRPSGVADRFSGSGSGTDFTLTISRLEPEDFAVYYCQQYGQSLSTFGQGTKVEVKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE
22.0328
22.696512
230
214
220
214
227
214
98
4e10 fab heavy chain
4e10 fab light chain
homo sapiens
homo sapiens
D
protein
transmembrane protein gp41
hiv whole-genome vector aa1305#18
40
21
0.81
HL
train
7seg_H_L
7seg
crystal structure of the complex of cd16a bound by an anti-cd16a fab
yes
antitumor protein
2021-09-30
2021-11-24
x-ray diffraction
2.16
0.234
0.189
35001074
10.1038/s41375-021-01478-w
0
auth_asym_id
FabH:FabL
IGHV1
IGLV3
H
L
MKKNIAFLLASMFVFSIATNAYAEVQLVQSGAEVKKPGESLKVSCKASGYTFTSYYMHWVRQAPGQGLEWMGAIEPMYGSTSYAQKFQGRVTMTRDTSTSTVYMELSSLRSEDTAVYYCARGSAYYYDFADYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCD
MKKNIAFLLASMFVFSIATNAYASYVLTQPSSVSVAPGQTATISCGGHNIGSKNVHWYQQRPGQSPVLVIYQDNKRPSGIPERFSGSNSGNTATLTISGTQAMDEADYYCQVWDNYSVLFGGGTKLTVLRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
EVQLVQSGAEVKKPGESLKVSCKASGYTFTSYYMHWVRQAPGQGLEWMGAIEPMYGSTSYAQKFQGRVTMTRDTSTSTVYMELSSLRSEDTAVYYCARGSAYYYDFADYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEP
SYVLTQPSSVSVAPGQTATISCGGHNIGSKNVHWYQQRPGQSPVLVIYQDNKRPSGIPERFSGSNSGNTATLTISGTQAMDEADYYCQVWDNYSVLFGGGTKLTVLRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRG
21.595825
23.125618
247
236
214
211
220
211
93
anti-cd16a fab heavy chain
anti-cd16a fab light chain
homo sapiens
homo sapiens
C
protein
low affinity immunoglobulin gamma fc region receptor iii-a
homo sapiens
44
19
0.83
HL
train
7seg_A_B
7seg
crystal structure of the complex of cd16a bound by an anti-cd16a fab
yes
antitumor protein
2021-09-30
2021-11-24
x-ray diffraction
2.16
0.234
0.189
35001074
10.1038/s41375-021-01478-w
0
auth_asym_id
FabH:FabL
IGHV1
IGLV3
A
B
MKKNIAFLLASMFVFSIATNAYAEVQLVQSGAEVKKPGESLKVSCKASGYTFTSYYMHWVRQAPGQGLEWMGAIEPMYGSTSYAQKFQGRVTMTRDTSTSTVYMELSSLRSEDTAVYYCARGSAYYYDFADYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCD
MKKNIAFLLASMFVFSIATNAYASYVLTQPSSVSVAPGQTATISCGGHNIGSKNVHWYQQRPGQSPVLVIYQDNKRPSGIPERFSGSNSGNTATLTISGTQAMDEADYYCQVWDNYSVLFGGGTKLTVLRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
EVQLVQSGAEVKKPGESLKVSCKASGYTFTSYYMHWVRQAPGQGLEWMGAIEPMYGSTSYAQKFQGRVTMTRDTSTSTVYMELSSLRSEDTAVYYCARGSAYYYDFADYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEP
SYVLTQPSSVSVAPGQTATISCGGHNIGSKNVHWYQQRPGQSPVLVIYQDNKRPSGIPERFSGSNSGNTATLTISGTQAMDEADYYCQVWDNYSVLFGGGTKLTVLRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRG
21.687634
23.102434
247
236
216
211
220
211
96
anti-cd16a fab heavy chain
anti-cd16a fab light chain
homo sapiens
homo sapiens
D
protein
low affinity immunoglobulin gamma fc region receptor iii-a
homo sapiens
41
17
0.85
HL
train
7sen_H_L
7sen
crystal structure of fab containing a fluorescent noncanonical amino acid with blocked excited state proton transfer
no
immune system
2021-09-30
2022-02-02
x-ray diffraction
2.09
0.253
0.185
35033559
10.1016/j.jmb.2022.167455
0
auth_asym_id
FabH:FabL
IGHV1
IGKV3
H
L
QVQLVQSGAEVVKPGASVKLSCKASGYIFTSYYMYWVKQAPGQGLELIGEINPSNGDTNFNEKFKSKATLTVDKSASTAYMELSSLRSEDTAVYYCTRSDGRNDMDSWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHT
DIVLTQSPATLSVSPGERATISCRASQRVSSSTYSYMHWYQQKPGQPPKLLIKYASNLESGVPARFSGSGSGTDFTLTISSVEPEDFATYYCQHSWEXPPTFGGGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
VQLVQSGAEVVKPGASVKLSCKASGYIFTSYYMYWVKQAPGQGLELIGEINPSNGDTNFNEKFKSKATLTVDKSASTAYMELSSLRSEDTAVYYCTRSDGRNDMDSWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHT
DIVLTQSPATLSVSPGERATISCRASQRVSSSTYSYMHWYQQKPGQPPKLLIKYASNLESGVPARFSGSGSGTDFTLTISSVEPEDFATYYCQHSWEXPPTFGGGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNR
21.209915
23.691895
226
218
220
214
225
215
100
5c8* fab heavy chain
5c8* fab light chain
homo sapiens
homo sapiens
N.A.
N.A.
N.A.
N.A.
0
0
0
HL
train
7sem_B_C
7sem
structure-based design of prefusion-stabilized human metapneumovirus fusion proteins
no
viral protein/immune system
2021-09-30
2022-02-16
x-ray diffraction
2.2
0.239
0.216
35288548
10.1038/s41467-022-28931-3
0
auth_asym_id
FabH:FabL
IGHV3
IGLV1
B
C
EVQLVESGGGLVKPGGSLRLSCAASGFTFSSYSMNWVRQAPGKGLEWVSSISASSSYSDYADSAKGRFTISRDNAKTSLFLQMNSLRAEDTAIYFCARARATGYSSITPYFDIWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCD
QSVVTQPPSVSGAPGQRVTISCTGSSSNIGAGYDVHWYQQLPGTAPKLLIYDNNNRPSGVPDRFSASKSGTSASLAITGLQAEDEADYYCQSYDRSLSGVFGTGTKVTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHKSYSCQVTHEGSTVEKTVAPTECS
EVQLVESGGGLVKPGGSLRLSCAASGFTFSSYSMNWVRQAPGKGLEWVSSISASSSYSDYADSAKGRFTISRDNAKTSLFLQMNSLRAEDTAIYFCARARATGYSSITPYFDIWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK
SVVTQPPSVSGAPGQRVTISCTGSSSNIGAGYDVHWYQQLPGTAPKLLIYDNNNRPSGVPDRFSASKSGTSASLAITGLQAEDEADYYCQSYDRSLSGVFGTGTKVTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHKSYSCQVTHEGSTVEKTVAP
22.613226
22.073187
228
216
214
204
225
211
96
mpe8 fab heavy chain
mpe8 fab light chain
homo sapiens
homo sapiens
F
protein
fusion glycoprotein f0
human metapneumovirus
51
21
0.84
HL
train
7vl9_S
7vl9
cryo-em structure of the ccl15(26-92) bound ccr1-gi complex
yes
membrane protein
2021-10-02
2022-03-23
electron microscopy
2.6
N.A.
N.A.
34949837
10.1038/s41589-021-00918-z
0
auth_asym_id
scFv
N.A.
N.A.
S
N.A.
DVQLVESGGGLVQPGGSRKLSCSASGFAFSSFGMHWVRQAPEKGLEWVAYISSGSGTIYYADTVKGRFTISRDDPKNTLFLQMTSLRSEDTAMYYCVRSIYYYGSSPFDFWGQGTTLTVSSGGGGSGGGGSGGGGSDIVMTQATSSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLTISRLEAEDVGVYYCMQHLEYPLTFGAGTKLELKGSLEVLFQ
N.A.
VQLVESGGGLVQPGGSRKLSCSASGFAFSSFGMHWVRQAPEKGLEWVAYISSGSGTIYYADTVKGRFTISRDDPKNTLFLQMTSLRSEDTAMYYCVRSIYYYGSSPFDFWGQGTTLTVSSGGGGSGGGGSGGGGSDIVMTQATSSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLTISRLEAEDVGVYYCMQHLEYPLTFGAGTKLEL
N.A.
17.329056
0
256
0
232
0
246
0
0
scfv16
N.A.
homo sapiens
N.A.
A;B
protein;protein
guanine nucleotide-binding protein g(i) subunit alpha-1;guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1
homo sapiens;homo sapiens
35;22
23;9
0.96;0.82
H_only
train
7vla_S
7vla
cryo-em structure of the ccl15(27-92) bound ccr1-gi complex
yes
membrane protein
2021-10-02
2022-03-23
electron microscopy
2.7
N.A.
N.A.
34949837
10.1038/s41589-021-00918-z
0
auth_asym_id
scFv
N.A.
N.A.
S
N.A.
DVQLVESGGGLVQPGGSRKLSCSASGFAFSSFGMHWVRQAPEKGLEWVAYISSGSGTIYYADTVKGRFTISRDDPKNTLFLQMTSLRSEDTAMYYCVRSIYYYGSSPFDFWGQGTTLTVSSGGGGSGGGGSGGGGSDIVMTQATSSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLTISRLEAEDVGVYYCMQHLEYPLTFGAGTKLELKGSLEVLFQ
N.A.
DVQLVESGGGLVQPGGSRKLSCSASGFAFSSFGMHWVRQAPEKGLEWVAYISSGSGTIYYADTVKGRFTISRDDPKNTLFLQMTSLRSEDTAMYYCVRSIYYYGSSPFDFWGQGTTLTVSSGGGGSGGGGSGGGGSDIVMTQATSSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLTISRLEAEDVGVYYCMQHLEYPLTFGAGTKLEL
N.A.
17.44855
0
256
0
234
0
247
0
0
scfv16
N.A.
homo sapiens
N.A.
A;B
protein;protein
guanine nucleotide-binding protein g(i) subunit alpha-1;guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1
homo sapiens;homo sapiens
32;23
21;9
1.0;0.75
H_only
train
7sfw_M_N
7sfw
cryoem structure of venezuelan equine encephalitis virus (veev) tc-83 strain vlp in complex with fab hveev-63 (focus refine of the asymmetric unit)
no
virus/immune system
2021-10-04
2022-03-16
electron microscopy
3.2
N.A.
N.A.
35297953
10.1084/jem.20212532
0
auth_asym_id
VH:VL
IGHV1
IGLV3
M
N
QVQLVQSGAEVKKPGASVKVSCKSSGYTFTNYIIHWVRQAPGQRLEWMGWINAGNGNTKYSQKFQGRISVTRDTSASAAYMELSSLKSEDTALYYCATLQMDYGGNGDLDYWGQGTLVTVSS
YELTQPPSVSVSPGQTARITCSGDALPKQYVYWYQQKPGQAPVLVIYKDSERPSGIPERFSGSSSGTTVTLTISGVQAEDDADYYCQAADSSNTEYVFGTGTKVTVL
QVQLVQSGAEVKKPGASVKVSCKSSGYTFTNYIIHWVRQAPGQRLEWMGWINAGNGNTKYSQKFQGRISVTRDTSASAAYMELSSLKSEDTALYYCATLQMDYGGNGDLDYWGQGTLVTVSS
YELTQPPSVSVSPGQTARITCSGDALPKQYVYWYQQKPGQAPVLVIYKDSERPSGIPERFSGSSSGTTVTLTISGVQAEDDADYYCQAADSSNTEYVFGTGTKVTVL
14.158601
13.224691
122
107
122
107
122
107
41
hveev-63 fab heavy chain
hveev-63 fab light chain
homo sapiens
homo sapiens
B
protein
spike glycoprotein e2
venezuelan equine encephalitis virus (strain tc-83)
39
18
0.78
HL
train
7sfw_O_P
7sfw
cryoem structure of venezuelan equine encephalitis virus (veev) tc-83 strain vlp in complex with fab hveev-63 (focus refine of the asymmetric unit)
no
virus/immune system
2021-10-04
2022-03-16
electron microscopy
3.2
N.A.
N.A.
35297953
10.1084/jem.20212532
0
auth_asym_id
VH:VL
IGHV1
IGLV3
O
P
QVQLVQSGAEVKKPGASVKVSCKSSGYTFTNYIIHWVRQAPGQRLEWMGWINAGNGNTKYSQKFQGRISVTRDTSASAAYMELSSLKSEDTALYYCATLQMDYGGNGDLDYWGQGTLVTVSS
YELTQPPSVSVSPGQTARITCSGDALPKQYVYWYQQKPGQAPVLVIYKDSERPSGIPERFSGSSSGTTVTLTISGVQAEDDADYYCQAADSSNTEYVFGTGTKVTVL
QVQLVQSGAEVKKPGASVKVSCKSSGYTFTNYIIHWVRQAPGQRLEWMGWINAGNGNTKYSQKFQGRISVTRDTSASAAYMELSSLKSEDTALYYCATLQMDYGGNGDLDYWGQGTLVTVSS
YELTQPPSVSVSPGQTARITCSGDALPKQYVYWYQQKPGQAPVLVIYKDSERPSGIPERFSGSSSGTTVTLTISGVQAEDDADYYCQAADSSNTEYVFGTGTKVTVL
14.115586
13.266706
122
107
122
107
122
107
47
hveev-63 fab heavy chain
hveev-63 fab light chain
homo sapiens
homo sapiens
E
protein
spike glycoprotein e2
venezuelan equine encephalitis virus (strain tc-83)
42
17
0.77
HL
train
7sfw_Q_R
7sfw
cryoem structure of venezuelan equine encephalitis virus (veev) tc-83 strain vlp in complex with fab hveev-63 (focus refine of the asymmetric unit)
no
virus/immune system
2021-10-04
2022-03-16
electron microscopy
3.2
N.A.
N.A.
35297953
10.1084/jem.20212532
0
auth_asym_id
VH:VL
IGHV1
IGLV3
Q
R
QVQLVQSGAEVKKPGASVKVSCKSSGYTFTNYIIHWVRQAPGQRLEWMGWINAGNGNTKYSQKFQGRISVTRDTSASAAYMELSSLKSEDTALYYCATLQMDYGGNGDLDYWGQGTLVTVSS
YELTQPPSVSVSPGQTARITCSGDALPKQYVYWYQQKPGQAPVLVIYKDSERPSGIPERFSGSSSGTTVTLTISGVQAEDDADYYCQAADSSNTEYVFGTGTKVTVL
QVQLVQSGAEVKKPGASVKVSCKSSGYTFTNYIIHWVRQAPGQRLEWMGWINAGNGNTKYSQKFQGRISVTRDTSASAAYMELSSLKSEDTALYYCATLQMDYGGNGDLDYWGQGTLVTVSS
YELTQPPSVSVSPGQTARITCSGDALPKQYVYWYQQKPGQAPVLVIYKDSERPSGIPERFSGSSSGTTVTLTISGVQAEDDADYYCQAADSSNTEYVFGTGTKVTVL
14.271227
13.23033
122
107
122
107
122
107
45
hveev-63 fab heavy chain
hveev-63 fab light chain
homo sapiens
homo sapiens
H
protein
spike glycoprotein e2
venezuelan equine encephalitis virus (strain tc-83)
37
18
0.86
HL
train
7sfw_S_T
7sfw
cryoem structure of venezuelan equine encephalitis virus (veev) tc-83 strain vlp in complex with fab hveev-63 (focus refine of the asymmetric unit)
no
virus/immune system
2021-10-04
2022-03-16
electron microscopy
3.2
N.A.
N.A.
35297953
10.1084/jem.20212532
0
auth_asym_id
VH:VL
IGHV1
IGLV3
S
T
QVQLVQSGAEVKKPGASVKVSCKSSGYTFTNYIIHWVRQAPGQRLEWMGWINAGNGNTKYSQKFQGRISVTRDTSASAAYMELSSLKSEDTALYYCATLQMDYGGNGDLDYWGQGTLVTVSS
YELTQPPSVSVSPGQTARITCSGDALPKQYVYWYQQKPGQAPVLVIYKDSERPSGIPERFSGSSSGTTVTLTISGVQAEDDADYYCQAADSSNTEYVFGTGTKVTVL
QVQLVQSGAEVKKPGASVKVSCKSSGYTFTNYIIHWVRQAPGQRLEWMGWINAGNGNTKYSQKFQGRISVTRDTSASAAYMELSSLKSEDTALYYCATLQMDYGGNGDLDYWGQGTLVTVSS
YELTQPPSVSVSPGQTARITCSGDALPKQYVYWYQQKPGQAPVLVIYKDSERPSGIPERFSGSSSGTTVTLTISGVQAEDDADYYCQAADSSNTEYVFGTGTKVTVL
14.221876
13.217659
122
107
122
107
122
107
45
hveev-63 fab heavy chain
hveev-63 fab light chain
homo sapiens
homo sapiens
K
protein
spike glycoprotein e2
venezuelan equine encephalitis virus (strain tc-83)
37
16
0.84
HL
train
7sg5_H_L
7sg5
structure of pfcsp peptide 21 with antibody cis43_var2
no
immune system
2021-10-05
2022-06-22
x-ray diffraction
1.4
0.218
0.185
35736810
10.1084/jem.20220323
0
auth_asym_id
FabH:FabL
IGHV1
IGKV4
H
L
QRQLVQSGAEVKKPGASVKVSCKASGYTFTSYAIHWVRQAPGQRLEWMGWIKAGNGNTRYSQKFQDRVTITRDTSTTTAYMELSSLRSEDTAVYYCALLTVLTPDDAFDIWGQGTMVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDK
DIVMTQSPDSLAVSLGERATINCKSSQSVFYSSNNKNYLAWYQQKPGQPPNLLIYWASTRQSGVPDRFSGSGSGTDFTLTISSLQAEDVAVYYCHQYYSSPLTFGGGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
QRQLVQSGAEVKKPGASVKVSCKASGYTFTSYAIHWVRQAPGQRLEWMGWIKAGNGNTRYSQKFQDRVTITRDTSTTTAYMELSSLRSEDTAVYYCALLTVLTPDDAFDIWGQGTMVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEP
DIVMTQSPDSLAVSLGERATINCKSSQSVFYSSNNKNYLAWYQQKPGQPPNLLIYWASTRQSGVPDRFSGSGSGTDFTLTISSLQAEDVAVYYCHQYYSSPLTFGGGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNR
20.562012
23.946882
226
220
221
217
221
217
98
cis43_var2 fab heavy chain
cis43_var2 fab light chain
homo sapiens
homo sapiens
A
peptide
pfcsp peptide 21
synthetic construct
36
17
0.71
HL
train
7sg6_H_L
7sg6
structure of pfcsp peptide 21 with antibody cis43_var10
no
immune system
2021-10-05
2022-06-22
x-ray diffraction
1.55
0.211
0.184
35736810
10.1084/jem.20220323
0
auth_asym_id
FabH:FabL
IGHV1
IGKV4
H
L
QRQLVQSGAEVKKPGASVKVSCKASGYTFTSYAIHWVRQAPGQRLEWMGWIKAGNGNTRYSQKFQDRVTITRDTSTTTAYMELSSLRSEDTAVYYCALLTVLTPDDAFDIWGQGTMVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDK
DIVMTQSPDSLAVSLGERATINCKSSQSVFYSSNNKNYLAWYQQKPGQPPNLLIYWASTRQSGVPDRFSGSGSGTDFTLTISSLQAEDVASYYCHQYYSSPLTFGGGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
QRQLVQSGAEVKKPGASVKVSCKASGYTFTSYAIHWVRQAPGQRLEWMGWIKAGNGNTRYSQKFQDRVTITRDTSTTTAYMELSSLRSEDTAVYYCALLTVLTPDDAFDIWGQGTMVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEP
DIVMTQSPDSLAVSLGERATINCKSSQSVFYSSNNKNYLAWYQQKPGQPPNLLIYWASTRQSGVPDRFSGSGSGTDFTLTISSLQAEDVASYYCHQYYSSPLTFGGGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNR
20.601387
24.029581
226
220
221
217
221
217
97
cis43_var10 fab heavy chain
cis43_var10 fab light chain
homo sapiens
homo sapiens
A
peptide
pfcsp peptide 21
synthetic construct
37
17
0.71
HL
train
7sgf_H_L
7sgf
lassa virus glycoprotein construct (josiah gpc-i53-50a) in complex with lava01 antibody
no
viral protein/immune system
2021-10-05
2022-10-12
electron microscopy
4.41
N.A.
N.A.
36400021
10.1016/j.chom.2022.10.018
0
auth_asym_id
VH:VL
IGHV3
IGKV1
H
L
QLLSCIALSLALVTNSQLEESGGGLVQTEGSLTLTCTASGFSFSNNDYICWVRQAPGKGLEWIGCIYSDYGFSFFATWAKDRFSGSKTSSTTVTLQGTGLTAADTATYFCVKTYVSRFGYYIRWDYFDLWGPGTLVIVSSGQ
NSDQVMTQTPSPVSAAVGGTVSISCQSSKSVHNENFLSWYQQKPGQRPKLLIYRASTLASGVPSRFKGSGSGTQFTLTISDVQCDDAATYYCAGGDIQSSDDVFGGGTEVVVQGDPVAPS
QLEESGGGLVQTEGSLTLTCTASGFSFSNNDYICWVRQAPGKGLEWIGCIYSDYGFSFFATWAKDRFSGSKTSSTTVTLQGTGLTAADTATYFCVKTYVSRFGYYIRWDYFDLWGPGTLVIV
VMTQTPSPVSAAVGGTVSISCQSSKSVHNENFLSWYQQKPGQRPKLLIYRASTLASGVPSRFKGSGSGTQFTLTISDVQCDDAATYYCAGGDIQSSDDVFGGGTEVV
13.994059
13.22224
142
120
122
107
122
107
57
lava01 mab - heavy chain
lava01 mab - light chain
oryctolagus cuniculus
oryctolagus cuniculus
A
protein
gpc-i53-50a
lassa mammarenavirus
23
12
1
HL
train
7sgf_J_K
7sgf
lassa virus glycoprotein construct (josiah gpc-i53-50a) in complex with lava01 antibody
no
viral protein/immune system
2021-10-05
2022-10-12
electron microscopy
4.41
N.A.
N.A.
36400021
10.1016/j.chom.2022.10.018
0
auth_asym_id
VH:VL
IGHV3
IGKV1
J
K
QLLSCIALSLALVTNSQLEESGGGLVQTEGSLTLTCTASGFSFSNNDYICWVRQAPGKGLEWIGCIYSDYGFSFFATWAKDRFSGSKTSSTTVTLQGTGLTAADTATYFCVKTYVSRFGYYIRWDYFDLWGPGTLVIVSSGQ
NSDQVMTQTPSPVSAAVGGTVSISCQSSKSVHNENFLSWYQQKPGQRPKLLIYRASTLASGVPSRFKGSGSGTQFTLTISDVQCDDAATYYCAGGDIQSSDDVFGGGTEVVVQGDPVAPS
QLEESGGGLVQTEGSLTLTCTASGFSFSNNDYICWVRQAPGKGLEWIGCIYSDYGFSFFATWAKDRFSGSKTSSTTVTLQGTGLTAADTATYFCVKTYVSRFGYYIRWDYFDLWGPGTLVIV
VMTQTPSPVSAAVGGTVSISCQSSKSVHNENFLSWYQQKPGQRPKLLIYRASTLASGVPSRFKGSGSGTQFTLTISDVQCDDAATYYCAGGDIQSSDDVFGGGTEVV
13.99408
13.222251
142
120
122
107
122
107
57
lava01 mab - heavy chain
lava01 mab - light chain
oryctolagus cuniculus
oryctolagus cuniculus
B
protein
gpc-i53-50a
lassa mammarenavirus
23
12
1
HL
train
7sgf_M_N
7sgf
lassa virus glycoprotein construct (josiah gpc-i53-50a) in complex with lava01 antibody
no
viral protein/immune system
2021-10-05
2022-10-12
electron microscopy
4.41
N.A.
N.A.
36400021
10.1016/j.chom.2022.10.018
0
auth_asym_id
VH:VL
IGHV3
IGKV1
M
N
QLLSCIALSLALVTNSQLEESGGGLVQTEGSLTLTCTASGFSFSNNDYICWVRQAPGKGLEWIGCIYSDYGFSFFATWAKDRFSGSKTSSTTVTLQGTGLTAADTATYFCVKTYVSRFGYYIRWDYFDLWGPGTLVIVSSGQ
NSDQVMTQTPSPVSAAVGGTVSISCQSSKSVHNENFLSWYQQKPGQRPKLLIYRASTLASGVPSRFKGSGSGTQFTLTISDVQCDDAATYYCAGGDIQSSDDVFGGGTEVVVQGDPVAPS
QLEESGGGLVQTEGSLTLTCTASGFSFSNNDYICWVRQAPGKGLEWIGCIYSDYGFSFFATWAKDRFSGSKTSSTTVTLQGTGLTAADTATYFCVKTYVSRFGYYIRWDYFDLWGPGTLVIV
VMTQTPSPVSAAVGGTVSISCQSSKSVHNENFLSWYQQKPGQRPKLLIYRASTLASGVPSRFKGSGSGTQFTLTISDVQCDDAATYYCAGGDIQSSDDVFGGGTEVV
13.994073
13.22222
142
120
122
107
122
107
57
lava01 mab - heavy chain
lava01 mab - light chain
oryctolagus cuniculus
oryctolagus cuniculus
C
protein
gpc-i53-50a
lassa mammarenavirus
23
12
1
HL
train
7vnb_A
7vnb
crystal structure of the sars-cov-2 rbd in complex with a human single domain antibody n3113
no
viral protein
2021-10-10
2021-11-24
x-ray diffraction
2.27
0.203
0.177
34732694
10.1038/s41392-021-00810-1
0
auth_asym_id
VH
IGHV3
N.A.
A
N.A.
EVQLVESGGGLVQPGGSLRLSCAASDFSFYDYEMSWVRQAPGKALEWIGSMYHSGRTYINPSLKSLVTISRDNSKNTLYLQMNSLRAEDTAMYYCVSNWASGSTGDYWGQGTLVTVSS
N.A.
EVQLVESGGGLVQPGGSLRLSCAASDFSFYDYEMSWVRQAPGKALEWIGSMYHSGRTYINPSLKSLVTISRDNSKNTLYLQMNSLRAEDTAMYYCVSNWASGSTGDYWGQGTLVTVSS
N.A.
13.506823
0
118
0
118
0
118
0
0
n3113
N.A.
homo sapiens
N.A.
B
protein
spike protein s1
severe acute respiratory syndrome coronavirus 2
48
12
0.52
H_only
train
7vnc_V
7vnc
structure of the sars-cov-2 spike glycoprotein in complex with a human single domain antibody n3113 (udd-state, state 1)
yes
viral protein
2021-10-10
2021-11-24
electron microscopy
3.7
N.A.
N.A.
34732694
10.1038/s41392-021-00810-1
0
auth_asym_id
VH
IGHV3
N.A.
V
N.A.
EVQLVESGGGLVQPGGSLRLSCAASDFSFYDYEMSWVRQAPGKALEWIGSMYHSGRTYINPSLKSLVTISRDNSKNTLYLQMNSLRAEDTAMYYCVSNWASGSTGDYWGQGTLVTVSS
N.A.
VQLVESGGGLVQPGGSLRLSCAASDFSFYDYEMSWVRQAPGKALEWIGSMYHSGRTYINPSLKSLVTISRDNSKNTLYLQMNSLRAEDTAMYYCVSNWASGSTGDYWGQGTLVTVS
N.A.
13.40548
0
118
0
116
0
116
0
0
n3113
N.A.
homo sapiens
N.A.
C
protein
spike glycoprotein
severe acute respiratory syndrome coronavirus 2
46
11
0.5
H_only
train
7vnd_D
7vnd
structure of the sars-cov-2 spike glycoprotein in complex with a human single domain antibody n3113 (uud-state, state 2)
yes
viral protein
2021-10-10
2021-11-24
electron microscopy
3.6
N.A.
N.A.
34732694
10.1038/s41392-021-00810-1
0
auth_asym_id
VH
IGHV3
N.A.
D
N.A.
EVQLVESGGGLVQPGGSLRLSCAASDFSFYDYEMSWVRQAPGKALEWIGSMYHSGRTYINPSLKSLVTISRDNSKNTLYLQMNSLRAEDTAMYYCVSNWASGSTGDYWGQGTLVTVSS
N.A.
VQLVESGGGLVQPGGSLRLSCAASDFSFYDYEMSWVRQAPGKALEWIGSMYHSGRTYINPSLKSLVTISRDNSKNTLYLQMNSLRAEDTAMYYCVSNWASGSTGDYWGQGTLVTVS
N.A.
14.154717
0
118
0
116
0
116
0
0
n3113
N.A.
homo sapiens
N.A.
A
protein
spike glycoprotein
severe acute respiratory syndrome coronavirus 2
51
12
0.52
H_only
train
7vnd_V
7vnd
structure of the sars-cov-2 spike glycoprotein in complex with a human single domain antibody n3113 (uud-state, state 2)
yes
viral protein
2021-10-10
2021-11-24
electron microscopy
3.6
N.A.
N.A.
34732694
10.1038/s41392-021-00810-1
0
auth_asym_id
VH
IGHV3
N.A.
V
N.A.
EVQLVESGGGLVQPGGSLRLSCAASDFSFYDYEMSWVRQAPGKALEWIGSMYHSGRTYINPSLKSLVTISRDNSKNTLYLQMNSLRAEDTAMYYCVSNWASGSTGDYWGQGTLVTVSS
N.A.
VQLVESGGGLVQPGGSLRLSCAASDFSFYDYEMSWVRQAPGKALEWIGSMYHSGRTYINPSLKSLVTISRDNSKNTLYLQMNSLRAEDTAMYYCVSNWASGSTGDYWGQGTLVTVS
N.A.
13.651745
0
118
0
116
0
116
0
0
n3113
N.A.
homo sapiens
N.A.
C
protein
spike glycoprotein
severe acute respiratory syndrome coronavirus 2
41
11
0.61
H_only
train
7vne_U
7vne
structure of the sars-cov-2 spike glycoprotein in complex with a human single domain antibody n3113.1 (uuu-state)
yes
viral protein
2021-10-10
2021-11-24
electron microscopy
3.5
N.A.
N.A.
34732694
10.1038/s41392-021-00810-1
0
auth_asym_id
VH
IGHV3
N.A.
U
N.A.
EVQLVESGGGLVQPGGSLRLSCAASDSSFYDYEMSWVRQAPGKAQEWIGSMYPSGRTYINPSLKSLVTISRDNSKNTLYLQLNSLRAEDTAMYYCVSNWASGSTGDYWGQGTLVTVSS
N.A.
VQLVESGGGLVQPGGSLRLSCAASDSSFYDYEMSWVRQAPGKAQEWIGSMYPSGRTYINPSLKSLVTISRDNSKNTLYLQLNSLRAEDTAMYYCVSNWASGSTGDYWGQGTLVTVS
N.A.
13.656137
0
118
0
116
0
116
0
0
n3113.1
N.A.
homo sapiens
N.A.
A
protein
spike glycoprotein
severe acute respiratory syndrome coronavirus 2
37
10
0.56
H_only
train
7vne_W
7vne
structure of the sars-cov-2 spike glycoprotein in complex with a human single domain antibody n3113.1 (uuu-state)
yes
viral protein
2021-10-10
2021-11-24
electron microscopy
3.5
N.A.
N.A.
34732694
10.1038/s41392-021-00810-1
0
auth_asym_id
VH
IGHV3
N.A.
W
N.A.
EVQLVESGGGLVQPGGSLRLSCAASDSSFYDYEMSWVRQAPGKAQEWIGSMYPSGRTYINPSLKSLVTISRDNSKNTLYLQLNSLRAEDTAMYYCVSNWASGSTGDYWGQGTLVTVSS
N.A.
VQLVESGGGLVQPGGSLRLSCAASDSSFYDYEMSWVRQAPGKAQEWIGSMYPSGRTYINPSLKSLVTISRDNSKNTLYLQLNSLRAEDTAMYYCVSNWASGSTGDYWGQGTLVTVS
N.A.
13.9437
0
118
0
116
0
116
0
0
n3113.1
N.A.
homo sapiens
N.A.
C
protein
spike glycoprotein
severe acute respiratory syndrome coronavirus 2
44
8
0.44
H_only
train
7vne_V
7vne
structure of the sars-cov-2 spike glycoprotein in complex with a human single domain antibody n3113.1 (uuu-state)
yes
viral protein
2021-10-10
2021-11-24
electron microscopy
3.5
N.A.
N.A.
34732694
10.1038/s41392-021-00810-1
0
auth_asym_id
VH
IGHV3
N.A.
V
N.A.
EVQLVESGGGLVQPGGSLRLSCAASDSSFYDYEMSWVRQAPGKAQEWIGSMYPSGRTYINPSLKSLVTISRDNSKNTLYLQLNSLRAEDTAMYYCVSNWASGSTGDYWGQGTLVTVSS
N.A.
VQLVESGGGLVQPGGSLRLSCAASDSSFYDYEMSWVRQAPGKAQEWIGSMYPSGRTYINPSLKSLVTISRDNSKNTLYLQLNSLRAEDTAMYYCVSNWASGSTGDYWGQGTLVTVS
N.A.
13.553277
0
118
0
116
0
116
0
0
n3113.1
N.A.
homo sapiens
N.A.
N.A.
N.A.
N.A.
N.A.
0
0
0
H_only
train
7vmz_H_L
7vmz
crystal structure of a human coronavirus 229e antibody c04 fab
no
immune system
2021-10-10
2022-10-12
x-ray diffraction
2.85
0.285
0.248
36333470
10.1038/s42003-022-04160-8
0
auth_asym_id
FabH:FabL
IGHV3
IGKV1
H
L
EVQLVESGGGLVQPGGSLRLSCAASGFNISSSYIHWVRQAPGKGLEWVASIYSSYGYTYYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARWWASVGGAGGGLDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHT
DIQMTQSPSSLSASVGDRVTITCRASQSVSSAVAWYQQKPGKAPKLLIYSASSLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQGYGWLITFGQGTKVEIKRTVAAPSVFIFPPSDSQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGECG
EVQLVESGGGLVQPGGSLRLSCAASGFNISSSYIHWVRQAPGKGLEWVASIYSSYGYTYYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARWWASVGGAGGGLDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK
IQMTQSPSSLSASVGDRVTITCRASQSVSSAVAWYQQKPGKAPKLLIYSASSLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQGYGWLITFGQGTKVEIKRTVAAPSVFIFPPSDSQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRG
21.28541
23.078718
231
215
223
211
224
211
106
c04 fab heavy chain
c04 fab light chain
homo sapiens
homo sapiens
N.A.
N.A.
N.A.
N.A.
0
0
0
HL
train
7vn9_A_B
7vn9
crystal structure of human coronavirus 229e spike protein receptor-binding domain in complex with c04 fab
no
viral protein/immune system
2021-10-10
2022-10-26
x-ray diffraction
4.49
0.288
0.273
36333470
10.1038/s42003-022-04160-8
0
auth_asym_id
FabH:FabL
IGHV3
IGKV1
A
B
EVQLVESGGGLVQPGGSLRLSCAASGFNISSSYIHWVRQAPGKGLEWVASIYSSYGYTYYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARWWASVGGAGGGLDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHT
DIQMTQSPSSLSASVGDRVTITCRASQSVSSAVAWYQQKPGKAPKLLIYSASSLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQGYGWLITFGQGTKVEIKRTVAAPSVFIFPPSDSQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGECG
VQLVESGGGLVQPGGSLRLSCAASGFNISSSYIHWVRQAPGKGLEWVASIYSSYGYTYYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARWWASVGGAGGGLDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVE
DIQMTQSPSSLSASVGDRVTITCRASQSVSSAVAWYQQKPGKAPKLLIYSASSLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQGYGWLITFGQGTKVEIKRTVAAPSVFIFPPSDSQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSS
21.286749
22.417381
231
215
215
198
221
203
93
c04 fab heavy chain
c04 fab light chain
homo sapiens
homo sapiens
C
protein
spike glycoprotein s1
human coronavirus 229e
49
17
0.85
HL
train
7vn9_H_L
7vn9
crystal structure of human coronavirus 229e spike protein receptor-binding domain in complex with c04 fab
no
viral protein/immune system
2021-10-10
2022-10-26
x-ray diffraction
4.49
0.288
0.273
36333470
10.1038/s42003-022-04160-8
0
auth_asym_id
FabH:FabL
IGHV3
IGKV1
H
L
EVQLVESGGGLVQPGGSLRLSCAASGFNISSSYIHWVRQAPGKGLEWVASIYSSYGYTYYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARWWASVGGAGGGLDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHT
DIQMTQSPSSLSASVGDRVTITCRASQSVSSAVAWYQQKPGKAPKLLIYSASSLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQGYGWLITFGQGTKVEIKRTVAAPSVFIFPPSDSQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGECG
VQLVESGGGLVQPGGSLRLSCAASGFNISSSYIHWVRQAPGKGLEWVASIYSSYGYTYYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARWWASVGGAGGGLDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEP
DIQMTQSPSSLSASVGDRVTITCRASQSVSSAVAWYQQKPGKAPKLLIYSASSLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQGYGWLITFGQGTKVEIKRTVAAPSVFIFPPSDSQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE
20.91622
23.501553
231
215
218
213
222
213
98
c04 fab heavy chain
c04 fab light chain
homo sapiens
homo sapiens
E
protein
spike glycoprotein s1
human coronavirus 229e
50
19
0.86
HL
train
7sht_H_L
7sht
structure of a partially disrupted ige high affinity receptor complex bound to an omalizumab variant
yes
immune system
2021-10-11
2021-12-15
electron microscopy
7.29
N.A.
N.A.
34862384
10.1038/s41467-021-27397-z
0
auth_asym_id
VH:VL
IGHV3
IGKV1
H
L
ASEVQLVESGGGLVQPDGSLRLSCAVSGYNITSGYSWNWIRQTPGKGLEWVASVTYDGSTNYNPSVKGRITISRDGSKNTFYLQMNSLRAEDTAVYYCAKGNNYFGHWHFAVWGQGTLVTVSS
GSDIQLTQSPSSLSASVGDRVTITCRASKSVDSDGDSYMNWYQQKPGRAPKLLIYAASYLESGVPSRFSGSGSGTHFTLTISSLQPEDFATYYCQQSHEDPYTFGQGTKVEIKGGSENLYFQGGSGHHHHHHHH
EVQLVESGGGLVQPDGSLRLSCAVSGYNITSGYSWNWIRQTPGKGLEWVASVTYDGSTNYNPSVKGRITISRDGSKNTFYLQMNSLRAEDTAVYYCAKGNNYFGHWHFAVWGQGTLVTVS
GSDIQLTQSPSSLSASVGDRVTITCRASKSVDSDGDSYMNWYQQKPGRAPKLLIYAASYLESGVPSRFSGSGSGTHFTLTISSLQPEDFATYYCQQSHEDPYTFGQGTKVEI
13.921163
13.864952
123
134
120
112
120
112
34
clone_7 variable fragment heavy chain
clone_7 variable fragment light chain
homo sapiens
homo sapiens
B
protein
immunoglobulin heavy constant epsilon
homo sapiens
31
12
0.71
HL
train
7sht_J_K
7sht
structure of a partially disrupted ige high affinity receptor complex bound to an omalizumab variant
yes
immune system
2021-10-11
2021-12-15
electron microscopy
7.29
N.A.
N.A.
34862384
10.1038/s41467-021-27397-z
0
auth_asym_id
VH:VL
IGHV3
IGKV1
J
K
ASEVQLVESGGGLVQPDGSLRLSCAVSGYNITSGYSWNWIRQTPGKGLEWVASVTYDGSTNYNPSVKGRITISRDGSKNTFYLQMNSLRAEDTAVYYCAKGNNYFGHWHFAVWGQGTLVTVSS
GSDIQLTQSPSSLSASVGDRVTITCRASKSVDSDGDSYMNWYQQKPGRAPKLLIYAASYLESGVPSRFSGSGSGTHFTLTISSLQPEDFATYYCQQSHEDPYTFGQGTKVEIKGGSENLYFQGGSGHHHHHHHH
EVQLVESGGGLVQPDGSLRLSCAVSGYNITSGYSWNWIRQTPGKGLEWVASVTYDGSTNYNPSVKGRITISRDGSKNTFYLQMNSLRAEDTAVYYCAKGNNYFGHWHFAVWGQGTLVTVS
GSDIQLTQSPSSLSASVGDRVTITCRASKSVDSDGDSYMNWYQQKPGRAPKLLIYAASYLESGVPSRFSGSGSGTHFTLTISSLQPEDFATYYCQQSHEDPYTFGQGTKVEI
14.208504
13.935845
123
134
120
112
120
112
35
clone_7 variable fragment heavy chain
clone_7 variable fragment light chain
homo sapiens
homo sapiens
D
protein
immunoglobulin heavy constant epsilon
homo sapiens
25
12
0.92
HL
train
7shu_C_D
7shu
ige-fc in complex with omalizumab variant c02
no
immune system
2021-10-11
2021-12-15
x-ray diffraction
2.75
0.275
0.22
34862384
10.1038/s41467-021-27397-z
0
auth_asym_id
VH:VL
IGHV3
IGKV1
C
D
SEVQLVESGGGLVQPDGSLRLSCAVSGYNITSGYSWNWIRQTPGKGLEWVASVTYDGSTNYNPSVKGRITISRDGSKNTFYLQMNSLRAEDTAVYYCAKGNNYFGHWHFAVWGQGTLVTVSSG
GSDIQLTQSPSSLSASVGDRVTITCRASKSVDSDGDSYMNWYQQKPGRAPKLLIYAASYLESGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQSHEDPYTFGQGTKVEIKGGSENLYFQGGSGHHHHHHHH
EVQLVESGGGLVQPDGSLRLSCAVSGYNITSGYSWNWIRQTPGKGLEWVASVTYDGSTNYNPSVKGRITISRDGSKNTFYLQMNSLRAEDTAVYYCAKGNNYFGHWHFAVWGQGTLVTVSSG
GSDIQLTQSPSSLSASVGDRVTITCRASKSVDSDGDSYMNWYQQKPGRAPKLLIYAASYLESGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQSHEDPYTFGQGTKVEIKGG
14.009914
13.689873
123
134
122
115
122
115
48
omalizumab variant c02 vh
omalizumab variant c02 vl
homo sapiens
homo sapiens
A
protein
immunoglobulin heavy constant epsilon
homo sapiens
41
14
0.74
HL
train
7shu_E_F
7shu
ige-fc in complex with omalizumab variant c02
no
immune system
2021-10-11
2021-12-15
x-ray diffraction
2.75
0.275
0.22
34862384
10.1038/s41467-021-27397-z
0
auth_asym_id
VH:VL
IGHV3
IGKV1
E
F
SEVQLVESGGGLVQPDGSLRLSCAVSGYNITSGYSWNWIRQTPGKGLEWVASVTYDGSTNYNPSVKGRITISRDGSKNTFYLQMNSLRAEDTAVYYCAKGNNYFGHWHFAVWGQGTLVTVSSG
GSDIQLTQSPSSLSASVGDRVTITCRASKSVDSDGDSYMNWYQQKPGRAPKLLIYAASYLESGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQSHEDPYTFGQGTKVEIKGGSENLYFQGGSGHHHHHHHH
EVQLVESGGGLVQPDGSLRLSCAVSGYNITSGYSWNWIRQTPGKGLEWVASVTYDGSTNYNPSVKGRITISRDGSKNTFYLQMNSLRAEDTAVYYCAKGNNYFGHWHFAVWGQGTLVTVS
GSDIQLTQSPSSLSASVGDRVTITCRASKSVDSDGDSYMNWYQQKPGRAPKLLIYAASYLESGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQSHEDPYTFGQGTKVEI
13.783912
13.336804
123
134
120
112
120
112
47
omalizumab variant c02 vh
omalizumab variant c02 vl
homo sapiens
homo sapiens
B
protein
immunoglobulin heavy constant epsilon
homo sapiens
46
19
0.76
HL
train
7shz_C_D
7shz
ige-fc in complex with hae
no
immune system
2021-10-11
2021-12-22
x-ray diffraction
3
0.235
0.186
34862384
10.1038/s41467-021-27397-z
0
auth_asym_id
VH:VL
IGHV3
IGKV1
C
D
SEVQLVESGGGLVQPGGSLRLSCAVSGYSITSGYSWNWIRQAPGKGLEWVASIKYSGETKYNPSVKGRITISRDDSKNTFYLQMNSLRAEDTAVYYCARGSHYFGHWHFAVWGQGTLVTVSSG
GGSDIQLTQSPSSLSASVGDRVTITCRASKPVDGEGDSYLNWYQQKPGKAPKLLIYAASYLESGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQSHEDPYTFGQGTKVEIKGGSENLYFQGGSGHHHHHHHH
SEVQLVESGGGLVQPGGSLRLSCAVSGYSITSGYSWNWIRQAPGKGLEWVASIKYSGETKYNPSVKGRITISRDDSKNTFYLQMNSLRAEDTAVYYCARGSHYFGHWHFAVWGQGTLVTVSS
GGSDIQLTQSPSSLSASVGDRVTITCRASKPVDGEGDSYLNWYQQKPGKAPKLLIYAASYLESGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQSHEDPYTFGQGTKVEIK
13.938478
13.516083
123
135
122
114
122
114
50
hae variable fragment heavy chain
hae variable fragment light chain
homo sapiens
homo sapiens
A
protein
ige fc
homo sapiens
39
14
0.74
HL
train
7shz_E_F
7shz
ige-fc in complex with hae
no
immune system
2021-10-11
2021-12-22
x-ray diffraction
3
0.235
0.186
34862384
10.1038/s41467-021-27397-z
0
auth_asym_id
VH:VL
IGHV3
IGKV1
E
F
SEVQLVESGGGLVQPGGSLRLSCAVSGYSITSGYSWNWIRQAPGKGLEWVASIKYSGETKYNPSVKGRITISRDDSKNTFYLQMNSLRAEDTAVYYCARGSHYFGHWHFAVWGQGTLVTVSSG
GGSDIQLTQSPSSLSASVGDRVTITCRASKPVDGEGDSYLNWYQQKPGKAPKLLIYAASYLESGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQSHEDPYTFGQGTKVEIKGGSENLYFQGGSGHHHHHHHH
EVQLVESGGGLVQPGGSLRLSCAVSGYSITSGYSWNWIRQAPGKGLEWVASIKYSGETKYNPSVKGRITISRDDSKNTFYLQMNSLRAEDTAVYYCARGSHYFGHWHFAVWGQGTLVTVSSG
GGSDIQLTQSPSSLSASVGDRVTITCRASKPVDGEGDSYLNWYQQKPGKAPKLLIYAASYLESGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQSHEDPYTFGQGTKVEIK
13.960247
13.512588
123
135
122
114
122
114
50
hae variable fragment heavy chain
hae variable fragment light chain
homo sapiens
homo sapiens
B
protein
ige fc
homo sapiens
36
17
1
HL
train
7shz_I_J
7shz
ige-fc in complex with hae
no
immune system
2021-10-11
2021-12-22
x-ray diffraction
3
0.235
0.186
34862384
10.1038/s41467-021-27397-z
0
auth_asym_id
VH:VL
IGHV3
IGKV1
I
J
SEVQLVESGGGLVQPGGSLRLSCAVSGYSITSGYSWNWIRQAPGKGLEWVASIKYSGETKYNPSVKGRITISRDDSKNTFYLQMNSLRAEDTAVYYCARGSHYFGHWHFAVWGQGTLVTVSSG
GGSDIQLTQSPSSLSASVGDRVTITCRASKPVDGEGDSYLNWYQQKPGKAPKLLIYAASYLESGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQSHEDPYTFGQGTKVEIKGGSENLYFQGGSGHHHHHHHH
EVQLVESGGGLVQPGGSLRLSCAVSGYSITSGYSWNWIRQAPGKGLEWVASIKYSGETKYNPSVKGRITISRDDSKNTFYLQMNSLRAEDTAVYYCARGSHYFGHWHFAVWGQGTLVTV
GSDIQLTQSPSSLSASVGDRVTITCRASKPVDGEGDSYLNWYQQKPGKAPKLLIYAASYLESGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQSHEDPYTFGQGTKVEIK
13.75387
13.476156
123
135
119
113
119
113
48
hae variable fragment heavy chain
hae variable fragment light chain
homo sapiens
homo sapiens
G
protein
ige fc
homo sapiens
44
19
0.83
HL
train
7shz_K_L
7shz
ige-fc in complex with hae
no
immune system
2021-10-11
2021-12-22
x-ray diffraction
3
0.235
0.186
34862384
10.1038/s41467-021-27397-z
0
auth_asym_id
VH:VL
IGHV3
IGKV1
K
L
SEVQLVESGGGLVQPGGSLRLSCAVSGYSITSGYSWNWIRQAPGKGLEWVASIKYSGETKYNPSVKGRITISRDDSKNTFYLQMNSLRAEDTAVYYCARGSHYFGHWHFAVWGQGTLVTVSSG
GGSDIQLTQSPSSLSASVGDRVTITCRASKPVDGEGDSYLNWYQQKPGKAPKLLIYAASYLESGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQSHEDPYTFGQGTKVEIKGGSENLYFQGGSGHHHHHHHH
EVQLVESGGGLVQPGGSLRLSCAVSGYSITSGYSWNWIRQAPGKGLEWVASIKYSGETKYNPSVKGRITISRDDSKNTFYLQMNSLRAEDTAVYYCARGSHYFGHWHFAVWGQGTLVTVSS
GSDIQLTQSPSSLSASVGDRVTITCRASKPVDGEGDSYLNWYQQKPGKAPKLLIYAASYLESGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQSHEDPYTFGQGTKVEIK
13.865098
13.428488
123
135
121
113
121
113
48
hae variable fragment heavy chain
hae variable fragment light chain
homo sapiens
homo sapiens
H
protein
ige fc
homo sapiens
39
18
0.95
HL
train
7voa_A
7voa
crystal structure of sars-cov-2 rbd in complex with arbd5
no
viral protein/antiviral protein
2021-10-13
2022-08-10
x-ray diffraction
1.8
0.226
0.186
35906408
10.1038/s41422-022-00700-3
0
auth_asym_id
VHH
IGHV3
N.A.
A
N.A.
QVQLVESGGGLVQPGGTLRLSCAASGFTLDYYAIGWFRQAPGKEREGVSCISGSGGITNYTDSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCAPVSHTVVAGCAFEAWTDFGSWGQGTQVTVSS
N.A.
QVQLVESGGGLVQPGGTLRLSCAASGFTLDYYAIGWFRQAPGKEREGVSCISGSGGITNYTDSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCAPVSHTVVAGCAFEAWTDFGSWGQGTQVTVSS
N.A.
13.606346
0
128
0
128
0
128
0
0
alpaca nanobody
N.A.
vicugna pacos
N.A.
B
protein
spike glycoprotein
severe acute respiratory syndrome coronavirus 2
41
17
0.85
H_only
train
7q0g_A_B
7q0g
crystal structure of the receptor binding domain of sars-cov-2 beta variant spike glycoprotein in complex with beta-49 and fi-3a fabs
yes
viral protein
2021-10-14
2021-12-22
x-ray diffraction
1.82
0.224
0.192
34921776
10.1016/j.chom.2021.11.013
0
auth_asym_id
FabH:FabL
IGHV1
IGKV3
A
B
EVQLVQSGAEVKKPGSSVKVSCKASGGTFSSSVISWVRQAPGQGLEWMGGIIPLFGSANYAQKFQGRVTITADESTSTAYMEMTSLRSEDTAVYYCAKVSQWALILFWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDK
AIRMTQSPGTLSLSPGERATLSCRASQSVSSSYLAWYQQKPGQAPRLLIYGASSRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQYGTSPSWTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
EVQLVQSGAEVKKPGSSVKVSCKASGGTFSSSVISWVRQAPGQGLEWMGGIIPLFGSANYAQKFQGRVTITADESTSTAYMEMTSLRSEDTAVYYCAKVSQWALILFWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK
AIRMTQSPGTLSLSPGERATLSCRASQSVSSSYLAWYQQKPGQAPRLLIYGASSRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQYGTSPSWTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
23.086378
22.519938
223
216
219
216
219
216
107
beta-49 fab heavy chain
beta-49 fab light chain
homo sapiens
homo sapiens
E
protein
spike protein s1
severe acute respiratory syndrome coronavirus 2
44
18
0.75
HL
train
7q0g_H_L
7q0g
crystal structure of the receptor binding domain of sars-cov-2 beta variant spike glycoprotein in complex with beta-49 and fi-3a fabs
yes
viral protein
2021-10-14
2021-12-22
x-ray diffraction
1.82
0.224
0.192
34921776
10.1016/j.chom.2021.11.013
0
auth_asym_id
FabH:FabL
IGHV3
IGKV1
H
L
EVQLLESGGGLIQPGGSLRLSCAASGFTVSSNYMSWVRQAPGKGLEWVSVIYSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARDHVRPGMNIWGQGTMVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDK
AIRMTQSPSSLSASVGDRVTITCQASQDISNYLNWYQQKPGKAPKLLIYDASNLETGVPSRFSGSGSGTDFTFTISSLQPEDIATYYCQQYDNLPVTFGGGTKVDIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
EVQLLESGGGLIQPGGSLRLSCAASGFTVSSNYMSWVRQAPGKGLEWVSVIYSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARDHVRPGMNIWGQGTMVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK
AIRMTQSPSSLSASVGDRVTITCQASQDISNYLNWYQQKPGKAPKLLIYDASNLETGVPSRFSGSGSGTDFTFTISSLQPEDIATYYCQQYDNLPVTFGGGTKVDIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
21.23744
23.107126
222
214
218
214
218
214
95
fi-3a fab heavy chain
fi-3a fab light chain
homo sapiens
homo sapiens
E
protein
spike protein s1
severe acute respiratory syndrome coronavirus 2
55
22
0.81
HL
train
7q0h_A_B
7q0h
crystal structure of the receptor binding domain of sars-cov-2 beta variant spike glycoprotein in complex with beta-50 and beta-54
yes
viral protein
2021-10-14
2021-12-22
x-ray diffraction
3.65
0.303
0.255
34921776
10.1016/j.chom.2021.11.013
0
auth_asym_id
FabH:FabL
IGHV1
IGKV3
A
B
EVQLVQSGAEVKKPGSSVKVSCKASRGTFNTYVFTWVRQAPGQGLEWMGGIIPFFGTADYAQKFQGRVTITADDSTSTAYMELSSLRSEDTAVYYCSRLSQWDLLPMWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDK
DIVMTQSPGTLSLSPGERATLSCRASQSFTSSYLAWYQQKPGQAPRLLIYGASSRATGIPDRFSGTGSGTDFTLTISRLEPEDFAVYYCQQYGTSPRMYTFGQGTKVDIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
QLVQSGAEVKKPGSSVKVSCKASRGTFNTYVFTWVRQAPGQGLEWMGGIIPFFGTADYAQKFQGRVTITADDSTSTAYMELSSLRSEDTAVYYCSRLSQWDLLPMWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK
DIVMTQSPGTLSLSPGERATLSCRASQSFTSSYLAWYQQKPGQAPRLLIYGASSRATGIPDRFSGTGSGTDFTLTISRLEPEDFAVYYCQQYGTSPRMYTFGQGTKVDIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE
22.920767
22.414845
223
217
212
216
217
216
95
beta-50 fab heavy chain
beta-50 fab light chain
homo sapiens
homo sapiens
E
protein
spike protein s1
severe acute respiratory syndrome coronavirus 2
40
16
0.8
HL
train
7q0h_H_L
7q0h
crystal structure of the receptor binding domain of sars-cov-2 beta variant spike glycoprotein in complex with beta-50 and beta-54
yes
viral protein
2021-10-14
2021-12-22
x-ray diffraction
3.65
0.303
0.255
34921776
10.1016/j.chom.2021.11.013
0
auth_asym_id
FabH:FabL
IGHV4
IGKV1
H
L
QVQLQESGPGLVKPSETLSLTCTVFGGSITSSNHYWVWIRQPPGKGLEWIGSMYYSGSTAYNPSLTNRVTISVDTSKNQFSLKLSSVTAADTAVYYCARQIGPKRPSQVADWFDPWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDK
DIQLTQSPSFLSASVGDRVTITCRASQGISSYLAWYQQKPGKAPKLLIYAASTLQSGVPSRFSGSGSGTEFTLTISSLQPEDFATYYCQQLNSYPLTFGGGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
QVQLQESGPGLVKPSETLSLTCTVFGGSITSSNHYWVWIRQPPGKGLEWIGSMYYSGSTAYNPSLTNRVTISVDTSKNQFSLKLSSVTAADTAVYYCARQIGPKRPSQVADWFDPWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC
DIQLTQSPSFLSASVGDRVTITCRASQGISSYLAWYQQKPGKAPKLLIYAASTLQSGVPSRFSGSGSGTEFTLTISSLQPEDFATYYCQQLNSYPLTFGGGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
21.6591
23.267092
231
214
229
214
229
214
106
beta-54 fab heavy chain
beta-54 fab light chain
homo sapiens
homo sapiens
E
protein
spike protein s1
severe acute respiratory syndrome coronavirus 2
30
15
0.83
HL
train
7q0i_H_L
7q0i
crystal structure of the n-terminal domain of sars-cov-2 beta variant spike glycoprotein in complex with beta-43
yes
viral protein
2021-10-14
2021-12-22
x-ray diffraction
2.39
0.242
0.202
34921776
10.1016/j.chom.2021.11.013
0
auth_asym_id
FabH:FabL
IGHV3
IGLV3
H
L
EVQLVESGGGVVQPGRSLRLSCAASGFTFSSYGMHWVRQAPGKGLEWVAVIWYDGSNNFYADSVKGRFTISRDNFKNTLYLQMNSLRAEDTAVYYCARSYCSGGFCFGYYYGLDVWGQGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDK
SYELTQPPSVSVAPGKTATITCGGNNIGTKSVHWYQQKPGQAPVLVIYYNSDRPSGIPERFSGSNSGNTVTLTISRVEAGDEADYYCQVWDSGSDHYVFGTGTKVTVVGQPKANPTVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS
EVQLVESGGGVVQPGRSLRLSCAASGFTFSSYGMHWVRQAPGKGLEWVAVIWYDGSNNFYADSVKGRFTISRDNFKNTLYLQMNSLRAEDTAVYYCARSYCSGGFCFGYYYGLDVWGQGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC
SYELTQPPSVSVAPGKTATITCGGNNIGTKSVHWYQQKPGQAPVLVIYYNSDRPSGIPERFSGSNSGNTVTLTISRVEAGDEADYYCQVWDSGSDHYVFGTGTKVTVVGQPKANPTVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTE
21.622103
23.592207
231
214
229
212
229
212
101
beta-43 heavy chain
beta-43 fab light chain
homo sapiens
homo sapiens
C
protein
spike protein s1
severe acute respiratory syndrome coronavirus 2
52
23
0.79
HL
train
7q0i_A_B
7q0i
crystal structure of the n-terminal domain of sars-cov-2 beta variant spike glycoprotein in complex with beta-43
yes
viral protein
2021-10-14
2021-12-22
x-ray diffraction
2.39
0.242
0.202
34921776
10.1016/j.chom.2021.11.013
0
auth_asym_id
FabH:FabL
IGHV3
IGLV3
A
B
EVQLVESGGGVVQPGRSLRLSCAASGFTFSSYGMHWVRQAPGKGLEWVAVIWYDGSNNFYADSVKGRFTISRDNFKNTLYLQMNSLRAEDTAVYYCARSYCSGGFCFGYYYGLDVWGQGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDK
SYELTQPPSVSVAPGKTATITCGGNNIGTKSVHWYQQKPGQAPVLVIYYNSDRPSGIPERFSGSNSGNTVTLTISRVEAGDEADYYCQVWDSGSDHYVFGTGTKVTVVGQPKANPTVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS
EVQLVESGGGVVQPGRSLRLSCAASGFTFSSYGMHWVRQAPGKGLEWVAVIWYDGSNNFYADSVKGRFTISRDNFKNTLYLQMNSLRAEDTAVYYCARSYCSGGFCFGYYYGLDVWGQGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC
SYELTQPPSVSVAPGKTATITCGGNNIGTKSVHWYQQKPGQAPVLVIYYNSDRPSGIPERFSGSNSGNTVTLTISRVEAGDEADYYCQVWDSGSDHYVFGTGTKVTVVGQPKANPTVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTE
23.500969
23.942457
231
214
229
212
229
212
108
beta-43 heavy chain
beta-43 fab light chain
homo sapiens
homo sapiens
D
protein
spike protein s1
severe acute respiratory syndrome coronavirus 2
55
24
0.8
HL
train
7sj0_B_L
7sj0
antibody a7v3 bound to n-terminal domain of the spike
yes
viral protein/immune system
2021-10-15
2022-11-16
electron microscopy
3.36
N.A.
N.A.
N.A.
N.A.
0
auth_asym_id
VH:VL
IGHV1
IGLV1
B
L
QVQLVQSGAEVKKPGASVKVSCKVSGYTLTELSMHWVRQAPGKGLEWMGGFDPEDGETIYAQKFQGRVTMTEDTSTDTAYMELSSLRSEDTAVYYCATGSPFDRTQNWFDPWGQGTLVTVSS
QSVVTQPPSVSAAPGQKVTISCSGSSSNIGNNYVSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSKSGTSATLGITGLQTGDEADYYCGTWDSSLSAVVFGGGTKLTVL
QVQLVQSGAEVKKPGASVKVSCKVSGYTLTELSMHWVRQAPGKGLEWMGGFDPEDGETIYAQKFQGRVTMTEDTSTDTAYMELSSLRSEDTAVYYCATGSPFDRTQNWFDPWGQGTLVTV
VVTQPPSVSAAPGQKVTISCSGSSSNIGNNYVSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSKSGTSATLGITGLQTGDEADYYCGTWDSSLSAVVFGGGTKLTVL
14.490572
13.809305
122
110
120
108
120
108
41
a7v3 fab heavy chain
a7v3 fab light chain
homo sapiens
homo sapiens
A
protein
spike glycoprotein
severe acute respiratory syndrome coronavirus 2
38
19
0.79
HL
train
7sjs_H_L
7sjs
crystal structure of sars-cov-2 spike stem helix peptide in complex with neutralizing antibody cc40.8
no
immune system
2021-10-18
2022-01-12
x-ray diffraction
1.61
0.206
0.174
35133175
10.1126/scitranslmed.abi9215
0
auth_asym_id
FabH:FabL
IGHV3
IGLV3
H
L
EVQLLESGGGLVQPGGSLRLSCAASGFTFSSYVMTWARQAPGKGLEWVSAISGTGYTYYADSVKGRFTVSRDNSKNTLFLQMSSLRAEDTAVYYCAITMAPVVWGQGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSC
SYELTQPPSVSVSPGQTARITCSGDALPKRYAYWYQQKSGQAPILVIYEDKKRPSGIPERLSGSKSGTVATLTISGAQVEDEADYYCYSTDSSGNHAVFGGGTQLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHKSYSCQVTHEGSTVEKTVAPTECS
EVQLLESGGGLVQPGGSLRLSCAASGFTFSSYVMTWARQAPGKGLEWVSAISGTGYTYYADSVKGRFTVSRDNSKNTLFLQMSSLRAEDTAVYYCAITMAPVVWGQGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPK
SYELTQPPSVSVSPGQTARITCSGDALPKRYAYWYQQKSGQAPILVIYEDKKRPSGIPERLSGSKSGTVATLTISGAQVEDEADYYCYSTDSSGNHAVFGGGTQLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHKSYSCQVTHEGSTVEKTVAPT
20.51643
23.851576
217
214
208
211
215
211
87
cc40.8 fab heavy chain
cc40.8 fab light chain
homo sapiens
homo sapiens
C
peptide
stem helix peptide of spike protein s2'
severe acute respiratory syndrome coronavirus 2
52
24
0.73
HL
train
7vpy_A
7vpy
crystal structure of the neutralizing nanobody p86 against sars-cov-2
no
immune system
2021-10-18
2022-07-20
x-ray diffraction
1.6
0.213
0.177
35794202
10.1038/s42003-022-03630-3
0
auth_asym_id
VHH
IGHV3
N.A.
A
N.A.
MKYLLPTAAAGLLLLAAQPAMAQVQLQESGGGLVQAGGSLRLSCVASGRTFSSLNIVWFRQAPGKERKFVAAINDRNTAYAESVKGRFTISRDNAKNTVHLQMNSLKPEDTAVYYCHSADVNGGMDYWGKGTQVTVSSHHHHHH
N.A.
VQLQESGGGLVQAGGSLRLSCVASGRTFSSLNIVWFRQAPGKERKFVAAINDRNTAYAESVKGRFTISRDNAKNTVHLQMNSLKPEDTAVYYCHSADVNGGMDYWGKGTQVTVSSH
N.A.
13.772889
0
144
0
116
0
116
0
0
nanobody
N.A.
vicugna pacos
N.A.
N.A.
N.A.
N.A.
N.A.
0
0
0
H_only
train
7vpy_B
7vpy
crystal structure of the neutralizing nanobody p86 against sars-cov-2
no
immune system
2021-10-18
2022-07-20
x-ray diffraction
1.6
0.213
0.177
35794202
10.1038/s42003-022-03630-3
0
auth_asym_id
VHH
IGHV3
N.A.
B
N.A.
MKYLLPTAAAGLLLLAAQPAMAQVQLQESGGGLVQAGGSLRLSCVASGRTFSSLNIVWFRQAPGKERKFVAAINDRNTAYAESVKGRFTISRDNAKNTVHLQMNSLKPEDTAVYYCHSADVNGGMDYWGKGTQVTVSSHHHHHH
N.A.
VQLQESGGGLVQAGGSLRLSCVASGRTFSSLNIVWFRQAPGKERKFVAAINDRNTAYAESVKGRFTISRDNAKNTVHLQMNSLKPEDTAVYYCHSADVNGGMDYWGKGTQVTVSSH
N.A.
13.773714
0
144
0
116
0
116
0
0
nanobody
N.A.
vicugna pacos
N.A.
N.A.
N.A.
N.A.
N.A.
0
0
0
H_only
train
7vq0_D
7vq0
cryo-em structure of the sars-cov-2 spike protein (2-up rbd) bound to neutralizing nanobodies p86
yes
viral protein/immune system
2021-10-18
2022-07-20
electron microscopy
3.03
N.A.
N.A.
35794202
10.1038/s42003-022-03630-3
0
auth_asym_id
VHH
IGHV3
N.A.
D
N.A.
QVQLQESGGGLVQAGGSLRLSCVASGRTFSSLNIVWFRQAPGKERKFVAAINDRNTAYAESVKGRFTISRDNAKNTVHLQMNSLKPEDTAVYYCHSADVNGGMDYWGKGTQVTVSSHHHHHH
N.A.
VQLQESGGGLVQAGGSLRLSCVASGRTFSSLNIVWFRQAPGKERKFVAAINDRNTAYAESVKGRFTISRDNAKNTVHLQMNSLKPEDTAVYYCHSADVNGGMDYWGKGTQVTVSSH
N.A.
13.990181
0
122
0
116
0
116
0
0
neutralizing nanobody p86
N.A.
vicugna pacos
N.A.
A;B
protein;protein
spike glycoprotein;spike glycoprotein
severe acute respiratory syndrome coronavirus 2;severe acute respiratory syndrome coronavirus 2
57;13
12;5
0.4;1.0
H_only
train
7vq0_E
7vq0
cryo-em structure of the sars-cov-2 spike protein (2-up rbd) bound to neutralizing nanobodies p86
yes
viral protein/immune system
2021-10-18
2022-07-20
electron microscopy
3.03
N.A.
N.A.
35794202
10.1038/s42003-022-03630-3
0
auth_asym_id
VHH
IGHV3
N.A.
E
N.A.
QVQLQESGGGLVQAGGSLRLSCVASGRTFSSLNIVWFRQAPGKERKFVAAINDRNTAYAESVKGRFTISRDNAKNTVHLQMNSLKPEDTAVYYCHSADVNGGMDYWGKGTQVTVSSHHHHHH
N.A.
VQLQESGGGLVQAGGSLRLSCVASGRTFSSLNIVWFRQAPGKERKFVAAINDRNTAYAESVKGRFTISRDNAKNTVHLQMNSLKPEDTAVYYCHSADVNGGMDYWGKGTQVTVSSH
N.A.
13.94233
0
122
0
116
0
116
0
0
neutralizing nanobody p86
N.A.
vicugna pacos
N.A.
B
protein
spike glycoprotein
severe acute respiratory syndrome coronavirus 2
46
9
0.38
H_only
train
7vq0_F
7vq0
cryo-em structure of the sars-cov-2 spike protein (2-up rbd) bound to neutralizing nanobodies p86
yes
viral protein/immune system
2021-10-18
2022-07-20
electron microscopy
3.03
N.A.
N.A.
35794202
10.1038/s42003-022-03630-3
0
auth_asym_id
VHH
IGHV3
N.A.
F
N.A.
QVQLQESGGGLVQAGGSLRLSCVASGRTFSSLNIVWFRQAPGKERKFVAAINDRNTAYAESVKGRFTISRDNAKNTVHLQMNSLKPEDTAVYYCHSADVNGGMDYWGKGTQVTVSSHHHHHH
N.A.
VQLQESGGGLVQAGGSLRLSCVASGRTFSSLNIVWFRQAPGKERKFVAAINDRNTAYAESVKGRFTISRDNAKNTVHLQMNSLKPEDTAVYYCHSADVNGGMDYWGKGTQVTVSSH
N.A.
13.975858
0
122
0
116
0
116
0
0
neutralizing nanobody p86
N.A.
vicugna pacos
N.A.
N.A.
N.A.
N.A.
N.A.
0
0
0
H_only
train
7sjm_H_L
7sjm
anti-htra1 fab15h6.v4
no
immune system
2021-10-18
2022-09-07
x-ray diffraction
1.8
0.202
0.171
36064790
10.1038/s41467-022-32760-9
0
auth_asym_id
FabH:FabL
IGHV1
IGKV1
H
L
EVQLVQSGAEVKKPGASVKVSCKASGYKFTDSEMHWVRQAPGQGLEWIGGVDPETEGAAYNQKFKGRATITRDTSTSTAYLELSSLRSEDTAVYYCTRGYDYDYALDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHT
DIQMTQSPSSLSASVGDRVTITCRASSSVEFIHWYQQKPGKAPKPLISATSNLASGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQWSSAPWTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
EVQLVQSGAEVKKPGASVKVSCKASGYKFTDSEMHWVRQAPGQGLEWIGGVDPETEGAAYNQKFKGRATITRDTSTSTAYLELSSLRSEDTAVYYCTRGYDYDYALDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKS
DIQMTQSPSSLSASVGDRVTITCRASSSVEFIHWYQQKPGKAPKPLISATSNLASGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQWSSAPWTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE
20.693785
23.26683
227
213
221
212
221
212
103
heavy chain
light chain
homo sapiens
homo sapiens
N.A.
N.A.
N.A.
N.A.
0
0
0
HL
train
7sjn_H_L
7sjn
htra1:fab15h6.v4 complex
no
hydrolase/immune system
2021-10-18
2022-09-07
electron microscopy
3.4
N.A.
N.A.
36064790
10.1038/s41467-022-32760-9
0
auth_asym_id
VH:VL
IGHV1
IGKV1
H
L
EVQLVQSGAEVKKPGASVKVSCKASGYKFTDSEMHWVRQAPGQGLEWIGGVDPETEGAAYNQKFKGRATITRDTSTSTAYLELSSLRSEDTAVYYCTRGYDYDYALDYWGQGTLVTV
DIQMTQSPSSLSASVGDRVTITCRASSSVEFIHWYQQKPGKAPKPLISATSNLASGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQWSSAPWTFGQGTKVEIK
EVQLVQSGAEVKKPGASVKVSCKASGYKFTDSEMHWVRQAPGQGLEWIGGVDPETEGAAYNQKFKGRATITRDTSTSTAYLELSSLRSEDTAVYYCTRGYDYDYALDYWGQGTLVTV
DIQMTQSPSSLSASVGDRVTITCRASSSVEFIHWYQQKPGKAPKPLISATSNLASGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQWSSAPWTFGQGTKVEIK
13.899453
13.136225
117
106
117
106
117
106
42
fab15h6.v4 heavy chain
fab15h6.v4 light chain
homo sapiens
homo sapiens
A
protein
serine protease htra1
homo sapiens
31
16
0.84
HL
train
7sjn_D_E
7sjn
htra1:fab15h6.v4 complex
no
hydrolase/immune system
2021-10-18
2022-09-07
electron microscopy
3.4
N.A.
N.A.
36064790
10.1038/s41467-022-32760-9
0
auth_asym_id
VH:VL
IGHV1
IGKV1
D
E
EVQLVQSGAEVKKPGASVKVSCKASGYKFTDSEMHWVRQAPGQGLEWIGGVDPETEGAAYNQKFKGRATITRDTSTSTAYLELSSLRSEDTAVYYCTRGYDYDYALDYWGQGTLVTV
DIQMTQSPSSLSASVGDRVTITCRASSSVEFIHWYQQKPGKAPKPLISATSNLASGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQWSSAPWTFGQGTKVEIK
EVQLVQSGAEVKKPGASVKVSCKASGYKFTDSEMHWVRQAPGQGLEWIGGVDPETEGAAYNQKFKGRATITRDTSTSTAYLELSSLRSEDTAVYYCTRGYDYDYALDYWGQGTLVTV
DIQMTQSPSSLSASVGDRVTITCRASSSVEFIHWYQQKPGKAPKPLISATSNLASGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQWSSAPWTFGQGTKVEIK
14.058911
13.090174
117
106
117
106
117
106
40
fab15h6.v4 heavy chain
fab15h6.v4 light chain
homo sapiens
homo sapiens
B
protein
serine protease htra1
homo sapiens
31
17
0.85
HL
train
7sjn_F_G
7sjn
htra1:fab15h6.v4 complex
no
hydrolase/immune system
2021-10-18
2022-09-07
electron microscopy
3.4
N.A.
N.A.
36064790
10.1038/s41467-022-32760-9
0
auth_asym_id
VH:VL
IGHV1
IGKV1
F
G
EVQLVQSGAEVKKPGASVKVSCKASGYKFTDSEMHWVRQAPGQGLEWIGGVDPETEGAAYNQKFKGRATITRDTSTSTAYLELSSLRSEDTAVYYCTRGYDYDYALDYWGQGTLVTV
DIQMTQSPSSLSASVGDRVTITCRASSSVEFIHWYQQKPGKAPKPLISATSNLASGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQWSSAPWTFGQGTKVEIK
EVQLVQSGAEVKKPGASVKVSCKASGYKFTDSEMHWVRQAPGQGLEWIGGVDPETEGAAYNQKFKGRATITRDTSTSTAYLELSSLRSEDTAVYYCTRGYDYDYALDYWGQGTLVTV
DIQMTQSPSSLSASVGDRVTITCRASSSVEFIHWYQQKPGKAPKPLISATSNLASGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQWSSAPWTFGQGTKVEIK
13.945709
13.117358
117
106
117
106
117
106
40
fab15h6.v4 heavy chain
fab15h6.v4 light chain
homo sapiens
homo sapiens
C
protein
serine protease htra1
homo sapiens
27
13
0.87
HL
train
7sjo_H_L
7sjo
htra1s328a:fab15h6.v4 complex
yes
hydrolase/immune system
2021-10-18
2022-09-07
electron microscopy
3.3
N.A.
N.A.
36064790
10.1038/s41467-022-32760-9
0
auth_asym_id
FabH:FabL
IGHV1
IGKV1
H
L
MKKNIAFLLASMFVFSIATNAYAEVQLVQSGAEVKKPGASVKVSCKASGYKFTDSEMHWVRQAPGQGLEWIGGVDPETEGAAYNQKFKGRATITRDTSTSTAYLELSSLRSEDTAVYYCTRGYDYDYALDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHT
MKKNIAFLLASMFVFSIATNAYADIQMTQSPSSLSASVGDRVTITCRASSSVEFIHWYQQKPGKAPKPLISATSNLASGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQWSSAPWTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
EVQLVQSGAEVKKPGASVKVSCKASGYKFTDSEMHWVRQAPGQGLEWIGGVDPETEGAAYNQKFKGRATITRDTSTSTAYLELSSLRSEDTAVYYCTRGYDYDYALDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKS
DIQMTQSPSSLSASVGDRVTITCRASSSVEFIHWYQQKPGKAPKPLISATSNLASGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQWSSAPWTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE
23.073936
23.224325
250
236
221
212
221
212
90
fab15h6.v4 heavy chain
fab15h6.v4 light chain
homo sapiens
homo sapiens
A
protein
serine protease htra1
homo sapiens
32
15
0.79
HL
train
7sjo_I_J
7sjo
htra1s328a:fab15h6.v4 complex
yes
hydrolase/immune system
2021-10-18
2022-09-07
electron microscopy
3.3
N.A.
N.A.
36064790
10.1038/s41467-022-32760-9
0
auth_asym_id
FabH:FabL
IGHV1
IGKV1
I
J
MKKNIAFLLASMFVFSIATNAYAEVQLVQSGAEVKKPGASVKVSCKASGYKFTDSEMHWVRQAPGQGLEWIGGVDPETEGAAYNQKFKGRATITRDTSTSTAYLELSSLRSEDTAVYYCTRGYDYDYALDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHT
MKKNIAFLLASMFVFSIATNAYADIQMTQSPSSLSASVGDRVTITCRASSSVEFIHWYQQKPGKAPKPLISATSNLASGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQWSSAPWTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
EVQLVQSGAEVKKPGASVKVSCKASGYKFTDSEMHWVRQAPGQGLEWIGGVDPETEGAAYNQKFKGRATITRDTSTSTAYLELSSLRSEDTAVYYCTRGYDYDYALDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKS
DIQMTQSPSSLSASVGDRVTITCRASSSVEFIHWYQQKPGKAPKPLISATSNLASGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQWSSAPWTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE
23.101547
23.184843
250
236
221
212
221
212
94
fab15h6.v4 heavy chain
fab15h6.v4 light chain
homo sapiens
homo sapiens
B
protein
serine protease htra1
homo sapiens
30
16
0.84
HL
train
7sjo_E_F
7sjo
htra1s328a:fab15h6.v4 complex
yes
hydrolase/immune system
2021-10-18
2022-09-07
electron microscopy
3.3
N.A.
N.A.
36064790
10.1038/s41467-022-32760-9
0
auth_asym_id
FabH:FabL
IGHV1
IGKV1
E
F
MKKNIAFLLASMFVFSIATNAYAEVQLVQSGAEVKKPGASVKVSCKASGYKFTDSEMHWVRQAPGQGLEWIGGVDPETEGAAYNQKFKGRATITRDTSTSTAYLELSSLRSEDTAVYYCTRGYDYDYALDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHT
MKKNIAFLLASMFVFSIATNAYADIQMTQSPSSLSASVGDRVTITCRASSSVEFIHWYQQKPGKAPKPLISATSNLASGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQWSSAPWTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
EVQLVQSGAEVKKPGASVKVSCKASGYKFTDSEMHWVRQAPGQGLEWIGGVDPETEGAAYNQKFKGRATITRDTSTSTAYLELSSLRSEDTAVYYCTRGYDYDYALDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKS
DIQMTQSPSSLSASVGDRVTITCRASSSVEFIHWYQQKPGKAPKPLISATSNLASGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQWSSAPWTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE
23.144999
23.12179
250
236
221
212
221
212
89
fab15h6.v4 heavy chain
fab15h6.v4 light chain
homo sapiens
homo sapiens
C
protein
serine protease htra1
homo sapiens
30
15
0.83
HL
train
7sk3_F_E
7sk3
cryo-em structure of ackr3 in complex with cxcl12, an intracellular fab, and an extracellular fab
no
signaling protein/immune system
2021-10-19
2022-07-27
electron microscopy
3.8
N.A.
N.A.
35857509
10.1126/sciadv.abn8063
0
auth_asym_id
VH:VL
IGHV3
IGKV1
F
E
EISEVQLVESGGGLVQPGGSLRLSCAASGFNISSSSIHWVRQAPGKGLEWVASISPSYGYTSYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARVSYWDWTWGWSKYEGMDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHT
SDIQMTQSPSSLSASVGDRVTITCRASQSVSSAVAWYQQKPGKAPKLLIYSASSLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQSYYYPITFGQGTKVEIKRTVAAPSVFIFPPSDSQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
VQLVESGGGLVQPGGSLRLSCAASGFNISSSSIHWVRQAPGKGLEWVASISPSYGYTSYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARVSYWDWTWGWSKYEGMDYWGQGTLVTVS
IQMTQSPSSLSASVGDRVTITCRASQSVSSAVAWYQQKPGKAPKLLIYSASSLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQSYYYPITFGQGTKVEIK
15.321224
13.346844
238
215
125
106
125
106
49
cid24 fab heavy chain
cid24 fab light chain
homo sapiens
homo sapiens
A
protein
atypical chemokine receptor 3
homo sapiens
79
30
0.83
HL
train
7sk3_D_C
7sk3
cryo-em structure of ackr3 in complex with cxcl12, an intracellular fab, and an extracellular fab
no
signaling protein/immune system
2021-10-19
2022-07-27
electron microscopy
3.8
N.A.
N.A.
35857509
10.1126/sciadv.abn8063
0
auth_asym_id
VH:VL
IGHV3
IGKV1
D
C
EISEVQLVESGGGLVQPGGSLRLSCAASGFNFSYSSIHWVRQAPGKGLEWVAYIYSSYGYTSYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARVYPWWYYKYYHGALDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHT
SDIQMTQSPSSLSASVGDRVTITCRASQSVSSAVAWYQQKPGKAPKLLIYSASSLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQYYYPLFTFGQGTKVEIKRTVAAPSVFIFPPSDSQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
VQLVESGGGLVQPGGSLRLSCAASGFNFSYSSIHWVRQAPGKGLEWVAYIYSSYGYTSYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARVYPWWYYKYYHGALDYWGQGTLVTVS
IQMTQSPSSLSASVGDRVTITCRASQSVSSAVAWYQQKPGKAPKLLIYSASSLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQYYYPLFTFGQGTKVEI
14.700032
13.28501
236
215
123
105
123
105
47
cid25 fab heavy chain
cid25 fab light chain
homo sapiens
homo sapiens
A;B
protein;protein
atypical chemokine receptor 3;stromal cell-derived factor 1
homo sapiens;homo sapiens
36;48
14;19
0.88;0.83
HL
train
7sk4_F_E
7sk4
cryo-em structure of ackr3 in complex with chemokine n-terminal mutant cxcl12_lrhq, an intracellular fab, and an extracellular fab
yes
signaling protein/immune system
2021-10-19
2022-07-27
electron microscopy
3.3
N.A.
N.A.
35857509
10.1126/sciadv.abn8063
0
auth_asym_id
VH:VL
IGHV3
IGKV1
F
E
EISEVQLVESGGGLVQPGGSLRLSCAASGFNISSSSIHWVRQAPGKGLEWVASISPSYGYTSYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARVSYWDWTWGWSKYEGMDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHT
SDIQMTQSPSSLSASVGDRVTITCRASQSVSSAVAWYQQKPGKAPKLLIYSASSLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQSYYYPITFGQGTKVEIKRTVAAPSVFIFPPSDSQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
VQLVESGGGLVQPGGSLRLSCAASGFNISSSSIHWVRQAPGKGLEWVASISPSYGYTSYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARVSYWDWTWGWSKYEGMDYWGQGTLVTVS
DIQMTQSPSSLSASVGDRVTITCRASQSVSSAVAWYQQKPGKAPKLLIYSASSLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQSYYYPITFGQGTKVE
15.262367
12.802029
238
215
125
101
125
105
46
cid24 fab heavy chain
cid24 fab light chain
homo sapiens
homo sapiens
A
protein
atypical chemokine receptor 3
homo sapiens
81
30
0.79
HL
train
7sk4_D_C
7sk4
cryo-em structure of ackr3 in complex with chemokine n-terminal mutant cxcl12_lrhq, an intracellular fab, and an extracellular fab
yes
signaling protein/immune system
2021-10-19
2022-07-27
electron microscopy
3.3
N.A.
N.A.
35857509
10.1126/sciadv.abn8063
0
auth_asym_id
VH:VL
IGHV3
IGKV1
D
C
EISEVQLVESGGGLVQPGGSLRLSCAASGFNFSYSSIHWVRQAPGKGLEWVAYIYSSYGYTSYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARVYPWWYYKYYHGALDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHT
SDIQMTQSPSSLSASVGDRVTITCRASQSVSSAVAWYQQKPGKAPKLLIYSASSLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQYYYPLFTFGQGTKVEIKRTVAAPSVFIFPPSDSQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
EVQLVESGGGLVQPGGSLRLSCAASGFNFSYSSIHWVRQAPGKGLEWVAYIYSSYGYTSYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARVYPWWYYKYYHGALDYWGQGTLVTVSS
IQMTQSPSSLSASVGDRVTITCRASQSVSSAVAWYQQKPGKAPKLLIYSASSLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQYYYPLFTFGQGTKVEIK
14.803484
13.246919
236
215
125
106
125
106
50
cid25 fab heavy chain
cid25 fab light chain
homo sapiens
homo sapiens
A;B
protein;protein
atypical chemokine receptor 3;stromal cell-derived factor 1
homo sapiens;homo sapiens
32;49
14;19
0.88;0.79
HL
train
7sk5_F_E
7sk5
cryo-em structure of ackr3 in complex with cxcl12 and an intracellular fab
no
signaling protein/immune system
2021-10-19
2022-07-27
electron microscopy
4
N.A.
N.A.
35857509
10.1126/sciadv.abn8063
0
auth_asym_id
FabH:FabL
IGHV3
IGKV1
F
E
EISEVQLVESGGGLVQPGGSLRLSCAASGFNISSSSIHWVRQAPGKGLEWVASISPSYGYTSYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARVSYWDWTWGWSKYEGMDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHT
SDIQMTQSPSSLSASVGDRVTITCRASQSVSSAVAWYQQKPGKAPKLLIYSASSLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQSYYYPITFGQGTKVEIKRTVAAPSVFIFPPSDSQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
EVQLVESGGGLVQPGGSLRLSCAASGFNISSSSIHWVRQAPGKGLEWVASISPSYGYTSYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARVSYWDWTWGWSKYEGMDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEP
DIQMTQSPSSLSASVGDRVTITCRASQSVSSAVAWYQQKPGKAPKLLIYSASSLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQSYYYPITFGQGTKVEIKRTVAAPSVFIFPPSDSQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNR
23.926302
22.947796
238
215
220
211
227
211
95
cid24 fab heavy chain
cid24 fab light chain
homo sapiens
homo sapiens
A
protein
atypical chemokine receptor 3
homo sapiens
78
30
0.83
HL
train
7sk5_K
7sk5
cryo-em structure of ackr3 in complex with cxcl12 and an intracellular fab
no
signaling protein/immune system
2021-10-19
2022-07-27
electron microscopy
4
N.A.
N.A.
35857509
10.1126/sciadv.abn8063
0
auth_asym_id
VHH
IGHV3
N.A.
K
N.A.
GSQVQLQESGGGLVQPGGSLRLSCAASGRTISRYAMSWFRQAPGKEREFVAVARRSGDGAFYADSVQGRFTVSRDDAKNTVYLQMNSLKPEDTAVYYCAIDSDTFYSGSYDYWGQGTQVTVSS
N.A.
QESGGGLVQPGGSLRLSCAASGRTISRYAMSWFRQAPGKEREFVAVARRSGDGAFYADSVQGRFTVSRDDAKNTVYLQMNSLKPEDTAVYYCAIDSDTFYSGSYDYWGQGTQVTV
N.A.
13.328737
0
123
0
103
0
115
0
0
anti-fab nanobody
N.A.
lama glama
N.A.
N.A.
N.A.
N.A.
N.A.
0
0
0
H_only
train
7sk6_F_E
7sk6
cryo-em structure of human ackr3 in complex with chemokine n-terminal mutant cxcl12_lrhq and an intracellular fab
yes
signaling protein
2021-10-19
2022-07-27
electron microscopy
4
N.A.
N.A.
35857509
10.1126/sciadv.abn8063
0
auth_asym_id
VH:VL
IGHV3
IGKV1
F
E
EISEVQLVESGGGLVQPGGSLRLSCAASGFNISSSSIHWVRQAPGKGLEWVASISPSYGYTSYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARVSYWDWTWGWSKYEGMDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHT
SDIQMTQSPSSLSASVGDRVTITCRASQSVSSAVAWYQQKPGKAPKLLIYSASSLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQSYYYPITFGQGTKVEIKRTVAAPSVFIFPPSDSQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
VQLVESGGGLVQPGGSLRLSCAASGFNISSSSIHWVRQAPGKGLEWVASISPSYGYTSYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARVSYWDWTWGWSKYEGMDYWGQGTLVTVS
DIQMTQSPSSLSASVGDRVTITCRASQSVSSAVAWYQQKPGKAPKLLIYSASSLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQSYYYPITFGQGTKVE
15.058846
12.638281
238
215
125
101
125
105
47
cid24 fab heavy chain
cid24 fab light chain
homo sapiens
homo sapiens
A
protein
atypical chemokine receptor 3
homo sapiens
80
29
0.78
HL
train
7sk9_F_E
7sk9
cryo-em structure of human ackr3 in complex with a small molecule partial agonist ccx662, and an intracellular fab
no
signaling protein/immune system
2021-10-19
2022-07-27
electron microscopy
3.7
N.A.
N.A.
35857509
10.1126/sciadv.abn8063
0
auth_asym_id
FabH:FabL
IGHV3
IGKV1
F
E
EISEVQLVESGGGLVQPGGSLRLSCAASGFNISSSSIHWVRQAPGKGLEWVASISPSYGYTSYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARVSYWDWTWGWSKYEGMDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHT
SDIQMTQSPSSLSASVGDRVTITCRASQSVSSAVAWYQQKPGKAPKLLIYSASSLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQSYYYPITFGQGTKVEIKRTVAAPSVFIFPPSDSQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
VQLVESGGGLVQPGGSLRLSCAASGFNISSSSIHWVRQAPGKGLEWVASISPSYGYTSYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARVSYWDWTWGWSKYEGMDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEP
DIQMTQSPSSLSASVGDRVTITCRASQSVSSAVAWYQQKPGKAPKLLIYSASSLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQSYYYPITFGQGTKVEIKRTVAAPSVFIFPPSDSQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRG
24.077908
22.92303
238
215
222
212
226
212
94
cid24 fab heavy chain
cid24 fab light chain
homo sapiens
homo sapiens
A
protein
atypical chemokine receptor 3
homo sapiens
80
30
0.81
HL
train
7vqx_N
7vqx
cryo-em structure of human vasoactive intestinal polypeptide receptor 2 (vip2r) in complex with pacap27 and gs
yes
structural protein
2021-10-21
2022-05-18
electron microscopy
2.74
N.A.
N.A.
35477937
10.1038/s41467-022-30041-z
0
auth_asym_id
VHH
IGHV3
N.A.
N
N.A.
MAQVQLQESGGGLVQPGGSLRLSCAASGFTFSNYKMNWVRQAPGKGLEWVSDISQSGASISYTGSVKGRFTISRDNAKNTLYLQMNSLKPEDTAVYYCARCPAPFTRDCFDVTSTTYAYRGQGTQVTVSSHHHHHHEPEA
N.A.
QVQLQESGGGLVQPGGSLRLSCAASGFTFSNYKMNWVRQAPGKGLEWVSDISQSGASISYTGSVKGRFTISRDNAKNTLYLQMNSLKPEDTAVYYCARCPAPFTRDCFDVTSTTYAYRGQGTQVTVSS
N.A.
13.807775
0
140
0
128
0
128
0
0
nanobody-35
N.A.
synthetic construct
N.A.
A;B
protein;protein
guanine nucleotide-binding protein g(s) subunit alpha isoforms short;guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1
bos taurus;rattus norvegicus
45;32
13;11
0.62;0.69
H_only
train
7q1u_B
7q1u
structure of hedgehog acyltransferase (hhat) in complex with megabody 177 bound to non-hydrolysable palmitoyl-coa (composite map)
yes
membrane protein
2021-10-21
2022-06-08
electron microscopy
2.7
N.A.
N.A.
34890564
10.1016/j.molcel.2021.11.018
0
auth_asym_id
VH+
IGHV3
N.A.
B
N.A.
MKYLLPTAAAGLLLLAAQPAMAQVQLVESGGGLVKEETQSGLNNYARVVEKGQYDSLEIPAQVAASWESGRDDAAVFGFIDKEQLDKYVANGGKRSDWTVKFAENRSQDGTLLGYSLLQESVDQASYMYSDNHYLAEMATILGKPEEAKRYRQLAQQLADYINTCMFDPTTQFYYDVRIEDKPLANGCAGKPIVERGKGPEGWSPLFNGAATQANADAVVKVMLDPKEFNTFVPLGTAALTNPAFGADIYWRGRVWVDQFWFGLKGMERYGYRDDALKLADTFFRHAKGLTADGPIQENYNPLTGAQQGAPNFSWSAAHL...
N.A.
QVQLVESGGGLVKEETQSGLNNYARVVEKGQYDSLEIPAQVAASWESGRDDAAVFGFIDKEQLDKYVANGGKRSDWTVKFAENRSQDGTLLGYSLLQESVDQASYMYSDNHYLAEMATILGKPEEAKRYRQLAQQLADYINTCMFDPTTQFYYDVRIEDKPLANGCAGKPIVERGKGPEGWSPLFNGAATQANADAVVKVMLDPKEFNTFVPLGTAALTNPAFGADIYWRGRVWVDQFWFGLKGMERYGYRDDALKLADTFFRHAKGLTADGPIQENYNPLTGAQQGAPNFSWSAAHLYMLYNDFFRKQASGGGSGGGGS...
N.A.
29.93807
0
919
0
872
0
890
0
0
megabody 177
N.A.
escherichia coli k-12
N.A.
A
protein
protein-cysteine n-palmitoyltransferase hhat
homo sapiens
58
18
0.82
H_only
train
7skz_H_L
7skz
crystal structure of vn01h1 fab in complex with sars-cov-2 s fusion peptide
no
viral protein/immune system
2021-10-22
2022-07-20
x-ray diffraction
1.86
0.234
0.199
35857703
10.1126/science.abq2679
0
auth_asym_id
FabH:FabL
IGHV3
IGKV3
H
L
EVQLVESGGGLVLPGGSLRLSCSASGFTFSDFSMHWVRQSPGKGLEYVSAITSSGSSTYYPDSVKGRFTISRDNSKNTLYLQMGSLRVEDTAVYWCVKNSDVFRFPHLYFDVWGRGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSC
DIVMTQSPATLSVSPGDRATLSCRASQSVSSNLAWYQQKPGQAPRLLIYGASTRAAGIPARFSGSGSGTEFTLTISSLQSEDFAVYYCQQYDNWPSITFGQGTRLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
EVQLVESGGGLVLPGGSLRLSCSASGFTFSDFSMHWVRQSPGKGLEYVSAITSSGSSTYYPDSVKGRFTISRDNSKNTLYLQMGSLRVEDTAVYWCVKNSDVFRFPHLYFDVWGRGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSC
DIVMTQSPATLSVSPGDRATLSCRASQSVSSNLAWYQQKPGQAPRLLIYGASTRAAGIPARFSGSGSGTEFTLTISSLQSEDFAVYYCQQYDNWPSITFGQGTRLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
21.101862
23.336372
226
215
226
215
226
215
108
heavy chain of vn01h1 fab
light chain of vn01h1 fab
homo sapiens
homo sapiens
A
peptide
pro-ser-lys-arg-ser-phe-ile-glu-asp-leu-leu-phe-asn
severe acute respiratory syndrome coronavirus 2
29
17
0.89
HL
train
7sl9_B
7sl9
cryoem structure of smct1
no
membrane protein
2021-10-23
2021-12-15
electron microscopy
3.5
N.A.
N.A.
34880492
10.1038/s41586-021-04211-w
0
auth_asym_id
VHH
IGHV3
N.A.
B
N.A.
MAQVQLQESGGGLVQAGGSLRLSCAASGNISTRAGMGWYRQAPGKEREFVASINWGAITNYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCAVEYKYGPQRSDTYYYWGQGTQVTVSSHHHHHH
N.A.
QVQLQESGGGLVQAGGSLRLSCAASGNISTRAGMGWYRQAPGKEREFVASINWGAITNYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCAVEYKYGPQRSDTYYYWGQGTQVTVSS
N.A.
14.48816
0
130
0
122
0
122
0
0
nanobody nb2
N.A.
synthetic construct
N.A.
A
protein
sodium-coupled monocarboxylate transporter 1
homo sapiens
46
20
0.95
H_only
train
7sla_B
7sla
cryoem structure of sglt1 at 3.15 angstrom resolution
no
membrane protein
2021-10-23
2021-12-15
electron microscopy
3.15
N.A.
N.A.
34880492
10.1038/s41586-021-04211-w
0
auth_asym_id
VHH
IGHV3
N.A.
B
N.A.
MAQVQLQESGGGLVQAGGSLRLSCAASGTIFVFDKMGWYRQAPGKEREFVATISRGGSTNYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCAVRYTPWRRYSYWGQGTQVTVSSHHHHHH
N.A.
QVQLQESGGGLVQAGGSLRLSCAASGTIFVFDKMGWYRQAPGKEREFVATISRGGSTNYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCAVRYTPWRRYSYWGQGTQVTVS
N.A.
14.253667
0
126
0
117
0
117
0
0
nanobody nb1
N.A.
synthetic construct
N.A.
A
protein
sodium/glucose cotransporter 1
homo sapiens
30
13
0.81
H_only
train
7sn3_D_E
7sn3
structure of human sars-cov-2 spike glycoprotein trimer bound by neutralizing antibody c1c-a3 fab (variable region)
yes
viral protein/immune system
2021-10-27
2021-12-08
electron microscopy
3.1
N.A.
N.A.
34855508
10.1126/science.abl6251
0
auth_asym_id
VH:VL
IGHV3
IGKV3
D
E
MKRGLCCVLLLCGAVFVSPSASQVQLVESGGGVVQPGRSLRLSCAASGFTFSSYGMHWVRQAPGKGLEWVAVIWYDGTNTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARDLAYRDYVWRYFDLWGRGTLVTVSGASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDR
MKRGLCCVLLLCGAVFVSPSASEIVLTQSPATLSLSPGERATLSCRASQSVSTYLAWYQQKFGQAPRLLIYDASNRATGIPARFSGSGSGTDFTLTISSLEPEDFAVYYCQCRSNWPPGITFGQGTRLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
QVQLVESGGGVVQPGRSLRLSCAASGFTFSSYGMHWVRQAPGKGLEWVAVIWYDGTNTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARDLAYRDYVWRYFDLWGRGTLVTV
EIVLTQSPATLSLSPGERATLSCRASQSVSTYLAWYQQKFGQAPRLLIYDASNRATGIPARFSGSGSGTDFTLTISSLEPEDFAVYYCQCRSNWPPGITFGQGTRLEI
13.930676
13.608615
250
238
121
108
121
108
27
neutralizing antibody c1c-a3 heavy chain variable region
neutralizing antibody c1c-a3 light chain variable region
homo sapiens
homo sapiens
A
protein
spike glycoprotein
severe acute respiratory syndrome coronavirus 2
40
18
0.86
HL
train
7sn3_F_G
7sn3
structure of human sars-cov-2 spike glycoprotein trimer bound by neutralizing antibody c1c-a3 fab (variable region)
yes
viral protein/immune system
2021-10-27
2021-12-08
electron microscopy
3.1
N.A.
N.A.
34855508
10.1126/science.abl6251
0
auth_asym_id
VH:VL
IGHV3
IGKV3
F
G
MKRGLCCVLLLCGAVFVSPSASQVQLVESGGGVVQPGRSLRLSCAASGFTFSSYGMHWVRQAPGKGLEWVAVIWYDGTNTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARDLAYRDYVWRYFDLWGRGTLVTVSGASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDR
MKRGLCCVLLLCGAVFVSPSASEIVLTQSPATLSLSPGERATLSCRASQSVSTYLAWYQQKFGQAPRLLIYDASNRATGIPARFSGSGSGTDFTLTISSLEPEDFAVYYCQCRSNWPPGITFGQGTRLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
QVQLVESGGGVVQPGRSLRLSCAASGFTFSSYGMHWVRQAPGKGLEWVAVIWYDGTNTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARDLAYRDYVWRYFDLWGRGTLVTV
EIVLTQSPATLSLSPGERATLSCRASQSVSTYLAWYQQKFGQAPRLLIYDASNRATGIPARFSGSGSGTDFTLTISSLEPEDFAVYYCQCRSNWPPGITFGQGTRLEI
13.867661
13.621789
250
238
121
108
121
108
29
neutralizing antibody c1c-a3 heavy chain variable region
neutralizing antibody c1c-a3 light chain variable region
homo sapiens
homo sapiens
B
protein
spike glycoprotein
severe acute respiratory syndrome coronavirus 2
37
16
0.89
HL
train
7sn3_H_L
7sn3
structure of human sars-cov-2 spike glycoprotein trimer bound by neutralizing antibody c1c-a3 fab (variable region)
yes
viral protein/immune system
2021-10-27
2021-12-08
electron microscopy
3.1
N.A.
N.A.
34855508
10.1126/science.abl6251
0
auth_asym_id
VH:VL
IGHV3
IGKV3
H
L
MKRGLCCVLLLCGAVFVSPSASQVQLVESGGGVVQPGRSLRLSCAASGFTFSSYGMHWVRQAPGKGLEWVAVIWYDGTNTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARDLAYRDYVWRYFDLWGRGTLVTVSGASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDR
MKRGLCCVLLLCGAVFVSPSASEIVLTQSPATLSLSPGERATLSCRASQSVSTYLAWYQQKFGQAPRLLIYDASNRATGIPARFSGSGSGTDFTLTISSLEPEDFAVYYCQCRSNWPPGITFGQGTRLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
QVQLVESGGGVVQPGRSLRLSCAASGFTFSSYGMHWVRQAPGKGLEWVAVIWYDGTNTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARDLAYRDYVWRYFDLWGRGTLVTV
EIVLTQSPATLSLSPGERATLSCRASQSVSTYLAWYQQKFGQAPRLLIYDASNRATGIPARFSGSGSGTDFTLTISSLEPEDFAVYYCQCRSNWPPGITFGQGTRLEI
13.793062
13.729668
250
238
121
108
121
108
33
neutralizing antibody c1c-a3 heavy chain variable region
neutralizing antibody c1c-a3 light chain variable region
homo sapiens
homo sapiens
C
protein
spike glycoprotein
severe acute respiratory syndrome coronavirus 2
35
16
0.94
HL
train
7q3q_B
7q3q
crystal structure of sars-cov-2 rbd in complex with the neutralizing nanobody vhh-12
no
viral protein
2021-10-28
2022-11-16
x-ray diffraction
2.3
0.22
0.185
N.A.
N.A.
0
auth_asym_id
VHH
IGHV3
N.A.
B
N.A.
AMAEVQLQASGGGLVEAGGSLRLSCTTSGLTFSSVTMGWFRQAPGKEREFVAAIRWKFGNLGYADSVKGRFTVSRDNAKNTVYLQMNSLKPEDTAVYYCAAARVGEIIAVLISPSNYAYWGQGTQVTVSSAAAHHHHHHHH
N.A.
EVQLQASGGGLVEAGGSLRLSCTTSGLTFSSVTMGWFRQAPGKEREFVAAIRWKFGNLGYADSVKGRFTVSRDNAKNTVYLQMNSLKPEDTAVYYCAAARVGEIIAVLISPSNYAYWGQGTQVTVSS
N.A.
13.797093
0
141
0
127
0
127
0
0
vhh-12
N.A.
vicugna pacos
N.A.
A
protein
spike glycoprotein
severe acute respiratory syndrome coronavirus 2
41
14
0.67
H_only
train
7q3r_F
7q3r
crystal structure of sars-cov-2 rbd in complex with the neutralizing nanobodies vhh-f04 and vhh-g09
no
viral protein
2021-10-28
2022-11-16
x-ray diffraction
1.92
0.209
0.182
N.A.
N.A.
0
auth_asym_id
VHH
IGHV3
N.A.
F
N.A.
AMAEVQLVESGGGLVQAGGSLRLSCAASGRAFSRYFMGWFRQAPGKEREFVAGISRSGGSTDYANFVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCAATVDYSGTLTAARGREDYDDWGQGIQVTVSSAAAHHHHHHHH
N.A.
VQLVESGGGLVQAGGSLRLSCAASGRAFSRYFMGWFRQAPGKEREFVAGISRSGGSTDYANFVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCAATVDYSGTLTAARGREDYDDWGQGIQVTVSS
N.A.
13.725899
0
142
0
127
0
127
0
0
vhh-f04
N.A.
vicugna pacos
N.A.
A
protein
spike glycoprotein
severe acute respiratory syndrome coronavirus 2
41
14
0.78
H_only
train
7q3r_G
7q3r
crystal structure of sars-cov-2 rbd in complex with the neutralizing nanobodies vhh-f04 and vhh-g09
no
viral protein
2021-10-28
2022-11-16
x-ray diffraction
1.92
0.209
0.182
N.A.
N.A.
0
auth_asym_id
VHH
IGHV3
N.A.
G
N.A.
AMAEVQLVESGGGTVQPGGSLRLSCEVSGTGFTINAMGWDRQAPGKQRELVATITRGDRIHYADSVKGRFAISRDKDKNTVYLEMNNLKPEDTAVYYCDVAAFDSSDYEVLDSWGQGTQVTVSSAAAHHHHHHHH
N.A.
EVQLVESGGGTVQPGGSLRLSCEVSGTGFTINAMGWDRQAPGKQRELVATITRGDRIHYADSVKGRFAISRDKDKNTVYLEMNNLKPEDTAVYYCDVAAFDSSDYEVLDSWGQGTQVTVSS
N.A.
14.491899
0
135
0
121
0
121
0
0
vhh-g09
N.A.
vicugna pacos
N.A.
A
protein
spike glycoprotein
severe acute respiratory syndrome coronavirus 2
53
12
0.5
H_only
train
7soc_H_L
7soc
sars-cov-2 s rbd b.1.617.1 kappa variant s309 local refinement
yes
viral protein/immune system
2021-10-29
2021-11-17
electron microscopy
3.3
N.A.
N.A.
34751595
10.1126/science.abl8506
0
auth_asym_id
VH:VL
IGHV1
IGKV3
H
L
QVQLVQSGAEVKKPGASVKVSCKASGYPFTSYGISWVRQAPGQGLEWMGWISTYNGNTNYAQKFQGRVTMTTDTSTTTGYMELRRLRSDDTAVYYCARDYTRGAWFGESLIGGFDNWGQGTLVTVSSAS
IVLTQSPGTLSLSPGERATLSCRASQTVSSTSLAWYQQKPGQAPRLLIYGASSRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQHDTSLTFGGGTKVE
QVQLVQSGAEVKKPGASVKVSCKASGYPFTSYGISWVRQAPGQGLEWMGWISTYNGNTNYAQKFQGRVTMTTDTSTTTGYMELRRLRSDDTAVYYCARDYTRGAWFGESLIGGFDNWGQGTLVTVSSAS
IVLTQSPGTLSLSPGERATLSCRASQTVSSTSLAWYQQKPGQAPRLLIYGASSRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQHDTSLTFGGGTKVE
14.394759
12.759907
129
104
129
104
129
104
39
s309 fab heavy chain
s309 fab light chain
homo sapiens
homo sapiens
A
protein
spike glycoprotein
severe acute respiratory syndrome coronavirus 2
38
16
0.89
HL
train
7sod_H_L
7sod
sars-cov-2 s ntd b.1.617.1 kappa variant s2l20 local refinement
yes
viral protein/immune system
2021-10-29
2021-11-17
electron microscopy
3.2
N.A.
N.A.
34751595
10.1126/science.abl8506
0
auth_asym_id
VH:VL
IGHV3
IGKV1
H
L
EVQLVESGGGVVQPGGSLRLSCAASGFTFNSYGMHWVRQAPGKGLEWVAFIRYDGGNKYYADSVKGRFTISRDNSKNTLYLQMKSLRAEDTAVYYCANLKDSRYSGSYYDYWGQGTLVTVS
VIWMTQSPSSLSASVGDRVTITCQASQDIRFYLNWYQQKPGKAPKLLISDASNMETGVPSRFSGSGSGTDFTFTISSLQPEDIATYYCQQYDNLPFTFGPGTKVDFK
EVQLVESGGGVVQPGGSLRLSCAASGFTFNSYGMHWVRQAPGKGLEWVAFIRYDGGNKYYADSVKGRFTISRDNSKNTLYLQMKSLRAEDTAVYYCANLKDSRYSGSYYDYWGQGTLVTVS
VIWMTQSPSSLSASVGDRVTITCQASQDIRFYLNWYQQKPGKAPKLLISDASNMETGVPSRFSGSGSGTDFTFTISSLQPEDIATYYCQQYDNLPFTFGPGTKVDFK
13.829655
13.309452
121
107
121
107
121
107
49
s2l20 fab heavy chain
s2l20 fab light chain
homo sapiens
homo sapiens
A
protein
spike glycoprotein
severe acute respiratory syndrome coronavirus 2
49
20
0.77
HL
train
7soe_B_L
7soe
sars-cov-2 s b.1.617.1 kappa variant + s2x303 global refinement
yes
viral protein/immune system
2021-10-29
2021-11-17
electron microscopy
2.8
N.A.
N.A.
34751595
10.1126/science.abl8506
0
auth_asym_id
VH:VL
IGHV2
IGLV3
B
L
QITLKESGPTLVKPTQTLTLTCKLSGFSVNTGGVGVGWIRQPPGKALEWLALIYWNDDKLYSPSLKSRLTVTKDTSKNQVVLTMTNMDPVDTATYYCAHVLVWFGEVLPDAFDVWGQGTMVTVSS
SYELTQPPSVSVSPGQTASITCSGDKLGETYASWYQQKPGQSPILVIYQDNKRPSGIPERFSGSNSENTATLTISGTQTMDEADYYCQAWDKTIAGFGGGTKLTV
QITLKESGPTLVKPTQTLTLTCKLSGFSVNTGGVGVGWIRQPPGKALEWLALIYWNDDKLYSPSLKSRLTVTKDTSKNQVVLTMTNMDPVDTATYYCAHVLVWFGEVLPDAFDVWGQGTMVTVSS
SYELTQPPSVSVSPGQTASITCSGDKLGETYASWYQQKPGQSPILVIYQDNKRPSGIPERFSGSNSENTATLTISGTQTMDEADYYCQAWDKTIAGFGGGTKLTV
14.21078
13.094268
125
105
125
105
125
105
45
s2x303 fab heavy chain
s2x303 fab light chain
homo sapiens
homo sapiens
A
protein
spike glycoprotein
severe acute respiratory syndrome coronavirus 2
26
15
1
HL
train
7soe_E_D
7soe
sars-cov-2 s b.1.617.1 kappa variant + s2x303 global refinement
yes
viral protein/immune system
2021-10-29
2021-11-17
electron microscopy
2.8
N.A.
N.A.
34751595
10.1126/science.abl8506
0
auth_asym_id
VH:VL
IGHV2
IGLV3
E
D
QITLKESGPTLVKPTQTLTLTCKLSGFSVNTGGVGVGWIRQPPGKALEWLALIYWNDDKLYSPSLKSRLTVTKDTSKNQVVLTMTNMDPVDTATYYCAHVLVWFGEVLPDAFDVWGQGTMVTVSS
SYELTQPPSVSVSPGQTASITCSGDKLGETYASWYQQKPGQSPILVIYQDNKRPSGIPERFSGSNSENTATLTISGTQTMDEADYYCQAWDKTIAGFGGGTKLTV
QITLKESGPTLVKPTQTLTLTCKLSGFSVNTGGVGVGWIRQPPGKALEWLALIYWNDDKLYSPSLKSRLTVTKDTSKNQVVLTMTNMDPVDTATYYCAHVLVWFGEVLPDAFDVWGQGTMVTVSS
SYELTQPPSVSVSPGQTASITCSGDKLGETYASWYQQKPGQSPILVIYQDNKRPSGIPERFSGSNSENTATLTISGTQTMDEADYYCQAWDKTIAGFGGGTKLTV
14.210813
13.094255
125
105
125
105
125
105
45
s2x303 fab heavy chain
s2x303 fab light chain
homo sapiens
homo sapiens
C
protein
spike glycoprotein
severe acute respiratory syndrome coronavirus 2
26
15
1
HL
train
7soe_H_G
7soe
sars-cov-2 s b.1.617.1 kappa variant + s2x303 global refinement
yes
viral protein/immune system
2021-10-29
2021-11-17
electron microscopy
2.8
N.A.
N.A.
34751595
10.1126/science.abl8506
0
auth_asym_id
VH:VL
IGHV2
IGLV3
H
G
QITLKESGPTLVKPTQTLTLTCKLSGFSVNTGGVGVGWIRQPPGKALEWLALIYWNDDKLYSPSLKSRLTVTKDTSKNQVVLTMTNMDPVDTATYYCAHVLVWFGEVLPDAFDVWGQGTMVTVSS
SYELTQPPSVSVSPGQTASITCSGDKLGETYASWYQQKPGQSPILVIYQDNKRPSGIPERFSGSNSENTATLTISGTQTMDEADYYCQAWDKTIAGFGGGTKLTV
QITLKESGPTLVKPTQTLTLTCKLSGFSVNTGGVGVGWIRQPPGKALEWLALIYWNDDKLYSPSLKSRLTVTKDTSKNQVVLTMTNMDPVDTATYYCAHVLVWFGEVLPDAFDVWGQGTMVTVSS
SYELTQPPSVSVSPGQTASITCSGDKLGETYASWYQQKPGQSPILVIYQDNKRPSGIPERFSGSNSENTATLTISGTQTMDEADYYCQAWDKTIAGFGGGTKLTV
14.210769
13.090647
125
105
125
105
125
105
45
s2x303 fab heavy chain
s2x303 fab light chain
homo sapiens
homo sapiens
F
protein
spike glycoprotein
severe acute respiratory syndrome coronavirus 2
26
15
1
HL
train
7sof_H_L
7sof
sars-cov-2 s ntd b.1.617.1 kappa variant s2x303 local refinement
yes
viral protein/immune system
2021-10-29
2021-11-17
electron microscopy
3.6
N.A.
N.A.
34751595
10.1126/science.abl8506
0
auth_asym_id
VH:VL
IGHV2
IGLV3
H
L
QITLKESGPTLVKPTQTLTLTCKLSGFSVNTGGVGVGWIRQPPGKALEWLALIYWNDDKLYSPSLKSRLTVTKDTSKNQVVLTMTNMDPVDTATYYCAHVLVWFGEVLPDAFDVWGQGTMVTVSS
SYELTQPPSVSVSPGQTASITCSGDKLGETYASWYQQKPGQSPILVIYQDNKRPSGIPERFSGSNSENTATLTISGTQTMDEADYYCQAWDKTIAGFGGGTKLTV
QITLKESGPTLVKPTQTLTLTCKLSGFSVNTGGVGVGWIRQPPGKALEWLALIYWNDDKLYSPSLKSRLTVTKDTSKNQVVLTMTNMDPVDTATYYCAHVLVWFGEVLPDAFDVWGQGTMVTVSS
SYELTQPPSVSVSPGQTASITCSGDKLGETYASWYQQKPGQSPILVIYQDNKRPSGIPERFSGSNSENTATLTISGTQTMDEADYYCQAWDKTIAGFGGGTKLTV
14.190559
13.133485
125
105
125
105
125
105
45
s2x303 fab heavy chain
s2x303 fab light chain
homo sapiens
homo sapiens
A
protein
spike glycoprotein
severe acute respiratory syndrome coronavirus 2
27
16
1
HL
train
7so5_H_L
7so5
novel structural insights for a pair of monoclonal antibodies recognizing non-overlapping epitopes of the glucosyltransferase domain of clostridium difficile toxin b
no
toxin/immune system
2021-10-29
2022-05-11
x-ray diffraction
1.8
0.223
0.185
35469152
10.1016/j.crstbi.2022.03.003
0
auth_asym_id
FabH:FabL
IGHV4
IGKV2
H
L
QVQLLQGGAGLLKPSETLSLTCAVYGGSFSEHYWSWIRQPPGKGLEWIGEINYGGNTNYNPSLESRISISVDTSKNQVFLRVRFVTAADTAVYFCSGGRRAAVHGRTFAIWGQGTMVTVSSASTKGPSVFPLAPGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEP
DIVMTQSPLSLPVTPGEPASISCRSSQSLLHTNGNNYLVWYLQKPGQAPHLLIYLGSNRASGVPGRFSGSGSGTDFTLKISRVEVEDVGVYYCMQSLQTPPTFGQGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNR
QVQLLQGGAGLLKPSETLSLTCAVYGGSFSEHYWSWIRQPPGKGLEWIGEINYGGNTNYNPSLESRISISVDTSKNQVFLRVRFVTAADTAVYFCSGGRRAAVHGRTFAIWGQGTMVTVSSASTKGPSVFPLAPGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEP
DIVMTQSPLSLPVTPGEPASISCRSSQSLLHTNGNNYLVWYLQKPGQAPHLLIYLGSNRASGVPGRFSGSGSGTDFTLKISRVEVEDVGVYYCMQSLQTPPTFGQGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNR
20.763111
23.595045
215
216
215
216
215
216
94
fab b2 hc
fab b2 lc
homo sapiens
homo sapiens
A
protein
toxin b
clostridioides difficile r20291
42
21
0.91
HL
train
7vtj_H_L
7vtj
the cross-reaction complex structure with vqiiyk peptide and tau antibody's fab domain.
no
immune system
2021-10-29
2022-11-02
x-ray diffraction
2
0.295
0.196
N.A.
N.A.
0
auth_asym_id
FabH:FabL
IGHV1
IGLV4
H
L
QVQLQQSGAALVRPGTSVKVSCRASEYAFTNYVIEWVKQRPGQGLEWIGVINPGSGGTNYNEKFKGKATLIADKSSSTAYMQLSSLTSDDSAVYFCARSTYYSGALDYWGQGTSVTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPSQSITCNVAHPASSTKVDKKIEPR
QLVLTQSSSASFSLGASAKLTCTLSSQHSTYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSSSGADRYLSISNIQPEDEAIYICGVGDTIKEQFVYVFGGGTKVTVLGQPKSTPTLTVFPPSSEELKENKATLVCLISNFSPSGVTVAWKANGTPITQGVDTSNPTKEGNKFMASSFLHLTSDQWRSHNSFTCQVTHEGDTVEKSLSPAEC
QVQLQQSGAALVRPGTSVKVSCRASEYAFTNYVIEWVKQRPGQGLEWIGVINPGSGGTNYNEKFKGKATLIADKSSSTAYMQLSSLTSDDSAVYFCARSTYYSGALDYWGQGTSVTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPSQSITCNVAHPASSTKVDKKIEPR
QLVLTQSSSASFSLGASAKLTCTLSSQHSTYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSSSGADRYLSISNIQPEDEAIYICGVGDTIKEQFVYVFGGGTKVTVLGQPKSTPTLTVFPPSSEELKENKATLVCLISNFSPSGVTVAWKANGTPITQGVDTSNPTKEGNKFMASSFLHLTSDQWRSHNSFTCQVTHEGDTVEKSLSPAEC
23.627176
23.805038
219
219
219
219
219
219
101
heavy chain of fab
light chain of fab
mus musculus
mus musculus
C
peptide
vqiiyk peptide
homo sapiens
25
17
0.89
HL
train
7vuh_N
7vuh
cryo-em structure of a class a orphan gpcr
yes
membrane protein
2021-11-02
2021-12-29
electron microscopy
3.22
N.A.
N.A.
34916631
10.1038/s41422-021-00591-w
0
auth_asym_id
VHH
IGHV3
N.A.
N
N.A.
MKYLLPTAAAGLLLLAAQPAMAMQVQLQESGGGLVQPGGSLRLSCAASGFTFSNYKMNWVRQAPGKGLEWVSDISQSGASISYTGSVKGRFTISRDNAKNTLYLQMNSLKPEDTAVYYCARCPAPFTRDCFDVTSTTYAYRGQGTQVTVSSHHHHHH
N.A.
QVQLQESGGGLVQPGGSLRLSCAASGFTFSNYKMNWVRQAPGKGLEWVSDISQSGASISYTGSVKGRFTISRDNAKNTLYLQMNSLKPEDTAVYYCARCPAPFTRDCFDVTSTTYAYRGQGTQVTV
N.A.
13.487675
0
157
0
126
0
126
0
0
nanobody 35
N.A.
homo sapiens
N.A.
A;B
protein;protein
isoform gnas-2 of guanine nucleotide-binding protein g(s) subunit alpha isoforms short;guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1
homo sapiens;homo sapiens
46;30
14;11
0.58;0.73
H_only
train
7vui_N
7vui
cryo-em structure of a class a orphan gpcr
yes
membrane protein
2021-11-02
2021-12-29
electron microscopy
3.3
N.A.
N.A.
34916631
10.1038/s41422-021-00591-w
0
auth_asym_id
VHH
IGHV3
N.A.
N
N.A.
MKYLLPTAAAGLLLLAAQPAMAMQVQLQESGGGLVQPGGSLRLSCAASGFTFSNYKMNWVRQAPGKGLEWVSDISQSGASISYTGSVKGRFTISRDNAKNTLYLQMNSLKPEDTAVYYCARCPAPFTRDCFDVTSTTYAYRGQGTQVTVSSHHHHHH
N.A.
QVQLQESGGGLVQPGGSLRLSCAASGFTFSNYKMNWVRQAPGKGLEWVSDISQSGASISYTGSVKGRFTISRDNAKNTLYLQMNSLKPEDTAVYYCARCPAPFTRDCFDVTSTTYAYRGQGTQVTV
N.A.
13.722149
0
157
0
126
0
126
0
0
nanobody 35
N.A.
homo sapiens
N.A.
A;B
protein;protein
isoform gnas-2 of guanine nucleotide-binding protein g(s) subunit alpha isoforms short;guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1
homo sapiens;homo sapiens
48;30
14;11
0.56;0.73
H_only
train
7sp9_B
7sp9
chlorella virus hyaluronan synthase in the glcnac-primed channel-closed state
yes
membrane protein
2021-11-02
2022-04-06
electron microscopy
2.9
N.A.
N.A.
35355017
10.1038/s41586-022-04534-2
0
auth_asym_id
VHH
IGHV3
N.A.
B
N.A.
QVQLVESGGGLVQAGGSLKVSCAASGRAFKTYRMAWFRQAPGKEREFVSGISALETTYYADSVKGRFTISRDNTKNTVSLQMDSLKPEDTAVYYCAARRYGGTDYTTTGSYDYWGQGTQVTVSSHHHHHHEPEA
N.A.
QVQLVESGGGLVQAGGSLKVSCAASGRAFKTYRMAWFRQAPGKEREFVSGISALETTYYADSVKGRFTISRDNTKNTVSLQMDSLKPEDTAVYYCAARRYGGTDYTTTGSYDYWGQGTQVTVS
N.A.
13.76265
0
134
0
123
0
123
0
0
nanobody 872
N.A.
lama glama
N.A.
A
protein
hyaluronan synthase
paramecium bursaria chlorella virus cz-2
30
12
0.86
H_only
train
7sp9_C
7sp9
chlorella virus hyaluronan synthase in the glcnac-primed channel-closed state
yes
membrane protein
2021-11-02
2022-04-06
electron microscopy
2.9
N.A.
N.A.
35355017
10.1038/s41586-022-04534-2
0
auth_asym_id
VHH
IGHV3
N.A.
C
N.A.
QVQLVESGGGLVQAGGSLRLACAASGRIFSSDTLAWFRRAPGKEREFVAASRWSGGGTDYADSVKGRFTFSRDNTRNTMCLEMNSLKPEDTAVYYCALRTARDSYYYTRNPTGYDYWGQGTQVTVSSHHHHHHEPEA
N.A.
QVQLVESGGGLVQAGGSLRLACAASGRIFSSDTLAWFRRAPGKEREFVAASRWSGGGTDYADSVKGRFTFSRDNTRNTMCLEMNSLKPEDTAVYYCALRTARDSYYYTRNPTGYDYWGQGTQ
N.A.
14.020425
0
137
0
117
0
122
0
0
nanobody 881
N.A.
lama glama
N.A.
A
protein
hyaluronan synthase
paramecium bursaria chlorella virus cz-2
38
13
0.76
H_only
train
7spa_B
7spa
chlorella virus hyaluronan synthase in the glcnac-primed, channel-open state
yes
membrane protein
2021-11-02
2022-04-06
electron microscopy
2.8
N.A.
N.A.
35355017
10.1038/s41586-022-04534-2
0
auth_asym_id
VHH
IGHV3
N.A.
B
N.A.
QVQLVESGGGLVQAGGSLKVSCAASGRAFKTYRMAWFRQAPGKEREFVSGISALETTYYADSVKGRFTISRDNTKNTVSLQMDSLKPEDTAVYYCAARRYGGTDYTTTGSYDYWGQGTQVTVSSHHHHHHEPEA
N.A.
QVQLVESGGGLVQAGGSLKVSCAASGRAFKTYRMAWFRQAPGKEREFVSGISALETTYYADSVKGRFTISRDNTKNTVSLQMDSLKPEDTAVYYCAARRYGGTDYTTTGSYDYWGQGTQVTVS
N.A.
13.825746
0
134
0
123
0
123
0
0
nanobody 872
N.A.
lama glama
N.A.
A
protein
hyaluronan synthase
paramecium bursaria chlorella virus cz-2
31
14
0.88
H_only
train
7spa_C
7spa
chlorella virus hyaluronan synthase in the glcnac-primed, channel-open state
yes
membrane protein
2021-11-02
2022-04-06
electron microscopy
2.8
N.A.
N.A.
35355017
10.1038/s41586-022-04534-2
0
auth_asym_id
VHH
IGHV3
N.A.
C
N.A.
QVQLVESGGGLVQAGGSLRLACAASGRIFSSDTLAWFRRAPGKEREFVAASRWSGGGTDYADSVKGRFTFSRDNTRNTMCLEMNSLKPEDTAVYYCALRTARDSYYYTRNPTGYDYWGQGTQVTVSSHHHHHHEPEA
N.A.
QVQLVESGGGLVQAGGSLRLACAASGRIFSSDTLAWFRRAPGKEREFVAASRWSGGGTDYADSVKGRFTFSRDNTRNTMCLEMNSLKPEDTAVYYCALRTARDSYYYTRNPTGYDYWGQGTQ
N.A.
14.033851
0
137
0
117
0
122
0
0
nanobody 881
N.A.
lama glama
N.A.
A
protein
hyaluronan synthase
paramecium bursaria chlorella virus cz-2
40
14
0.82
H_only
train
7vux_H_L
7vux
complex structure of pd1 and 609a-fab
no
immune system
2021-11-04
2021-11-17
x-ray diffraction
1.64
0.202
0.16
35239451
10.1080/19420862.2022.2044435
0
auth_asym_id
FabH:FabL
IGHV3
IGKV3
H
L
EVKLVESGGGLVQPGGSLRLSCAASGFAFSSYDMSWVRQAPGKRLEWVATISGGGRYTYYPDTVKGRFTISRDNAKNSHYLQMNSLRAEDTAVYFCASPYGGYFDVWGQGTLVTVSSASTKGPSVFPLAPCSRSTSESTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTKTYTCNVDHKPSNTKVDKRVE
EIVLTQSPATLSLSPGERATLSCRASQSISNFLHWYQQKPGQAPRLLIKYASQSISGIPARFSGSGSGTDFTLTISSLEPEDFAVYFCQQSNSWPHTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
EVKLVESGGGLVQPGGSLRLSCAASGFAFSSYDMSWVRQAPGKRLEWVATISGGGRYTYYPDTVKGRFTISRDNAKNSHYLQMNSLRAEDTAVYFCASPYGGYFDVWGQGTLVTVSSASTKGPSVFPLAPCSRSTSESTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTKTYTCNVDHKPSNTKVDKRVE
EIVLTQSPATLSLSPGERATLSCRASQSISNFLHWYQQKPGQAPRLLIKYASQSISGIPARFSGSGSGTDFTLTISSLEPEDFAVYFCQQSNSWPHTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGE
22.928583
22.66744
216
214
216
213
216
213
98
heavy chain of fab fragment
light chain of fab fragment
homo sapiens
homo sapiens
A
protein
programmed cell death protein 1
homo sapiens
51
21
0.78
HL
train
7vuy_S
7vuy
cryo-em structure of pseudoallergen receptor mrgprx2 complex with pamp-12. state1
no
membrane protein
2021-11-04
2021-12-01
electron microscopy
2.84
N.A.
N.A.
34789875
10.1038/s41586-021-04077-y
0
auth_asym_id
scFv
N.A.
N.A.
S
N.A.
MLLVNQSHQGFNKEHTSKMVSAIVLYVLLAAAAHSAFAVQLVESGGGLVQPGGSRKLSCSASGFAFSSFGMHWVRQAPEKGLEWVAYISSGSGTIYYADTVKGRFTISRDDPKNTLFLQMTSLRSEDTAMYYCVRSIYYYGSSPFDFWGQGTTLTVSAGGGGSGGGGSGGGGSADIVMTQATSSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLTISRLEAEDVGVYYCMQHLEYPLTFGAGTKLEL
N.A.
VQLVESGGGLVQPGGSRKLSCSASGFAFSSFGMHWVRQAPEKGLEWVAYISSGSGTIYYADTVKGRFTISRDDPKNTLFLQMTSLRSEDTAMYYCVRSIYYYGSSPFDFWGQGTTLTVSAGGGGSGGGGSGGGGSADIVMTQATSSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLTISRLEAEDVGVYYCMQHLEYPLTFGAGTKLEL
N.A.
17.26381
0
285
0
233
0
247
0
0
scfv
N.A.
homo sapiens
N.A.
A;B
protein;protein
guanine nucleotide-binding protein g(i) subunit alpha-1;guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1
homo sapiens;homo sapiens
33;23
18;9
0.86;0.75
H_only
train
7vuz_S
7vuz
cryo-em structure of pseudoallergen receptor mrgprx2 complex with pamp-12, state2
no
membrane protein
2021-11-04
2021-12-01
electron microscopy
2.89
N.A.
N.A.
34789875
10.1038/s41586-021-04077-y
0
auth_asym_id
scFv
N.A.
N.A.
S
N.A.
MLLVNQSHQGFNKEHTSKMVSAIVLYVLLAAAAHSAFAVQLVESGGGLVQPGGSRKLSCSASGFAFSSFGMHWVRQAPEKGLEWVAYISSGSGTIYYADTVKGRFTISRDDPKNTLFLQMTSLRSEDTAMYYCVRSIYYYGSSPFDFWGQGTTLTVSAGGGGSGGGGSGGGGSADIVMTQATSSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLTISRLEAEDVGVYYCMQHLEYPLTFGAGTKLEL
N.A.
VQLVESGGGLVQPGGSRKLSCSASGFAFSSFGMHWVRQAPEKGLEWVAYISSGSGTIYYADTVKGRFTISRDDPKNTLFLQMTSLRSEDTAMYYCVRSIYYYGSSPFDFWGQGTTLTVSAGGGGSGGGGSGGGGSADIVMTQATSSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLTISRLEAEDVGVYYCMQHLEYPLTFGAGTKLEL
N.A.
17.317894
0
285
0
233
0
247
0
0
scfv
N.A.
homo sapiens
N.A.
A;B
protein;protein
guanine nucleotide-binding protein g(i) subunit alpha-1;guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1
homo sapiens;homo sapiens
35;25
20;10
0.87;0.83
H_only
train