study_id stringlengths 12 12 | study_name stringlengths 2 506 ⌀ | study_abstract stringlengths 1 7.48k ⌀ | lineage stringclasses 298
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MGYS00001813 | Investigation of the suitability of Remane’s species minimum concept in a Mediterranean transitional waters ecosystem | The aim of the present study was to investigate the sediment bacterial diversity of a transect river-lagoon-open sea, i.e. from freshwater to marine, occurring at Amvrakikos Gulf (Ionian Sea, Western Greece) and to test whether it follows the Remane's concept, both in terms of species composition but also of functional... | root:Environmental:Aquatic:Marine:Oceanic:Benthic |
MGYS00004651 | Composition and Genetic Diversity of Microbial Communities in Subtropical Coastal Wetland Sediments | This study aimed to examine the composition and genetic diversity of bacterial, archaeal and fungal communities in surface sediments of a subtropical coastal wetland. | root:Environmental:Aquatic:Freshwater:Wetlands:Sediment |
MGYS00002736 | CARBOM cruise 2013 flow cytometry sorted phytoplankton | null | root:Environmental:Aquatic:Marine |
MGYS00005232 | Dorrestein_3D_metabolic_map | Skin samples from human 3D metabolic map | root:Host-associated:Human:Skin |
MGYS00000813 | Bacterial community composition of divergent soil habitats in a polar desert Metagenome | A 16S rDNA sequencing approach was used to examine the differences in diversity and community composition between three divergent soil habitats of the McMurdo Dry Valleys, Antarctica. | root:Environmental:Terrestrial:Soil:Desert |
MGYS00004599 | Microbial communities associated with Juncus roemerianus and Spartina alterniflora vegetated sediments in Louisiana saltmarshes | "Saltmarshes are typically dominated by perennial grasses with large underground rhizome systems that can change local sediment conditions and be important in shaping the sediment microbial community. Factors that control plant zonation in saltmarshes (e.g. salinity) are also likely to influence the microbial community... | root:Environmental:Aquatic:Marine:Intertidal zone:Salt marsh |
MGYS00004045 | Marine metagenome ICM_WBS | Pyrosequencing as a paleometagenomical tool offers a window into Holocene plankton, littoral fauna, and terrestrial vegetation in the Black Sea. | root:Environmental:Aquatic:Marine |
MGYS00004052 | Diversity patterns of uncultured Haptophytes unravelled by pyrosequencing
in Naples Bay | Haptophytes are a key phylum of marine protists, including ~300
described morphospecies and 80 morphogenera. We used 454-pyrosequencing on large
subunit ribosomal DNA (LSU rDNA) fragments to assess the diversity from size
fractioned plankton samples collected in the Bay o... | root:Environmental:Aquatic:Marine:Coastal |
MGYS00000998 | Soil microbiome CENEB Metagenome | This project investigated three agricultural practices, i.e. different raised bed planting systems (tilled raised beds vs permanent raised beds), different levels of residue retention (full, partial and no retention of crop residue) and two application rates of inorganic N fertilizer (0 or 300 kg N ha-1), at a 20-year ... | root:Environmental:Terrestrial:Soil:Agricultural |
MGYS00005501 | Plant niche rather than soil or species shapes the microbiota | Plant niche rather than soil or species shapes the microbiota. Plants are colonised in 2 weeks time and this process is continuous. | root:Environmental:Terrestrial:Soil |
MGYS00000833 | Soil bacteria on root-knot nematodes and in bulk soil, 16S rRNA genes | Bacterial communities associated with juveniles of the plant-parasitic nematode Meloidogyne hapla in three arable soils of differing supressiveness | root:Host-associated |
MGYS00001457 | Bacterial community during the Austral summer in the Amundsen Sea Polynya, Antarctica | 454-pyrosequencing (16S rDNA) dataset of bacterial community in the Amundsen Sea Polynya from the ASPIRE research expedition in Antarctica during the Austral summer 2010-2011. In situ and experimental incubation samples are included in this dataset. | root:Environmental:Aquatic:Marine |
MGYS00002644 | Bacterial Biogeography of Coastal Water in the Northern East China Sea | The Northern East China Sea is a unique marine ecosystem with multiple environmental gradients (e.g. salinity, pH, and nutrients) along northwest to southeast, forming a horn-shaped pattern with Hangzhou Bay as the tip. This study applied 16S amplicon high-throughput sequencing with Illumina MiSeq technique and multipl... | root:Environmental:Aquatic:Marine:Coastal |
MGYS00002663 | Red Sea microbial plankton Raw sequence reads | To examine the diversity of the microbial plankton in the northern and southern extremes of the Red Sea. | root:Environmental:Aquatic:Marine |
MGYS00002819 | Marine bacteria Targeted Locus (Loci) | This study examines the composition of bacterial communities associated with four species of crustose coralline algae. | root:Environmental:Aquatic:Marine:Intertidal zone:Coral reef |
MGYS00004067 | marine sediment metagenome Metagenome | Bacteria in marine sediments (High Arctic) | root:Environmental:Aquatic:Marine:Sediment |
MGYS00004197 | SB Marine Metagenome | The study of bacterial diversity. Marine metagenome from Malaysian coastal water. | root:Environmental:Aquatic:Marine:Coastal |
MGYS00004324 | Temporal dynamics of bacterioplankton community in response to excessive nitrate loading in the oligotrophic coastal water | Coastal ecosystems are receiving elevated inputs of nitrogen (N), primarily as nitrate, from anthropogenic sources. Bacterioplankton play important roles in marine N-cycle. Understanding how excessive N-loading affects marine bacterioplankton communities is critical for the insight into the biodiversity of marine ecosy... | root:Environmental:Aquatic:Marine:Coastal |
MGYS00000810 | Characterization of Growing Bacterial Populations in McMurdo Dry Valley (Antarctica) Soils through Stable Isotope Probing with 18O-water | Stable isotope probing of soil bacterial DNA with 18O labeled water was performed to identify which bacterial populations are active by sequencing 16S rRNA gene sequences from heavy and light fractions of soil DNA. | root:Environmental:Terrestrial:Soil |
MGYS00004322 | Evidence of bacterioplankton community adaption in responses to long-term mariculture disturbance | Mariculture activity acts as a disturbance to bacterioplankton community because it results in coastal eutrophication known to alter the bacterial composition. However, to what extent that such disturbance affects turnover of bacterioplankton community composition (BCC) and network interactions among bacterial assembla... | root:Environmental:Aquatic:Marine:Coastal |
MGYS00001160 | Bacterial communitiesl in first and subsequent rounds in Korean ginseng field soil | Investigation of bacterial diversities and communities in the soil of ginseng fields at the first round and subsequent round | root:Environmental:Terrestrial:Soil:Agricultural |
MGYS00004212 | Foraminifera Metagenome | Spatial patchiness is a natural feature that strongly influences the level of species richness we perceive in surface sediments sampled in the deep-sea. Recent environmental DNA (eDNA) surveys of benthic micro- and meiofauna confirmed this exceptional richness. However, it is unknown to which extent the results of thes... | root:Environmental:Aquatic:Marine:Sediment |
MGYS00004177 | Spatial Variation of Coastal Bacterioplankton Community along a Nitrogen and Phosphorus Co-pollution Gradient | Anthropogenic discharges of nitrogen (N) and phosphorus (P) have caused widespread threats to coastal ecosystems. Bacterioplankton are known to play crucial roles in N/P cycling in marine environments, but little is known about how bacterioplankton community responds to N-P co-pollution. Here, we collected surface seaw... | root:Environmental:Aquatic:Marine |
MGYS00004047 | Peruvian eddy shotgun metagenomes | Shotgun metagenomes sampled from a mesoscale water eddy during strong upwelling conditions in Eastern tropical South Pacific waters off the Peruvian coast, February to March 2013. | root:Environmental:Aquatic:Marine:Pelagic |
MGYS00006649 | EMG produced TPA metagenomics assembly of PRJNA748214 data set (saliva samples Raw sequence reads). | The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set PRJNA748214, and was assembled with metaSPAdes v3.14.1, SPAdes v3.14.1. This project includes samples from the following biomes: root:Host-associated:Human:Digestive system:Oral:Saliva. | root:Host-associated:Human:Digestive system:Oral:Saliva |
MGYS00006644 | EMG produced TPA metagenomics assembly of PRJNA408025 data set (Global studies of microbial diversity in pig gut). | The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set PRJNA408025, and was assembled with metaSPAdes v3.15.3. This project includes samples from the following biomes: root:Host-associated:Mammals:Digestive system:Fecal. | root:Host-associated:Mammals:Digestive system:Fecal |
MGYS00006647 | EMG produced TPA metagenomics assembly of PRJNA737271 data set (Piglet gut and in-barn manure from farms on Raised Without Antibiotics program display a reduced antimicrobial resistance but an increased prevalence of pathogens). | The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set PRJNA737271, and was assembled with metaSPAdes v3.15.3. This project includes samples from the following biomes: root:Mixed. | root:Mixed |
MGYS00006646 | EMG produced TPA metagenomics assembly of PRJNA645191 data set (Parity is associated with maternal gut microbiome composition during pregnancy and offspring microbiome composition in pigs). | The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set PRJNA645191, and was assembled with megahit v1.2.9. This project includes samples from the following biomes: root:Host-associated:Mammals:Digestive system:Fecal. | root:Host-associated:Mammals:Digestive system:Fecal |
MGYS00006645 | EMG produced TPA metagenomics assembly of PRJNA575543 data set (Metagenomic characterization of intestinal regions in pigs with contrasting feed efficiency). | The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set PRJNA575543, and was assembled with metaSPAdes v3.15.3. This project includes samples from the following biomes: root:Host-associated:Mammals:Digestive system. | root:Host-associated:Mammals:Digestive system |
MGYS00006641 | EMG produced TPA metagenomics assembly of PRJNA547717 data set (human oral metagenome Raw sequence reads). | The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set PRJNA547717, and was assembled with metaSPAdes v3.14.1. This project includes samples from the following biomes: root:Host-associated:Human:Digestive system:Oral. | root:Host-associated:Human:Digestive system:Oral |
MGYS00006643 | EMG produced TPA metagenomics assembly of PRJEB21574 data set (We studied the effect of different zinc sources on the intestinal microbiome in weaned pigs). | The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set PRJEB21574, and was assembled with metaSPAdes v3.15.3. This project includes samples from the following biomes: root:Host-associated:Mammals:Digestive system:Fecal. | root:Host-associated:Mammals:Digestive system:Fecal |
MGYS00006642 | EMG produced TPA metagenomics assembly of PRJDB5315 data set (Metgenomic analysis of human saliva microbiome from healthy subjects). | The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set PRJDB5315, and was assembled with SPAdes v3.14.1. This project includes samples from the following biomes: root:Host-associated:Human:Digestive system:Oral:Saliva. | root:Host-associated:Human:Digestive system:Oral:Saliva |
MGYS00006364 | EMG produced TPA metagenomics assembly of PRJEB36291 data set (Defining the oral microbiome by Whole Genome Sequencing and resistome analysis: the complexity of the healthy picture). | The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set PRJEB36291, and was assembled with megahit v1.2.9. This project includes samples from the following biomes: root:Host-associated:Human:Digestive system:Oral. | root:Host-associated:Human:Digestive system:Oral |
MGYS00006640 | EMG produced TPA metagenomics assembly of PRJNA678453 data set (Species-specific gene expression of the oral microbiota in health and diesease). | The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set PRJNA678453, and was assembled with metaspades v3.15.3. This project includes samples from the following biomes: root:Host-associated:Human:Digestive system:Oral. | root:Host-associated:Human:Digestive system:Oral |
MGYS00006639 | EMG produced TPA metagenomics assembly of PRJNA741688 data set (saliva metagenomic analysis of Crohn`s disease-related periodontitis). | The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set PRJNA741688, and was assembled with metaSPAdes v3.15.3. This project includes samples from the following biomes: root:Host-associated:Human:Digestive system:Oral:Saliva. | root:Host-associated:Human:Digestive system:Oral:Saliva |
MGYS00006638 | Early life nasopharyngeal bacteriome in a low-income community in South Africa | Public description:Imbalances in early life nasopharyngeal (NP) bacterial profiles have been associated with lower respiratory tract infection (LRTI) but are understudied in low-income communities where risk factors for LRTI are prevalent. We intensively investigated longitudinal NP bacterial profiles, and associated e... | root:Host-associated:Human:Respiratory system:Nasopharyngeal |
MGYS00005157 | Eukaryotic diversity in Central Park | Soil biota play key roles in the functioning of terrestrial ecosystems, however, compared to our knowledge of aboveground plant and animal diversity, the biodiversity found in soils remains largely uncharacterized. Here we present an assessment of soil biodiversity and biogeographical patterns across Central Park in Ne... | root:Mixed |
MGYS00001368 | Comprehensive amplicon-based metagenome analyses reveal long-term impacts of timber harvesting on soil microbial communities at reforested sites across North America. | Soil management is necessary to ensure the fertility of reforested land, yet the long-term impact of harvesting on the soil microbial communities which mediate fertility remains largely a matter of conjecture. In 1989, the North American-wide ‘long-term soil productivity’ (LTSP) study was initiated to assess the impact... | root:Host-associated:Plants:Rhizosphere:Forest soil |
MGYS00002652 | Marine Water Column Samples Targeted loci environmental | Surface water samples collected from locations within Mobile Bay out into the northern Gulf of Mexico shelf region off the coast of Alabama for examination of microbial eukaryotes. 20-24 L water samples were collected bi-monthly from July 2009- Dec 2011, prefiltered through a 150um mesh and eukaryotic fraction was coll... | root:Environmental:Aquatic:Marine |
MGYS00001362 | Ecozone dependent impact of forest harvesting on soil microbial community structure | Here we examined the microbial communities in soils from both the organic and mineral layer from 18 sites in six ecozones across North America. This is 16S rRNA gene data | root:Environmental:Terrestrial:Soil:Loam:Forest soil |
MGYS00006637 | Metagenomes of marine macroalgae, surrounding seawater and surrounding sediments | Here we analysed the microbial ecology of marine macroalgae, surrounding seawater, and surrounding sediment at Weihai, China (122.12 N, 37.56 E). Metagenomic sequencing of marine macroalgae, surrounding seawater, and surrounding sediment samples collected on 4 sampling dates in the year 2018-2019. For macroalgae, loose... | root:Environmental:Aquatic:Marine |
MGYS00000596 | American Gut Project | The American Gut project is the largest crowdsourced citizen science project to date. Fecal, oral, skin, and other body site samples collected from thousands of participants represent the largest human microbiome cohort in existence. Detailed health and lifestyle and diet data associated with each sample is enabling us... | root:Host-associated:Human |
MGYS00006636 | EMG produced TPA metagenomics assembly of PRJNA932553 data set (Oral microbiome in periodontitis). | The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set PRJNA932553, and was assembled with metaspades v3.15.3. This project includes samples from the following biomes: root:Host-associated:Human:Digestive system:Oral. | root:Host-associated:Human:Digestive system:Oral |
MGYS00006366 | EMG produced TPA metagenomics assembly of PRJNA548383 data set (Subgingival Microbiome of Tobacco Cigarette Smokers with and without Periodontal Disease). | The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set PRJNA548383, and was assembled with metaSPAdes v3.15.3. This project includes samples from the following biomes: root:Host-associated:Human:Digestive system:Oral:Subgingival plaque. | root:Host-associated:Human:Digestive system:Oral:Subgingival plaque |
MGYS00006621 | EMG produced TPA metagenomics assembly of PRJNA373834 data set (Metagenomic analysis of gut microbiota in sows and piglets). | The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set PRJNA373834, and was assembled with metaSPAdes v3.15.3. This project includes samples from the following biomes: root:Host-associated:Mammals:Digestive system:Fecal. | root:Host-associated:Mammals:Digestive system:Fecal |
MGYS00006635 | EMG produced TPA metagenomics assembly of PRJNA752888 data set (Longitudinal saliva bacteriome and early childhood caries). | The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set PRJNA752888, and was assembled with metaspades v3.15.3. This project includes samples from the following biomes: root:Host-associated:Human:Digestive system:Oral:Saliva. | root:Host-associated:Human:Digestive system:Oral:Saliva |
MGYS00003168 | Microbial indicators of anthropogenic marine pollution identified by 16S and 18S metagenomic library analysis | Microbial indicators of anthropogenic marine pollution identified by 16S and 18S metagenomic library analysis. Research supported by FP7 European Project “Winning Applications of nanoTEchnology for Resolutive hydropurification – WATER” (Grant Agreement n° 316082). | root:Environmental:Aquatic:Marine |
MGYS00001502 | Gut Microbiota Regulate Motor Deficits and Neuroinflammation in a Model of Parkinson's Disease | The intestinal microbiota influence neurodevelopment, modulate behavior, and contribute to neurological disorders. However, a functional link between gut bacteria and neurodegenerative diseases remains unexplored. Synucleinopathies are characterized by aggregation of the protein α-synuclein (αSyn), often resulting in m... | root:Host-associated |
MGYS00005200 | Metabarcoding surveys of the Arctic marine environment | This is a collection of samples taken for metabarcoding of environmental samples following the Earth Microbiome Project protocol.For bacteria and archaea, we used the following primer set published by Apprill et al. (doi:10.3354/ame01753)515F GTGCCAGCMGCCGCGGTAA806RB GGACTACNVGGGTWTCTAATFor Eukaryotes, we used the foll... | root:Mixed |
MGYS00000910 | Different agricultural practices amended with bean residues Metagenome | To investigate how different management practices affected the bacterial community structure in soil, ii) to investigate how the application of bean residue affected the bacterial community structure in soil with different agricultural practices and iii) compare the bacterial populations involved in the mineralization ... | root:Environmental:Terrestrial:Soil:Agricultural |
MGYS00002604 | Community structure of Archaea in the western North Pacific and the Arctic Ocean | we report archaeal community structure in the western North Pacific and the Arctic Ocean based on the deep sequencing of 16S rRNA genes directly amplified from seawater filtrates. | root:Environmental:Aquatic:Marine |
MGYS00004564 | Marine DNA/RNA samples from Western English Channel site L4 | Marine DNA/RNA samples from Western English Channel site L4. The seasonal structure of microbial communities in the Western English Channel - 2007 Here we present a multi-omic study of the Bacterial and Archaeal diversity found at the L4 long-term marine observatory. We have previously generated a six year time se... | root:Environmental:Aquatic:Marine |
MGYS00001790 | Elevated CO2 induces a bloom of microphytobenthos | The geological storage of carbon dioxide (CO2), captured from large industries and power plants, is expected to be an important component of future carbon emissions mitigation globally. Alongside the need to understand the impacts of a CO2 leak on the marine environment, there is an urgent need to develop monitoring pr... | root:Environmental:Aquatic:Marine:Sediment |
MGYS00003072 | Whale fall | Deep-sea whale falls create sulfidic habitats of which microbial structure is poorly evaluated. We sampled the sediment in the whale fall area and targeted the V9 of the 18S SSU to determine the protistan community. | root:Environmental:Aquatic:Marine:Sediment |
MGYS00004019 | Baltic Expression Project | cDNA samples were pyrosequenced using 16S rRNA primers. Samples from which cDNA was obtained were surface marine sediment samples from the Bothnian Bay (Baltic Sea) and Skagerrak (North Sea). | root:Environmental:Aquatic:Marine:Sediment |
MGYS00004671 | Gulf of Mexico Alkane Reactors Metagenome | Pyrosequencing of Gulf of Mexico sediments from anaerobic batch reactors with short-chain alkanes. | root:Environmental:Aquatic:Marine:Sediment |
MGYS00004389 | Depth profile of ancient sediments | Recruitment of bacteria from the different depth of sediments | root:Environmental:Aquatic:Marine:Coastal:Sediment |
MGYS00004090 | marine metagenome Targeted Locus (Loci) | This project investigated the production of different classes of iron-binding ligands, iron concentrations, macronutrient concentrations, and phytoplankton and bacterioplankton assemblage composition in iron amended microcosm incubations conducted in oligotrophic waters collected off the Southern California Bight. | root:Environmental:Aquatic:Marine |
MGYS00003085 | Marine metagenome ICM_LCR | The LACAr cooperative project: microbial diversity in coastal systems along a latitudinal gradient from South Atlantic to the Caribbean. | root:Environmental:Aquatic:Marine |
MGYS00000657 | Composition and structure of soil fungal community in Inner Mongolian steppe | Fungi serve important roles in terrestrial ecosystem. However, its geographic distribution and driving factors shaping fungal community structure remain elusive. In this study, we utilized Illumina Miseq sequencing technique for the nuclear ribosomal internal transcribed spacer 2 (ITS2) region to investigate soil funga... | root:Environmental:Terrestrial:Soil |
MGYS00000962 | Soil bacteria Targeted Locus (Loci) | The goal of this study was to assess the spatial distribution of soil bacteria in an agricultural context. We compared soil bacterial communities in corn and switchgrass cropping systems across a topographic gradient and two years. In addition, we quantified scale-specific spatial patterning of soil bacterial communiti... | root:Environmental:Terrestrial:Soil:Agricultural |
MGYS00002405 | Polymetallic nodule field Targeted loci environmental | Abyssal sediments, polymetallic nodules, and water-column samples were collected from the UKSRL1 claim area within the Clarion-Clipperton fracture zone in the Pacific Ocean. | root:Environmental:Aquatic:Marine:Oceanic |
MGYS00002648 | ADDOMEx | Here we describe microbial community dynamics in the GOMOO mesocosm experiment. Using 16S rRNA gene sequencing of filtered water samples collected every 12 hours from the mesocosm treatments, we characterized community membership and structure to determine how the mesocosm communities responded to the water accomdated ... | root:Environmental:Aquatic:Marine:Intertidal zone:Oil-contaminated |
MGYS00001034 | Changes in the bacterial communities of subtropical soils from Argentina with different land uses. | The goal of this study was to analyze the modifications in the structure of the bacterial communities from Argentinean subtropical soils caused by changes in land use. The samples included soils from undisturbed forests and from sites that were deforested between 100 and 5 years ago and used for soybean or sugar cane c... | root:Environmental:Terrestrial:Soil |
MGYS00001563 | Evaluation of molecular techniques in characterization of deep terrestrial biosphere | Depending to the methods used for characterization of uncultured microbial communities from environmental samples, the results may differ profoundly. Here we have employed three different molecular community screening tools (DGGE, cloning, NGS) and compared their performance for revealing the microbial community profil... | root:Environmental:Aquatic:Freshwater:Groundwater |
MGYS00002448 | Biological rejuvenation of iron oxides in bioturbated marine sediments | This project seeked to understand the distribution of iron-oxidizing Zetaproteobacteria in coastal marine sediments, which could allude to their importance to the Fe cycle in these systems. | root:Environmental:Aquatic:Marine:Oceanic:Sediment |
MGYS00003172 | San Diego Seagrass | For a comparative analysis of microbial community structure between sites with and without seagrass in and outside of San Diego Bay. | root:Host-associated:Plants |
MGYS00004365 | PCB-contaminated sediment Genome sequencing | Extracellular organic matter (EOM) from Micrococcus luteus was used to enhance biphenyl biodegradation. The effect of the EOM on the composition of bacterial community was investigated by Illumina high-throughput sequencing. | root:Environmental:Aquatic:Marine:Sediment |
MGYS00004193 | L''Atalante sediment - Extracellular Metagenome | SSU 16S pyrosequencing project of the extracellular DNA metagenome of a DHAB sediment (L''Atalante) from the Eastern Mediterranean. | root:Environmental:Aquatic:Marine:Sediment |
MGYS00001767 | Plastisphere Targeted Locus (Loci) | Plastic marine debris is a recent introduction to marine ecosystems resulting from the widespread use of polymers in consumer goods after World War II. The current global annual production of plastic is 245 million tonnes or 35 kg of plastic for each of the 7 billion humans on the planet, rivaling the combined biomass ... | root:Environmental:Aquatic:Marine |
MGYS00000592 | EFFECT OF POSTNATAL LOW-DOSE EXPOSURE TO ENVIRONMENTAL CHEMICALS ON THE GUT MICROBIOME IN A RODENT MODEL | Using the Sprague-Dawley rat model, three chemicals that are widely used in personal care products, i.e. diethyl phthalate (DEP), methyl paraben (MPB), triclosan (TCS) and their mixture (MIX), were administered at doses comparable to human exposure from birth through adulthood. The fecal samples were collected at two t... | root:Host-associated:Mammals:Digestive system:Large intestine:Fecal |
MGYS00006631 | EMG produced TPA metagenomics assembly of PRJEB54966 data set (Papua New Guinean oral metagenomes). | The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set PRJEB54966, and was assembled with metaspades v3.15.3. This project includes samples from the following biomes: root:Host-associated:Human:Digestive system:Oral. | root:Host-associated:Human:Digestive system:Oral |
MGYS00006629 | EMG produced TPA metagenomics assembly of PRJNA779415 data set (Vaginal microbiome of reproductive age mother daughter pairs). | The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set PRJNA779415, and was assembled with metaSPAdes v3.15.3. This project includes samples from the following biomes: root:Host-associated:Human:Reproductive system:Vagina. | root:Host-associated:Human:Reproductive system:Vagina |
MGYS00006630 | EMG produced TPA metagenomics assembly of PRJEB37382 data set (Assessment of different methods for library preparation of human vaginal samples). | The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set PRJEB37382, and was assembled with metaSPAdes v3.15.3. This project includes samples from the following biomes: root:Host-associated:Human:Reproductive system:Vagina. | root:Host-associated:Human:Reproductive system:Vagina |
MGYS00006628 | EMG produced TPA metagenomics assembly of PRJEB51898 data set (Vaginal metagenome dataset of 47 healthy women). | The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set PRJEB51898, and was assembled with metaSPAdes v3.15.3. This project includes samples from the following biomes: root:Host-associated:Human:Reproductive system:Vagina. | root:Host-associated:Human:Reproductive system:Vagina |
MGYS00006627 | EMG produced TPA metagenomics assembly of PRJNA669294 data set (Effect of metronidazole on vaginal microbiota associated with asymptomatic bacterial vaginosis). | The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set PRJNA669294, and was assembled with metaSPAdes v3.15.3. This project includes samples from the following biomes: root:Host-associated:Human:Reproductive system:Vagina. | root:Host-associated:Human:Reproductive system:Vagina |
MGYS00006626 | EMG produced TPA metagenomics assembly of PRJNA760651 data set (Exploring the possible link between the gut microbiome and fat deposition in pigs). | The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set PRJNA760651, and was assembled with metaSPAdes v3.15.3. This project includes samples from the following biomes: root:Host-associated:Mammals:Digestive system:Fecal. | root:Host-associated:Mammals:Digestive system:Fecal |
MGYS00006625 | EMG produced TPA metagenomics assembly of PRJNA741980 data set (Comparison of viromes and microbiomes of 14 pig fecal samples). | The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set PRJNA741980, and was assembled with metaSPAdes v3.15.3. This project includes samples from the following biomes: root:Host-associated:Mammals:Digestive system:Fecal. | root:Host-associated:Mammals:Digestive system:Fecal |
MGYS00006623 | EMG produced TPA metagenomics assembly of PRJNA793167 data set (Healthy and diarrhea piglets feces microbiota analysis). | The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set PRJNA793167, and was assembled with metaSPAdes v3.15.3. This project includes samples from the following biomes: root:Host-associated:Mammals:Digestive system:Fecal. | root:Host-associated:Mammals:Digestive system:Fecal |
MGYS00006622 | EMG produced TPA metagenomics assembly of PRJEB19642 data set (Metagenomic analysis of gut microbiota in sows and piglets (EBI)). | The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set PRJEB19642, and was assembled with metaSPAdes v3.15.3. This project includes samples from the following biomes: root:Host-associated:Mammals:Digestive system:Fecal. | root:Host-associated:Mammals:Digestive system:Fecal |
MGYS00006624 | EMG produced TPA metagenomics assembly of PRJEB15296 data set (Structure and function of the fecal microbiota in diarrhoeic neonatal piglets). | The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set PRJEB15296, and was assembled with metaSPAdes v3.15.3. This project includes samples from the following biomes: root:Host-associated:Mammals:Digestive system:Fecal. | root:Host-associated:Mammals:Digestive system:Fecal |
MGYS00006620 | EMG produced TPA metagenomics assembly of PRJNA389749 data set (Caecal Metagenome of Pigs). | The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set PRJNA389749, and was assembled with metaSPAdes v3.15.3. This project includes samples from the following biomes: root:Host-associated:Mammals:Digestive system:Large intestine:Cecum. | root:Host-associated:Mammals:Digestive system:Large intestine:Cecum |
MGYS00006619 | EMG produced TPA metagenomics assembly of PRJNA757683 data set (Apical Periodontitis). | The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set PRJNA757683, and was assembled with metaSPAdes v3.15.3. This project includes samples from the following biomes: root:Host-associated:Human:Digestive system:Oral. | root:Host-associated:Human:Digestive system:Oral:Saliva |
MGYS00006615 | EMG produced TPA metagenomics assembly of PRJNA380727 data set (human saliva metagenome Raw sequence reads). | The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set PRJNA380727, and was assembled with metaSPAdes v3.15.3, SPAdes v3.15.3. This project includes samples from the following biomes: root:Host-associated:Human:Digestive system:Oral:Saliva. | root:Host-associated:Human:Digestive system:Oral:Saliva |
MGYS00006614 | EMG produced TPA metagenomics assembly of PRJNA470402 data set (human saliva metagenome Raw reads). | The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set PRJNA470402, and was assembled with metaSPAdes v3.15.3, SPAdes v3.15.3. This project includes samples from the following biomes: root:Host-associated:Human:Digestive system:Oral:Saliva. | root:Host-associated:Human:Digestive system:Oral:Saliva |
MGYS00006618 | EMG produced TPA metagenomics assembly of PRJNA791464 data set (Oral saliva microorganisms in 3-year-old children with different caries risk). | The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set PRJNA791464, and was assembled with metaSPAdes v3.15.3. This project includes samples from the following biomes: root:Host-associated:Human:Digestive system:Oral:Saliva. | root:Host-associated:Human:Digestive system:Oral:Saliva |
MGYS00006617 | EMG produced TPA metagenomics assembly of PRJDB10606 data set (Shotgun metagenome sequencing of saliva microbiome of MRONJ patients using HiSeq). | The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set PRJDB10606, and was assembled with metaSPAdes v3.15.3. This project includes samples from the following biomes: root:Host-associated:Human:Digestive system:Oral:Saliva. | root:Host-associated:Human:Digestive system:Oral:Saliva |
MGYS00006616 | EMG produced TPA metagenomics assembly of PRJNA762218 data set (Salivary Microbiome in Adenoid Cystic Carcinoma). | The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set PRJNA762218, and was assembled with metaSPAdes v3.15.3. This project includes samples from the following biomes: root:Host-associated:Human:Digestive system:Oral:Saliva. | root:Host-associated:Human:Digestive system:Oral:Saliva |
MGYS00006613 | 18S rRNA amplicon sequencing from the Ocean Sampling Day (OSD) campaign June 2018 | Ocean Sampling Day was initiated by the EU-funded Micro B3 (Marine Microbial Biodiversity, Bioinformatics, Biotechnology) project to obtain a snapshot of the marine microbial biodiversity and function of the world’s oceans. It is a simultaneous global mega-sequencing campaign aiming to generate the largest standardized... | root:Environmental:Aquatic:Marine |
MGYS00006612 | 18S rRNA amplicon sequencing from the Ocean Sampling Day (OSD) campaign June 2019 | Ocean Sampling Day was initiated by the EU-funded Micro B3 (Marine Microbial Biodiversity, Bioinformatics, Biotechnology) project to obtain a snapshot of the marine microbial biodiversity and function of the world’s oceans. It is a simultaneous global mega-sequencing campaign aiming to generate the largest standardized... | root:Environmental:Aquatic:Marine |
MGYS00006611 | 18S rRNA amplicon sequencing from the Ocean Sampling Day (OSD) campaign June 2018 | Ocean Sampling Day was initiated by the EU-funded Micro B3 (Marine Microbial Biodiversity, Bioinformatics, Biotechnology) project to obtain a snapshot of the marine microbial biodiversity and function of the world’s oceans. It is a simultaneous global mega-sequencing campaign aiming to generate the largest standardized... | root:Environmental:Aquatic:Marine |
MGYS00006609 | Amplicon sequencing of Tara Oceans Polar Circle DNA samples corresponding to size fractions for protists. | Analysis of 18S DNA in Tara Oceans Polar Circle Protists size fractions through amplicon sequencing: Seawater was filtered from different depths to retain small and large cell sizes. The DNA was extracted and amplified by PCR. | root:Environmental:Aquatic:Marine |
MGYS00006608 | 16S rRNA amplicon sequencing from the Ocean Sampling Day (OSD) campaign June 2018 | Ocean Sampling Day was initiated by the EU-funded Micro B3 (Marine Microbial Biodiversity, Bioinformatics, Biotechnology) project to obtain a snapshot of the marine microbial biodiversity and function of the world’s oceans. It is a simultaneous global mega-sequencing campaign aiming to generate the largest standardized... | root:Environmental:Aquatic:Marine |
MGYS00006607 | 16S rRNA amplicon sequencing from the Ocean Sampling Day (OSD) campaign June 2019 | Ocean Sampling Day was initiated by the EU-funded Micro B3 (Marine Microbial Biodiversity, Bioinformatics, Biotechnology) project to obtain a snapshot of the marine microbial biodiversity and function of the world’s oceans. It is a simultaneous global mega-sequencing campaign aiming to generate the largest standardized... | root:Environmental:Aquatic:Marine |
MGYS00006606 | Amplicon sequencing of Tara Oceans Polar Circle DNA samples corresponding to size fractions for prokaryotes. | Analysis of 16S DNA in Tara Oceans Polar Circle Prokaryotes size fractions through amplicon sequencing: Seawater was filtered from different depths to retain small cell sizes. The DNA was extracted and amplified by PCR. | root:Environmental:Aquatic:Marine |
MGYS00006605 | Amplicon sequencing of Tara Oceans DNA samples corresponding to size fractions for prokaryotes. | Analysis of 16S DNA in Tara Oceans Prokaryotes size fractions through amplicon sequencing: Seawater was filtered from different depths to retain small cell sizes. The DNA was extracted and amplified by PCR. | root:Environmental:Aquatic:Marine |
MGYS00006601 | sponge metagenome genome assembly, odCliOrie1.metagenome | This project provides the full unbinned assembly of Cliona orientalis and associated organisms. The assembly is provided by the Aquatic Symbiosis Genomics Project (https: //www.aquaticsymbiosisgenomics.org/). The data under this project are made available subject to the Tree of Life Open Data Release Policy (https: //w... | root:Host-associated:Porifera |
MGYS00006599 | sponge metagenome genome assembly, odXesMuta1.metagenome | This project provides the full unbinned assembly of Xestospongia muta and associated organisms. The assembly is provided by the Aquatic Symbiosis Genomics Project (https: //www.aquaticsymbiosisgenomics.org/). The data under this project are made available subject to the Tree of Life Open Data Release Policy (https: //w... | root:Host-associated:Porifera |
MGYS00006600 | annelid metagenome genome assembly, wcBraLoba9.metagenome | This project provides the full unbinned assembly of Branchellion lobata and associated organisms. The assembly is provided by the Aquatic Symbiosis Genomics Project (https: //www.aquaticsymbiosisgenomics.org/). The data under this project are made available subject to the Tree of Life Open Data Release Policy (https: /... | root:Host-associated:Annelida |
MGYS00006598 | sponge metagenome genome assembly, odAgeOroi1.metagenome | This project provides the full unbinned assembly of Agelas oroides and associated organisms. The assembly is provided by the Aquatic Symbiosis Genomics Project (https: //www.aquaticsymbiosisgenomics.org/). The data under this project are made available subject to the Tree of Life Open Data Release Policy (https: //www.... | root:Host-associated:Porifera |
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