pdb stringlengths 4 4 | Hchain stringclasses 59
values | Lchain stringclasses 60
values | model int64 0 76 | antigen_chain stringclasses 386
values | antigen_type stringclasses 24
values | antigen_het_name stringclasses 240
values | antigen_name stringlengths 1 396 ⌀ | short_header stringclasses 448
values | date stringlengths 8 8 | compound stringlengths 4 243 | organism stringlengths 3 175 ⌀ | heavy_species stringclasses 121
values | light_species stringclasses 67
values | antigen_species stringclasses 937
values | authors stringlengths 6 762 | resolution stringlengths 1 8 | method stringclasses 10
values | r_free stringclasses 354
values | r_factor stringclasses 342
values | scfv bool 2
classes | engineered bool 2
classes | heavy_subclass stringclasses 14
values | light_subclass stringclasses 35
values | light_ctype stringclasses 3
values | affinity float64 0 0 ⌀ | delta_g float64 -16.91 -5.04 ⌀ | affinity_method stringclasses 11
values | temperature float64 4 37 ⌀ | pmid stringclasses 157
values |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
6lxj | E | F | 0 | B | protein | null | neuraminidase | HYDROLASE/IMMUNE SYSTEM | 02/11/20 | Crystal structure of human Z2B3 Fab in complex with influenza virus neuraminidase from A/Anhui/1/2013 (H7N9) | INFLUENZA A VIRUS (A/ANHUI/1-BALF_RG44/2013(H7N9)); HOMO SAPIENS | homo sapiens | homo sapiens | influenza a virus (a/anhui/1-balf_rg44/2013(h7n9)) | Jiang, H., Peng, W., Qi, J., Chai, Y., Song, H., Shi, Y., Gao, G.F., Wu, Y. | 2.903 | X-RAY DIFFRACTION | 0.241 | 0.193 | false | true | IGHV1 | IGLV2 | Lambda | null | null | null | null | null |
6cwd | G | g | 0 | H | protein | null | capsid protein | VIRAL PROTEIN/IMMUNE SYSTEM | 03/30/18 | Hepatitis B core-antigen in complex with scFv e13 | ORYCTOLAGUS CUNICULUS; HEPATITIS B VIRUS GENOTYPE D SUBTYPE ADW | oryctolagus cuniculus | null | hepatitis b virus genotype d subtype adw | Eren, E., Steven, A.C., Wingfield, P.T. | 3.33 | X-RAY DIFFRACTION | 0.282 | 0.242 | true | true | unknown | unknown | unknown | null | null | null | null | null |
1ahw | E | D | 0 | F | protein | null | tissue factor | COMPLEX (IMMUNOGLOBULIN/TISSUE FACTOR) | 04/10/97 | A COMPLEX OF EXTRACELLULAR DOMAIN OF TISSUE FACTOR WITH AN INHIBITORY FAB (5G9) | HOMO SAPIENS; MUS MUSCULUS | mus musculus | mus musculus | homo sapiens | Huang, M., Syed, R., Stura, E.A., Stone, M.J., Stefanko, R.S., Ruf, W., Edgington, T.S., Wilson, I.A. | 3.0 | X-RAY DIFFRACTION | 0.285 | 0.217 | false | false | IGHV14 | IGKV14 | Kappa | null | null | null | null | null |
6cue | H | L | 0 | D | protein | null | envelope glycoprotein gp41 | VIRAL PROTEIN | 03/26/18 | Cryo-EM structure at 4.0 A resolution of vaccine-elicited antibody vFP7.04 in complex with HIV-1 Env BG505 DS-SOSIP, and antibodies VRC03 and PGT122 | HUMAN IMMUNODEFICIENCY VIRUS 1; MUS MUSCULUS; HOMO SAPIENS | mus musculus | mus musculus | human immunodeficiency virus 1 | Acharya, P., Carragher, B., Potter, C.S., Kwong, P.D. | 4.0 | ELECTRON MICROSCOPY | null | null | false | true | IGHV1 | IGKV1 | Kappa | null | null | null | null | null |
5y9f | X | W | 0 | G | protein | null | major capsid protein l1 | VIRAL PROTEIN/IMMUNE SYSTEM | 08/24/17 | Crystal structure of HPV59 pentamer in complex with the Fab fragment of antibody 28F10 | HUMAN PAPILLOMAVIRUS TYPE 59; MUS MUSCULUS | mus musculus | mus musculus | human papillomavirus type 59 | Li, S.W., Li, Z.H. | 3.35 | X-RAY DIFFRACTION | 0.261 | 0.230 | false | false | IGHV5 | IGKV1 | Kappa | null | null | null | null | null |
6vrt | H | L | 0 | null | null | null | null | IMMUNE SYSTEM | 02/09/20 | LT1009 humanized antibody Fab fragment in complex with calcium | MUS MUSCULUS | mus musculus | mus musculus | null | Fleming, J.K., Huxford, T. | 2.555 | X-RAY DIFFRACTION | 0.260 | 0.209 | false | true | IGHV5 | IGKV17 | Kappa | null | null | null | null | null |
7uar | F | G | 0 | C | protein | null | spike glycoprotein | VIRAL PROTEIN | 03/13/22 | Structure of the SARS-CoV-2 S 6P trimer in complex with the neutralizing antibody Fab fragment, C1717 | SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS 2; HOMO SAPIENS | homo sapiens | homo sapiens | severe acute respiratory syndrome coronavirus2 | Barnes, C.O. | 3.5 | ELECTRON MICROSCOPY | null | null | false | true | IGHV1 | IGLV1 | Lambda | null | null | null | null | null |
5gzo | C | D | 0 | B | protein | null | genome polyprotein | VIRAL PROTEIN/IMMUNE SYSTEM | 09/29/16 | Structure of neutralizing antibody bound to Zika envelope protein | HOMO SAPIENS; ZIKA VIRUS | homo sapiens | homo sapiens | zika virus | Wang, Q., Yang, H., Liu, X., Dai, L., Ma, T., Qi, J., Wong, G., Peng, R., Liu, S., Li, J., Li, S., Song, J., Liu, J., He, J., Yuan, H., Xiong, Y., Liao, Y., Li, J., Yang, J., Tong, Z., Griffin, B., Bi, Y., Liang, M., Xu, X., Cheng, G., Wang, P., Qiu, X., Kobinger, G., Shi, Y., Yan, J., Gao, G.F. | 2.755 | X-RAY DIFFRACTION | 0.277 | 0.231 | false | true | IGHV4 | IGKV1 | Kappa | 0 | -9.258056 | SPR | null | TBD |
6pzy | I | L | 0 | F | protein | null | neuraminidase | VIRAL PROTEIN/IMMUNE SYSTEM | 08/01/19 | CryoEM derived model of NA-73 Fab in complex with N9 Shanghai2 | INFLUENZA A VIRUS (A/ENVIRONMENT/SHANGHAI/S1439/2013(H7N9)); HOMO SAPIENS | homo sapiens | homo sapiens | influenza a virus(a/environment/shanghai/s1439/2013(h7n9)) | Ward, A.B., Turner, H.L., Zhu, X. | 3.17 | ELECTRON MICROSCOPY | null | null | false | true | IGHV4 | IGLV1 | Lambda | null | null | null | null | null |
6x9x | null | B | 0 | null | null | null | null | ANTIVIRAL PROTEIN, IMMUNE SYSTEM | 06/03/20 | Crystal structure of Fab fragment of Anti-HCV E2 antibody (HC84.26) | HOMO SAPIENS | null | homo sapiens | null | Shahid, S., Mariuzza, R.A. | 1.8 | X-RAY DIFFRACTION | 0.210 | 0.178 | false | true | null | IGLV3 | Lambda | null | null | null | null | null |
5mu2 | K | L | 0 | U | peptide | null | synthetic peptide containing the cii583-591 epitope ofcollagen type ii | IMMUNE SYSTEM | 01/12/17 | ACC1 Fab fragment in complex with CII583-591 (CG10) | MUS MUSCULUS; SYNTHETIC CONSTRUCT | mus musculus | mus musculus | mus musculus | Dobritzsch, D., Holmdahl, R., Ge, C. | 2.7 | X-RAY DIFFRACTION | 0.228 | 0.206 | false | false | IGHV6 | IGKV3 | Kappa | null | null | null | null | null |
4llv | H | L | 0 | null | null | null | null | IMMUNE SYSTEM | 07/09/13 | The structure of the unbound form of anti-HIV antibody 4E10 Fv | HOMO SAPIENS | homo sapiens | homo sapiens | null | Finton, K.A.K., Rupert, P.B., Strong, R.K. | 2.39 | X-RAY DIFFRACTION | 0.245 | 0.216 | false | true | IGHV1 | IGKV3 | Kappa | null | null | null | null | null |
5jpj | null | B | 0 | null | null | null | null | IMMUNE SYSTEM | 05/03/16 | Crystal structure of 6aJL2-R24G | HOMO SAPIENS | null | homo sapiens | null | Pelaez-Aguilar, A.E., Diaz-Vilchis, A., Amero, C., Becerril, B., Rudino-Pinera, E. | 2.0 | X-RAY DIFFRACTION | 0.249 | 0.195 | false | true | null | IGLV6 | Lambda | null | null | null | null | null |
3lqa | H | L | 0 | G | C | protein | protein | NA | NA | envelope glycoprotein gp160 | t-cell surface glycoprotein cd4 | IMMUNE SYSTEM | 02/08/10 | Crystal structure of clade C gp120 in complex with sCD4 and 21c Fab | HOMO SAPIENS; HIV-1 | homo sapiens | homo sapiens | hiv-1 | homo sapiens | Diskin, R., Marcovecchio, P.M., Bjorkman, P.J. | 3.4 | X-RAY DIFFRACTION | 0.322 | 0.234 | false | true | IGHV1 | IGLV1 | Lambda | 0.000002 | -7.9 | SPR | 25 | 20357769 |
7omn | C | null | 0 | null | null | null | null | IMMUNE SYSTEM | 05/24/21 | Anti-EphA1 JD1-1 VH domain | HOMO SAPIENS | homo sapiens | null | null | Ereno Orbea, J., Nilvebrant, J., Sidhu, S., Julien, J.P. | 1.7 | X-RAY DIFFRACTION | 0.222 | 0.203 | false | true | IGHV3 | null | null | null | null | null | null | null |
6fys | H | null | 0 | null | null | null | null | VIRAL PROTEIN | 03/12/18 | Structure of single domain antibody SD83 | LAMA GLAMA | lama glama | null | null | Laursen, N.S., Wilson, I.A. | 2.0 | X-RAY DIFFRACTION | 0.231 | 0.201 | false | true | IGHV1 | null | null | null | null | null | null | null |
5whj | H | L | 0 | null | null | null | null | IMMUNE SYSTEM | 07/17/17 | Crystal structure of Fab fragment of anti-FcRn antibody DX-2507 | HOMO SAPIENS | homo sapiens | homo sapiens | null | Edwards, T.E., Fairman, J.W., Nixon, A.E., Kenniston, J.A. | 2.15 | X-RAY DIFFRACTION | 0.225 | 0.180 | false | true | IGHV3 | IGLV2 | Lambda | null | null | null | null | null |
6e63 | B | C | 0 | A | protein | null | pf48/45 | IMMUNE SYSTEM | 07/23/18 | Crystal structure of malaria transmission-blocking antigen Pfs48/45 6C in complex with antibody TB31F | PLASMODIUM FALCIPARUM; HOMO SAPIENS | homo sapiens | homo sapiens | plasmodium falciparum | Kundu, P., Semesi, A., Julien, J.P. | 2.6 | X-RAY DIFFRACTION | 0.240 | 0.202 | false | true | IGHV3 | IGLV6 | Lambda | 0 | -11.503031 | SPR | null | TBD |
4s11 | A | null | 0 | null | null | null | null | IMMUNE SYSTEM | 01/07/15 | Gelsolin nanobody shielding mutant plasma gelsolin from furin proteolysis | LAMA GLAMA | lama glama | null | null | Wongsantichon, J., Loonchanta, A., Robinson, R.C., Gettemans, J. | 1.998 | X-RAY DIFFRACTION | 0.206 | 0.159 | false | true | IGHV1 | null | null | null | null | null | null | null |
6i07 | B | b | 0 | D | protein | null | epithelial cell adhesion molecule | IMMUNE SYSTEM | 10/25/18 | Crystal structure of EpCAM in complex with scFv | HOMO SAPIENS | homo sapiens | null | homo sapiens | Casaletto, J.B., Geddie, M.L., Abu-Yousif, A.O., Masson, K., Fulgham, A., Boudot, A., Maiwald, T., Kearns, J.D., Kohli, N., Su, S., Razlog, M., Raue, A., Kalra, A., Hakansson, M., Logan, D.T., Welin, M., Chattopadhyay, S., Harms, B.D., Nielsen, U.B., Schoeberl, B., Lugovskoy, A.A., MacBeath, G. | 2.35 | X-RAY DIFFRACTION | 0.279 | 0.230 | true | true | unknown | unknown | unknown | null | null | null | null | null |
3lh2 | K | O | 0 | V | protein | null | 4e10_1vi7a_s0_002_n (t88) | IMMUNE SYSTEM | 01/21/10 | Crystal structure of HIV epitope-scaffold 4E10_1VI7A_S0_002_N 4E10 Fv complex | ARTIFICIAL GENE; HOMO SAPIENS | homo sapiens | homo sapiens | artificial gene | Holmes, M.A. | 2.65 | X-RAY DIFFRACTION | 0.270 | 0.222 | false | true | IGHV1 | IGKV3 | Kappa | 0 | -11.25 | SPR | null | 20826338 |
3oaz | M | K | 0 | null | null | null | null | IMMUNE SYSTEM | 08/06/10 | A non-self sugar mimic of the HIV glycan shield shows enhanced antigenicity | HOMO SAPIENS | homo sapiens | homo sapiens | null | Doores, K.J., Fulton, Z., Hong, V., Patel, M.K., Scanlan, C.N., Wormald, M.R., Finn, M.G., Burton, D.R., Wilson, I.A., Davis, B.G | 1.75 | X-RAY DIFFRACTION | 0.217 | 0.176 | false | true | IGHV3 | IGKV1 | Kappa | null | null | null | null | null |
1zvo | C | B | 0 | null | null | null | null | IMMUNE SYSTEM | 06/02/05 | Semi-extended solution structure of human myeloma immunoglobulin D determined by constrained X-ray scattering | HOMO SAPIENS | homo sapiens | homo sapiens | null | Sun, Z., Almogren, A., Furtado, P.B., Chowdhury, B., Kerr, M.A., Perkins, S.J. | NOT | SOLUTION SCATTERING / HOMOLOGY MODEL | null | null | false | false | IGHV4 | IGLV1 | Lambda | null | null | null | null | null |
6xcm | H | L | 0 | C | protein | null | spike glycoprotein | VIRAL PROTEIN/IMMUNE SYSTEM | 06/08/20 | Structure of the SARS-CoV-2 spike glycoprotein in complex with the C105 neutralizing antibody Fab fragment (state 1) | SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS 2; HOMO SAPIENS | homo sapiens | homo sapiens | severe acute respiratory syndrome coronavirus2 | Barnes, C.O., Bjorkman, P.J. | 3.42 | ELECTRON MICROSCOPY | null | null | false | true | IGHV3 | IGLV2 | Lambda | null | null | null | null | null |
6iw2 | K | L | 0 | J | protein | null | envelope protein e | VIRAL PROTEIN/IMMUNE SYSTEM | 12/04/18 | Crystal structure of 5A ScFv in complex with YFV-17D sE in prefusion state | YELLOW FEVER VIRUS (STRAIN 17D VACCINE); HOMO SAPIENS | homo sapiens | homo sapiens | yellow fever virus (strain 17d vaccine) | Lu, X.S., Xiao, H.X., Li, S.H., Pang, X.F. | 2.9 | X-RAY DIFFRACTION | 0.272 | 0.238 | false | true | IGHV4 | IGKV1 | Kappa | null | null | null | null | null |
7ws1 | G | F | 0 | B | protein | null | spike glycoprotein | VIRAL PROTEIN/IMMUNE SYSTEM | 01/28/22 | Structures of Omicron Spike complexes illuminate broad-spectrum neutralizing antibody development | SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS 2; HOMO SAPIENS | homo sapiens | homo sapiens | severe acute respiratory syndrome coronavirus2 | Guo, H., Gao, Y., Ji, X., Yang, H. | 3.4 | ELECTRON MICROSCOPY | null | null | false | true | IGHV3 | IGKV1 | Kappa | null | null | null | null | null |
4xvu | C | D | 0 | B | protein | null | atpase get3 | HYDROLASE/TRANSPORT PROTEIN | 01/28/15 | Structure of Get3 bound to the transmembrane domain of Nyv1 | SACCHAROMYCES CEREVISIAE (ATCC 204508 / S288C); SACCHAROMYCES CEREVISIAE; HOMO SAPIENS, SYNTHETIC CONSTRUCT | homo sapiens, synthetic construct | homo sapiens, synthetic construct | saccharomyces cerevisiae (atcc 204508 / s288c) | Mateja, A., Paduch, M., Chang, H.-Y., Szydlowska, A., Kossiakoff, A.A., Hegde, R.S., Keenan, R.J. | 2.35 | X-RAY DIFFRACTION | 0.234 | 0.197 | false | true | IGHV3 | IGKV1 | Kappa | null | null | null | null | null |
4s1q | H | L | 0 | G | protein | null | hiv-1 gp120 core | VIRAL PROTEIN/IMMUNE SYSTEM | 01/14/15 | Crystal structure of a VRC01-lineage antibody, 45-VRC01.H03+06.D-001739, in complex with clade A/E HIV-1 gp120 core | HOMO SAPIENS | homo sapiens | homo sapiens | homo sapiens | Kwon, Y.D., Yang, Y., Zhang, B., Kwong, P.D. | 2.4 | X-RAY DIFFRACTION | 0.258 | 0.219 | false | true | unknown | IGKV3 | Kappa | null | null | null | null | null |
3j5m | D | C | 0 | A | protein | null | bg505 sosip gp120 | VIRAL PROTEIN/IMMUNE SYSTEM | 10/26/13 | Cryo-EM structure of the BG505 SOSIP.664 HIV-1 Env trimer with 3 PGV04 Fabs | HUMAN IMMUNODEFICIENCY VIRUS 1; HOMO SAPIENS | homo sapiens | homo sapiens | human immunodeficiency virus 1 | Lyumkis, D., Julien, J.-P., Wilson, I.A., Ward, A.B. | 5.8 | ELECTRON MICROSCOPY | null | null | false | true | unknown | unknown | unknown | null | null | null | null | null |
7kn5 | C | null | 0 | A | protein | null | spike protein s1 | VIRAL PROTEIN/IMMUNE SYSTEM | 11/04/20 | Crystal structure of SARS-CoV-2 receptor binding domain complexed with nanobodies VHH E and U | SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS 2; VICUGNA PACOS | vicugna pacos | null | severe acute respiratory syndrome coronavirus2 | Liu, H., Yuan, M., Zhu, X., Wu, N.C., Wilson, I.A. | 1.87 | X-RAY DIFFRACTION | 0.213 | 0.177 | false | true | IGHV1 | null | null | null | null | null | null | null |
3b2u | T | U | 0 | S | protein | null | epidermal growth factor receptor | IMMUNE SYSTEM/TRANSFERASE | 10/19/07 | Crystal structure of isolated domain III of the extracellular region of the epidermal growth factor receptor in complex with the Fab fragment of IMC-11F8 | HOMO SAPIENS | homo sapiens | homo sapiens | homo sapiens | Ferguson, K.M., Li, S., Kussie, P. | 2.58 | X-RAY DIFFRACTION | 0.291 | 0.227 | false | true | IGHV4 | IGKV3 | Kappa | 0 | -12.27 | SPR | 25 | 18275813 |
6cdi | 3 | 4 | 0 | A | protein | null | glycoprotein gp41 | VIRAL PROTEIN | 02/08/18 | Cryo-EM structure at 3.6 A resolution of vaccine-elicited antibody vFP16.02 in complex with HIV-1 Env BG505 DS-SOSIP, and antibodies VRC03 and PGT122 | HUMAN IMMUNODEFICIENCY VIRUS 1; HOMO SAPIENS | homo sapiens | homo sapiens | human immunodeficiency virus 1 | Acharya, P., Xu, K., Liu, K., Carragher, B., Potter, C.S., Kwong, P.D. | 3.6 | ELECTRON MICROSCOPY | null | null | false | true | IGHV1 | IGKV1 | Kappa | null | null | null | null | null |
7jv6 | F | G | 0 | E | protein | null | sars-cov-2 spike glycoprotein | VIRAL PROTEIN/IMMUNE SYSTEM | 08/20/20 | SARS-CoV-2 spike in complex with the S2H13 neutralizing antibody (closed conformation) | SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS 2; HOMO SAPIENS | homo sapiens | homo sapiens | severe acute respiratory syndrome coronavirus2 | Park, Y.J., Tortorici, M.A., Walls, A.C., Czudnochowski, N., Seattle Structural Genomics Center for Infectious Disease (SSGCID), Snell, G., Veesler, D. | 3 | ELECTRON MICROSCOPY | null | null | false | true | IGHV3 | IGLV7 | Lambda | null | null | null | null | null |
7nd4 | D | E | 0 | A | protein | null | spike glycoprotein | VIRAL PROTEIN, IMMUNE SYSTEM | 01/30/21 | EM structure of SARS-CoV-2 Spike glycoprotein in complex with COVOX-88 Fab | SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS 2; HOMO SAPIENS | homo sapiens | homo sapiens | severe acute respiratory syndrome coronavirus2 | Duyvesteyn, H.M.E., Zhao, Y., Ren, J., Stuart, D. | 3.6 | ELECTRON MICROSCOPY | null | null | false | true | IGHV4 | IGLV1 | Lambda | null | null | null | null | null |
3pnw | W | V | 0 | X | protein | null | tudor domain-containing protein 3 | PROTEIN BINDING/IMMUNE SYSTEM | 11/19/10 | Crystal Structure of the tudor domain of human TDRD3 in complex with an anti-TDRD3 FAB | HOMO SAPIENS, SYNTHETIC CONSTRUCT; HOMO SAPIENS | synthetic | synthetic | homo sapiens | Loppnau, P., Tempel, W., Wernimont, A.K., Lam, R., Ravichandran, M., Adams-Cioaba, M.A., Persson, H., Sidhu, S.S., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Weigelt, J., Cossar, D., Structural Genomics Consortium (SGC) | 2.05 | X-RAY DIFFRACTION | 0.264 | 0.223 | false | true | IGHV3 | IGKV1 | Kappa | null | null | null | null | null |
6vor | C | D | 0 | null | null | null | null | IMMUNE SYSTEM | 01/31/20 | Crystal structure of macaque anti-HIV-1 antibody RM20E1 | MACACA MULATTA | macaca mulatta | macaca mulatta | null | Yuan, M., Wilson, I.A. | 1.85 | X-RAY DIFFRACTION | 0.252 | 0.224 | false | true | IGHV5 | IGKV2 | Kappa | null | null | null | null | null |
3q6f | H | G | 0 | null | null | null | null | IMMUNE SYSTEM | 12/31/10 | Crystal structure of Fab of human mAb 2909 specific for quaternary neutralizing epitope of HIV-1 gp120 | HOMO SAPIENS | homo sapiens | homo sapiens | null | Spurrier, B., Sampson, J., Totrov, M., Li, H., O'Neal, T., William, C., Robinson, J., Gorny, M.K., Zolla-Pazner, S., Kong, X.P. | 3.192 | X-RAY DIFFRACTION | 0.243 | 0.199 | false | false | IGHV3 | IGLV3 | Lambda | null | null | null | null | null |
1lgv | null | A | 0 | null | null | null | null | IMMUNE SYSTEM | 04/16/02 | Structure of a Human Bence-Jones Dimer Crystallized in U.S. Space Shuttle Mission STS-95: 100K | HOMO SAPIENS | null | homo sapiens | null | Terzyan, S.S., DeWitt, C.R., Ramsland, P.A., Bourne, P.C., Edmundson, A.B. | 1.95 | X-RAY DIFFRACTION | 0.245 | 0.200 | false | false | null | IGLV2 | Lambda | null | null | null | null | null |
7lsb | B | D | 0 | null | null | null | null | ANTITUMOR PROTEIN,IMMUNE SYSTEM | 02/18/21 | Structure of B1, a monoclonal VEGFR2 antibody parental of KD035 | HOMO SAPIENS | homo sapiens | homo sapiens | null | Depetris, R.S. | 2.492 | X-RAY DIFFRACTION | 0.254 | 0.184 | false | true | IGHV3 | IGLV3 | Lambda | null | null | null | null | null |
5u4l | B | null | 0 | A | protein | null | ricin | HYDROLASE/IMMUNE SYSTEM | 12/05/16 | RTA-V1C7_G29R-high-salt | RICINUS COMMUNIS; VICUGNA PACOS | vicugna pacos | null | ricinus communis | Rudolph, M.J., Mantis, N. | 2.5 | X-RAY DIFFRACTION | 0.257 | 0.209 | false | true | IGHV1 | null | null | null | null | null | null | null |
5ezj | A | B | 0 | null | null | null | null | IMMUNE SYSTEM | 11/26/15 | Crystal Structure of Fab of parasite invasion inhibitory antibody c1 - orthorhombic form | HOMO SAPIENS | homo sapiens | homo sapiens | null | Favuzza, A., Pluschke, G., Rudolph, M.G. | 1.95 | X-RAY DIFFRACTION | 0.247 | 0.198 | false | true | IGHV4 | IGKV6 | Kappa | null | null | null | null | null |
4ydk | H | L | 0 | G | protein | null | envelope glycoprotein gp160,envelope glycoprotein gp160 | IMMUNE SYSTEM | 02/22/15 | Crystal structure of broadly and potently neutralizing antibody C38-VRC16.01 in complex with HIV-1 clade AE strain 93TH057 gp120 | HUMAN IMMUNODEFICIENCY VIRUS 1; HOMO SAPIENS | homo sapiens | homo sapiens | human immunodeficiency virus 1 | Zhou, T., Moquin, S., Zheng, A., Kwong, P.D. | 2.051 | X-RAY DIFFRACTION | 0.206 | 0.166 | false | true | IGHV3 | IGKV1 | Kappa | null | null | null | null | null |
7nir | F | null | 0 | A | B | protein | protein | NA | NA | polymerase acidic protein | rna-directed rna polymerase catalytic subunit | VIRAL PROTEIN | 02/13/21 | 1918 H1N1 Viral influenza polymerase heterotrimer with Nb8191 core | INFLUENZA A VIRUS (STRAIN A/BREVIG MISSION/1/1918 H1N1); STAPHYLOCOCCUS AUREUS; CAMELIDAE MIXED LIBRARY; SYNTHETIC CONSTRUCT | camelidae mixed library | null | influenza a virus (strain a/brevigmission/1/1918 h1n1) | influenza a virus (strain a/brevigmission/1/1918 h1n1) | Keown, J.R., Carrique, L., Fodor, E., Grimes, J.M. | 6.7 | ELECTRON MICROSCOPY | null | null | false | true | IGHV1 | null | null | null | null | null | null | null |
6rvc | F | null | 0 | C | protein | null | protein patched homolog 1 | MEMBRANE PROTEIN | 05/31/19 | Crystal structure of Patched-1 ectodomain 2 (PTCH1-ECD2) in complex with nanobody 75 | HOMO SAPIENS; LAMA GLAMA | lama glama | null | homo sapiens | Rudolf, A.F., Kowatsch, C., El Omari, K., Malinauskas, T., Kinnebrew, M., Ansell, T.B., Bishop, B., Pardon, E., Schwab, R.A., Qian, M., Duman, R., Covey, D.F., Steyaert, J., Wagner, A., Sansom, M.S.P., Rohatgi, R., Siebold, C. | 2.2 | X-RAY DIFFRACTION | 0.241 | 0.204 | false | true | IGHV1 | null | null | null | null | null | null | null |
5cjx | A | C | 0 | J | K | protein | protein | NA | NA | bg505 env gp41 | bg505 env gp120 | VIRAL PROTEIN/IMMUNE SYSTEM | 07/15/15 | Crystal structure of 8ANC195 Fab in complex with BG505 SOSIP.664 HIV-1 Env trimer | HOMO SAPIENS; HUMAN IMMUNODEFICIENCY VIRUS 1 | homo sapiens | homo sapiens | human immunodeficiency virus 1 | human immunodeficiency virus 1 | Scharf, L., Bjorkman, P.J. | 3.584 | X-RAY DIFFRACTION | 0.286 | 0.239 | false | true | unknown | IGKV1 | Kappa | null | null | null | null | null |
6ktr | A | B | 0 | C | protein | null | fibroblast growth factor 19 | IMMUNE SYSTEM/PROTEIN BINDING | 08/28/19 | Crystal structure of fibroblast growth factor 19 in complex with Fab | HOMO SAPIENS | homo sapiens | homo sapiens | homo sapiens | Liu, H., Zheng, S., Hou, X., Liu, X., Lv, X., Li, Y., Li, W., Sui, J. | 2.59776 | X-RAY DIFFRACTION | 0.253 | 0.202 | false | true | IGHV3 | IGLV2 | Lambda | null | null | null | null | null |
7su0 | I | M | 0 | D | protein | null | cytotoxic t-lymphocyte protein 4 | IMMUNE SYSTEM | 11/15/21 | Crystal structure of an acidic pH-selective Ipilimumab variant Ipi.105 in complex with CTLA-4 | HOMO SAPIENS | homo sapiens | homo sapiens | homo sapiens | Lee, P.S., Chau, B., Strop, P. | 2.41 | X-RAY DIFFRACTION | 0.264 | 0.206 | false | true | IGHV3 | IGKV3 | Kappa | null | null | null | null | null |
7phw | B | C | 0 | A | protein | null | cysteine-rich protective antigen | IMMUNE SYSTEM | 08/18/21 | PfCyRPA bound to monoclonal antibody Cy.004 Fab fragment | PLASMODIUM FALCIPARUM (ISOLATE 3D7); GALLUS GALLUS | gallus gallus | gallus gallus | plasmodium falciparum (isolate 3d7) | Ragotte, R.J., Higgins, M.K. | 2.793 | X-RAY DIFFRACTION | 0.277 | 0.239 | false | true | unknown | unknown | unknown | null | null | null | null | null |
5anm | H | L | 0 | F | protein | null | ig epsilon chain c region | null | 09/07/15 | Crystal structure of IgE Fc in complex with a neutralizing antibody | HOMO SAPIENS | homo sapiens | homo sapiens | homo sapiens | Cohen, E.S., Dobson, C.L., Kack, H., Wang, B., Sims, D.A., Lloyd, C.O., England, E., Rees, D.G., Guo, H., Karagiannis, S.N., O'Brien, S., Persdotter, S., Ekdahl, H., Butler, R., Keyes, F., Oakley, S., Carlsson, M., Briend, E., Wilkinson, T., Anderson, I.K., Monk, P.D., vonWachenfeldt, K., Eriksson, P.O., Gould, H.J., V... | 2.85 | X-RAY DIFFRACTION | 0.25993 | 0.19553 | false | true | IGHV1 | IGLV1 | Lambda | 0 | -15.975251 | Kinetic Exclusion Assay | null | TBD |
7cvy | N | O | 0 | L | protein | null | e2 glycoprotein | IMMUNE SYSTEM/VIRUS | 08/27/20 | Cryo-EM structure of Chikungunya virus in complex with Fab fragments of mAb CHK-124 | MUS MUSCULUS; CHIKUNGUNYA VIRUS | mus musculus | mus musculus | chikungunya virus | Zhou, Q.F., Fox, J.M., Earnest, J.T., Ng, T.S., Kim, A.S., Fibriansah, G., Kostyuchenko, V.A., Shu, B., Diamond, M.S., Lok, S.M. | 5.2 | ELECTRON MICROSCOPY | null | null | false | false | IGHV6 | IGKV6 | Kappa | null | null | null | null | null |
7zwi | B | C | 0 | A | protein | null | gametocyte surface protein p45/48 | CELL ADHESION | 05/19/22 | Pfs48/45 C-terminal domain bound to fab fragment of monoclonal antibody 32F3 | Mus musculus; Plasmodium falciparum | mus musculus | mus musculus | plasmodium falciparum | Ko, K.T., Lennartz, F.L., Higgins, M.K. | 1.9 | X-RAY DIFFRACTION | 0.217 | 0.189 | false | true | IGHV5 | IGKV4 | Kappa | null | null | null | null | null |
2h8p | A | B | 0 | C | protein | null | kcsa channel | MEMBRANE PROTEIN | 06/07/06 | Structure of a K channel with an amide to ester substitution in the selectivity filter | MUS MUSCULUS; SYNTHETIC CONSTRUCT | mus musculus | mus musculus | null | Valiyaveetil, F.I., MacKinnon, R., Muir, T.W. | 2.25 | X-RAY DIFFRACTION | 0.242 | 0.233 | false | true | IGHV1 | IGKV5 | Kappa | null | null | null | null | null |
4kjq | E | F | 0 | B | protein | null | h(+)/cl(-) exchange transporter clca | tranport protein, membrane protein | 05/03/13 | Structure of the CLC-ec1 deltaNC construct in 100mM fluoride | MUS MUSCULUS; ESCHERICHIA COLI | mus musculus | mus musculus | escherichia coli | Lim, H.-H., Miller, C | 2.875 | X-RAY DIFFRACTION | 0.263 | 0.220 | false | true | IGHV4 | IGKV4 | Kappa | null | null | null | null | null |
6udj | A | R | 0 | P | protein | null | envelope glycoprotein gp120 | VIRAL PROTEIN/IMMUNE SYSTEM | 09/19/19 | HIV-1 bNAb 1-18 in complex with BG505 SOSIP.664 and 10-1074 | HOMO SAPIENS; HUMAN IMMUNODEFICIENCY VIRUS 1 | homo sapiens | homo sapiens | human immunodeficiency virus 1 | Abernathy, M.E., Barnes, C.O., Gristick, H.B., Bjorkman, P.J. | 2.5 | ELECTRON MICROSCOPY | null | null | false | true | IGHV4 | unknown | unknown | null | null | null | null | null |
4kkc | C | D | 0 | A | protein | null | h(+)/cl(-) exchange transporter clca | TRANSPORT PROTEIN | 05/05/13 | Structure of the E148A mutant of CLC-ec1 deltaNC construct in 20mM Bromide | MUS MUSCULUS; ESCHERICHIA COLI | mus musculus | mus musculus | escherichia coli | Lim, H.-H., Miller, C. | 3.18 | X-RAY DIFFRACTION | 0.264 | 0.231 | false | true | IGHV4 | IGKV4 | Kappa | null | null | null | null | null |
2gjz | B | A | 0 | null | null | null | null | IMMUNE SYSTEM | 03/31/06 | Structure of Catalytic Elimination Antibody 13G5 from a crystal in space group P2(1) | MUS MUSCULUS | mus musculus | mus musculus | null | Debler, E.W., Wilson, I.A. | 2.65 | X-RAY DIFFRACTION | 0.250 | 0.213 | false | false | IGHV2 | IGKV1 | Kappa | null | null | null | null | null |
5zxv | C | D | 0 | B | protein | null | mers-cov rbd | VIRAL PROTEIN | 05/21/18 | Structural definition of a unique neutralization epitope on the receptor-binding domain of MERS-CoV spike glycoprotein | MIDDLE EAST RESPIRATORY SYNDROME CORONAVIRUS; HOMO SAPIENS | homo sapiens | homo sapiens | middle east respiratory syndrome coronavirus | Zhang, S., Wang, X. | 4.482 | X-RAY DIFFRACTION | 0.343 | 0.307 | false | true | IGHV3 | IGLV1 | Lambda | 0 | -9.876551 | SPR | null | TBD |
5a1z | K | L | 0 | C | protein | null | envelope protein | null | 05/06/15 | Cryo-EM structure of Dengue virus serotype 2 strain PVP94-07 complexed with human antibody 2D22 Fab at 37 degrees C | DENGUE VIRUS 2; HOMO SAPIENS | homo sapiens | homo sapiens | dengue virus 2 | Fibriansah, G., Ibarra, K.D., Ng, T.S., Smith, S.A., Tan, J.L., Lim, X.N., Ooi, J.S.G., Kostyuchenko, V.A., Wang, J., de Silva, A.M., Harris, E., Crowe Jr, J.E., Lok, S.M. | 6.9 | ELECTRON MICROSCOPY | null | null | false | false | IGHV1 | IGLV1 | Lambda | null | null | null | null | null |
2r4r | H | L | 0 | A | protein | null | beta-2 adrenergic receptor | SIGNALING PROTEIN | 08/31/07 | Crystal structure of the human beta2 adrenoceptor | HOMO SAPIENS; MUS MUSCULUS | mus musculus | mus musculus | homo sapiens | Rasmussen, S.G.F., Choi, H.J., Rosenbaum, D.M., Kobilka, T.S., Thian, F.S., Edwards, P.C., Burghammer, M., Ratnala, V.R., Sanishvili, R., Fischetti, R.F., Schertler, G.F., Weis, W.I., Kobilka, B.K. | 3.4 | X-RAY DIFFRACTION | 0.270 | 0.217 | false | false | IGHV1 | IGKV14 | Kappa | null | null | null | null | null |
3q6f | F | E | 0 | null | null | null | null | IMMUNE SYSTEM | 12/31/10 | Crystal structure of Fab of human mAb 2909 specific for quaternary neutralizing epitope of HIV-1 gp120 | HOMO SAPIENS | homo sapiens | homo sapiens | null | Spurrier, B., Sampson, J., Totrov, M., Li, H., O'Neal, T., William, C., Robinson, J., Gorny, M.K., Zolla-Pazner, S., Kong, X.P. | 3.192 | X-RAY DIFFRACTION | 0.243 | 0.199 | false | false | IGHV3 | IGLV3 | Lambda | null | null | null | null | null |
6ii8 | H | L | 0 | C | protein | null | hemagglutinin | IMMUNE SYSTEM | 10/03/18 | Crystal structure of H7 hemagglutinin from A/Anhui/1/2013 in complex with a human neutralizing antibody L4B-18 | INFLUENZA A VIRUS; HOMO SAPIENS | homo sapiens | homo sapiens | influenza a virus | Jiang, H.H., Shi, Y., Qi, J., Gao, G.F. | 3.32 | X-RAY DIFFRACTION | 0.251 | 0.203 | false | true | IGHV3 | IGLV6 | Lambda | 0 | -8.74946 | SPR | null | TBD |
7n9a | A | null | 0 | E | protein | null | spike protein s1 | VIRAL PROTEIN/IMMUNE SYSTEM | 06/17/21 | Potent neutralizing nanobodies resist convergent circulating variants of SARS-CoV-2 by targeting novel and conserved epitopes-CovS RBD with NB21 | LAMA GLAMA; SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS 2 | lama glama | null | severe acute respiratory syndrome coronavirus2 | Sun, D., Zhang, C., Shi, Y. | 3.5 | ELECTRON MICROSCOPY | null | null | false | true | IGHV1 | null | null | null | null | null | null | null |
6wf0 | H | L | 0 | B | A | protein | protein | NA | NA | hemagglutinin | hemagglutinin | VIRAL PROTEIN/Immune System | 04/03/20 | Crystal Structure of Broadly Neutralizing Antibody 3I14 Bound to the Influenza A H3 Hemagglutinin | INFLUENZA A VIRUS; HOMO SAPIENS | homo sapiens | homo sapiens | influenza a virus | influenza a virus | Harshbarger, W.D., Lockbaum, G.J., Deming, D.T., Attatippaholkun, N., Schiffer, C.A., Marasco, W.A. | 3.46 | X-RAY DIFFRACTION | 0.282 | 0.231 | false | true | IGHV3 | IGLV1 | Lambda | null | null | null | null | null |
6rpj | D | null | 0 | C | protein | null | cytotoxic t-lymphocyte protein 4 | IMMUNE SYSTEM | 05/14/19 | A Non-blocking anti-CTLA-4 Nanobody complexed with CTLA-4 | HOMO SAPIENS; CAMELUS BACTRIANUS | camelus bactrianus | null | homo sapiens | Gao, H., Zhou, A., Zhang, F. | 3.25 | X-RAY DIFFRACTION | 0.262 | 0.249 | false | true | IGHV1 | null | null | null | null | null | null | null |
7jlk | H | L | 0 | null | null | null | null | IMMUNE SYSTEM | 07/29/20 | Crystal structure of glVRC01 Fab in complex with anti-idiotype iv1 scFv | MUS MUSCULUS; HOMO SAPIENS | mus musculus | mus musculus | null | Weidle, C., Pancera, M. | 1.99 | X-RAY DIFFRACTION | 0.235 | 0.179 | false | true | IGHV9 | IGKV6 | Kappa | null | null | null | null | null |
6o3a | B | A | 0 | E | protein | null | frizzled-7 | SIGNALING PROTEIN | 02/26/19 | Crystal structure of Frizzled 7 CRD in complex with F7.B Fab | HOMO SAPIENS | homo sapiens | homo sapiens | homo sapiens | Raman, S., Beilschmidt, M., Fransson, J., Julien, J.P. | 2.1 | X-RAY DIFFRACTION | 0.242 | 0.192 | false | true | IGHV3 | IGKV1 | Kappa | null | null | null | null | null |
7lyv | C | D | 0 | null | null | null | null | IMMUNE SYSTEM | 03/08/21 | Crystal structure of the HCMV pentamer-specific antibody 1-103 | HOMO SAPIENS | homo sapiens | homo sapiens | null | Wrapp, D., Jones, H.G., McLellan, J.S. | 1.9 | X-RAY DIFFRACTION | 0.217 | 0.191 | false | true | IGHV4 | IGKV1 | Kappa | null | null | null | null | null |
4jy6 | B | A | 0 | null | null | null | null | IMMUNE SYSTEM | 03/29/13 | Crystal structure of human Fab PGT123, a broadly reactive and potent HIV-1 neutralizing antibody | HOMO SAPIENS | homo sapiens | homo sapiens | null | Julien, J.-P., Diwanji, D.C., Burton, D.R., Wilson, I.A. | 2.5 | X-RAY DIFFRACTION | 0.265 | 0.207 | false | true | IGHV4 | unknown | unknown | null | null | null | null | null |
5xqy | null | H | 0 | null | null | null | null | IMMUNE SYSTEM | 06/07/17 | Structure of monomeric mutant of REI immunoglobulin light chain variable domain crystallized at pH 8 | HOMO SAPIENS | null | homo sapiens | null | Mine, S., Nakamura, T., Uegaki, K., Hamada, D. | 2.9 | X-RAY DIFFRACTION | 0.285 | 0.231 | false | true | null | IGKV1 | Kappa | null | null | null | null | null |
7zfe | W | null | 0 | A | protein | null | spike protein s1 | VIRAL PROTEIN | 04/01/22 | SARS-CoV-2 Omicron RBD in complex with Omi-32 Fab and nanobody C1 | LAMA GLAMA; SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS 2; HOMO SAPIENS | lama glama | null | severe acute respiratory syndrome coronavirus2 | Zhou, D., Huo, J., Ren, J., Stuart, D.I. | 3.25 | X-RAY DIFFRACTION | 0.293 | 0.237 | false | true | IGHV1 | null | null | null | null | null | null | null |
4qhk | I | J | 0 | null | null | null | null | IMMUNE SYSTEM | 05/28/14 | UCA (unbound) from CH103 Lineage | HOMO SAPIENS | homo sapiens | homo sapiens | null | Fera, D., Harrison, S.C. | 3.487 | X-RAY DIFFRACTION | 0.285 | 0.269 | false | true | IGHV4 | IGLV3 | Lambda | null | null | null | null | null |
7t3d | O | Q | 0 | G | protein | null | hemagglutinin ha2 chain | Viral Protein/IMMUNE SYSTEM | 12/07/21 | CryoEM map of anchor 222-1C06 Fab and lateral patch 2B05 Fab binding H1 HA | INFLUENZA A VIRUS (A/CALIFORNIA/04/2009(H1N1)); HOMO SAPIENS | homo sapiens | homo sapiens | influenza a virus (a/california/04/2009(h1n1)) | Han, J., Ward, A.B. | 3.2 | ELECTRON MICROSCOPY | null | null | false | true | IGHV3 | IGKV3 | Kappa | null | null | null | null | null |
5uk2 | G | g | 0 | A | protein | null | hemagglutinin ha1 | VIRAL PROTEIN/IMMUNE SYSTEM | 01/19/17 | CryoEM structure of an influenza virus receptor-binding site antibody-antigen interface - Class 4 | INFLUENZA A VIRUS; HOMO SAPIENS; INFLUENZA A VIRUS (A/SOLOMON ISLANDS/3/2006(H1N1)) | homo sapiens | null | influenza a virus (a/solomonislands/3/2006(h1n1)) | Liu, Y., Pan, J., Caradonna, T., Jenni, S., Raymond, D.D., Schmidt, A.G., Harrison, S.C., Grigorieff, N. | 4.8 | ELECTRON MICROSCOPY | null | null | true | true | unknown | unknown | unknown | null | null | null | null | null |
1g9e | A | null | 5 | null | null | null | null | IMMUNE SYSTEM | 11/23/00 | SOLUTION STRUCTURE AND RELAXATION MEASUREMENTS OF AN ANTIGEN-FREE HEAVY CHAIN VARIABLE DOMAIN (VHH) FROM LLAMA | LAMA GLAMA | lama glama | null | null | Renisio, J.-G., Perez, J., Czisch, M., Guenneugues, M., Bornet, O., Frenken, L., Cambillau, C., Darbon, H. | NOT | SOLUTION NMR | null | null | false | true | IGHV1 | null | null | null | null | null | null | null |
2x6m | A | null | 0 | B | peptide | null | alpha-synuclein peptide | IMMUNE SYSTEM | 02/18/10 | Structure of a single domain camelid antibody fragment in complex with a C-terminal peptide of alpha-synuclein | CAMELUS DROMEDARIUS; SYNTHETIC CONSTRUCT | camelus dromedarius | null | homo sapiens | DeGenst, E., Guilliams, T., Wellens, J., O'Day, E.M., Waudby, C.A., Meehan, S., Dumoulin, M., Hsu, S.-T.D., Cremades, N., Verschueren, K.H.G., Pardon, E., Wyns, L., Steyaert, J., Christodoulou, J., Dobson, C.M. | 1.62 | X-RAY DIFFRACTION | 0.203 | 0.156 | false | true | IGHV1 | null | null | null | null | null | null | null |
4poy | A | null | 0 | null | null | null | null | IMMUNE SYSTEM | 02/26/14 | Engineered Dual Specific VHH antibody | LAMA GLAMA | lama glama | null | null | Fanning, S.W., Walter, R., Horn, J.R. | 1.5 | X-RAY DIFFRACTION | 0.241 | 0.201 | false | true | IGHV1 | null | null | null | null | null | null | null |
7czy | H | K | 0 | A | protein | null | spike glycoprotein | VIRAL PROTEIN | 09/09/20 | S protein of SARS-CoV-2 in complex bound with P5A-2F11_2B | SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS 2; HOMO SAPIENS | homo sapiens | homo sapiens | severe acute respiratory syndrome coronavirus2 | Yan, R.H., Zhang, Y.Y., Li, Y.N., Zhou, Q. | 3.3 | ELECTRON MICROSCOPY | null | null | false | true | IGHV1 | IGKV4 | Kappa | null | null | null | null | null |
2vyr | G | null | 0 | C | protein | null | mdm4 protein | IMMUNE SYSTEM | 07/28/08 | Structure of human MDM4 N-terminal domain bound to a single domain antibody | HOMO SAPIENS | homo sapiens | null | homo sapiens | Yu, G.W., Vaysburd, M., Allen, M.D., Settanni, G., Fersht, A.R. | 2.0 | X-RAY DIFFRACTION | 0.248 | 0.207 | false | true | IGHV3 | null | null | 0 | -9.69 | ITC | 15 | 19084022 |
5vl3 | A | B | 0 | R | protein | null | b-cell receptor cd22 | IMMUNE SYSTEM | 04/24/17 | CD22 d1-d3 in complex with therapeutic Fab Epratuzumab | HOMO SAPIENS; MUS MUSCULUS | mus musculus, homo sapiens | mus musculus, homo sapiens | homo sapiens | Sicard, T., Ereno-Orbea, J., Julien, J.P. | 3.1 | X-RAY DIFFRACTION | 0.295 | 0.280 | false | true | IGHV1 | IGKV8 | Kappa | null | null | null | null | null |
2mmx | null | A | 2 | null | null | null | null | IMMUNE SYSTEM | 03/20/14 | NMR study of 6aJL2 | HOMO SAPIENS | null | homo sapiens | null | Amero, C., Maya-Martinez, R.C., Gil-Rodriguez, P.C. | NOT | SOLUTION NMR | null | null | false | true | null | IGLV6 | Lambda | null | null | null | null | null |
6zwk | D | null | 0 | J | peptide | null | histone h2ax | IMMUNE SYSTEM | 07/28/20 | Crystal structure of the phosphorylated C-terminal tail of histone H2AX in complex with a specific nanobody (C6 gammaXbody) | VICUGNA PACOS; SYNTHETIC CONSTRUCT | vicugna pacos | null | homo sapiens | McEwen, A.G., Moeglin, E., Desplancq, D., Weiss, E., Poterszman, A. | 1.55 | X-RAY DIFFRACTION | 0.184 | 0.149 | false | true | IGHV1 | null | null | null | null | null | null | null |
3rhw | F | N | 0 | B | protein | null | avermectin-sensitive glutamate-gated chloride channel gluclalpha | transport protein/immune system | 04/12/11 | C. elegans glutamate-gated chloride channel (GluCl) in complex with Fab and ivermectin | CAENORHABDITIS ELEGANS; MUS MUSCULUS | mus musculus | mus musculus | caenorhabditis elegans | Hibbs, R.E., Gouaux, E. | 3.26 | X-RAY DIFFRACTION | 0.270 | 0.239 | false | true | IGHV1 | IGLV1 | Lambda | null | null | null | null | null |
6iyn | A | null | 16 | null | null | null | null | AFLATOXIN B1-BINDING PROTEIN | 12/17/18 | Solution structure of camelid nanobody Nb26 against aflatoxin B1 | VICUGNA PACOS | vicugna pacos | null | null | Nie, Y., He, T., Zhu, J., Li, S.L., Hu, R., Yang, Y.H. | NOT | SOLUTION NMR | null | null | false | true | IGHV1 | null | null | null | null | null | null | null |
1f58 | H | L | 0 | P | peptide | null | protein (exterior membrane glycoprotein(gp120)) | Viral protein/Immune system | 10/21/98 | IGG1 FAB FRAGMENT (58.2) COMPLEX WITH 24-RESIDUE PEPTIDE (RESIDUES 308-333 OF HIV-1 GP120 (MN ISOLATE) WITH ALA TO AIB SUBSTITUTION AT POSITION 323 | MUS MUSCULUS; SYNTHETIC CONSTRUCT | mus musculus | mus musculus | null | Stanfield, R.L., Cabezas, E., Satterthwait, A.C., Stura, E.A., Profy, A.T., Wilson, I.A. | 2.0 | X-RAY DIFFRACTION | 0.256 | 0.196 | false | false | IGHV3 | IGKV3 | Kappa | null | null | null | null | null |
6pil | A | a | 0 | null | null | null | null | IMMUNE SYSTEM | 06/26/19 | Antibody scFv-M204 monomeric state | ORYCTOLAGUS CUNICULUS | oryctolagus cuniculus | null | null | Abskharon, R., Sawaya, M.R., Seidler, P.M., Cascio, D., Eisenberg, D.S. | 2.2 | X-RAY DIFFRACTION | 0.234 | 0.194 | true | true | unknown | unknown | unknown | null | null | null | null | null |
7r7n | H | L | 0 | E | protein | null | spike glycoprotein | VIRAL PROTEIN/IMMUNE SYSTEM | 06/25/21 | SARS-CoV-2 spike in complex with the S2D106 neutralizing antibody Fab fragment (local refinement of the RBD and S2D106) | HOMO SAPIENS; SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS 2 | homo sapiens | homo sapiens | severe acute respiratory syndrome coronavirus2 | Park, Y.J., Veesler, D., Seattle Structural Genomics Center for Infectious Disease (SSGCID) | 3.95 | ELECTRON MICROSCOPY | null | null | false | true | IGHV1 | IGKV1 | Kappa | null | null | null | null | null |
6vi4 | D | null | 0 | A | protein | null | kappa opioid receptor | MEMBRANE PROTEIN | 01/11/20 | Nanobody-Enabled Monitoring of Kappa Opioid Receptor States | HOMO SAPIENS; LAMA GLAMA | lama glama | null | homo sapiens | Che, T., Roth, B.L. | 3.3 | X-RAY DIFFRACTION | 0.271 | 0.242 | false | true | IGHV1 | null | null | null | null | null | null | null |
7q9g | H | L | 0 | A | protein | null | surface glycoprotein | Viral Protein/Immune System | 11/12/21 | COVOX-222 fab in complex with SARS-CoV-2 beta-Spike glycoprotein | SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS 2; HOMO SAPIENS | homo sapiens | homo sapiens | severe acute respiratory syndrome coronavirus2 | Duyvesteyn, H.M.E., Ren, J., Stuart, D.I. | 3.3 | ELECTRON MICROSCOPY | null | null | false | true | IGHV3 | IGKV3 | Kappa | null | null | null | null | null |
5nhr | A | B | 0 | D | protein | null | activin receptor type-2b | IMMUNE SYSTEM | 03/22/17 | CRYSTAL STRUCTURE OF THE Activin receptor type-2B LIGAND BINDING DOMAIN IN COMPLEX WITH BIMAGRUMAB FV, CUBIC CRYSTAL FORM | HOMO SAPIENS | homo sapiens | homo sapiens | homo sapiens | RONDEAU, J.-M. | 3.35 | X-RAY DIFFRACTION | 0.229 | 0.216 | false | true | IGHV1 | IGLV2 | Lambda | null | null | null | null | null |
1ivl | null | A | 0 | null | null | null | null | IMMUNOGLOBULIN | 05/04/94 | THE DE NOVO DESIGN OF AN ANTIBODY COMBINING SITE: CRYSTALLOGRAPHIC ANALYSIS OF THE VL DOMAIN CONFIRMS THE STRUCTURAL MODEL | SYNTHETIC CONSTRUCT | null | synthetic construct | null | Essen, L.-O., Skerra, A. | 2.17 | X-RAY DIFFRACTION | unknown | 0.175 | false | true | null | IGKV6D | Kappa | null | null | null | null | null |
5i8o | H | L | 0 | H | carbohydrate | FUC | polysaccharide | IMMUNE SYSTEM | 02/19/16 | HMM5 Fab in complex with disaccharide | HOMO SAPIENS | homo sapiens | homo sapiens | homo sapiens | Andersen, G.R., Tjerrild, L.M., Spillner, E. | 1.8 | X-RAY DIFFRACTION | 0.205 | 0.164 | false | true | IGHV1 | IGKV1 | Kappa | null | null | null | null | null |
5boz | J | null | 0 | D | protein | null | ricin | Hydrolase/Immune system | 05/27/15 | Ricin A chain bound to camelid nanobody (VHH9)(E1) | RICINUS COMMUNIS; LAMA GLAMA | lama glama | null | ricinus communis | Rudolph, M.J., Mantis, N. | 3.1 | X-RAY DIFFRACTION | 0.277 | 0.215 | false | true | IGHV1 | null | null | 0 | -12.489521 | SPR | null | TBD |
6cm3 | M | L | 0 | F | protein | null | envelope glycoprotein gp160 | VIRAL PROTEIN | 03/02/18 | BG505 SOSIP in complex with sCD4, 17b, 8ANC195 | HUMAN IMMUNODEFICIENCY VIRUS 1; HOMO SAPIENS | homo sapiens | homo sapiens | human immunodeficiency virus 1 | Wang, H., Bjorkman, P.J. | 3.54 | ELECTRON MICROSCOPY | null | null | false | true | IGHV1 | IGKV3 | Kappa | null | null | null | null | null |
3dvi | null | A | 0 | null | null | null | null | PROTEIN FIBRIL | 07/18/08 | Crystal structure of kappa 1 amyloidogenic light chain variable domain | HOMO SAPIENS | null | homo sapiens | null | Thompson, J.R., Randles, E.G., Ramirez-Alvarado, M. | 1.53 | X-RAY DIFFRACTION | 0.251 | 0.189 | false | true | null | IGKV1 | Kappa | null | null | null | null | null |
5w3p | H | L | 0 | P | peptide | null | amyloid beta a4 protein | IMMUNE SYSTEM | 06/08/17 | ANTIBODY C706 IN COMPLEX WTH BETA-AMYLOID PEPTIDE 1-16 | MUS MUSCULUS; SYNTHETIC CONSTRUCT | mus musculus | mus musculus | homo sapiens | Teplyakov, A., Obmolova, G., Gilliland, G.L. | 1.92 | X-RAY DIFFRACTION | 0.236 | 0.198 | false | true | IGHV1 | IGKV4 | Kappa | null | null | null | null | null |
2aep | H | L | 0 | A | protein | null | neuraminidase | IMMUNE SYSTEM | 07/23/05 | An epidemiologically significant epitope of a 1998 influenza virus neuraminidase forms a highly hydrated interface in the NA-antibody complex. | MUS MUSCULUS; INFLUENZA A VIRUS | mus musculus | mus musculus | influenza a virus | Venkatramani, L., Bochkareva, E., Lee, J.T., Gulati, U., Laver, W.G., Bochkarev, A., Air, G.M. | 2.1 | X-RAY DIFFRACTION | 0.224 | 0.188 | false | false | IGHV7 | IGKV6 | Kappa | 0 | -10.8 | Other | null | 16384583 |
6bpc | B | C | 0 | A | protein | null | reticulocyte binding protein 2, putative | CELL INVASION | 11/22/17 | Plasmodium vivax reticulocyte binding protein 2b (PvRBP2b) bound to monoclonal antibody 4F7 | PLASMODIUM VIVAX (STRAIN SALVADOR I); MUS MUSCULUS | mus musculus | mus musculus | plasmodium vivax (strain salvador i) | Gruszczyk, J., Chan, L.J., Tham, W.H. | 2.66 | X-RAY DIFFRACTION | 0.215 | 0.197 | false | false | IGHV5 | IGKV6 | Kappa | null | null | null | null | null |
7e5r | P | Q | 0 | A | protein | null | spike glycoprotein | VIRAL PROTEIN/IMMUNE SYSTEM | 02/20/21 | SARS-CoV-2 S trimer with three-antibody cocktail complex | HOMO SAPIENS; SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS 2 | homo sapiens | homo sapiens | severe acute respiratory syndrome coronavirus2 | Sun, Y., Wang, L., Wang, N., Feng, R., Wang, X. | 3.6 | ELECTRON MICROSCOPY | null | null | false | true | IGHV1 | IGLV1 | Lambda | null | null | null | null | null |
7wbj | N | null | 0 | A | B | protein | protein | NA | NA | guanine nucleotide-binding protein g(s) subunit alphaisoforms short | guanine nucleotide-binding protein g(i)/g(s)/g(t) subunitbeta-1 | STRUCTURAL PROTEIN | 12/16/21 | Cryo-EM structure of N-terminal modified human vasoactive intestinal polypeptide receptor 2 (VIP2R) in complex with PACAP27 and Gs | HOMO SAPIENS; BOS TAURUS; RATTUS NORVEGICUS; SYNTHETIC CONSTRUCT; SYNTHETIC CONSTRUCT | synthetic construct | null | bos taurus | rattus norvegicus | Xu, Y.N., Feng, W.B., Zhou, Q.T., Liang, A.Y., Li, J., Dai, A.T., Zhao, F.H., Yan, J.H., Chen, C.W., Li, H., Zhao, L.H., Xia, T., Jiang, Y., Xu, H.E., Yang, D.H., Wang, M.W. | 3.42 | ELECTRON MICROSCOPY | null | null | false | true | IGHV3 | null | null | null | null | null | null | null |
6v6w | D | E | 0 | T | protein | null | envelope glycoprotein gp41 | VIRAL PROTEIN/IMMUNE SYSTEM | 12/06/19 | Crystal structure of antibody 438-B11 DSS mutant (Cys98A-100aA) in complex with an uncleaved prefusion optimized (UFO) soluble BG505 trimer and Fab 35O22 | HUMAN IMMUNODEFICIENCY VIRUS 1 | human immunodeficiency virus 1 | human immunodeficiency virus 1 | human immunodeficiency virus 1 | Kumar, S., Wilson, I.A. | 6.5 | X-RAY DIFFRACTION | 0.355 | 0.309 | false | true | unknown | unknown | unknown | null | null | null | null | null |
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