study_id stringlengths 12 12 | study_name stringlengths 2 506 ⌀ | study_abstract stringlengths 1 7.48k ⌀ | lineage stringclasses 298
values |
|---|---|---|---|
MGYS00006667 | EMG produced TPA metagenomics assembly of PRJNA434147 data set (Delta Smelt gut content study). | The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set PRJNA434147, and was assembled with metaSPAdes v3.15.3. This project includes samples from the following biomes: root:Host-associated:Fish:Digestive system. | root:Host-associated:Fish:Digestive system |
MGYS00006664 | EMG produced TPA metagenomics assembly of PRJEB30661 data set (TO INVESTIGATE THE MICROBIAL COMMUNITY ASSOCIATED WITH FISH GUT). | The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set PRJEB30661, and was assembled with metaSPAdes v3.15.3. This project includes samples from the following biomes: root:Host-associated:Fish:Digestive system. | root:Host-associated:Fish:Digestive system |
MGYS00006665 | EMG produced TPA metagenomics assembly of PRJNA433811 data set (shotgun metagenome sequencing salmo salar gut microbiota). | The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set PRJNA433811, and was assembled with metaSPAdes v3.15.3. This project includes samples from the following biomes: root:Host-associated:Fish:Digestive system. | root:Host-associated:Fish:Digestive system |
MGYS00006663 | EMG produced TPA metagenomics assembly of PRJNA506751 data set (Puffer fish gut Metagenome). | The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set PRJNA506751, and was assembled with metaSPAdes v3.15.3. This project includes samples from the following biomes: root:Host-associated:Fish:Digestive system. | root:Host-associated:Fish:Digestive system |
MGYS00002675 | EMG produced TPA metagenomics assembly of the Oral microbiome Metagenome (human oral metagenome) data set. | The human oral metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set: PRJNA255922. This project includes samples from the following biomes: Host-associated, Human, Digestive system, Oral. | root:Host-associated:Human:Digestive system:Oral |
MGYS00006028 | Bio-GO-SHIP: Global marine 'omics studies of repeat hydrography transects | The Global Ocean Shipboard Hydrographic Investigations Program (GO-SHIP) is a ship-based global survey of ocean hydrographic sections, which are repeatedly measured on a decadal time scale. The program covers a suite of physical (light, heat, currents, water column structure, etc.) and chemical (nutrients, oxygen, diss... | root:Environmental:Aquatic:Marine |
MGYS00005851 | metabarcoding of eDNAbyss sediment samples | Sediments were collected using multicore sampler, or simple cores when a submarine or a remote operated vehicle (ROV) were present. The cores were collected and sliced according to sediment depth and using a standardized scheme. Slices were preserved and treated individually. When hard substrate was collected, the gear... | root:Environmental:Aquatic:Marine:Sediment |
MGYS00006281 | Metagenomes from an Argentine salt flat | Analysis of assembled metagenomes from an Argentine salt flat | root:Environmental:Terrestrial:Soil |
MGYS00006069 | EMG produced TPA metagenomics assembly of PRJEB11419 data set (American Gut Project). | The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set PRJEB11419, and was assembled with metaSPAdes v3.14.1. This project includes samples from the following biomes: root:Host-associated:Human. | root:Host-associated:Human |
MGYS00006006 | Extensive microbial novelty in the Hadza and Nepali gut microbiome reveals how lifestyle impacts composition and function | The gut microbiome has been identified as a key to immune and metabolic health, especially in industrialized populations. Non-industrialized individuals harbor more diverse microbiomes and distinct bacterial lineages, but systemic under-sampling has hindered insight into the extent and functional consequences of these ... | root:Host-associated:Human:Digestive system |
MGYS00002061 | EMG produced TPA metagenomics assembly of the Increased intestinal microbial diversity following fecal microbiota transplant for active Crohn''s disease (human gut metagenome) data set | The human gut metagenome Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set PRJNA321058. This project includes samples from the following biomes : Human gut. | root:Host-associated:Human:Digestive system:Large intestine:Fecal |
MGYS00000633 | Microbial composition of samples from infant gut | The microbial composition of the gut likely contributes to a wide-range of health and disease states including intestinal inflammation, atopic disease, and possibly diseases of adulthood, such as heart disease and obesity. The early establishment of the gut microflora is suspected to have a particularly profound impact... | root:Host-associated:Human:Digestive system:Large intestine |
MGYS00002529 | Dark ocean microbial diversity | The goal of the study is to assess the diversity of bacteria and archaea in the water masses of the open ocean. | root:Environmental:Aquatic:Marine:Oceanic |
MGYS00001036 | 16S rRNA gene sequences from temperate soils Targeted Locus (Loci) | Both climate and pH are key in determining soil archaeal community structure and diversity | root:Environmental:Terrestrial:Soil |
MGYS00004597 | Peru margin subsurface | Investigation of the microbial diversity in subsurface sediments of Peru margin | root:Environmental:Aquatic:Marine:Sediment |
MGYS00002238 | Oral microbial changes in ASD children | This project depicts the characteristics of oral microbiome in autistic children. | root:Host-associated:Human:Digestive system:Oral |
MGYS00000716 | structural analysis of microbial community for feild soil and compost made from coffee lees | Our final end is to change organic agriculture to matter production system based on scientific basis by stationary measurement of soil microbial community.This year,We analyze bacteria and fungi community at feild soil fertilized by compost made from coffee lees.We also analyze compost made from coffee lees. | root:Environmental:Terrestrial:Soil |
MGYS00001656 | Universal metabarcoding of pico- mesoplankton reveals seasonal dynamics and a bacterial bloom | Most studies of biodiversity focus on either macroscopic or microbial communities, with little or no simultaneous study of eukaryotes and prokaryotes. We tested whether a universal metabarcoding approach could be used to study the total diversity and temporal dynamics of aquatic pico- to mesoplankton communities in a s... | root:Environmental:Aquatic:Freshwater:Lake |
MGYS00002810 | peptide incubation in GOM C6 seawater bacteria Metagenome | Study bacteria community changes in the peptide decomposition in different seawater | root:Environmental:Aquatic:Marine |
MGYS00002567 | Biogeography of pelagic bacterioplankton across an antagonistic temperature-salinity gradient in the Red Sea | The Red Sea is a unique marine ecosystem with contrasting gradients of temperature and salinity along its north to south axis. It is an extremely oligotrophic environment that is characterized by perpetual year-round water column stratification, high annual solar irradiation, and negligible riverine and precipitation i... | root:Environmental:Aquatic:Marine:Pelagic |
MGYS00000710 | Alwernia Metagenome | Pyrosequencing of V3-V4 16S rRNA gene fragments amplified from metagenomic DNA isolated from heavy metals-contaminated soils collected near chromium green-producing facility in Alwernia, Poland. Two samples of soils from Alwernia, Poland, collected at the vicinity of chromium green-producing factory. | root:Environmental:Terrestrial:Soil |
MGYS00003004 | Submarine Ligurian Canyons Water Prokaryotic and Protist Communities | Planktonic prokaryote communities in a submarine canyon system in the Ligurian Sea (NW Mediterranean) | root:Environmental:Aquatic:Marine |
MGYS00004596 | Marine sediment in Arctic Raw sequence reads | This study assessed the diversity and distribution of fungal communities associated with marine sediments in Arctic. | root:Environmental:Aquatic:Marine:Sediment |
MGYS00002552 | North Pacific Subtropical Gyre Microbial Community | 16S amplicon libraries were collected as a portion of the Seasonal and decadal changes in temperature drive Prochlorococcus ecotype distribution patterns, also known as Prochlorococcus of Warming Ocean Waters (POWOW) Cruise series. The samples were collected in January 2013 (KM1301) and July 2013 (KM1312) in the Easter... | root:Environmental:Aquatic:Marine:Oceanic |
MGYS00003089 | Marine metagenome ICM_JRV | Microeukaryote diversity in the Gulf of Maine: Under-explored microbial diversity in a well-studied coastal marine ecosystem. | root:Environmental:Aquatic:Marine:Coastal |
MGYS00003115 | Diversity and structure of benthic bacterial community from South-Eastern Pacific Ocean, Targeted Locus (Loci) | Assessing diversity and structure of sediment microbial communities under the influence of the oxygen minimum zone of an Eastern Boundary Current ecosystem: the Humboldt marine ecosystem | root:Environmental:Aquatic:Marine:Oceanic:Benthic |
MGYS00006562 | EMG produced TPA metagenomics assembly of PRJEB54673 data set (Paediatric Oral Microbiome). | The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set PRJEB54673, and was assembled with metaspades v3.15.3. This project includes samples from the following biomes: root:Host-associated:Human:Digestive system:Oral. | root:Host-associated:Human:Digestive system:Oral |
MGYS00006660 | Picoplankton 16S rRNA gene sequences (DNA and RNA) from Vertical Profiles (surface to 4000m depth) sampled during the Malaspina 2010 circumglobal expedition | The study here includes 182 samples (91 DNA and 91 RNA) of the 16S from the Malaspina-2010 expedition. The samples were sequenced using Illumina MiSeq 2x250bp. | root:Environmental:Aquatic:Marine |
MGYS00006659 | Amplicon 18S rRNA Illumina TAGs from Malaspina Bathypelagic samples | Bathypelagic samples collected during the global
circumnavigation Expedition Malaspina 2010 were generated by
amplifying the 18S rRNA gene
using primers XXXXX and XXXX. Sequencing was performed in an Illumina
MiSeq platform (iTAGs) using 2x250 bp paired-end approach at
Genoscope. The data generated has been used mainly... | root:Environmental:Aquatic:Marine |
MGYS00006658 | Amplicon 16S rRNA Illumina TAGs from Malaspina Bathypelagic samples | Bathypelagic samples collected during the global
circumnavigation Expedition Malaspina 2010 were generated by
amplifying the V4 and V5 hypervariable regions of the 16S rRNA gene
using primers 515F-Y (5’-GTGYCAGCMGCCGCGGTAA-3’) and 926R
(5′-CCGYCAATTYMTTTRAGTTT-3′). Sequencing was performed in an Illumina
MiSeq platform... | root:Environmental:Aquatic:Marine |
MGYS00002392 | Amplicon sequencing of Tara Oceans DNA samples corresponding to size fractions for protists. | Analysis of 18S DNA in Tara Oceans Protists size fractions through amplicon sequencing: Seawater was filtered from different depths to retain small and large cell sizes. The DNA was extracted and amplified by PCR. | root:Environmental:Aquatic:Marine |
MGYS00004011 | Microbial communities of methane seeps in shallow, porous sands off Elba | The methane cold seeps near Pomonte (Elba) are unique ecosystems situated in very shallow and porous coastal sands. We investigated the influence on hydrodynamics on microbial community structure and function. Understanding these ecosystems is important to estimate their role in carbon cycling and their emission of met... | root:Environmental:Aquatic:Marine:Sediment |
MGYS00000988 | Global fungal diversity | This is a global dataset of unprecedented scope to disentangle the relative roles of climatic, edaphic, floristic, and spatial variables governing global-scale patterns of soil fungal diversity. We also address key macro-ecological phenomena such as latitudinal gradients of diversity and Rapoport’s rule (expansion of s... | root:Environmental:Terrestrial:Soil |
MGYS00001509 | Diversity of Pico- to Mesoplankton Along the 2000 km Salinity Gradient of the Baltic Sea | Microscopic plankton form the productive base of both marine and freshwater ecosystems and are key drivers of global biogeochemical cycles of carbon and nutrients. Plankton diversity is immense with representations from all major phyla within the three domains of life. So far, plankton monitoring has mainly been based ... | root:Environmental:Aquatic:Marine |
MGYS00004228 | marine sediment metagenome Genome sequencing and assembly | To share species we detected in the South China Sea | root:Environmental:Aquatic:Marine:Sediment |
MGYS00003016 | Distinctive community structure and high diversity in particle-associated prokaryotes in tropical and subtropical Pacific Ocean surface seawater | The specific aim of this project was to determine bacterial and archaeal community structures in the PA assemblage in comparison to the free-living (FL) assemblage in the tropical and subtropical Pacific Ocean. | root:Environmental:Aquatic:Marine:Oceanic |
MGYS00003989 | Marine bacterial, archaeal and eukaryotic diversity and community structure on the continental shelf of the Western Antarctic Peninsula | The classic view of polar ocean foodwebs emphasizes large predators sustained by energy and materials flow through short, efficient diatom-krill-predator food chains. Bacterial activity is generally low in cold polar waters compared to lower latitudes. This view appears to be changing, with new studies of microbial foo... | root:Environmental:Aquatic:Marine |
MGYS00004213 | Abalone seed nursing ecosystem Metagenome | In this study, using abalone seed nursing pond as a model system, we separately collected the time-series samples of three | root:Environmental:Aquatic:Marine |
MGYS00001536 | Habitat diversity and ecosystem multifunctionality - the importance of direct and indirect effects | Ecosystems worldwide are facing habitat homogenization due to human activities. While it is commonly proposed that such homogenization can have negative repercussions for ecosystem functioning, this remains to be explicitly studied. Here, we expand on the framework for the functional consequences of biodiversity loss, ... | root:Environmental:Aquatic:Marine:Coastal:Sediment |
MGYS00000818 | Hydrocarbon polluted soil Targeted Locus (Loci) | The aim of the study was to determine the microbial diversity in soil from a landfarming site amended with hydrocarbon contaminants. To determine the microbial diversity amplicon pyrosequencing was used of different regions of the 16S rRNA gene. | root:Environmental:Terrestrial:Soil |
MGYS00004112 | Marine metagenome ICM_CNE | Temporal Dynamics of Coastal Bacterioplankton | root:Environmental:Aquatic:Marine |
MGYS00001476 | Comparison of limnic and marine particle-associated microbial communities | Marine and limnic particles are hotspots of organic matter mineralization significantly affecting biogeochemical element cycling. Fluorescence in-situ hybridization with rRNA-targeted probes and tag pyrosequencing of 16S rRNA genes were combined to investigate bacterial diversity and community composition on limnic and... | root:Environmental:Aquatic:Marine |
MGYS00002546 | Pelagic Gulf of Mexico Targeted loci environmental | Methane and microbial dynamics in the Gulf of Mexico water column | root:Environmental:Aquatic:Marine:Pelagic |
MGYS00002584 | Marine Sediment from the Berkeley Bay Targeted Locus (Loci) | Community analysis (16S) of a marine samples enriched with perchlorate | root:Environmental:Aquatic:Marine:Sediment |
MGYS00001658 | Vertical organization of freshwater sediment microbial communities: implications for microbial activities and burial processes | Microbial activity in lake sediments plays a key role in the cycling of nutrients and organic matter that continuously sink from water columns. As organic matter accumulates at the sediment surface, upper sediment layers become buried, resulting in a decrease in microbial activity and cell turnover rate with increasing... | root:Environmental:Aquatic:Freshwater:Lake |
MGYS00002775 | Amundsen Gulf Overwintering Eukaryote Community | Year-long time series of eukaryote community in Amundsen Gulf, Arctic Ocean | root:Environmental:Aquatic:Marine |
MGYS00004496 | Enrichment of abundant sedimentary Bathyarchaeota demonstrating organoautotrophic metabolic capabilities | metabolic capabilities of Bathyarchaeota | root:Environmental:Aquatic:Marine |
MGYS00004176 | Evaluation of filtration and DNA extraction methods for environmental DNA biodiversity assessments across multiple trophic levels. | Methods evaluation for sample collection and nucleic acid extraction from multiple trophic levels simultaneously (i.e. bacteria, phytoplankton, zooplankton, vertebrates). Specifically, filter types and DNA extraction kits were evaluated for producing Illumina MiSeq reads for 12S, 16S and 18S amplicons from water sample... | root:Environmental:Aquatic:Marine |
MGYS00003006 | A study on microbial functional groups producing a climate related gas in the ocean | Dimethylsulfoniopropionate (DMSP), the precursor of dimethyl sulfide (DMS), is mainly produced by marine phytoplankton, and is one of the most important sulfur and carbon sources for marine bacteria. To reveal the abundance and distribution of bacterial DMSP-degrading genes and the corresponding bacterial communities i... | root:Environmental:Aquatic:Marine:Oceanic |
MGYS00004160 | uncultured bacterium Targeted Locus (Loci) | The bacterial community at 2,000-m depth was studied over one-year survey in 2011 at the ANTARES site (Northwestern Mediterranean Sea). The most active member were analysed in October and May through ribosomal diversity. | root:Environmental:Aquatic:Marine |
MGYS00001224 | TRIF signalling drives homeostatic intestinal epithelial antimicrobial peptide expression | Recent results indicate a significant contribution of innate immune signalling to maintain mucosal homeostasis but the precise underlying signal transduction pathways are ill-defined. By comparative analysis of intestinal epithelial cells isolated from conventionally raised and germ-free mice as well as animals deficie... | root:Host-associated:Mammals:Digestive system:Large intestine |
MGYS00002510 | Hatteras return: Oligotrich and choreotrich ciliates diversity at small scales | Hatteras return: diversity and community composition of Oligotrich and choreotrich ciliates at small scales (1-3 km) off the New England coast | root:Environmental:Aquatic:Marine |
MGYS00004565 | Coral metagenome ICM_CCB | Exploring the microbial diversity and testing co-evolutionary hypotheses in Caribbean coral species using a 454-tag sequencing approach. | root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef |
MGYS00005716 | Metabarcoding of eDNAbyss water samples | Water from different depths was prefiltered in situ using Salsa pump or collected in CTD bottled before being filtered onboard to retain small cell sizes or nucleic acids (DNA/RNA). Nucleic acids were extracted from filters and submitted to a PCR-ligation protocols using 6 sets of primers pairs targeting metazoans (2 p... | root:Environmental:Aquatic:Marine |
MGYS00004038 | Uncultured Microbial Consortia in Industrialized Sites on Egypt''s Red Sea Coast Targeted loci environmental | Egypt''s Red Sea Coast: Phylogenetic Analysis of Uncultured Microbial Consortia in Industrialized Sites | root:Environmental:Aquatic:Marine:Coastal:Sediment |
MGYS00004190 | Oxic sediment - Microbial Metagenome | SSU 16S pyrosequencing project of the microbial metagenome of an oxic deep-sea sediment from the Eastern Mediterranean. | root:Environmental:Aquatic:Marine:Sediment |
MGYS00004320 | Sediment bacterial 16S in Hachiro polder. | Sediment bacterial 16S ribosomal RNA gene from surface to depth 30 m at hot spots of high concentration phosphate water springs in Hachiro polder. | root:Environmental:Aquatic:Marine:Sediment |
MGYS00005115 | Microbes in drinking water and biofilms (18S rDNA amplicon study) | 18S rDNA amplicon study of bulk water and shower hose biofilm samples. Cold water samples were collected from the water outlet of a drinking water treatment plant and from the water inlet of two neighboring buildings, warm water samples (ca 37 degrees C) were taken from showers within the two buildings: one building wi... | root:Environmental:Aquatic:Freshwater |
MGYS00002605 | Mariana and Kermadec Trench sediment 16S rRNA gene sequencing | This project studies the microbial communities within the Mariana and Kermadec trenches as a function of trench, sediment, and water depth using 16S rRNA gene sequencing. | root:Environmental:Aquatic:Marine:Sediment |
MGYS00003015 | Protists tag sequencing of 18S rRNA HV 9 | First comprehensive description of protist community diversity in meso- bathypelagic regions of the Ross Sea (Antarctica) | root:Environmental:Aquatic:Marine |
MGYS00003118 | Diversity and abundance of Bathyarchaeota (MCG) in South China Sea sediments and the implication of its ecological roles | understand the niche separation and adaptation of different bathyarchaeotal subgroups. | root:Environmental:Aquatic:Marine:Sediment |
MGYS00002818 | Seawater Targeted Locus (Loci) | We applied culture-independent, high throughput pyrosequencing to characterize the microbial communities associated with coastal seawater adjacent to populated Broward County, FL. These waters flow over adjacent coral reefs, which help compose the Florida reef tract, and also close to recreational beaches. In partnersh... | root:Environmental:Aquatic:Marine:Coastal |
MGYS00001560 | THERMOPHILIC HYDROGEN PRODUCTION IN ACIDOGENIC PACKED BED REACTOR (APBR) FED WITH SUGARCANE VINASSE: PERFORMANCE DURING LONG-TERM OPERATION | This study aimed to evaluate the long-term operation of an up-flow anaerobic packed bed reactor (APBR) filled with low-density of polyethylene (LDP) and applied to thermophilic hydrogen production using sugarcane vinasse as substrate. The APBR was operated at organic loading rate (OLR) of 84.2 kg-COD.m-3.d-1, value det... | root:Engineered:Bioreactor:Continuous culture |
MGYS00002702 | Metagenomic sequence from soil bacteria | This data contains metagenomic 16S rDNA sequence of soil bacteria. 16S rDNA sequence was amplified according to illumina protocol. The aim of this project is to analyze bacterial flora. | root:Environmental:Terrestrial:Soil |
MGYS00004050 | Prince Edward Island marine metgenome Raw sequence reads | Marine and terrestrial ecosystems of the Prince Edward islands (PEIs) are reciprocally connected and any changes in the community composition of one ecosystem will directly influence the other. In the present study, we investigated the pelagic marine microbial community structure (Bacteria, Phytoplankton and Archaea) a... | root:Environmental:Aquatic:Marine:Pelagic |
MGYS00002122 | PETROMAKS E#12 | The aim of the study was to asses biodegradation efficiency of dispersed oil of two Norwegian seawater sources. One source of seawater used in the study was local (Trondheimsfjord), while the other source was Svalbard seawater (Van Mijenfjord). The biodegradation experiment was conducted at 0-2C over the period of 64 d... | root:Environmental:Aquatic:Marine:Intertidal zone:Oil-contaminated |
MGYS00004276 | Environmental Foraminifera Raw sequence reads | Paleotsunami deposits are primary source of information on past big tsunami events and thereby are critical for earthquake and tsunami hazard assessment. They usually form sandy layers preserved in coastal sediments that may contain indicators of marine origin such as foraminifera microfossils and the geochemical signa... | root:Environmental:Aquatic:Marine:Coastal:Sediment |
MGYS00002583 | Microbial community in marine sediments | 16S rRNA amplicon sequencing on the Eastern South Pacific Ocean sediments | root:Environmental:Aquatic:Marine:Sediment |
MGYS00004129 | Microbial diversity in shallow water hydrothermal sediments of Gueishan Island, Taiwan | To better understand the benthic ecosystem near vents off Gueishan Island, we examined the microbial communities across the three domains of life in sediments collected at different distances from the vent area using small-subunit ribosomal RNA pyrosequencing. | root:Environmental:Aquatic:Marine:Sediment |
MGYS00004594 | Arctic water Metagenome | Diversity and distribution of aquatic fungal communities in the Ny-Ålesund Region, Svalbard, High Arctic | root:Environmental:Aquatic:Marine |
MGYS00003086 | Marine metagenome ICM_VAG | Community Structure Of Benthic Bacteria In Upwelling Ecosystem. | root:Environmental:Aquatic:Marine:Oceanic:Benthic |
MGYS00005267 | characterizing the gut communitties of twins discordant for obesity in gnotobiotic mice | International efforts to characterize the human microbiome in health and disease are producing massive amounts of data about organismal and gene content in our body habitat -associated microbial communities. A challenge is to complement these efforts with a preclinical research pipeline that tests the degree to which a... | root:Host-associated:Mammals:Digestive system:Fecal |
MGYS00006651 | EMG produced TPA metagenomics assembly of PRJEB52139 data set (HoloFood Chicken Caecum Metatranscriptome). | The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set PRJEB52139, and was assembled with metaspades v3.15.3. This project includes samples from the following biomes: root:Host-associated:Birds:Digestive system:Digestive tube:Cecum. | root:Host-associated:Birds:Digestive system:Ceca |
MGYS00005155 | Bacerial and archaeal diversity in Central Park | Soil biota play key roles in the functioning of terrestrial ecosystems, however, compared to our knowledge of aboveground plant and animal diversity, the biodiversity found in soils remains largely uncharacterized. Here we present an assessment of soil biodiversity and biogeographical patterns across Central Park in Ne... | root:Environmental:Terrestrial:Soil |
MGYS00005045 | Exploring Fronts With Multiple Robots – Schmidt Ocean Institute Cruise to the Pacific Ocean in 2018 | Samples were obtained during the Schmidt Ocean Institute cruise "Exploring Fronts With Mutiple Robots" to the Pacific Ocean in 2018 (https://schmidtocean.org/cruise/exploring_fronts_with_multiple_aerial-surface-underwater-vehicles/). Water samples for microplankton analysis were collected using a multi water sampler (r... | root:Environmental:Aquatic:Marine:Oceanic |
MGYS00005318 | Coral-associated bacteria demonstrate phylosymbiosis and cophylogeny | Scleractinian corals’ microbial symbionts influence host health, yet how these coral microbiomes assembled over evolution is not well understood. We survey bacterial and archaeal communities in phylogenetically diverse Australian corals representing more than 425 million years of diversification. We show that corals ex... | root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef |
MGYS00005154 | Human gut microbiome viewed across age and geography | Gut microbial communities represent one source of human genetic and metabolic diversity. To examine how gut microbiomes differ among human populations, here we characterize bacterial species in fecal samples from 531 individuals, plus the gene content of 110 of them. The cohort encompassed healthy children and adults f... | root:Host-associated:Human:Digestive system:Large intestine |
MGYS00005092 | Characterization of bacterial communities in soil under no-tillage practices with contrasting fertilization strategies | Long term experiment in Argentina. | root:Environmental:Terrestrial:Soil:Agricultural |
MGYS00000889 | 16S rRNA gene-based analysis of soil prokaryotic communities inhabiting fields of the Mezquital Valley, Mexico | Central objective of this study is to analyze the diversity and composition of prokaryotic communities present in fields of the Mezquital Valley, Mexico. | root:Environmental:Terrestrial:Soil:Agricultural |
MGYS00000880 | Natural saline soil, Sicily (Italy) Targeted Locus (Loci) | 16S rRNA analysis to inspect distribution of different bacterial groups as a function of spatial gradients of soil salinity and pH | root:Environmental:Terrestrial:Soil |
MGYS00002838 | Northern Gulf of Mexico Hypoxia can Alter Sediment Communities of Nitrifying Archaea | The sediments were obtained from station Z02 located at the 20 m isobath south of Terrebonne Bay in the northern Gulf of Mexico (latitude 28.875oN; longitude 90.428oW). The cores were collected in April and September 2006. | root:Environmental:Aquatic:Marine:Sediment |
MGYS00000814 | Forest Soil Metagenome - Eucalyptus urograndis and Acacia mangium | Forest soil under three different compositions: 1 - Eucalyptus urograndis monoculture 2 - Acacia mangium monoculture 3 - Mixed plantation | root:Environmental:Terrestrial:Soil |
MGYS00004215 | 22V-SMAR-TVG10 Targeted Locus (Loci) | Bacterial Diversity of Deep-sea Environment | root:Environmental:Aquatic:Marine:Sediment |
MGYS00004006 | Ocean Targeted Locus (Loci) | The cyanobacteria Prochlorococcus and Synechococcus are important marine primary producers. We explored their distributions and co-variance along a physico-chemical gradient from coastal to open ocean waters in the Northeastern Pacific Ocean. Based on 16S rRNA gene sequencing we identified two new clades of Synechococc... | root:Environmental:Aquatic:Marine |
MGYS00006551 | EMG produced TPA metagenomics assembly of PRJEB62473 data set (The INTEGRATE project). | The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set PRJEB62473, and was assembled with metaspades v3.15.3. This project includes samples from the following biomes: root:Host-associated:Human:Digestive system:Large intestine:Fecal. | root:Host-associated:Human:Digestive system:Large intestine:Fecal |
MGYS00002649 | ADDOMEx Tier 3 Experiments: Mesocosm Si with Gulf of Mexico coastal waters | Here we describe microbial community dynamics in the Mesocosm-Si experiment. Using 16S rRNA gene sequencing of filtered water samples collected every 24 hours from the mesocosm treatments, we characterized community membership and structure to determine how the mesocosm communities responded to a passively dosed (via s... | root:Environmental:Aquatic:Marine:Intertidal zone:Oil-contaminated |
MGYS00000938 | Complex Heteropolysaccharide Enriched Soils Targeted Locus (Loci) | Stable-isotope-probing of two soils using two complex heteropolysaccharides as a substrate. | root:Environmental:Terrestrial:Soil |
MGYS00000879 | Otumba arable soil Metagenome | Soil microbial biomass has been determined since the mid 1970’s by the chloroform fumigation incubation technique as proposed by Jenkinson and Powlson (1976). The microbial biomass C can be determined by subtracting the CO2 emitted from an unfumigated soil (mineralization of soil organic matter) from that emitted from ... | root:Environmental:Terrestrial:Soil:Agricultural |
MGYS00001010 | Haerbin black soil Genome sequencing | Black soil different fertilizer | root:Environmental:Terrestrial:Soil |
MGYS00003931 | Plasma soil pretreatment trail | Plasma is the fourth state of matter and it can be generated by coupling sufficient quantities of energy to a gas to induce ionization. Plasma treatment is known for its antimicrobial properties by generating agents such as reactive oxygen and nitrogen species to kill and reduce proliferation of various microorganisms.... | root:Environmental:Terrestrial:Soil:Agricultural |
MGYS00002522 | Standard filtration practices significantly distort planktonic microbial diversity estimates | Filtration is the standard method for isolating planktonic microbial biomass for analysis. It is unclear how the taxonomic composition of biomass on a filter changes as a function of filtered water volume, potentially due to filter clogging. Using seawater from a marine oxygen minimum zone, we conducted experiments to ... | root:Environmental:Aquatic:Marine |
MGYS00000652 | Bacterial diversity in agricultural soils | Barcoded amplicon sequencing targeting V4 regions of 16S gene from uncultured soil bacteria. | root:Environmental:Terrestrial:Soil |
MGYS00004566 | Marine metagenome ICM_BSP | Seasonal dynamics of bacterioplankton communities in the Baltic Sea Proper. | root:Environmental:Aquatic:Marine |
MGYS00004567 | Marine metagenome ICM_ABR | Diversity of active microbial communities in surface seawaters along a north-south transect in the South Pacific Ocean. | root:Environmental:Aquatic:Marine |
MGYS00004046 | Prokaryotic community structure in the deep Southwest Indian Ocean with an emphasis on actinobacteria Targeted Locus (Loci) | Knowledge about the biodiversity extent and biogeography of deep-sea microorganisms is far from adequate. Due to its remote location, the related investigations of the Southwest Indian Ocean (SWIR) remaine extremely difficult and the microbial diversity at the SWIR has rarely been studied. Only two studies got limited ... | root:Environmental:Aquatic:Marine:Oceanic:Sediment |
MGYS00005171 | Soil bacterial diversity is associated with human population density in urban greenspaces | Urban greenspaces form a vital part of the urban ecosystem and provide an extensive array of ecosystem services, including pollutant degradation, water management, carbon maintenance, and nutrient cycling. However, while the soil microbiota in these ecosystems are essential to these services they remain under-character... | root:Environmental:Terrestrial:Soil |
MGYS00000770 | Colonization patterns of soil microbial communities in the Atacama Desert | The Atacama Desert is one of the driest deserts in the world and its soil characterized by extremely low moisture, organic carbon content, and oxidizing conditions has been considered to be at the dry limit for life. We collected soil samples from 3 geographic locations in the hyper-arid zone of the Atacama Desert, and... | root:Environmental:Terrestrial:Soil:Desert |
MGYS00004116 | Archaeal diversity of surface seawater (A3,A5,G3,G5) Targeted Locus (Loci) | To investigate the archaeal diversity of sea water from Greatwall cove and Ardley cove, Fildes Peninsula, four surface water samples were collected during the 29th Chinese Antarctic scientific expedition in 2013. | root:Environmental:Aquatic:Marine |
MGYS00001724 | 16S amplicon based soil and leaf microbiome survey in Hungarian vineyards | Seven Hungarian wine regions have been sampled for leaf and 20cm deep soil samples from the same plants. All vineyards are of different soil types and grape cultivars. Total DNA has been extracted and 16S amplicon sequencing has been applied to the samples. | root:Host-associated:Plants |
MGYS00002807 | Southern Ocean | Southern Ocean bacterioplankton community | root:Environmental:Aquatic:Marine:Oceanic |
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