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(module (function_definition (function_name_variable_iter) function_name_variable_iter (parameters (identifier_self) identifier_self (identifier_base) identifier_base )parameters (block (expression_statement (assignment (identifier_base_substs) identifier_base_substs (call (identifier_dict) identifier_dict (generator_expression (tuple (binary_operator (binary_operator (string_'<') string_'<' (identifier_t) identifier_t )binary_operator (string_'>') string_'>' )binary_operator (identifier_u) identifier_u )tuple (for_in_clause (tuple_pattern (identifier_t) identifier_t (identifier_u) identifier_u )tuple_pattern (call (attribute (identifier_base) identifier_base (identifier_items) identifier_items )attribute (argument_list )argument_list )call )for_in_clause )generator_expression )call )assignment )expression_statement (expression_statement (assignment (identifier_substs) identifier_substs (list )list )assignment )expression_statement (expression_statement (assignment (identifier_vals) identifier_vals (list )list )assignment )expression_statement (for_statement (identifier_with_defn) identifier_with_defn (attribute (identifier_self) identifier_self (identifier_with_exprs) identifier_with_exprs )attribute (block (expression_statement (call (attribute (identifier_substs) identifier_substs (identifier_append) identifier_append )attribute (argument_list (binary_operator (binary_operator (string_'<') string_'<' (subscript (identifier_with_defn) identifier_with_defn (integer_0) integer_0 )subscript )binary_operator (string_'>') string_'>' )binary_operator )argument_list )call )expression_statement (expression_statement (call (attribute (identifier_vals) identifier_vals (identifier_append) identifier_append )attribute (argument_list (call (attribute (identifier_Host) identifier_Host (identifier_expand_with) identifier_expand_with )attribute (argument_list (subscript (identifier_with_defn) identifier_with_defn (slice (integer_1) integer_1 (colon) colon )slice )subscript )argument_list )call )argument_list )call )expression_statement )block )for_statement (for_statement (identifier_val_tpl) identifier_val_tpl (call (identifier_product) identifier_product (argument_list (list_splat (identifier_vals) identifier_vals )list_splat )argument_list )call (block (expression_statement (assignment (identifier_r) identifier_r (call (attribute (identifier_base_substs) identifier_base_substs (identifier_copy) identifier_copy )attribute (argument_list )argument_list )call )assignment )expression_statement (expression_statement (call (attribute (identifier_r) identifier_r (identifier_update) identifier_update )attribute (argument_list (call (identifier_dict) identifier_dict (argument_list (call (identifier_zip) identifier_zip (argument_list (identifier_substs) identifier_substs (identifier_val_tpl) identifier_val_tpl )argument_list )call )argument_list )call )argument_list )call )expression_statement (expression_statement (yield (identifier_r) identifier_r )yield )expression_statement )block )for_statement )block )function_definition )module
returns iterator over the cross product of the variables for this stanza
(module (function_definition (function_name_transform) function_name_transform (parameters (identifier_self) identifier_self (identifier_vector) identifier_vector )parameters (block (if_statement (call (identifier_isinstance) identifier_isinstance (argument_list (identifier_vector) identifier_vector (identifier_RDD) identifier_RDD )argument_list )call (block (expression_statement (assignment (identifier_vector) identifier_vector (call (attribute (identifier_vector) identifier_vector (identifier_map) identifier_map )attribute (argument_list (identifier__convert_to_vector) identifier__convert_to_vector )argument_list )call )assignment )expression_statement )block (else_clause (block (expression_statement (assignment (identifier_vector) identifier_vector (call (identifier__convert_to_vector) identifier__convert_to_vector (argument_list (identifier_vector) identifier_vector )argument_list )call )assignment )expression_statement )block )else_clause )if_statement (return_statement (call (identifier_callMLlibFunc) identifier_callMLlibFunc (argument_list (string_"elementwiseProductVector") string_"elementwiseProductVector" (attribute (identifier_self) identifier_self (identifier_scalingVector) identifier_scalingVector )attribute (identifier_vector) identifier_vector )argument_list )call )return_statement )block )function_definition )module
Computes the Hadamard product of the vector.
(module (function_definition (function_name_add_nodes) function_name_add_nodes (parameters (identifier_self) identifier_self (identifier_nodes) identifier_nodes )parameters (block (if_statement (not_operator (call (identifier_isinstance) identifier_isinstance (argument_list (identifier_nodes) identifier_nodes (identifier_list) identifier_list )argument_list )call )not_operator (block (expression_statement (assignment (identifier_add_list) identifier_add_list (list (identifier_nodes) identifier_nodes )list )assignment )expression_statement )block (else_clause (block (expression_statement (assignment (identifier_add_list) identifier_add_list (identifier_nodes) identifier_nodes )assignment )expression_statement )block )else_clause )if_statement (expression_statement (call (attribute (attribute (identifier_self) identifier_self (identifier_node_list) identifier_node_list )attribute (identifier_extend) identifier_extend )attribute (argument_list (identifier_add_list) identifier_add_list )argument_list )call )expression_statement )block )function_definition )module
Add a given node or list of nodes to self.node_list. Args: node (Node or list[Node]): the node or list of nodes to add to the graph Returns: None Examples: Adding one node: :: >>> from blur.markov.node import Node >>> graph = Graph() >>> node_1 = Node('One') >>> graph.add_nodes(node_1) >>> print([node.value for node in graph.node_list]) ['One'] Adding multiple nodes at a time in a list: :: >>> from blur.markov.node import Node >>> graph = Graph() >>> node_1 = Node('One') >>> node_2 = Node('Two') >>> graph.add_nodes([node_1, node_2]) >>> print([node.value for node in graph.node_list]) ['One', 'Two']
(module (function_definition (function_name_jsk_git) function_name_jsk_git (parameters (identifier_self) identifier_self (typed_parameter (identifier_ctx) identifier_ctx (type (attribute (identifier_commands) identifier_commands (identifier_Context) identifier_Context )attribute )type )typed_parameter (keyword_separator )keyword_separator (typed_parameter (identifier_argument) identifier_argument (type (identifier_CodeblockConverter) identifier_CodeblockConverter )type )typed_parameter )parameters (block (return_statement (await (call (attribute (identifier_ctx) identifier_ctx (identifier_invoke) identifier_invoke )attribute (argument_list (attribute (identifier_self) identifier_self (identifier_jsk_shell) identifier_jsk_shell )attribute (keyword_argument (identifier_argument) identifier_argument (call (identifier_Codeblock) identifier_Codeblock (argument_list (attribute (identifier_argument) identifier_argument (identifier_language) identifier_language )attribute (binary_operator (string_"git ") string_"git " (attribute (identifier_argument) identifier_argument (identifier_content) identifier_content )attribute )binary_operator )argument_list )call )keyword_argument )argument_list )call )await )return_statement )block )function_definition )module
Shortcut for 'jsk sh git'. Invokes the system shell.
(module (function_definition (function_name_unpickle) function_name_unpickle (parameters (identifier_pickle_file) identifier_pickle_file )parameters (block (expression_statement (assignment (identifier_pickle) identifier_pickle (None) None )assignment )expression_statement (with_statement (with_clause (with_item (as_pattern (call (identifier_open) identifier_open (argument_list (identifier_pickle_file) identifier_pickle_file (string_"rb") string_"rb" )argument_list )call (as_pattern_target (identifier_pickle_f) identifier_pickle_f )as_pattern_target )as_pattern )with_item )with_clause (block (expression_statement (assignment (identifier_pickle) identifier_pickle (call (attribute (identifier_dill) identifier_dill (identifier_load) identifier_load )attribute (argument_list (identifier_pickle_f) identifier_pickle_f )argument_list )call )assignment )expression_statement )block )with_statement (if_statement (not_operator (identifier_pickle) identifier_pickle )not_operator (block (expression_statement (call (attribute (identifier_LOG) identifier_LOG (identifier_error) identifier_error )attribute (argument_list (string_"Could not load python object from file") string_"Could not load python object from file" )argument_list )call )expression_statement )block )if_statement (return_statement (identifier_pickle) identifier_pickle )return_statement )block )function_definition )module
Unpickle a python object from the given path.
(module (function_definition (function_name__get_hanging_wall_coeffs_mag) function_name__get_hanging_wall_coeffs_mag (parameters (identifier_self) identifier_self (identifier_C) identifier_C (identifier_mag) identifier_mag )parameters (block (if_statement (comparison_operator (identifier_mag) identifier_mag (float_5.5) float_5.5 )comparison_operator (block (return_statement (float_0.0) float_0.0 )return_statement )block (elif_clause (comparison_operator (identifier_mag) identifier_mag (float_6.5) float_6.5 )comparison_operator (block (return_statement (binary_operator (float_1.0) float_1.0 (binary_operator (subscript (identifier_C) identifier_C (string_"a2") string_"a2" )subscript (parenthesized_expression (binary_operator (identifier_mag) identifier_mag (float_6.5) float_6.5 )binary_operator )parenthesized_expression )binary_operator )binary_operator )return_statement )block )elif_clause (else_clause (block (return_statement (binary_operator (parenthesized_expression (binary_operator (identifier_mag) identifier_mag (float_5.5) float_5.5 )binary_operator )parenthesized_expression (parenthesized_expression (binary_operator (float_1.0) float_1.0 (binary_operator (subscript (identifier_C) identifier_C (string_"a2") string_"a2" )subscript (parenthesized_expression (binary_operator (identifier_mag) identifier_mag (float_6.5) float_6.5 )binary_operator )parenthesized_expression )binary_operator )binary_operator )parenthesized_expression )binary_operator )return_statement )block )else_clause )if_statement )block )function_definition )module
Returns the hanging wall magnitude term defined in equation 14
(module (function_definition (function_name_initialize) function_name_initialize (parameters (identifier_cls) identifier_cls )parameters (type (None) None )type (block (if_statement (attribute (identifier_cls) identifier_cls (identifier__initialized) identifier__initialized )attribute (block (return_statement )return_statement )block )if_statement (expression_statement (assignment (identifier_io_loop) identifier_io_loop (call (attribute (attribute (identifier_ioloop) identifier_ioloop (identifier_IOLoop) identifier_IOLoop )attribute (identifier_current) identifier_current )attribute (argument_list )argument_list )call )assignment )expression_statement (expression_statement (assignment (attribute (identifier_cls) identifier_cls (identifier__old_sigchld) identifier__old_sigchld )attribute (call (attribute (identifier_signal) identifier_signal (identifier_signal) identifier_signal )attribute (argument_list (attribute (identifier_signal) identifier_signal (identifier_SIGCHLD) identifier_SIGCHLD )attribute (lambda (lambda_parameters (identifier_sig) identifier_sig (identifier_frame) identifier_frame )lambda_parameters (call (attribute (identifier_io_loop) identifier_io_loop (identifier_add_callback_from_signal) identifier_add_callback_from_signal )attribute (argument_list (attribute (identifier_cls) identifier_cls (identifier__cleanup) identifier__cleanup )attribute )argument_list )call )lambda )argument_list )call )assignment )expression_statement (expression_statement (assignment (attribute (identifier_cls) identifier_cls (identifier__initialized) identifier__initialized )attribute (True) True )assignment )expression_statement )block )function_definition )module
Initializes the ``SIGCHLD`` handler. The signal handler is run on an `.IOLoop` to avoid locking issues. Note that the `.IOLoop` used for signal handling need not be the same one used by individual Subprocess objects (as long as the ``IOLoops`` are each running in separate threads). .. versionchanged:: 5.0 The ``io_loop`` argument (deprecated since version 4.1) has been removed. Availability: Unix
(module (function_definition (function_name_get_aws_secrets_from_env) function_name_get_aws_secrets_from_env (parameters )parameters (block (expression_statement (assignment (identifier_keys) identifier_keys (call (identifier_set) identifier_set (argument_list )argument_list )call )assignment )expression_statement (for_statement (identifier_env_var) identifier_env_var (tuple (string_'AWS_SECRET_ACCESS_KEY') string_'AWS_SECRET_ACCESS_KEY' (string_'AWS_SECURITY_TOKEN') string_'AWS_SECURITY_TOKEN' (string_'AWS_SESSION_TOKEN') string_'AWS_SESSION_TOKEN' )tuple (block (if_statement (comparison_operator (identifier_env_var) identifier_env_var (attribute (identifier_os) identifier_os (identifier_environ) identifier_environ )attribute )comparison_operator (block (expression_statement (call (attribute (identifier_keys) identifier_keys (identifier_add) identifier_add )attribute (argument_list (subscript (attribute (identifier_os) identifier_os (identifier_environ) identifier_environ )attribute (identifier_env_var) identifier_env_var )subscript )argument_list )call )expression_statement )block )if_statement )block )for_statement (return_statement (identifier_keys) identifier_keys )return_statement )block )function_definition )module
Extract AWS secrets from environment variables.
(module (function_definition (function_name_set_widgets) function_name_set_widgets (parameters (identifier_self) identifier_self )parameters (block (expression_statement (call (attribute (call (attribute (attribute (identifier_self) identifier_self (identifier_tblFunctions1) identifier_tblFunctions1 )attribute (identifier_horizontalHeader) identifier_horizontalHeader )attribute (argument_list )argument_list )call (identifier_setSectionResizeMode) identifier_setSectionResizeMode )attribute (argument_list (attribute (identifier_QHeaderView) identifier_QHeaderView (identifier_Stretch) identifier_Stretch )attribute )argument_list )call )expression_statement (expression_statement (call (attribute (call (attribute (attribute (identifier_self) identifier_self (identifier_tblFunctions1) identifier_tblFunctions1 )attribute (identifier_verticalHeader) identifier_verticalHeader )attribute (argument_list )argument_list )call (identifier_setSectionResizeMode) identifier_setSectionResizeMode )attribute (argument_list (attribute (identifier_QHeaderView) identifier_QHeaderView (identifier_Stretch) identifier_Stretch )attribute )argument_list )call )expression_statement (expression_statement (call (attribute (identifier_self) identifier_self (identifier_populate_function_table_1) identifier_populate_function_table_1 )attribute (argument_list )argument_list )call )expression_statement )block )function_definition )module
Set widgets on the Impact Functions Table 1 tab.
(module (function_definition (function_name_load_stylesheet) function_name_load_stylesheet (parameters (default_parameter (identifier_pyside) identifier_pyside (True) True )default_parameter )parameters (block (if_statement (identifier_pyside) identifier_pyside (block (import_statement (dotted_name (identifier_qdarkstyle) identifier_qdarkstyle (identifier_pyside_style_rc) identifier_pyside_style_rc )dotted_name )import_statement )block (else_clause (block (import_statement (dotted_name (identifier_qdarkstyle) identifier_qdarkstyle (identifier_pyqt_style_rc) identifier_pyqt_style_rc )dotted_name )import_statement )block )else_clause )if_statement (if_statement (not_operator (identifier_pyside) identifier_pyside )not_operator (block (import_from_statement (dotted_name (identifier_PyQt4) identifier_PyQt4 (identifier_QtCore) identifier_QtCore )dotted_name (dotted_name (identifier_QFile) identifier_QFile )dotted_name (dotted_name (identifier_QTextStream) identifier_QTextStream )dotted_name )import_from_statement )block (else_clause (block (import_from_statement (dotted_name (identifier_PySide) identifier_PySide (identifier_QtCore) identifier_QtCore )dotted_name (dotted_name (identifier_QFile) identifier_QFile )dotted_name (dotted_name (identifier_QTextStream) identifier_QTextStream )dotted_name )import_from_statement )block )else_clause )if_statement (expression_statement (assignment (identifier_f) identifier_f (call (identifier_QFile) identifier_QFile (argument_list (string_":qdarkstyle/style.qss") string_":qdarkstyle/style.qss" )argument_list )call )assignment )expression_statement (if_statement (not_operator (call (attribute (identifier_f) identifier_f (identifier_exists) identifier_exists )attribute (argument_list )argument_list )call )not_operator (block (expression_statement (call (attribute (call (identifier__logger) identifier__logger (argument_list )argument_list )call (identifier_error) identifier_error )attribute (argument_list (concatenated_string (string_"Unable to load stylesheet, file not found in ") string_"Unable to load stylesheet, file not found in " (string_"resources") string_"resources" )concatenated_string )argument_list )call )expression_statement (return_statement (string_"") string_"" )return_statement )block (else_clause (block (expression_statement (call (attribute (identifier_f) identifier_f (identifier_open) identifier_open )attribute (argument_list (binary_operator (attribute (identifier_QFile) identifier_QFile (identifier_ReadOnly) identifier_ReadOnly )attribute (attribute (identifier_QFile) identifier_QFile (identifier_Text) identifier_Text )attribute )binary_operator )argument_list )call )expression_statement (expression_statement (assignment (identifier_ts) identifier_ts (call (identifier_QTextStream) identifier_QTextStream (argument_list (identifier_f) identifier_f )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_stylesheet) identifier_stylesheet (call (attribute (identifier_ts) identifier_ts (identifier_readAll) identifier_readAll )attribute (argument_list )argument_list )call )assignment )expression_statement (if_statement (comparison_operator (call (attribute (call (attribute (identifier_platform) identifier_platform (identifier_system) identifier_system )attribute (argument_list )argument_list )call (identifier_lower) identifier_lower )attribute (argument_list )argument_list )call (string_'darwin') string_'darwin' )comparison_operator (block (expression_statement (assignment (identifier_mac_fix) identifier_mac_fix (augmented_assignment (identifier_stylesheet) identifier_stylesheet (identifier_mac_fix) identifier_mac_fix )augmented_assignment )assignment )expression_statement )block )if_statement (return_statement (identifier_stylesheet) identifier_stylesheet )return_statement )block )else_clause )if_statement )block )function_definition )module
Loads the stylesheet. Takes care of importing the rc module. :param pyside: True to load the pyside rc file, False to load the PyQt rc file :return the stylesheet string
(module (function_definition (function_name_set_image) function_name_set_image (parameters (identifier_self) identifier_self (default_parameter (identifier_image) identifier_image (None) None )default_parameter )parameters (block (if_statement (boolean_operator (comparison_operator (identifier_image) identifier_image (None) None )comparison_operator (comparison_operator (call (identifier_type) identifier_type (argument_list (identifier_image) identifier_image )argument_list )call (identifier_int) identifier_int )comparison_operator )boolean_operator (block (raise_statement (call (identifier_KPError) identifier_KPError (argument_list (string_"Need a new image number") string_"Need a new image number" )argument_list )call )raise_statement )block (else_clause (block (expression_statement (assignment (attribute (identifier_self) identifier_self (identifier_image) identifier_image )attribute (identifier_image) identifier_image )assignment )expression_statement (expression_statement (assignment (attribute (identifier_self) identifier_self (identifier_last_mod) identifier_last_mod )attribute (call (attribute (call (attribute (identifier_datetime) identifier_datetime (identifier_now) identifier_now )attribute (argument_list )argument_list )call (identifier_replace) identifier_replace )attribute (argument_list (keyword_argument (identifier_microsecond) identifier_microsecond (integer_0) integer_0 )keyword_argument )argument_list )call )assignment )expression_statement (return_statement (True) True )return_statement )block )else_clause )if_statement )block )function_definition )module
This method is used to set the image number. image must be an unsigned int.
(module (function_definition (function_name__extend_word) function_name__extend_word (parameters (identifier_self) identifier_self (identifier_word) identifier_word (identifier_length) identifier_length (default_parameter (identifier_prefix) identifier_prefix (integer_0) integer_0 )default_parameter (default_parameter (identifier_end) identifier_end (False) False )default_parameter (default_parameter (identifier_flatten) identifier_flatten (False) False )default_parameter )parameters (block (if_statement (comparison_operator (call (identifier_len) identifier_len (argument_list (identifier_word) identifier_word )argument_list )call (identifier_length) identifier_length )comparison_operator (block (if_statement (boolean_operator (identifier_end) identifier_end (comparison_operator (string_"<") string_"<" (subscript (identifier_self) identifier_self (subscript (identifier_word) identifier_word (unary_operator (integer_1) integer_1 )unary_operator )subscript )subscript )comparison_operator )boolean_operator (block (raise_statement (call (identifier_GenerationError) identifier_GenerationError (argument_list (binary_operator (identifier_word) identifier_word (string_" cannot be extended") string_" cannot be extended" )binary_operator )argument_list )call )raise_statement )block (else_clause (block (return_statement (identifier_word) identifier_word )return_statement )block )else_clause )if_statement )block (else_clause (block (expression_statement (assignment (identifier_exclude) identifier_exclude (set (string_"<") string_"<" )set )assignment )expression_statement (while_statement (True) True (block (expression_statement (assignment (identifier_choices) identifier_choices (call (attribute (identifier_self) identifier_self (identifier_weighted_choices) identifier_weighted_choices )attribute (argument_list (subscript (identifier_word) identifier_word (slice (conditional_expression (unary_operator (identifier_prefix) identifier_prefix )unary_operator (comparison_operator (identifier_prefix) identifier_prefix (integer_0) integer_0 )comparison_operator (integer_0) integer_0 )conditional_expression (colon) colon )slice )subscript (keyword_argument (identifier_exclude) identifier_exclude (identifier_exclude) identifier_exclude )keyword_argument (keyword_argument (identifier_flatten) identifier_flatten (identifier_flatten) identifier_flatten )keyword_argument )argument_list )call )assignment )expression_statement (if_statement (not_operator (identifier_choices) identifier_choices )not_operator (block (raise_statement (call (identifier_GenerationError) identifier_GenerationError (argument_list (binary_operator (identifier_word) identifier_word (string_" cannot be extended") string_" cannot be extended" )binary_operator )argument_list )call )raise_statement )block )if_statement (expression_statement (assignment (identifier_character) identifier_character (call (identifier_random_weighted_choice) identifier_random_weighted_choice (argument_list (identifier_choices) identifier_choices )argument_list )call )assignment )expression_statement (expression_statement (augmented_assignment (identifier_word) identifier_word (identifier_character) identifier_character )augmented_assignment )expression_statement (try_statement (block (expression_statement (assignment (identifier_word) identifier_word (call (attribute (identifier_self) identifier_self (identifier__extend_word) identifier__extend_word )attribute (argument_list (identifier_word) identifier_word (identifier_length) identifier_length (keyword_argument (identifier_prefix) identifier_prefix (identifier_prefix) identifier_prefix )keyword_argument (keyword_argument (identifier_end) identifier_end (identifier_end) identifier_end )keyword_argument (keyword_argument (identifier_flatten) identifier_flatten (identifier_flatten) identifier_flatten )keyword_argument )argument_list )call )assignment )expression_statement (return_statement (identifier_word) identifier_word )return_statement )block (except_clause (identifier_GenerationError) identifier_GenerationError (block (expression_statement (call (attribute (identifier_exclude) identifier_exclude (identifier_add) identifier_add )attribute (argument_list (identifier_character) identifier_character )argument_list )call )expression_statement (expression_statement (assignment (identifier_word) identifier_word (subscript (identifier_word) identifier_word (slice (colon) colon (unary_operator (integer_1) integer_1 )unary_operator )slice )subscript )assignment )expression_statement )block )except_clause )try_statement )block )while_statement )block )else_clause )if_statement )block )function_definition )module
Extend the given word with a random suffix up to length. :param length: the length of the extended word; >= len(word); :param prefix: if greater than 0, the maximum length of the prefix to consider to choose the next character; :param end: if True, the generated word ends as a word of table; :param flatten: whether or not consider the table as flattened; :return: a random word of length generated from table, extending word. :raises GenerationError: if the generated word cannot be extended to length.
(module (function_definition (function_name__merge) function_name__merge (parameters (identifier_x) identifier_x (identifier_y) identifier_y )parameters (block (expression_statement (assignment (identifier_merged) identifier_merged (dictionary (dictionary_splat (identifier_x) identifier_x )dictionary_splat (dictionary_splat (identifier_y) identifier_y )dictionary_splat )dictionary )assignment )expression_statement (expression_statement (assignment (identifier_xkeys) identifier_xkeys (call (attribute (identifier_x) identifier_x (identifier_keys) identifier_keys )attribute (argument_list )argument_list )call )assignment )expression_statement (for_statement (identifier_key) identifier_key (identifier_xkeys) identifier_xkeys (block (if_statement (boolean_operator (call (identifier_isinstance) identifier_isinstance (argument_list (subscript (identifier_x) identifier_x (identifier_key) identifier_key )subscript (identifier_dict) identifier_dict )argument_list )call (comparison_operator (identifier_key) identifier_key (identifier_y) identifier_y )comparison_operator )boolean_operator (block (expression_statement (assignment (subscript (identifier_merged) identifier_merged (identifier_key) identifier_key )subscript (call (identifier__merge) identifier__merge (argument_list (subscript (identifier_x) identifier_x (identifier_key) identifier_key )subscript (subscript (identifier_y) identifier_y (identifier_key) identifier_key )subscript )argument_list )call )assignment )expression_statement )block )if_statement )block )for_statement (return_statement (identifier_merged) identifier_merged )return_statement )block )function_definition )module
Merge two nested dictionaries. Overwrite values in x with values in y.
(module (function_definition (function_name_set_environment_variable) function_name_set_environment_variable (parameters (identifier_self) identifier_self (identifier_key) identifier_key (identifier_val) identifier_val )parameters (block (if_statement (comparison_operator (call (attribute (identifier_self) identifier_self (identifier_get_environment_variable) identifier_get_environment_variable )attribute (argument_list (identifier_key) identifier_key )argument_list )call (list (None) None (identifier_val) identifier_val )list )comparison_operator (block (expression_statement (assignment (subscript (subscript (attribute (identifier_self) identifier_self (identifier___dict__) identifier___dict__ )attribute (string_'environment_variables') string_'environment_variables' )subscript (identifier_key) identifier_key )subscript (identifier_val) identifier_val )assignment )expression_statement )block (else_clause (block (raise_statement (call (identifier_Contradiction) identifier_Contradiction (argument_list (binary_operator (string_"Could not set environment variable %s") string_"Could not set environment variable %s" (parenthesized_expression (identifier_key) identifier_key )parenthesized_expression )binary_operator )argument_list )call )raise_statement )block )else_clause )if_statement )block )function_definition )module
Sets a variable if that variable is not already set
(module (function_definition (function_name_call) function_name_call (parameters (identifier_command) identifier_command (default_parameter (identifier_collect_missing) identifier_collect_missing (False) False )default_parameter (default_parameter (identifier_silent) identifier_silent (True) True )default_parameter )parameters (block (expression_statement (identifier_r) identifier_r )expression_statement (return_statement (call (parenthesized_expression (conditional_expression (identifier__execCommand) identifier__execCommand (identifier_silent) identifier_silent (identifier_execCommand) identifier_execCommand )conditional_expression )parenthesized_expression (argument_list (call (attribute (identifier_shlex) identifier_shlex (identifier_split) identifier_split )attribute (argument_list (identifier_command) identifier_command )argument_list )call (identifier_collect_missing) identifier_collect_missing )argument_list )call )return_statement )block )function_definition )module
r"""Calls a task, as if it were called from the command line. Args: command (str): A route followed by params (as if it were entered in the shell). collect_missing (bool): Collects any missing argument for the command through the shell. Defaults to False. Returns: The return value of the called command.
(module (function_definition (function_name__sort_modules) function_name__sort_modules (parameters (identifier_mods) identifier_mods )parameters (block (function_definition (function_name_compare) function_name_compare (parameters (identifier_x) identifier_x (identifier_y) identifier_y )parameters (block (expression_statement (assignment (identifier_x) identifier_x (subscript (identifier_x) identifier_x (integer_1) integer_1 )subscript )assignment )expression_statement (expression_statement (assignment (identifier_y) identifier_y (subscript (identifier_y) identifier_y (integer_1) integer_1 )subscript )assignment )expression_statement (if_statement (comparison_operator (identifier_x) identifier_x (identifier_y) identifier_y )comparison_operator (block (return_statement (integer_0) integer_0 )return_statement )block )if_statement (if_statement (comparison_operator (attribute (identifier_y) identifier_y (identifier_stem) identifier_stem )attribute (string_"__init__.py") string_"__init__.py" )comparison_operator (block (return_statement (integer_1) integer_1 )return_statement )block )if_statement (if_statement (boolean_operator (comparison_operator (attribute (identifier_x) identifier_x (identifier_stem) identifier_stem )attribute (string_"__init__.py") string_"__init__.py" )comparison_operator (comparison_operator (identifier_x) identifier_x (identifier_y) identifier_y )comparison_operator )boolean_operator (block (return_statement (unary_operator (integer_1) integer_1 )unary_operator )return_statement )block )if_statement (return_statement (integer_1) integer_1 )return_statement )block )function_definition (return_statement (call (identifier_sorted) identifier_sorted (argument_list (identifier_mods) identifier_mods (keyword_argument (identifier_key) identifier_key (call (identifier_cmp_to_key) identifier_cmp_to_key (argument_list (identifier_compare) identifier_compare )argument_list )call )keyword_argument )argument_list )call )return_statement )block )function_definition )module
Always sort `index` or `README` as first filename in list.
(module (function_definition (function_name_update) function_name_update (parameters (identifier_self) identifier_self (identifier_byte_arr) identifier_byte_arr )parameters (block (if_statement (identifier_byte_arr) identifier_byte_arr (block (expression_statement (assignment (attribute (identifier_self) identifier_self (identifier_value) identifier_value )attribute (call (attribute (identifier_self) identifier_self (identifier_calculate) identifier_calculate )attribute (argument_list (identifier_byte_arr) identifier_byte_arr (attribute (identifier_self) identifier_self (identifier_value) identifier_value )attribute )argument_list )call )assignment )expression_statement )block )if_statement )block )function_definition )module
Read bytes and update the CRC computed.
(module (function_definition (function_name_match_patterns) function_name_match_patterns (parameters (identifier_codedata) identifier_codedata )parameters (block (expression_statement (assignment (identifier_ret) identifier_ret (dictionary )dictionary )assignment )expression_statement (for_statement (pattern_list (identifier_index1) identifier_index1 (identifier_pattern) identifier_pattern )pattern_list (call (identifier_enumerate) identifier_enumerate (argument_list (attribute (attribute (identifier_shaman) identifier_shaman (identifier_PatternMatcher) identifier_PatternMatcher )attribute (identifier_PATTERNS) identifier_PATTERNS )attribute )argument_list )call (block (expression_statement (call (identifier_print) identifier_print (argument_list (binary_operator (string_'Matching pattern %d "%s"') string_'Matching pattern %d "%s"' (tuple (binary_operator (identifier_index1) identifier_index1 (integer_1) integer_1 )binary_operator (identifier_pattern) identifier_pattern )tuple )binary_operator )argument_list )call )expression_statement (expression_statement (assignment (identifier_matcher) identifier_matcher (call (attribute (identifier_shaman) identifier_shaman (identifier_PatternMatcher) identifier_PatternMatcher )attribute (argument_list (identifier_pattern) identifier_pattern )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_tmp) identifier_tmp (dictionary )dictionary )assignment )expression_statement (for_statement (pattern_list (identifier_index2) identifier_index2 (tuple_pattern (identifier_language) identifier_language (identifier_code) identifier_code )tuple_pattern )pattern_list (call (identifier_enumerate) identifier_enumerate (argument_list (identifier_codedata) identifier_codedata )argument_list )call (block (if_statement (comparison_operator (identifier_language) identifier_language (attribute (identifier_shaman) identifier_shaman (identifier_SUPPORTING_LANGUAGES) identifier_SUPPORTING_LANGUAGES )attribute )comparison_operator (block (continue_statement )continue_statement )block )if_statement (if_statement (boolean_operator (comparison_operator (call (identifier_len) identifier_len (argument_list (identifier_code) identifier_code )argument_list )call (integer_20) integer_20 )comparison_operator (comparison_operator (call (identifier_len) identifier_len (argument_list (identifier_code) identifier_code )argument_list )call (integer_100000) integer_100000 )comparison_operator )boolean_operator (block (continue_statement )continue_statement )block )if_statement (if_statement (comparison_operator (identifier_language) identifier_language (identifier_tmp) identifier_tmp )comparison_operator (block (expression_statement (assignment (subscript (identifier_tmp) identifier_tmp (identifier_language) identifier_language )subscript (list )list )assignment )expression_statement )block )if_statement (expression_statement (assignment (identifier_ratio) identifier_ratio (call (attribute (identifier_matcher) identifier_matcher (identifier_getratio) identifier_getratio )attribute (argument_list (identifier_code) identifier_code )argument_list )call )assignment )expression_statement (expression_statement (call (attribute (subscript (identifier_tmp) identifier_tmp (identifier_language) identifier_language )subscript (identifier_append) identifier_append )attribute (argument_list (identifier_ratio) identifier_ratio )argument_list )call )expression_statement (expression_statement (call (identifier_print) identifier_print (argument_list (binary_operator (string_'Matching patterns %d/%d ') string_'Matching patterns %d/%d ' (tuple (identifier_index2) identifier_index2 (call (identifier_len) identifier_len (argument_list (identifier_codedata) identifier_codedata )argument_list )call )tuple )binary_operator (keyword_argument (identifier_end) identifier_end (string_'\r') string_'\r' )keyword_argument )argument_list )call )expression_statement )block )for_statement (expression_statement (assignment (subscript (identifier_ret) identifier_ret (identifier_pattern) identifier_pattern )subscript (dictionary )dictionary )assignment )expression_statement (for_statement (pattern_list (identifier_language) identifier_language (identifier_data) identifier_data )pattern_list (call (attribute (identifier_tmp) identifier_tmp (identifier_items) identifier_items )attribute (argument_list )argument_list )call (block (expression_statement (assignment (subscript (subscript (identifier_ret) identifier_ret (identifier_pattern) identifier_pattern )subscript (identifier_language) identifier_language )subscript (binary_operator (call (identifier_sum) identifier_sum (argument_list (subscript (identifier_tmp) identifier_tmp (identifier_language) identifier_language )subscript )argument_list )call (call (identifier_max) identifier_max (argument_list (call (identifier_len) identifier_len (argument_list (subscript (identifier_tmp) identifier_tmp (identifier_language) identifier_language )subscript )argument_list )call (integer_1) integer_1 )argument_list )call )binary_operator )assignment )expression_statement )block )for_statement )block )for_statement (expression_statement (call (identifier_print) identifier_print (argument_list (string_'Matching patterns completed ') string_'Matching patterns completed ' )argument_list )call )expression_statement (return_statement (identifier_ret) identifier_ret )return_statement )block )function_definition )module
Match patterns by shaman.PatternMatcher Get average ratio of pattern and language
(module (function_definition (function_name_find_triangles) function_name_find_triangles (parameters (identifier_self) identifier_self )parameters (block (return_statement (call (identifier_list) identifier_list (argument_list (call (identifier_filter) identifier_filter (argument_list (lambda (lambda_parameters (identifier_x) identifier_x )lambda_parameters (comparison_operator (call (identifier_len) identifier_len (argument_list (identifier_x) identifier_x )argument_list )call (integer_3) integer_3 )comparison_operator )lambda (call (attribute (identifier_nx) identifier_nx (identifier_find_cliques) identifier_find_cliques )attribute (argument_list (attribute (identifier_self) identifier_self (identifier_model) identifier_model )attribute )argument_list )call )argument_list )call )argument_list )call )return_statement )block )function_definition )module
Finds all the triangles present in the given model Examples -------- >>> from pgmpy.models import MarkovModel >>> from pgmpy.factors.discrete import DiscreteFactor >>> from pgmpy.inference import Mplp >>> mm = MarkovModel() >>> mm.add_nodes_from(['x1', 'x2', 'x3', 'x4', 'x5', 'x6', 'x7']) >>> mm.add_edges_from([('x1', 'x3'), ('x1', 'x4'), ('x2', 'x4'), ... ('x2', 'x5'), ('x3', 'x6'), ('x4', 'x6'), ... ('x4', 'x7'), ('x5', 'x7')]) >>> phi = [DiscreteFactor(edge, [2, 2], np.random.rand(4)) for edge in mm.edges()] >>> mm.add_factors(*phi) >>> mplp = Mplp(mm) >>> mplp.find_triangles()
(module (function_definition (function_name_write_numeric) function_name_write_numeric (parameters (identifier_fmt) identifier_fmt (identifier_value) identifier_value (identifier_buff) identifier_buff (default_parameter (identifier_byteorder) identifier_byteorder (string_'big') string_'big' )default_parameter )parameters (block (try_statement (block (expression_statement (call (attribute (identifier_buff) identifier_buff (identifier_write) identifier_write )attribute (argument_list (call (attribute (subscript (identifier_fmt) identifier_fmt (identifier_byteorder) identifier_byteorder )subscript (identifier_pack) identifier_pack )attribute (argument_list (identifier_value) identifier_value )argument_list )call )argument_list )call )expression_statement )block (except_clause (as_pattern (identifier_KeyError) identifier_KeyError (as_pattern_target (identifier_exc) identifier_exc )as_pattern_target )as_pattern (block (raise_statement (call (identifier_ValueError) identifier_ValueError (argument_list (string_'Invalid byte order') string_'Invalid byte order' )argument_list )call (identifier_exc) identifier_exc )raise_statement )block )except_clause )try_statement )block )function_definition )module
Write a numeric value to a file-like object.
(module (function_definition (function_name_fetch) function_name_fetch (parameters (identifier_self) identifier_self )parameters (block (expression_statement (assignment (identifier_params) identifier_params (call (attribute (identifier_values) identifier_values (identifier_of) identifier_of )attribute (argument_list (dictionary )dictionary )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_payload) identifier_payload (call (attribute (attribute (identifier_self) identifier_self (identifier__version) identifier__version )attribute (identifier_fetch) identifier_fetch )attribute (argument_list (string_'GET') string_'GET' (attribute (identifier_self) identifier_self (identifier__uri) identifier__uri )attribute (keyword_argument (identifier_params) identifier_params (identifier_params) identifier_params )keyword_argument )argument_list )call )assignment )expression_statement (return_statement (call (identifier_EntityInstance) identifier_EntityInstance (argument_list (attribute (identifier_self) identifier_self (identifier__version) identifier__version )attribute (identifier_payload) identifier_payload (keyword_argument (identifier_service_sid) identifier_service_sid (subscript (attribute (identifier_self) identifier_self (identifier__solution) identifier__solution )attribute (string_'service_sid') string_'service_sid' )subscript )keyword_argument (keyword_argument (identifier_identity) identifier_identity (subscript (attribute (identifier_self) identifier_self (identifier__solution) identifier__solution )attribute (string_'identity') string_'identity' )subscript )keyword_argument )argument_list )call )return_statement )block )function_definition )module
Fetch a EntityInstance :returns: Fetched EntityInstance :rtype: twilio.rest.authy.v1.service.entity.EntityInstance
(module (function_definition (function_name_ft1file) function_name_ft1file (parameters (identifier_self) identifier_self (dictionary_splat_pattern (identifier_kwargs) identifier_kwargs )dictionary_splat_pattern )parameters (block (expression_statement (assignment (identifier_kwargs_copy) identifier_kwargs_copy (call (attribute (attribute (identifier_self) identifier_self (identifier_base_dict) identifier_base_dict )attribute (identifier_copy) identifier_copy )attribute (argument_list )argument_list )call )assignment )expression_statement (expression_statement (call (attribute (identifier_kwargs_copy) identifier_kwargs_copy (identifier_update) identifier_update )attribute (argument_list (dictionary_splat (identifier_kwargs) identifier_kwargs )dictionary_splat )argument_list )call )expression_statement (expression_statement (assignment (subscript (identifier_kwargs_copy) identifier_kwargs_copy (string_'dataset') string_'dataset' )subscript (call (attribute (identifier_kwargs) identifier_kwargs (identifier_get) identifier_get )attribute (argument_list (string_'dataset') string_'dataset' (call (attribute (identifier_self) identifier_self (identifier_dataset) identifier_dataset )attribute (argument_list (dictionary_splat (identifier_kwargs) identifier_kwargs )dictionary_splat )argument_list )call )argument_list )call )assignment )expression_statement (expression_statement (call (attribute (identifier_self) identifier_self (identifier__replace_none) identifier__replace_none )attribute (argument_list (identifier_kwargs_copy) identifier_kwargs_copy )argument_list )call )expression_statement (expression_statement (assignment (identifier_localpath) identifier_localpath (call (attribute (attribute (identifier_NameFactory) identifier_NameFactory (identifier_ft1file_format) identifier_ft1file_format )attribute (identifier_format) identifier_format )attribute (argument_list (dictionary_splat (identifier_kwargs_copy) identifier_kwargs_copy )dictionary_splat )argument_list )call )assignment )expression_statement (if_statement (call (attribute (identifier_kwargs) identifier_kwargs (identifier_get) identifier_get )attribute (argument_list (string_'fullpath') string_'fullpath' (False) False )argument_list )call (block (return_statement (call (attribute (identifier_self) identifier_self (identifier_fullpath) identifier_fullpath )attribute (argument_list (keyword_argument (identifier_localpath) identifier_localpath (identifier_localpath) identifier_localpath )keyword_argument )argument_list )call )return_statement )block )if_statement (return_statement (identifier_localpath) identifier_localpath )return_statement )block )function_definition )module
return the name of the input ft1 file list
(module (function_definition (function_name_get_terms) function_name_get_terms (parameters (identifier_self) identifier_self (default_parameter (identifier_field) identifier_field (None) None )default_parameter )parameters (block (if_statement (not_operator (identifier_field) identifier_field )not_operator (block (raise_statement (call (identifier_AttributeError) identifier_AttributeError (argument_list (string_"Please provide field to apply aggregation to!") string_"Please provide field to apply aggregation to!" )argument_list )call )raise_statement )block )if_statement (expression_statement (assignment (identifier_agg) identifier_agg (call (identifier_A) identifier_A (argument_list (string_"terms") string_"terms" (keyword_argument (identifier_field) identifier_field (identifier_field) identifier_field )keyword_argument (keyword_argument (identifier_size) identifier_size (attribute (identifier_self) identifier_self (identifier_size) identifier_size )attribute )keyword_argument (keyword_argument (identifier_order) identifier_order (dictionary (pair (string_"_count") string_"_count" (string_"desc") string_"desc" )pair )dictionary )keyword_argument )argument_list )call )assignment )expression_statement (expression_statement (assignment (subscript (attribute (identifier_self) identifier_self (identifier_aggregations) identifier_aggregations )attribute (binary_operator (string_'terms_') string_'terms_' (identifier_field) identifier_field )binary_operator )subscript (identifier_agg) identifier_agg )assignment )expression_statement (return_statement (identifier_self) identifier_self )return_statement )block )function_definition )module
Create a terms aggregation object and add it to the aggregation dict :param field: the field present in the index that is to be aggregated :returns: self, which allows the method to be chainable with the other methods
(module (function_definition (function_name_put) function_name_put (parameters (identifier_self) identifier_self (identifier_item) identifier_item (default_parameter (identifier_block) identifier_block (True) True )default_parameter (default_parameter (identifier_timeout) identifier_timeout (None) None )default_parameter )parameters (block (return_statement (call (attribute (attribute (identifier_self) identifier_self (identifier__queue) identifier__queue )attribute (identifier_put) identifier_put )attribute (argument_list (identifier_item) identifier_item (identifier_block) identifier_block (identifier_timeout) identifier_timeout )argument_list )call )return_statement )block )function_definition )module
Put item into underlying queue.
(module (function_definition (function_name_search) function_name_search (parameters (identifier_self) identifier_self (identifier_name) identifier_name (identifier_value) identifier_value )parameters (block (expression_statement (assignment (identifier_partial) identifier_partial (None) None )assignment )expression_statement (expression_statement (assignment (identifier_header_name_search_result) identifier_header_name_search_result (call (attribute (attribute (identifier_CocaineHeaders) identifier_CocaineHeaders (identifier_STATIC_TABLE_MAPPING) identifier_STATIC_TABLE_MAPPING )attribute (identifier_get) identifier_get )attribute (argument_list (identifier_name) identifier_name )argument_list )call )assignment )expression_statement (if_statement (identifier_header_name_search_result) identifier_header_name_search_result (block (expression_statement (assignment (identifier_index) identifier_index (call (attribute (subscript (identifier_header_name_search_result) identifier_header_name_search_result (integer_1) integer_1 )subscript (identifier_get) identifier_get )attribute (argument_list (identifier_value) identifier_value )argument_list )call )assignment )expression_statement (if_statement (comparison_operator (identifier_index) identifier_index (None) None )comparison_operator (block (return_statement (expression_list (identifier_index) identifier_index (identifier_name) identifier_name (identifier_value) identifier_value )expression_list )return_statement )block )if_statement (expression_statement (assignment (identifier_partial) identifier_partial (tuple (subscript (identifier_header_name_search_result) identifier_header_name_search_result (integer_0) integer_0 )subscript (identifier_name) identifier_name (None) None )tuple )assignment )expression_statement )block )if_statement (expression_statement (assignment (identifier_offset) identifier_offset (call (identifier_len) identifier_len (argument_list (attribute (identifier_CocaineHeaders) identifier_CocaineHeaders (identifier_STATIC_TABLE) identifier_STATIC_TABLE )attribute )argument_list )call )assignment )expression_statement (for_statement (tuple_pattern (identifier_i) identifier_i (tuple_pattern (identifier_n) identifier_n (identifier_v) identifier_v )tuple_pattern )tuple_pattern (call (identifier_enumerate) identifier_enumerate (argument_list (attribute (identifier_self) identifier_self (identifier_dynamic_entries) identifier_dynamic_entries )attribute )argument_list )call (block (if_statement (comparison_operator (identifier_n) identifier_n (identifier_name) identifier_name )comparison_operator (block (if_statement (comparison_operator (identifier_v) identifier_v (identifier_value) identifier_value )comparison_operator (block (return_statement (expression_list (binary_operator (binary_operator (identifier_i) identifier_i (identifier_offset) identifier_offset )binary_operator (integer_1) integer_1 )binary_operator (identifier_n) identifier_n (identifier_v) identifier_v )expression_list )return_statement )block (elif_clause (comparison_operator (identifier_partial) identifier_partial (None) None )comparison_operator (block (expression_statement (assignment (identifier_partial) identifier_partial (tuple (binary_operator (binary_operator (identifier_i) identifier_i (identifier_offset) identifier_offset )binary_operator (integer_1) integer_1 )binary_operator (identifier_n) identifier_n (None) None )tuple )assignment )expression_statement )block )elif_clause )if_statement )block )if_statement )block )for_statement (return_statement (identifier_partial) identifier_partial )return_statement )block )function_definition )module
Searches the table for the entry specified by name and value Returns one of the following: - ``None``, no match at all - ``(index, name, None)`` for partial matches on name only. - ``(index, name, value)`` for perfect matches.
(module (function_definition (function_name_clear_rr_ce_entries) function_name_clear_rr_ce_entries (parameters (identifier_self) identifier_self )parameters (block (if_statement (not_operator (attribute (identifier_self) identifier_self (identifier__initialized) identifier__initialized )attribute )not_operator (block (raise_statement (call (attribute (identifier_pycdlibexception) identifier_pycdlibexception (identifier_PyCdlibInternalError) identifier_PyCdlibInternalError )attribute (argument_list (string_'This Primary Volume Descriptor is not yet initialized') string_'This Primary Volume Descriptor is not yet initialized' )argument_list )call )raise_statement )block )if_statement (for_statement (identifier_block) identifier_block (attribute (identifier_self) identifier_self (identifier_rr_ce_blocks) identifier_rr_ce_blocks )attribute (block (expression_statement (call (attribute (identifier_block) identifier_block (identifier_set_extent_location) identifier_set_extent_location )attribute (argument_list (unary_operator (integer_1) integer_1 )unary_operator )argument_list )call )expression_statement )block )for_statement )block )function_definition )module
A method to clear out all of the extent locations of all Rock Ridge Continuation Entries that the PVD is tracking. This can be used to reset all data before assigning new data. Parameters: None. Returns: Nothing.
(module (function_definition (function_name_arches) function_name_arches (parameters (identifier_self) identifier_self )parameters (block (if_statement (comparison_operator (attribute (identifier_self) identifier_self (identifier_method) identifier_method )attribute (string_'image') string_'image' )comparison_operator (block (return_statement (subscript (attribute (identifier_self) identifier_self (identifier_params) identifier_params )attribute (integer_2) integer_2 )subscript )return_statement )block )if_statement (if_statement (attribute (identifier_self) identifier_self (identifier_arch) identifier_arch )attribute (block (return_statement (list (attribute (identifier_self) identifier_self (identifier_arch) identifier_arch )attribute )list )return_statement )block )if_statement (return_statement (list )list )return_statement )block )function_definition )module
Return a list of architectures for this task. :returns: a list of arch strings (eg ["ppc64le", "x86_64"]). The list is empty if this task has no arches associated with it.
(module (function_definition (function_name_rotation_matrix) function_name_rotation_matrix (parameters (identifier_d) identifier_d )parameters (block (expression_statement (assignment (identifier_sin_angle) identifier_sin_angle (call (attribute (attribute (identifier_np) identifier_np (identifier_linalg) identifier_linalg )attribute (identifier_norm) identifier_norm )attribute (argument_list (identifier_d) identifier_d )argument_list )call )assignment )expression_statement (if_statement (comparison_operator (identifier_sin_angle) identifier_sin_angle (integer_0) integer_0 )comparison_operator (block (return_statement (call (attribute (identifier_np) identifier_np (identifier_identity) identifier_identity )attribute (argument_list (integer_3) integer_3 )argument_list )call )return_statement )block )if_statement (expression_statement (augmented_assignment (identifier_d) identifier_d (identifier_sin_angle) identifier_sin_angle )augmented_assignment )expression_statement (expression_statement (assignment (identifier_eye) identifier_eye (call (attribute (identifier_np) identifier_np (identifier_eye) identifier_eye )attribute (argument_list (integer_3) integer_3 )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_ddt) identifier_ddt (call (attribute (identifier_np) identifier_np (identifier_outer) identifier_outer )attribute (argument_list (identifier_d) identifier_d (identifier_d) identifier_d )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_skew) identifier_skew (call (attribute (identifier_np) identifier_np (identifier_array) identifier_array )attribute (argument_list (list (list (integer_0) integer_0 (subscript (identifier_d) identifier_d (integer_2) integer_2 )subscript (unary_operator (subscript (identifier_d) identifier_d (integer_1) integer_1 )subscript )unary_operator )list (list (unary_operator (subscript (identifier_d) identifier_d (integer_2) integer_2 )subscript )unary_operator (integer_0) integer_0 (subscript (identifier_d) identifier_d (integer_0) integer_0 )subscript )list (list (subscript (identifier_d) identifier_d (integer_1) integer_1 )subscript (unary_operator (subscript (identifier_d) identifier_d (integer_0) integer_0 )subscript )unary_operator (integer_0) integer_0 )list )list (keyword_argument (identifier_dtype) identifier_dtype (attribute (identifier_np) identifier_np (identifier_float64) identifier_float64 )attribute )keyword_argument )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_M) identifier_M (binary_operator (binary_operator (identifier_ddt) identifier_ddt (binary_operator (call (attribute (identifier_np) identifier_np (identifier_sqrt) identifier_sqrt )attribute (argument_list (binary_operator (integer_1) integer_1 (binary_operator (identifier_sin_angle) identifier_sin_angle (integer_2) integer_2 )binary_operator )binary_operator )argument_list )call (parenthesized_expression (binary_operator (identifier_eye) identifier_eye (identifier_ddt) identifier_ddt )binary_operator )parenthesized_expression )binary_operator )binary_operator (binary_operator (identifier_sin_angle) identifier_sin_angle (identifier_skew) identifier_skew )binary_operator )binary_operator )assignment )expression_statement (return_statement (identifier_M) identifier_M )return_statement )block )function_definition )module
Calculates a rotation matrix given a vector d. The direction of d corresponds to the rotation axis. The length of d corresponds to the sin of the angle of rotation. Variant of: http://mail.scipy.org/pipermail/numpy-discussion/2009-March/040806.html
(module (function_definition (function_name_Run) function_name_Run (parameters (identifier_self) identifier_self (identifier_args) identifier_args )parameters (block (try_statement (block (expression_statement (assignment (identifier_directory) identifier_directory (call (attribute (identifier_vfs) identifier_vfs (identifier_VFSOpen) identifier_VFSOpen )attribute (argument_list (attribute (identifier_args) identifier_args (identifier_pathspec) identifier_pathspec )attribute (keyword_argument (identifier_progress_callback) identifier_progress_callback (attribute (identifier_self) identifier_self (identifier_Progress) identifier_Progress )attribute )keyword_argument )argument_list )call )assignment )expression_statement )block (except_clause (as_pattern (tuple (identifier_IOError) identifier_IOError (identifier_OSError) identifier_OSError )tuple (as_pattern_target (identifier_e) identifier_e )as_pattern_target )as_pattern (block (expression_statement (call (attribute (identifier_self) identifier_self (identifier_SetStatus) identifier_SetStatus )attribute (argument_list (attribute (attribute (attribute (identifier_rdf_flows) identifier_rdf_flows (identifier_GrrStatus) identifier_GrrStatus )attribute (identifier_ReturnedStatus) identifier_ReturnedStatus )attribute (identifier_IOERROR) identifier_IOERROR )attribute (identifier_e) identifier_e )argument_list )call )expression_statement (return_statement )return_statement )block )except_clause )try_statement (expression_statement (assignment (identifier_files) identifier_files (call (identifier_list) identifier_list (argument_list (call (attribute (identifier_directory) identifier_directory (identifier_ListFiles) identifier_ListFiles )attribute (argument_list )argument_list )call )argument_list )call )assignment )expression_statement (expression_statement (call (attribute (identifier_files) identifier_files (identifier_sort) identifier_sort )attribute (argument_list (keyword_argument (identifier_key) identifier_key (lambda (lambda_parameters (identifier_x) identifier_x )lambda_parameters (attribute (attribute (identifier_x) identifier_x (identifier_pathspec) identifier_pathspec )attribute (identifier_path) identifier_path )attribute )lambda )keyword_argument )argument_list )call )expression_statement (for_statement (identifier_response) identifier_response (identifier_files) identifier_files (block (expression_statement (call (attribute (identifier_self) identifier_self (identifier_SendReply) identifier_SendReply )attribute (argument_list (identifier_response) identifier_response )argument_list )call )expression_statement )block )for_statement )block )function_definition )module
Lists a directory.
(module (function_definition (function_name__get_cache_key) function_name__get_cache_key (parameters (identifier_self) identifier_self (identifier_args) identifier_args (identifier_kwargs) identifier_kwargs )parameters (block (expression_statement (assignment (identifier_hash_input) identifier_hash_input (call (attribute (identifier_json) identifier_json (identifier_dumps) identifier_dumps )attribute (argument_list (dictionary (pair (string_'name') string_'name' (attribute (identifier_self) identifier_self (identifier_name) identifier_name )attribute )pair (pair (string_'args') string_'args' (identifier_args) identifier_args )pair (pair (string_'kwargs') string_'kwargs' (identifier_kwargs) identifier_kwargs )pair )dictionary (keyword_argument (identifier_sort_keys) identifier_sort_keys (True) True )keyword_argument )argument_list )call )assignment )expression_statement (return_statement (call (attribute (call (attribute (identifier_hashlib) identifier_hashlib (identifier_md5) identifier_md5 )attribute (argument_list (identifier_hash_input) identifier_hash_input )argument_list )call (identifier_hexdigest) identifier_hexdigest )attribute (argument_list )argument_list )call )return_statement )block )function_definition )module
Returns key to be used in cache
(module (function_definition (function_name__build_circle) function_name__build_circle (parameters (identifier_self) identifier_self )parameters (block (expression_statement (assignment (identifier_total_weight) identifier_total_weight (integer_0) integer_0 )assignment )expression_statement (for_statement (identifier_node) identifier_node (attribute (identifier_self) identifier_self (identifier__nodes) identifier__nodes )attribute (block (expression_statement (augmented_assignment (identifier_total_weight) identifier_total_weight (call (attribute (attribute (identifier_self) identifier_self (identifier__weights) identifier__weights )attribute (identifier_get) identifier_get )attribute (argument_list (identifier_node) identifier_node (integer_1) integer_1 )argument_list )call )augmented_assignment )expression_statement )block )for_statement (for_statement (identifier_node) identifier_node (attribute (identifier_self) identifier_self (identifier__nodes) identifier__nodes )attribute (block (expression_statement (assignment (identifier_weight) identifier_weight (call (attribute (attribute (identifier_self) identifier_self (identifier__weights) identifier__weights )attribute (identifier_get) identifier_get )attribute (argument_list (identifier_node) identifier_node (integer_1) integer_1 )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_ks) identifier_ks (call (attribute (identifier_math) identifier_math (identifier_floor) identifier_floor )attribute (argument_list (binary_operator (parenthesized_expression (binary_operator (binary_operator (integer_40) integer_40 (call (identifier_len) identifier_len (argument_list (attribute (identifier_self) identifier_self (identifier__nodes) identifier__nodes )attribute )argument_list )call )binary_operator (identifier_weight) identifier_weight )binary_operator )parenthesized_expression (identifier_total_weight) identifier_total_weight )binary_operator )argument_list )call )assignment )expression_statement (for_statement (identifier_i) identifier_i (call (identifier_xrange) identifier_xrange (argument_list (integer_0) integer_0 (call (identifier_int) identifier_int (argument_list (identifier_ks) identifier_ks )argument_list )call )argument_list )call (block (expression_statement (assignment (identifier_b_key) identifier_b_key (call (attribute (identifier_self) identifier_self (identifier__md5_digest) identifier__md5_digest )attribute (argument_list (binary_operator (string_'%s-%s-salt') string_'%s-%s-salt' (tuple (identifier_node) identifier_node (identifier_i) identifier_i )tuple )binary_operator )argument_list )call )assignment )expression_statement (for_statement (identifier_l) identifier_l (call (identifier_xrange) identifier_xrange (argument_list (integer_0) integer_0 (integer_4) integer_4 )argument_list )call (block (expression_statement (assignment (identifier_key) identifier_key (parenthesized_expression (binary_operator (binary_operator (binary_operator (parenthesized_expression (binary_operator (subscript (identifier_b_key) identifier_b_key (binary_operator (integer_3) integer_3 (binary_operator (identifier_l) identifier_l (integer_4) integer_4 )binary_operator )binary_operator )subscript (integer_24) integer_24 )binary_operator )parenthesized_expression (parenthesized_expression (binary_operator (subscript (identifier_b_key) identifier_b_key (binary_operator (integer_2) integer_2 (binary_operator (identifier_l) identifier_l (integer_4) integer_4 )binary_operator )binary_operator )subscript (integer_16) integer_16 )binary_operator )parenthesized_expression )binary_operator (parenthesized_expression (binary_operator (subscript (identifier_b_key) identifier_b_key (binary_operator (integer_1) integer_1 (binary_operator (identifier_l) identifier_l (integer_4) integer_4 )binary_operator )binary_operator )subscript (integer_8) integer_8 )binary_operator )parenthesized_expression )binary_operator (subscript (identifier_b_key) identifier_b_key (binary_operator (identifier_l) identifier_l (integer_4) integer_4 )binary_operator )subscript )binary_operator )parenthesized_expression )assignment )expression_statement (expression_statement (assignment (subscript (attribute (identifier_self) identifier_self (identifier__hashring) identifier__hashring )attribute (identifier_key) identifier_key )subscript (identifier_node) identifier_node )assignment )expression_statement (expression_statement (call (attribute (attribute (identifier_self) identifier_self (identifier__sorted_keys) identifier__sorted_keys )attribute (identifier_append) identifier_append )attribute (argument_list (identifier_key) identifier_key )argument_list )call )expression_statement )block )for_statement )block )for_statement )block )for_statement (expression_statement (call (attribute (attribute (identifier_self) identifier_self (identifier__sorted_keys) identifier__sorted_keys )attribute (identifier_sort) identifier_sort )attribute (argument_list )argument_list )call )expression_statement )block )function_definition )module
Creates hash ring.
(module (function_definition (function_name_get_single_payload) function_name_get_single_payload (parameters (identifier_self) identifier_self (identifier_query_obj) identifier_query_obj )parameters (block (expression_statement (assignment (identifier_payload) identifier_payload (call (attribute (identifier_self) identifier_self (identifier_get_df_payload) identifier_get_df_payload )attribute (argument_list (identifier_query_obj) identifier_query_obj )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_df) identifier_df (call (attribute (identifier_payload) identifier_payload (identifier_get) identifier_get )attribute (argument_list (string_'df') string_'df' )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_status) identifier_status (call (attribute (identifier_payload) identifier_payload (identifier_get) identifier_get )attribute (argument_list (string_'status') string_'status' )argument_list )call )assignment )expression_statement (if_statement (comparison_operator (identifier_status) identifier_status (attribute (attribute (identifier_utils) identifier_utils (identifier_QueryStatus) identifier_QueryStatus )attribute (identifier_FAILED) identifier_FAILED )attribute )comparison_operator (block (if_statement (boolean_operator (comparison_operator (identifier_df) identifier_df (None) None )comparison_operator (attribute (identifier_df) identifier_df (identifier_empty) identifier_empty )attribute )boolean_operator (block (expression_statement (assignment (subscript (identifier_payload) identifier_payload (string_'error') string_'error' )subscript (string_'No data') string_'No data' )assignment )expression_statement )block (else_clause (block (expression_statement (assignment (subscript (identifier_payload) identifier_payload (string_'data') string_'data' )subscript (call (attribute (identifier_self) identifier_self (identifier_get_data) identifier_get_data )attribute (argument_list (identifier_df) identifier_df )argument_list )call )assignment )expression_statement )block )else_clause )if_statement )block )if_statement (if_statement (comparison_operator (string_'df') string_'df' (identifier_payload) identifier_payload )comparison_operator (block (delete_statement (subscript (identifier_payload) identifier_payload (string_'df') string_'df' )subscript )delete_statement )block )if_statement (return_statement (identifier_payload) identifier_payload )return_statement )block )function_definition )module
Returns a payload of metadata and data
(module (function_definition (function_name_make_url) function_name_make_url (parameters (identifier_self) identifier_self (identifier_method) identifier_method )parameters (block (expression_statement (assignment (identifier_token) identifier_token (subscript (call (attribute (identifier_self) identifier_self (identifier_settings) identifier_settings )attribute (argument_list )argument_list )call (string_'token') string_'token' )subscript )assignment )expression_statement (return_statement (call (attribute (identifier_TELEGRAM_URL) identifier_TELEGRAM_URL (identifier_format) identifier_format )attribute (argument_list (keyword_argument (identifier_token) identifier_token (call (identifier_quote) identifier_quote (argument_list (identifier_token) identifier_token )argument_list )call )keyword_argument (keyword_argument (identifier_method) identifier_method (call (identifier_quote) identifier_quote (argument_list (identifier_method) identifier_method )argument_list )call )keyword_argument )argument_list )call )return_statement )block )function_definition )module
Generate a Telegram URL for this bot.
(module (function_definition (function_name_calculate_windows) function_name_calculate_windows (parameters (identifier_self) identifier_self (dictionary_splat_pattern (identifier_kwargs) identifier_kwargs )dictionary_splat_pattern )parameters (block (expression_statement (assignment (identifier_windows) identifier_windows (call (identifier_find_windows) identifier_find_windows (argument_list (attribute (identifier_self) identifier_self (identifier_elements) identifier_elements )attribute (attribute (identifier_self) identifier_self (identifier_coordinates) identifier_coordinates )attribute (dictionary_splat (identifier_kwargs) identifier_kwargs )dictionary_splat )argument_list )call )assignment )expression_statement (if_statement (identifier_windows) identifier_windows (block (expression_statement (call (attribute (attribute (identifier_self) identifier_self (identifier_properties) identifier_properties )attribute (identifier_update) identifier_update )attribute (argument_list (dictionary (pair (string_'windows') string_'windows' (dictionary (pair (string_'diameters') string_'diameters' (subscript (identifier_windows) identifier_windows (integer_0) integer_0 )subscript )pair (pair (string_'centre_of_mass') string_'centre_of_mass' (subscript (identifier_windows) identifier_windows (integer_1) integer_1 )subscript )pair )dictionary )pair )dictionary )argument_list )call )expression_statement (return_statement (subscript (identifier_windows) identifier_windows (integer_0) integer_0 )subscript )return_statement )block (else_clause (block (expression_statement (call (attribute (attribute (identifier_self) identifier_self (identifier_properties) identifier_properties )attribute (identifier_update) identifier_update )attribute (argument_list (dictionary (pair (string_'windows') string_'windows' (dictionary (pair (string_'diameters') string_'diameters' (None) None )pair (pair (string_'centre_of_mass') string_'centre_of_mass' (None) None )pair )dictionary )pair )dictionary )argument_list )call )expression_statement )block )else_clause )if_statement (return_statement (None) None )return_statement )block )function_definition )module
Return the diameters of all windows in a molecule. This function first finds and then measures the diameters of all the window in the molecule. Returns ------- :class:`numpy.array` An array of windows' diameters. :class:`NoneType` If no windows were found.
(module (function_definition (function_name_pass_job) function_name_pass_job (parameters (typed_parameter (identifier_db) identifier_db (type (identifier_JobDB) identifier_JobDB )type )typed_parameter (typed_parameter (identifier_result_queue) identifier_result_queue (type (identifier_Queue) identifier_Queue )type )typed_parameter (default_parameter (identifier_always_cache) identifier_always_cache (False) False )default_parameter )parameters (block (decorated_definition (decorator (identifier_pull) identifier_pull )decorator (function_definition (function_name_pass_job_stream) function_name_pass_job_stream (parameters (identifier_job_source) identifier_job_source )parameters (block (expression_statement (assignment (identifier_result_sink) identifier_result_sink (call (attribute (identifier_result_queue) identifier_result_queue (identifier_sink) identifier_sink )attribute (argument_list )argument_list )call )assignment )expression_statement (for_statement (identifier_message) identifier_message (call (identifier_job_source) identifier_job_source (argument_list )argument_list )call (block (if_statement (comparison_operator (identifier_message) identifier_message (identifier_EndOfQueue) identifier_EndOfQueue )comparison_operator (block (return_statement )return_statement )block )if_statement (expression_statement (assignment (pattern_list (identifier_key) identifier_key (identifier_job) identifier_job )pattern_list (identifier_message) identifier_message )assignment )expression_statement (if_statement (boolean_operator (identifier_always_cache) identifier_always_cache (parenthesized_expression (comparison_operator (string_'store') string_'store' (attribute (identifier_job) identifier_job (identifier_hints) identifier_hints )attribute )comparison_operator )parenthesized_expression )boolean_operator (block (expression_statement (assignment (pattern_list (identifier_status) identifier_status (identifier_retrieved_result) identifier_retrieved_result )pattern_list (call (attribute (identifier_db) identifier_db (identifier_add_job_to_db) identifier_add_job_to_db )attribute (argument_list (identifier_key) identifier_key (identifier_job) identifier_job )argument_list )call )assignment )expression_statement (if_statement (comparison_operator (identifier_status) identifier_status (string_'retrieved') string_'retrieved' )comparison_operator (block (expression_statement (call (attribute (identifier_result_sink) identifier_result_sink (identifier_send) identifier_send )attribute (argument_list (identifier_retrieved_result) identifier_retrieved_result )argument_list )call )expression_statement (continue_statement )continue_statement )block (elif_clause (comparison_operator (identifier_status) identifier_status (string_'attached') string_'attached' )comparison_operator (block (continue_statement )continue_statement )block )elif_clause )if_statement )block )if_statement (expression_statement (yield (identifier_message) identifier_message )yield )expression_statement )block )for_statement )block )function_definition )decorated_definition (return_statement (identifier_pass_job_stream) identifier_pass_job_stream )return_statement )block )function_definition )module
Create a pull stream that receives jobs and passes them on to the database. If the job already has a result, that result is pushed onto the `result_queue`.
(module (function_definition (function_name_prerequisites) function_name_prerequisites (parameters (identifier_self) identifier_self )parameters (block (expression_statement (assignment (identifier_prereqs) identifier_prereqs (call (identifier_defaultdict) identifier_defaultdict (argument_list (identifier_set) identifier_set )argument_list )call )assignment )expression_statement (for_statement (identifier_input) identifier_input (attribute (identifier_self) identifier_self (identifier_inputs) identifier_inputs )attribute (block (expression_statement (assignment (identifier_spec) identifier_spec (call (attribute (attribute (identifier_self) identifier_self (identifier__study) identifier__study )attribute (identifier_spec) identifier_spec )attribute (argument_list (identifier_input) identifier_input )argument_list )call )assignment )expression_statement (if_statement (boolean_operator (attribute (identifier_spec) identifier_spec (identifier_is_spec) identifier_is_spec )attribute (attribute (identifier_spec) identifier_spec (identifier_derived) identifier_derived )attribute )boolean_operator (block (expression_statement (call (attribute (subscript (identifier_prereqs) identifier_prereqs (attribute (identifier_spec) identifier_spec (identifier_pipeline_getter) identifier_pipeline_getter )attribute )subscript (identifier_add) identifier_add )attribute (argument_list (attribute (identifier_input) identifier_input (identifier_name) identifier_name )attribute )argument_list )call )expression_statement )block )if_statement )block )for_statement (return_statement (identifier_prereqs) identifier_prereqs )return_statement )block )function_definition )module
Iterates through the inputs of the pipelinen and determines the all prerequisite pipelines
(module (function_definition (function_name_bytes2guid) function_name_bytes2guid (parameters (identifier_s) identifier_s )parameters (block (assert_statement (call (identifier_isinstance) identifier_isinstance (argument_list (identifier_s) identifier_s (identifier_bytes) identifier_bytes )argument_list )call )assert_statement (expression_statement (assignment (identifier_u) identifier_u (attribute (identifier_struct) identifier_struct (identifier_unpack) identifier_unpack )attribute )assignment )expression_statement (expression_statement (assignment (identifier_v) identifier_v (list )list )assignment )expression_statement (expression_statement (call (attribute (identifier_v) identifier_v (identifier_extend) identifier_extend )attribute (argument_list (call (identifier_u) identifier_u (argument_list (string_"<IHH") string_"<IHH" (subscript (identifier_s) identifier_s (slice (colon) colon (integer_8) integer_8 )slice )subscript )argument_list )call )argument_list )call )expression_statement (expression_statement (call (attribute (identifier_v) identifier_v (identifier_extend) identifier_extend )attribute (argument_list (call (identifier_u) identifier_u (argument_list (string_">HQ") string_">HQ" (binary_operator (binary_operator (subscript (identifier_s) identifier_s (slice (integer_8) integer_8 (colon) colon (integer_10) integer_10 )slice )subscript (string_b"\x00\x00") string_b"\x00\x00" )binary_operator (subscript (identifier_s) identifier_s (slice (integer_10) integer_10 (colon) colon )slice )subscript )binary_operator )argument_list )call )argument_list )call )expression_statement (return_statement (binary_operator (string_"%08X-%04X-%04X-%04X-%012X") string_"%08X-%04X-%04X-%04X-%012X" (call (identifier_tuple) identifier_tuple (argument_list (identifier_v) identifier_v )argument_list )call )binary_operator )return_statement )block )function_definition )module
Converts a serialized GUID to a text GUID
(module (function_definition (function_name_load) function_name_load (parameters (identifier_self) identifier_self (identifier_mkey) identifier_mkey (identifier_mdesc) identifier_mdesc (default_parameter (identifier_mdict) identifier_mdict (None) None )default_parameter (default_parameter (identifier_merge) identifier_merge (False) False )default_parameter )parameters (block (expression_statement (assignment (identifier_j) identifier_j (conditional_expression (identifier_mdict) identifier_mdict (identifier_mdict) identifier_mdict (call (identifier_read_json) identifier_read_json (argument_list (identifier_mdesc) identifier_mdesc )argument_list )call )conditional_expression )assignment )expression_statement (if_statement (boolean_operator (identifier_j) identifier_j (call (identifier_isinstance) identifier_isinstance (argument_list (identifier_j) identifier_j (identifier_dict) identifier_dict )argument_list )call )boolean_operator (block (expression_statement (call (attribute (subscript (attribute (identifier_self) identifier_self (identifier___meta) identifier___meta )attribute (string_'header') string_'header' )subscript (identifier_update) identifier_update )attribute (argument_list (dictionary (pair (identifier_mkey) identifier_mkey (identifier_mdesc) identifier_mdesc )pair )dictionary )argument_list )call )expression_statement (if_statement (identifier_merge) identifier_merge (block (expression_statement (assignment (attribute (identifier_self) identifier_self (identifier___meta) identifier___meta )attribute (call (identifier_dict_merge) identifier_dict_merge (argument_list (attribute (identifier_self) identifier_self (identifier___meta) identifier___meta )attribute (identifier_j) identifier_j )argument_list )call )assignment )expression_statement )block (else_clause (block (expression_statement (assignment (subscript (subscript (attribute (identifier_self) identifier_self (identifier___meta) identifier___meta )attribute (string_'import') string_'import' )subscript (identifier_mkey) identifier_mkey )subscript (identifier_j) identifier_j )assignment )expression_statement )block )else_clause )if_statement (expression_statement (assignment (attribute (identifier_self) identifier_self (identifier_log) identifier_log )attribute (call (identifier_shell_notify) identifier_shell_notify (argument_list (binary_operator (string_'load %s data and %s it into meta') string_'load %s data and %s it into meta' (tuple (conditional_expression (string_'got') string_'got' (identifier_mdict) identifier_mdict (string_'read') string_'read' )conditional_expression (conditional_expression (string_'merged') string_'merged' (identifier_merge) identifier_merge (string_'imported') string_'imported' )conditional_expression )tuple )binary_operator (keyword_argument (identifier_more) identifier_more (call (identifier_dict) identifier_dict (argument_list (keyword_argument (identifier_mkey) identifier_mkey (identifier_mkey) identifier_mkey )keyword_argument (keyword_argument (identifier_mdesc) identifier_mdesc (identifier_mdesc) identifier_mdesc )keyword_argument (keyword_argument (identifier_merge) identifier_merge (identifier_merge) identifier_merge )keyword_argument )argument_list )call )keyword_argument (keyword_argument (identifier_verbose) identifier_verbose (attribute (identifier_self) identifier_self (identifier___verbose) identifier___verbose )attribute )keyword_argument )argument_list )call )assignment )expression_statement )block )if_statement (return_statement (identifier_j) identifier_j )return_statement )block )function_definition )module
Loads a dictionary into current meta :param mkey: Type of data to load. Is be used to reference the data from the 'header' within meta :param mdesc: Either filename of json-file to load or further description of imported data when `mdict` is used :param dict mdict: Directly pass data as dictionary instead of loading it from a json-file. Make sure to set `mkey` and `mdesc` accordingly :param merge: Merge received data into current meta or place it under 'import' within meta :returns: The loaded (or directly passed) content
(module (function_definition (function_name_DeleteConflict) function_name_DeleteConflict (parameters (identifier_self) identifier_self (identifier_conflict_link) identifier_conflict_link (default_parameter (identifier_options) identifier_options (None) None )default_parameter )parameters (block (if_statement (comparison_operator (identifier_options) identifier_options (None) None )comparison_operator (block (expression_statement (assignment (identifier_options) identifier_options (dictionary )dictionary )assignment )expression_statement )block )if_statement (expression_statement (assignment (identifier_path) identifier_path (call (attribute (identifier_base) identifier_base (identifier_GetPathFromLink) identifier_GetPathFromLink )attribute (argument_list (identifier_conflict_link) identifier_conflict_link )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_conflict_id) identifier_conflict_id (call (attribute (identifier_base) identifier_base (identifier_GetResourceIdOrFullNameFromLink) identifier_GetResourceIdOrFullNameFromLink )attribute (argument_list (identifier_conflict_link) identifier_conflict_link )argument_list )call )assignment )expression_statement (return_statement (call (attribute (identifier_self) identifier_self (identifier_DeleteResource) identifier_DeleteResource )attribute (argument_list (identifier_path) identifier_path (string_'conflicts') string_'conflicts' (identifier_conflict_id) identifier_conflict_id (None) None (identifier_options) identifier_options )argument_list )call )return_statement )block )function_definition )module
Deletes a conflict. :param str conflict_link: The link to the conflict. :param dict options: The request options for the request. :return: The deleted Conflict. :rtype: dict
(module (function_definition (function_name_process_signal) function_name_process_signal (parameters (identifier_self) identifier_self (identifier_signum) identifier_signum )parameters (block (if_statement (comparison_operator (identifier_signum) identifier_signum (attribute (identifier_signal) identifier_signal (identifier_SIGTERM) identifier_SIGTERM )attribute )comparison_operator (block (expression_statement (call (attribute (identifier_LOGGER) identifier_LOGGER (identifier_info) identifier_info )attribute (argument_list (string_'Received SIGTERM, initiating shutdown') string_'Received SIGTERM, initiating shutdown' )argument_list )call )expression_statement (expression_statement (call (attribute (identifier_self) identifier_self (identifier_stop) identifier_stop )attribute (argument_list )argument_list )call )expression_statement )block (elif_clause (comparison_operator (identifier_signum) identifier_signum (attribute (identifier_signal) identifier_signal (identifier_SIGHUP) identifier_SIGHUP )attribute )comparison_operator (block (expression_statement (call (attribute (identifier_LOGGER) identifier_LOGGER (identifier_info) identifier_info )attribute (argument_list (string_'Received SIGHUP') string_'Received SIGHUP' )argument_list )call )expression_statement (if_statement (call (attribute (attribute (identifier_self) identifier_self (identifier_config) identifier_config )attribute (identifier_reload) identifier_reload )attribute (argument_list )argument_list )call (block (expression_statement (call (attribute (identifier_LOGGER) identifier_LOGGER (identifier_info) identifier_info )attribute (argument_list (string_'Configuration reloaded') string_'Configuration reloaded' )argument_list )call )expression_statement (expression_statement (call (attribute (attribute (identifier_logging) identifier_logging (identifier_config) identifier_config )attribute (identifier_dictConfig) identifier_dictConfig )attribute (argument_list (attribute (attribute (identifier_self) identifier_self (identifier_config) identifier_config )attribute (identifier_logging) identifier_logging )attribute )argument_list )call )expression_statement (expression_statement (call (attribute (identifier_self) identifier_self (identifier_on_configuration_reloaded) identifier_on_configuration_reloaded )attribute (argument_list )argument_list )call )expression_statement )block )if_statement )block )elif_clause (elif_clause (comparison_operator (identifier_signum) identifier_signum (attribute (identifier_signal) identifier_signal (identifier_SIGUSR1) identifier_SIGUSR1 )attribute )comparison_operator (block (expression_statement (call (attribute (identifier_self) identifier_self (identifier_on_sigusr1) identifier_on_sigusr1 )attribute (argument_list )argument_list )call )expression_statement )block )elif_clause (elif_clause (comparison_operator (identifier_signum) identifier_signum (attribute (identifier_signal) identifier_signal (identifier_SIGUSR2) identifier_SIGUSR2 )attribute )comparison_operator (block (expression_statement (call (attribute (identifier_self) identifier_self (identifier_on_sigusr2) identifier_on_sigusr2 )attribute (argument_list )argument_list )call )expression_statement )block )elif_clause )if_statement )block )function_definition )module
Invoked whenever a signal is added to the stack. :param int signum: The signal that was added
(module (function_definition (function_name_start) function_name_start (parameters (identifier_self) identifier_self )parameters (block (assert_statement (not_operator (attribute (identifier_self) identifier_self (identifier__started) identifier__started )attribute )not_operator )assert_statement (expression_statement (call (attribute (attribute (identifier_self) identifier_self (identifier__listening_stream) identifier__listening_stream )attribute (identifier_on_recv) identifier_on_recv )attribute (argument_list (attribute (identifier_self) identifier_self (identifier__recv_callback) identifier__recv_callback )attribute )argument_list )call )expression_statement (expression_statement (assignment (attribute (identifier_self) identifier_self (identifier__started) identifier__started )attribute (True) True )assignment )expression_statement )block )function_definition )module
Start to listen for incoming requests.
(module (function_definition (function_name_addfield) function_name_addfield (parameters (identifier_self) identifier_self (identifier_pkt) identifier_pkt (identifier_buf) identifier_buf (identifier_val) identifier_val )parameters (block (expression_statement (call (attribute (identifier_self) identifier_self (identifier_set_endianess) identifier_set_endianess )attribute (argument_list (identifier_pkt) identifier_pkt )argument_list )call )expression_statement (return_statement (call (attribute (attribute (identifier_self) identifier_self (identifier_fld) identifier_fld )attribute (identifier_addfield) identifier_addfield )attribute (argument_list (identifier_pkt) identifier_pkt (identifier_buf) identifier_buf (identifier_val) identifier_val )argument_list )call )return_statement )block )function_definition )module
add the field with endianness to the buffer
(module (function_definition (function_name_split_line) function_name_split_line (parameters (identifier_self) identifier_self )parameters (block (expression_statement (assignment (identifier_hash_or_end) identifier_hash_or_end (call (attribute (attribute (identifier_self) identifier_self (identifier_line) identifier_line )attribute (identifier_find) identifier_find )attribute (argument_list (binary_operator (string_" temp = self.line[self.region_end:hash_or_end].strip(") string_" temp = self.line[self.region_end:hash_or_end].strip(" (string_") string_" )binary_operator )argument_list )call )assignment )expression_statement (expression_statement (assignment (attribute (identifier_self) identifier_self (identifier_coord_str) identifier_coord_str )attribute (call (attribute (identifier_regex_paren) identifier_regex_paren (identifier_sub) identifier_sub )attribute (argument_list (string_"") string_"" (identifier_temp) identifier_temp )argument_list )call )assignment )expression_statement (if_statement (comparison_operator (identifier_hash_or_end) identifier_hash_or_end (integer_0) integer_0 )comparison_operator (block (expression_statement (assignment (attribute (identifier_self) identifier_self (identifier_meta_str) identifier_meta_str )attribute (subscript (attribute (identifier_self) identifier_self (identifier_line) identifier_line )attribute (slice (identifier_hash_or_end) identifier_hash_or_end (colon) colon )slice )subscript )assignment )expression_statement )block (else_clause (block (expression_statement (assignment (attribute (identifier_self) identifier_self (identifier_meta_str) identifier_meta_str )attribute (string_"") string_"" )assignment )expression_statement )block )else_clause )if_statement )block )function_definition )module
Split line into coordinates and meta string
(module (function_definition (function_name_save_file_json) function_name_save_file_json (parameters (identifier_data) identifier_data (identifier_export_file) identifier_export_file )parameters (block (expression_statement (call (identifier_create_dir) identifier_create_dir (argument_list (call (attribute (attribute (identifier_os) identifier_os (identifier_path) identifier_path )attribute (identifier_dirname) identifier_dirname )attribute (argument_list (identifier_export_file) identifier_export_file )argument_list )call )argument_list )call )expression_statement (with_statement (with_clause (with_item (as_pattern (call (identifier_open) identifier_open (argument_list (identifier_export_file) identifier_export_file (string_"w") string_"w" )argument_list )call (as_pattern_target (identifier_file) identifier_file )as_pattern_target )as_pattern )with_item )with_clause (block (expression_statement (call (attribute (identifier_json) identifier_json (identifier_dump) identifier_dump )attribute (argument_list (identifier_data) identifier_data (identifier_file) identifier_file (keyword_argument (identifier_indent) identifier_indent (integer_4) integer_4 )keyword_argument )argument_list )call )expression_statement )block )with_statement )block )function_definition )module
Write data to a json file.
(module (function_definition (function_name_parse_metadata) function_name_parse_metadata (parameters (identifier_cls) identifier_cls (identifier_obj) identifier_obj (identifier_xml) identifier_xml )parameters (block (for_statement (identifier_child) identifier_child (call (attribute (identifier_xml) identifier_xml (identifier_xpath) identifier_xpath )attribute (argument_list (string_"ti:description") string_"ti:description" (keyword_argument (identifier_namespaces) identifier_namespaces (identifier_XPATH_NAMESPACES) identifier_XPATH_NAMESPACES )keyword_argument )argument_list )call (block (expression_statement (assignment (identifier_lg) identifier_lg (call (attribute (identifier_child) identifier_child (identifier_get) identifier_get )attribute (argument_list (string_"{http://www.w3.org/XML/1998/namespace}lang") string_"{http://www.w3.org/XML/1998/namespace}lang" )argument_list )call )assignment )expression_statement (if_statement (comparison_operator (identifier_lg) identifier_lg (None) None )comparison_operator (block (expression_statement (call (attribute (identifier_obj) identifier_obj (identifier_set_cts_property) identifier_set_cts_property )attribute (argument_list (string_"description") string_"description" (attribute (identifier_child) identifier_child (identifier_text) identifier_text )attribute (identifier_lg) identifier_lg )argument_list )call )expression_statement )block )if_statement )block )for_statement (for_statement (identifier_child) identifier_child (call (attribute (identifier_xml) identifier_xml (identifier_xpath) identifier_xpath )attribute (argument_list (string_"ti:label") string_"ti:label" (keyword_argument (identifier_namespaces) identifier_namespaces (identifier_XPATH_NAMESPACES) identifier_XPATH_NAMESPACES )keyword_argument )argument_list )call (block (expression_statement (assignment (identifier_lg) identifier_lg (call (attribute (identifier_child) identifier_child (identifier_get) identifier_get )attribute (argument_list (string_"{http://www.w3.org/XML/1998/namespace}lang") string_"{http://www.w3.org/XML/1998/namespace}lang" )argument_list )call )assignment )expression_statement (if_statement (comparison_operator (identifier_lg) identifier_lg (None) None )comparison_operator (block (expression_statement (call (attribute (identifier_obj) identifier_obj (identifier_set_cts_property) identifier_set_cts_property )attribute (argument_list (string_"label") string_"label" (attribute (identifier_child) identifier_child (identifier_text) identifier_text )attribute (identifier_lg) identifier_lg )argument_list )call )expression_statement )block )if_statement )block )for_statement (expression_statement (assignment (attribute (identifier_obj) identifier_obj (identifier_citation) identifier_citation )attribute (call (attribute (attribute (identifier_cls) identifier_cls (identifier_CLASS_CITATION) identifier_CLASS_CITATION )attribute (identifier_ingest) identifier_ingest )attribute (argument_list (identifier_xml) identifier_xml (attribute (identifier_obj) identifier_obj (identifier_citation) identifier_citation )attribute (string_"ti:online/ti:citationMapping/ti:citation") string_"ti:online/ti:citationMapping/ti:citation" )argument_list )call )assignment )expression_statement (for_statement (identifier_child) identifier_child (call (attribute (identifier_xml) identifier_xml (identifier_xpath) identifier_xpath )attribute (argument_list (string_"ti:about") string_"ti:about" (keyword_argument (identifier_namespaces) identifier_namespaces (identifier_XPATH_NAMESPACES) identifier_XPATH_NAMESPACES )keyword_argument )argument_list )call (block (expression_statement (call (attribute (identifier_obj) identifier_obj (identifier_set_link) identifier_set_link )attribute (argument_list (call (attribute (attribute (identifier_RDF_NAMESPACES) identifier_RDF_NAMESPACES (identifier_CTS) identifier_CTS )attribute (identifier_term) identifier_term )attribute (argument_list (string_"about") string_"about" )argument_list )call (call (attribute (identifier_child) identifier_child (identifier_get) identifier_get )attribute (argument_list (string_'urn') string_'urn' )argument_list )call )argument_list )call )expression_statement )block )for_statement (expression_statement (call (identifier__parse_structured_metadata) identifier__parse_structured_metadata (argument_list (identifier_obj) identifier_obj (identifier_xml) identifier_xml )argument_list )call )expression_statement )block )function_definition )module
Parse a resource to feed the object :param obj: Obj to set metadata of :type obj: XmlCtsTextMetadata :param xml: An xml representation object :type xml: lxml.etree._Element
(module (function_definition (function_name_create) function_name_create (parameters (identifier_args) identifier_args )parameters (block (with_statement (with_clause (with_item (as_pattern (call (identifier__catalog) identifier__catalog (argument_list (identifier_args) identifier_args )argument_list )call (as_pattern_target (identifier_cat) identifier_cat )as_pattern_target )as_pattern )with_item )with_clause (block (for_statement (pattern_list (identifier_fname) identifier_fname (identifier_created) identifier_created (identifier_obj) identifier_obj )pattern_list (call (attribute (identifier_cat) identifier_cat (identifier_create) identifier_create )attribute (argument_list (subscript (attribute (identifier_args) identifier_args (identifier_args) identifier_args )attribute (integer_0) integer_0 )subscript (dictionary )dictionary )argument_list )call (block (expression_statement (call (attribute (attribute (identifier_args) identifier_args (identifier_log) identifier_log )attribute (identifier_info) identifier_info )attribute (argument_list (call (attribute (string_'{0} -> {1} object {2.id}') string_'{0} -> {1} object {2.id}' (identifier_format) identifier_format )attribute (argument_list (identifier_fname) identifier_fname (conditional_expression (string_'new') string_'new' (identifier_created) identifier_created (string_'existing') string_'existing' )conditional_expression (identifier_obj) identifier_obj )argument_list )call )argument_list )call )expression_statement )block )for_statement )block )with_statement )block )function_definition )module
cdstarcat create PATH Create objects in CDSTAR specified by PATH. When PATH is a file, a single object (possibly with multiple bitstreams) is created; When PATH is a directory, an object will be created for each file in the directory (recursing into subdirectories).
(module (function_definition (function_name_interpolate_with) function_name_interpolate_with (parameters (identifier_self) identifier_self (identifier_other_tf) identifier_other_tf (identifier_t) identifier_t )parameters (block (if_statement (boolean_operator (comparison_operator (identifier_t) identifier_t (integer_0) integer_0 )comparison_operator (comparison_operator (identifier_t) identifier_t (integer_1) integer_1 )comparison_operator )boolean_operator (block (raise_statement (call (identifier_ValueError) identifier_ValueError (argument_list (string_'Must interpolate between 0 and 1') string_'Must interpolate between 0 and 1' )argument_list )call )raise_statement )block )if_statement (expression_statement (assignment (identifier_interp_translation) identifier_interp_translation (binary_operator (binary_operator (parenthesized_expression (binary_operator (float_1.0) float_1.0 (identifier_t) identifier_t )binary_operator )parenthesized_expression (attribute (identifier_self) identifier_self (identifier_translation) identifier_translation )attribute )binary_operator (binary_operator (identifier_t) identifier_t (attribute (identifier_other_tf) identifier_other_tf (identifier_translation) identifier_translation )attribute )binary_operator )binary_operator )assignment )expression_statement (expression_statement (assignment (identifier_interp_rotation) identifier_interp_rotation (call (attribute (identifier_transformations) identifier_transformations (identifier_quaternion_slerp) identifier_quaternion_slerp )attribute (argument_list (attribute (identifier_self) identifier_self (identifier_quaternion) identifier_quaternion )attribute (attribute (identifier_other_tf) identifier_other_tf (identifier_quaternion) identifier_quaternion )attribute (identifier_t) identifier_t )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_interp_tf) identifier_interp_tf (call (identifier_RigidTransform) identifier_RigidTransform (argument_list (keyword_argument (identifier_rotation) identifier_rotation (identifier_interp_rotation) identifier_interp_rotation )keyword_argument (keyword_argument (identifier_translation) identifier_translation (identifier_interp_translation) identifier_interp_translation )keyword_argument (keyword_argument (identifier_from_frame) identifier_from_frame (attribute (identifier_self) identifier_self (identifier_from_frame) identifier_from_frame )attribute )keyword_argument (keyword_argument (identifier_to_frame) identifier_to_frame (attribute (identifier_self) identifier_self (identifier_to_frame) identifier_to_frame )attribute )keyword_argument )argument_list )call )assignment )expression_statement (return_statement (identifier_interp_tf) identifier_interp_tf )return_statement )block )function_definition )module
Interpolate with another rigid transformation. Parameters ---------- other_tf : :obj:`RigidTransform` The transform to interpolate with. t : float The interpolation step in [0,1], where 0 favors this RigidTransform. Returns ------- :obj:`RigidTransform` The interpolated RigidTransform. Raises ------ ValueError If t isn't in [0,1].
(module (function_definition (function_name_norm_score) function_name_norm_score (parameters (identifier_self) identifier_self )parameters (block (expression_statement (assignment (identifier_cdf) identifier_cdf (binary_operator (parenthesized_expression (binary_operator (float_1.0) float_1.0 (call (attribute (identifier_math) identifier_math (identifier_erf) identifier_erf )attribute (argument_list (binary_operator (attribute (identifier_self) identifier_self (identifier_score) identifier_score )attribute (call (attribute (identifier_math) identifier_math (identifier_sqrt) identifier_sqrt )attribute (argument_list (float_2.0) float_2.0 )argument_list )call )binary_operator )argument_list )call )binary_operator )parenthesized_expression (float_2.0) float_2.0 )binary_operator )assignment )expression_statement (return_statement (binary_operator (integer_1) integer_1 (binary_operator (integer_2) integer_2 (call (attribute (identifier_math) identifier_math (identifier_fabs) identifier_fabs )attribute (argument_list (binary_operator (float_0.5) float_0.5 (identifier_cdf) identifier_cdf )binary_operator )argument_list )call )binary_operator )binary_operator )return_statement )block )function_definition )module
Return the normalized score. Equals 1.0 for a z-score of 0, falling to 0.0 for extremely positive or negative values.
(module (function_definition (function_name_bind) function_name_bind (parameters (identifier_self) identifier_self (identifier_environ) identifier_environ )parameters (block (expression_statement (assignment (attribute (identifier_self) identifier_self (identifier_environ) identifier_environ )attribute (identifier_environ) identifier_environ )assignment )expression_statement (expression_statement (assignment (attribute (identifier_self) identifier_self (identifier_path) identifier_path )attribute (binary_operator (string_'/') string_'/' (call (attribute (call (attribute (identifier_environ) identifier_environ (identifier_get) identifier_get )attribute (argument_list (string_'PATH_INFO') string_'PATH_INFO' (string_'/') string_'/' )argument_list )call (identifier_lstrip) identifier_lstrip )attribute (argument_list (string_'/') string_'/' )argument_list )call )binary_operator )assignment )expression_statement (expression_statement (assignment (attribute (identifier_self) identifier_self (identifier_method) identifier_method )attribute (call (attribute (call (attribute (identifier_environ) identifier_environ (identifier_get) identifier_get )attribute (argument_list (string_'REQUEST_METHOD') string_'REQUEST_METHOD' (string_'GET') string_'GET' )argument_list )call (identifier_upper) identifier_upper )attribute (argument_list )argument_list )call )assignment )expression_statement )block )function_definition )module
Bind a new WSGI environment. This is done automatically for the global `bottle.request` instance on every request.
(module (function_definition (function_name__gen_3spec) function_name__gen_3spec (parameters (identifier_op) identifier_op (identifier_path) identifier_path (default_parameter (identifier_xattr) identifier_xattr (False) False )default_parameter )parameters (block (expression_statement (assignment (identifier_flags) identifier_flags (integer_0) integer_0 )assignment )expression_statement (if_statement (identifier_xattr) identifier_xattr (block (expression_statement (augmented_assignment (identifier_flags) identifier_flags (attribute (identifier__P) identifier__P (identifier_SDSPEC_F_XATTR) identifier_SDSPEC_F_XATTR )attribute )augmented_assignment )expression_statement )block )if_statement (return_statement (call (identifier_Spec) identifier_Spec (argument_list (identifier_op) identifier_op (identifier_path) identifier_path (identifier_flags) identifier_flags )argument_list )call )return_statement )block )function_definition )module
Returns a Spec tuple suitable for passing to the underlying C extension. This variant is called for operations that lack an input value. :param str path: The path to fetch :param bool xattr: Whether this is an extended attribute :return: a spec suitable for passing to the underlying C extension
(module (function_definition (function_name_as_rainbow) function_name_as_rainbow (parameters (identifier_self) identifier_self (default_parameter (identifier_offset) identifier_offset (integer_35) integer_35 )default_parameter (default_parameter (identifier_style) identifier_style (None) None )default_parameter (default_parameter (identifier_rgb_mode) identifier_rgb_mode (False) False )default_parameter )parameters (block (return_statement (call (attribute (identifier_self) identifier_self (identifier__as_rainbow) identifier__as_rainbow )attribute (argument_list (tuple (string_'wrapper') string_'wrapper' )tuple (keyword_argument (identifier_offset) identifier_offset (identifier_offset) identifier_offset )keyword_argument (keyword_argument (identifier_style) identifier_style (identifier_style) identifier_style )keyword_argument (keyword_argument (identifier_rgb_mode) identifier_rgb_mode (identifier_rgb_mode) identifier_rgb_mode )keyword_argument )argument_list )call )return_statement )block )function_definition )module
Wrap each frame in a Colr object, using `Colr.rainbow`.
(module (function_definition (function_name_ci_macos) function_name_ci_macos (parameters )parameters (block (expression_statement (call (identifier_run_command) identifier_run_command (argument_list (string_"brew install $PYTHON pipenv || echo \"Installed PipEnv\"") string_"brew install $PYTHON pipenv || echo \"Installed PipEnv\"" )argument_list )call )expression_statement (expression_statement (assignment (identifier_command_string) identifier_command_string (string_"sudo -H $PIP install ") string_"sudo -H $PIP install " )assignment )expression_statement (for_statement (identifier_element) identifier_element (binary_operator (binary_operator (identifier_DEPENDENCIES) identifier_DEPENDENCIES (identifier_REQUIREMENTS) identifier_REQUIREMENTS )binary_operator (list (string_"-U") string_"-U" )list )binary_operator (block (expression_statement (augmented_assignment (identifier_command_string) identifier_command_string (binary_operator (identifier_element) identifier_element (string_" ") string_" " )binary_operator )augmented_assignment )expression_statement )block )for_statement (expression_statement (call (identifier_run_command) identifier_run_command (argument_list (identifier_command_string) identifier_command_string )argument_list )call )expression_statement (expression_statement (call (identifier_run_command) identifier_run_command (argument_list (string_"sudo -H $PYTHON setup.py bdist_wheel") string_"sudo -H $PYTHON setup.py bdist_wheel" )argument_list )call )expression_statement (assert_statement (call (identifier_check_wheel_existence) identifier_check_wheel_existence (argument_list )argument_list )call )assert_statement (expression_statement (call (identifier_exit) identifier_exit (argument_list (integer_0) integer_0 )argument_list )call )expression_statement )block )function_definition )module
Setup Travis-CI macOS for wheel building
(module (function_definition (function_name_clicks) function_name_clicks (parameters (identifier_self) identifier_self (default_parameter (identifier_tag) identifier_tag (None) None )default_parameter (default_parameter (identifier_fromdate) identifier_fromdate (None) None )default_parameter (default_parameter (identifier_todate) identifier_todate (None) None )default_parameter )parameters (block (return_statement (call (attribute (identifier_self) identifier_self (identifier_call) identifier_call )attribute (argument_list (string_"GET") string_"GET" (string_"/stats/outbound/clicks") string_"/stats/outbound/clicks" (keyword_argument (identifier_tag) identifier_tag (identifier_tag) identifier_tag )keyword_argument (keyword_argument (identifier_fromdate) identifier_fromdate (identifier_fromdate) identifier_fromdate )keyword_argument (keyword_argument (identifier_todate) identifier_todate (identifier_todate) identifier_todate )keyword_argument )argument_list )call )return_statement )block )function_definition )module
Gets total counts of unique links that were clicked.
(module (function_definition (function_name_search) function_name_search (parameters (identifier_self) identifier_self (identifier_search) identifier_search )parameters (block (expression_statement (assignment (identifier_search) identifier_search (call (attribute (identifier_search) identifier_search (identifier_replace) identifier_replace )attribute (argument_list (string_'/') string_'/' (string_' ') string_' ' )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_params) identifier_params (dictionary (pair (string_'q') string_'q' (identifier_search) identifier_search )pair )dictionary )assignment )expression_statement (return_statement (call (attribute (identifier_self) identifier_self (identifier__get_records) identifier__get_records )attribute (argument_list (identifier_params) identifier_params )argument_list )call )return_statement )block )function_definition )module
search Zenodo record for string `search` :param search: string to search :return: Record[] results
(module (function_definition (function_name_get_tags_users) function_name_get_tags_users (parameters (identifier_self) identifier_self (identifier_id_) identifier_id_ )parameters (block (return_statement (call (identifier__get_request) identifier__get_request (argument_list (call (attribute (identifier__TAGS_USERS) identifier__TAGS_USERS (identifier_format) identifier_format )attribute (argument_list (keyword_argument (identifier_c_api) identifier_c_api (identifier__C_API_BEGINNING) identifier__C_API_BEGINNING )keyword_argument (keyword_argument (identifier_api) identifier_api (identifier__API_VERSION) identifier__API_VERSION )keyword_argument (keyword_argument (identifier_id_) identifier_id_ (identifier_id_) identifier_id_ )keyword_argument (keyword_argument (identifier_at) identifier_at (attribute (identifier_self) identifier_self (identifier_access_token) identifier_access_token )attribute )keyword_argument )argument_list )call )argument_list )call )return_statement )block )function_definition )module
Get a particular user which are tagged based on the id_
(module (function_definition (function_name__set_cursor_position) function_name__set_cursor_position (parameters (identifier_self) identifier_self (identifier_value) identifier_value )parameters (block (expression_statement (assignment (identifier_original_position) identifier_original_position (attribute (identifier_self) identifier_self (identifier___cursor_position) identifier___cursor_position )attribute )assignment )expression_statement (expression_statement (assignment (attribute (identifier_self) identifier_self (identifier___cursor_position) identifier___cursor_position )attribute (call (identifier_max) identifier_max (argument_list (integer_0) integer_0 (identifier_value) identifier_value )argument_list )call )assignment )expression_statement (return_statement (comparison_operator (identifier_value) identifier_value (identifier_original_position) identifier_original_position )comparison_operator )return_statement )block )function_definition )module
Set cursor position. Return whether it changed.
(module (function_definition (function_name_git_wrapper) function_name_git_wrapper (parameters (identifier_path) identifier_path )parameters (block (expression_statement (assignment (identifier_path) identifier_path (call (attribute (attribute (identifier_os) identifier_os (identifier_path) identifier_path )attribute (identifier_abspath) identifier_abspath )attribute (argument_list (identifier_path) identifier_path )argument_list )call )assignment )expression_statement (if_statement (comparison_operator (identifier_path) identifier_path (identifier__wrapper_cache) identifier__wrapper_cache )comparison_operator (block (if_statement (call (identifier_hasattr) identifier_hasattr (argument_list (identifier_Repo) identifier_Repo (string_'commits') string_'commits' )argument_list )call (block (expression_statement (assignment (subscript (identifier__wrapper_cache) identifier__wrapper_cache (identifier_path) identifier_path )subscript (call (identifier__GitWrapperLegacy) identifier__GitWrapperLegacy (argument_list (identifier_path) identifier_path )argument_list )call )assignment )expression_statement )block (else_clause (block (expression_statement (assignment (subscript (identifier__wrapper_cache) identifier__wrapper_cache (identifier_path) identifier_path )subscript (call (identifier__GitWrapper) identifier__GitWrapper (argument_list (identifier_path) identifier_path )argument_list )call )assignment )expression_statement )block )else_clause )if_statement )block )if_statement (return_statement (subscript (identifier__wrapper_cache) identifier__wrapper_cache (identifier_path) identifier_path )subscript )return_statement )block )function_definition )module
Get appropriate wrapper factory and cache instance for path
(module (function_definition (function_name_install_versioning) function_name_install_versioning (parameters (identifier_self) identifier_self (identifier_conn) identifier_conn )parameters (block (expression_statement (call (attribute (identifier_logging) identifier_logging (identifier_info) identifier_info )attribute (argument_list (string_'Creating the versioning table %s') string_'Creating the versioning table %s' (attribute (identifier_self) identifier_self (identifier_version_table) identifier_version_table )attribute )argument_list )call )expression_statement (expression_statement (call (attribute (identifier_conn) identifier_conn (identifier_executescript) identifier_executescript )attribute (argument_list (binary_operator (identifier_CREATE_VERSIONING) identifier_CREATE_VERSIONING (attribute (identifier_self) identifier_self (identifier_version_table) identifier_version_table )attribute )binary_operator )argument_list )call )expression_statement (expression_statement (call (attribute (identifier_self) identifier_self (identifier__insert_script) identifier__insert_script )attribute (argument_list (subscript (call (attribute (identifier_self) identifier_self (identifier_read_scripts) identifier_read_scripts )attribute (argument_list )argument_list )call (integer_0) integer_0 )subscript (identifier_conn) identifier_conn )argument_list )call )expression_statement )block )function_definition )module
Create the version table into an already populated database and insert the base script. :param conn: a DB API 2 connection
(module (function_definition (function_name_job) function_name_job (parameters (identifier_self) identifier_self (identifier_name) identifier_name )parameters (block (for_statement (identifier_job) identifier_job (call (attribute (identifier_self) identifier_self (identifier_jobs) identifier_jobs )attribute (argument_list )argument_list )call (block (if_statement (comparison_operator (attribute (attribute (identifier_job) identifier_job (identifier_data) identifier_data )attribute (identifier_name) identifier_name )attribute (identifier_name) identifier_name )comparison_operator (block (return_statement (identifier_job) identifier_job )return_statement )block )if_statement )block )for_statement )block )function_definition )module
Method for searching specific job by it's name. :param name: name of the job to search. :return: found job or None. :rtype: yagocd.resources.job.JobInstance
(module (function_definition (function_name_decompress) function_name_decompress (parameters (identifier_self) identifier_self (identifier_chunk) identifier_chunk )parameters (block (try_statement (block (return_statement (call (attribute (attribute (identifier_self) identifier_self (identifier__decompressobj) identifier__decompressobj )attribute (identifier_decompress) identifier_decompress )attribute (argument_list (identifier_chunk) identifier_chunk )argument_list )call )return_statement )block (except_clause (attribute (identifier_zlib) identifier_zlib (identifier_error) identifier_error )attribute (block (if_statement (attribute (identifier_self) identifier_self (identifier__first_chunk) identifier__first_chunk )attribute (block (expression_statement (assignment (attribute (identifier_self) identifier_self (identifier__decompressobj) identifier__decompressobj )attribute (call (attribute (identifier_zlib) identifier_zlib (identifier_decompressobj) identifier_decompressobj )attribute (argument_list (unary_operator (attribute (identifier_zlib) identifier_zlib (identifier_MAX_WBITS) identifier_MAX_WBITS )attribute )unary_operator )argument_list )call )assignment )expression_statement (return_statement (call (attribute (attribute (identifier_self) identifier_self (identifier__decompressobj) identifier__decompressobj )attribute (identifier_decompress) identifier_decompress )attribute (argument_list (identifier_chunk) identifier_chunk )argument_list )call )return_statement )block )if_statement (raise_statement )raise_statement )block )except_clause (finally_clause (block (expression_statement (assignment (attribute (identifier_self) identifier_self (identifier__first_chunk) identifier__first_chunk )attribute (False) False )assignment )expression_statement )block )finally_clause )try_statement )block )function_definition )module
Decompress the chunk of data. :param bytes chunk: data chunk :rtype: bytes
(module (function_definition (function_name_get_version_history_for_file) function_name_get_version_history_for_file (parameters (identifier_self) identifier_self (identifier_filepath) identifier_filepath )parameters (block (expression_statement (assignment (identifier_GIT_COMMIT_FIELDS) identifier_GIT_COMMIT_FIELDS (list (string_'id') string_'id' (string_'author_name') string_'author_name' (string_'author_email') string_'author_email' (string_'date') string_'date' (string_'date_ISO_8601') string_'date_ISO_8601' (string_'relative_date') string_'relative_date' (string_'message_subject') string_'message_subject' (string_'message_body') string_'message_body' )list )assignment )expression_statement (expression_statement (assignment (identifier_GIT_LOG_FORMAT) identifier_GIT_LOG_FORMAT (list (string_'%H') string_'%H' (string_'%an') string_'%an' (string_'%ae') string_'%ae' (string_'%aD') string_'%aD' (string_'%ai') string_'%ai' (string_'%ar') string_'%ar' (string_'%s') string_'%s' (string_'%b') string_'%b' )list )assignment )expression_statement (expression_statement (assignment (identifier_GIT_LOG_FORMAT) identifier_GIT_LOG_FORMAT (binary_operator (call (attribute (string_'%x1f') string_'%x1f' (identifier_join) identifier_join )attribute (argument_list (identifier_GIT_LOG_FORMAT) identifier_GIT_LOG_FORMAT )argument_list )call (string_'%x1e') string_'%x1e' )binary_operator )assignment )expression_statement (try_statement (block (expression_statement (assignment (identifier_log) identifier_log (call (identifier_git) identifier_git (argument_list (attribute (identifier_self) identifier_self (identifier_gitdir) identifier_gitdir )attribute (attribute (identifier_self) identifier_self (identifier_gitwd) identifier_gitwd )attribute (string_'--no-pager') string_'--no-pager' (string_'log') string_'log' (binary_operator (string_'--format=%s') string_'--format=%s' (identifier_GIT_LOG_FORMAT) identifier_GIT_LOG_FORMAT )binary_operator (string_'--follow') string_'--follow' (string_'--find-renames=100%') string_'--find-renames=100%' (string_'--') string_'--' (identifier_filepath) identifier_filepath )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_log) identifier_log (call (attribute (call (attribute (identifier_log) identifier_log (identifier_strip) identifier_strip )attribute (argument_list (string_'\n\x1e') string_'\n\x1e' )argument_list )call (identifier_split) identifier_split )attribute (argument_list (string_"\x1e") string_"\x1e" )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_log) identifier_log (list_comprehension (call (attribute (call (attribute (identifier_row) identifier_row (identifier_strip) identifier_strip )attribute (argument_list )argument_list )call (identifier_split) identifier_split )attribute (argument_list (string_"\x1f") string_"\x1f" )argument_list )call (for_in_clause (identifier_row) identifier_row (identifier_log) identifier_log )for_in_clause )list_comprehension )assignment )expression_statement (expression_statement (assignment (identifier_log) identifier_log (list_comprehension (call (identifier_dict) identifier_dict (argument_list (call (identifier_zip) identifier_zip (argument_list (identifier_GIT_COMMIT_FIELDS) identifier_GIT_COMMIT_FIELDS (identifier_row) identifier_row )argument_list )call )argument_list )call (for_in_clause (identifier_row) identifier_row (identifier_log) identifier_log )for_in_clause )list_comprehension )assignment )expression_statement )block (except_clause (block (expression_statement (call (attribute (identifier__LOG) identifier__LOG (identifier_exception) identifier_exception )attribute (argument_list (string_'git log failed') string_'git log failed' )argument_list )call )expression_statement (raise_statement )raise_statement )block )except_clause )try_statement (return_statement (identifier_log) identifier_log )return_statement )block )function_definition )module
Return a dict representation of this file's commit history This uses specially formatted git-log output for easy parsing, as described here: http://blog.lost-theory.org/post/how-to-parse-git-log-output/ For a full list of available fields, see: http://linux.die.net/man/1/git-log
(module (function_definition (function_name_get_themes) function_name_get_themes (parameters )parameters (block (expression_statement (assignment (identifier_styles_dir) identifier_styles_dir (call (attribute (attribute (identifier_os) identifier_os (identifier_path) identifier_path )attribute (identifier_join) identifier_join )attribute (argument_list (identifier_package_dir) identifier_package_dir (string_'styles') string_'styles' )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_themes) identifier_themes (list_comprehension (call (attribute (call (attribute (attribute (identifier_os) identifier_os (identifier_path) identifier_path )attribute (identifier_basename) identifier_basename )attribute (argument_list (identifier_theme) identifier_theme )argument_list )call (identifier_replace) identifier_replace )attribute (argument_list (string_'.less') string_'.less' (string_'') string_'' )argument_list )call (for_in_clause (identifier_theme) identifier_theme (call (identifier_glob) identifier_glob (argument_list (call (attribute (string_'{0}/*.less') string_'{0}/*.less' (identifier_format) identifier_format )attribute (argument_list (identifier_styles_dir) identifier_styles_dir )argument_list )call )argument_list )call )for_in_clause )list_comprehension )assignment )expression_statement (return_statement (identifier_themes) identifier_themes )return_statement )block )function_definition )module
return list of available themes
(module (function_definition (function_name_set_proxy_bypass) function_name_set_proxy_bypass (parameters (identifier_domains) identifier_domains (default_parameter (identifier_network_service) identifier_network_service (string_"Ethernet") string_"Ethernet" )default_parameter )parameters (block (expression_statement (assignment (identifier_servers_str) identifier_servers_str (call (attribute (string_' ') string_' ' (identifier_join) identifier_join )attribute (argument_list (identifier_domains) identifier_domains )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_cmd) identifier_cmd (call (attribute (string_'networksetup -setproxybypassdomains {0} {1}') string_'networksetup -setproxybypassdomains {0} {1}' (identifier_format) identifier_format )attribute (argument_list (identifier_network_service) identifier_network_service (identifier_servers_str) identifier_servers_str )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_out) identifier_out (call (subscript (identifier___salt__) identifier___salt__ (string_'cmd.run') string_'cmd.run' )subscript (argument_list (identifier_cmd) identifier_cmd )argument_list )call )assignment )expression_statement (return_statement (comparison_operator (string_'error') string_'error' (identifier_out) identifier_out )comparison_operator )return_statement )block )function_definition )module
Sets the domains that can bypass the proxy domains An array of domains allowed to bypass the proxy network_service The network service to apply the changes to, this only necessary on macOS CLI Example: .. code-block:: bash salt '*' proxy.set_proxy_bypass "['127.0.0.1', 'localhost']"
(module (function_definition (function_name_suspend_queues) function_name_suspend_queues (parameters (identifier_self) identifier_self (identifier_active_queues) identifier_active_queues (default_parameter (identifier_sleep_time) identifier_sleep_time (float_10.0) float_10.0 )default_parameter )parameters (block (for_statement (identifier_queue) identifier_queue (identifier_active_queues) identifier_active_queues (block (expression_statement (call (attribute (identifier_self) identifier_self (identifier_disable_queue) identifier_disable_queue )attribute (argument_list (identifier_queue) identifier_queue )argument_list )call )expression_statement )block )for_statement (while_statement (call (attribute (identifier_self) identifier_self (identifier_get_active_tasks) identifier_get_active_tasks )attribute (argument_list )argument_list )call (block (expression_statement (call (attribute (identifier_time) identifier_time (identifier_sleep) identifier_sleep )attribute (argument_list (identifier_sleep_time) identifier_sleep_time )argument_list )call )expression_statement )block )while_statement )block )function_definition )module
Suspend Celery queues and wait for running tasks to complete.
(module (function_definition (function_name_find_all_segment) function_name_find_all_segment (parameters (typed_parameter (identifier_text) identifier_text (type (identifier_str) identifier_str )type )typed_parameter (typed_default_parameter (identifier_custom_dict) identifier_custom_dict (type (identifier_Trie) identifier_Trie )type (None) None )typed_default_parameter )parameters (type (generic_type (identifier_List) identifier_List (type_parameter (type (identifier_str) identifier_str )type )type_parameter )generic_type )type (block (if_statement (boolean_operator (not_operator (identifier_text) identifier_text )not_operator (not_operator (call (identifier_isinstance) identifier_isinstance (argument_list (identifier_text) identifier_text (identifier_str) identifier_str )argument_list )call )not_operator )boolean_operator (block (return_statement (list )list )return_statement )block )if_statement (expression_statement (assignment (identifier_ww) identifier_ww (call (identifier_list) identifier_list (argument_list (call (identifier__multicut) identifier__multicut (argument_list (identifier_text) identifier_text (keyword_argument (identifier_custom_dict) identifier_custom_dict (identifier_custom_dict) identifier_custom_dict )keyword_argument )argument_list )call )argument_list )call )assignment )expression_statement (return_statement (call (identifier_list) identifier_list (argument_list (call (identifier__combine) identifier__combine (argument_list (identifier_ww) identifier_ww )argument_list )call )argument_list )call )return_statement )block )function_definition )module
Get all possible segment variations :param str text: input string to be tokenized :return: returns list of segment variations
(module (function_definition (function_name_create_session) function_name_create_session (parameters (identifier_self) identifier_self )parameters (block (expression_statement (assignment (identifier_url) identifier_url (call (attribute (identifier_self) identifier_self (identifier_build_url) identifier_build_url )attribute (argument_list (call (attribute (attribute (identifier_self) identifier_self (identifier__endpoints) identifier__endpoints )attribute (identifier_get) identifier_get )attribute (argument_list (string_'create_session') string_'create_session' )argument_list )call )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_response) identifier_response (call (attribute (attribute (identifier_self) identifier_self (identifier_con) identifier_con )attribute (identifier_post) identifier_post )attribute (argument_list (identifier_url) identifier_url (keyword_argument (identifier_data) identifier_data (dictionary (pair (string_'persistChanges') string_'persistChanges' (attribute (identifier_self) identifier_self (identifier_persist) identifier_persist )attribute )pair )dictionary )keyword_argument )argument_list )call )assignment )expression_statement (if_statement (not_operator (identifier_response) identifier_response )not_operator (block (raise_statement (call (identifier_RuntimeError) identifier_RuntimeError (argument_list (string_'Could not create session as requested by the user.') string_'Could not create session as requested by the user.' )argument_list )call )raise_statement )block )if_statement (expression_statement (assignment (identifier_data) identifier_data (call (attribute (identifier_response) identifier_response (identifier_json) identifier_json )attribute (argument_list )argument_list )call )assignment )expression_statement (expression_statement (assignment (attribute (identifier_self) identifier_self (identifier_session_id) identifier_session_id )attribute (call (attribute (identifier_data) identifier_data (identifier_get) identifier_get )attribute (argument_list (string_'id') string_'id' )argument_list )call )assignment )expression_statement (return_statement (True) True )return_statement )block )function_definition )module
Request a new session id
(module (function_definition (function_name_get_next_action) function_name_get_next_action (parameters (identifier_self) identifier_self (identifier_request) identifier_request (identifier_application) identifier_application (identifier_label) identifier_label (identifier_roles) identifier_roles )parameters (block (if_statement (comparison_operator (identifier_label) identifier_label (None) None )comparison_operator (block (return_statement (call (identifier_HttpResponseBadRequest) identifier_HttpResponseBadRequest (argument_list (string_"<h1>Bad Request</h1>") string_"<h1>Bad Request</h1>" )argument_list )call )return_statement )block )if_statement (expression_statement (assignment (identifier_actions) identifier_actions (call (attribute (identifier_self) identifier_self (identifier_get_actions) identifier_get_actions )attribute (argument_list (identifier_request) identifier_request (identifier_application) identifier_application (identifier_roles) identifier_roles )argument_list )call )assignment )expression_statement (if_statement (comparison_operator (attribute (identifier_request) identifier_request (identifier_method) identifier_method )attribute (string_"GET") string_"GET" )comparison_operator (block (expression_statement (assignment (identifier_context) identifier_context (attribute (identifier_self) identifier_self (identifier_context) identifier_context )attribute )assignment )expression_statement (expression_statement (call (attribute (identifier_context) identifier_context (identifier_update) identifier_update )attribute (argument_list (dictionary (pair (string_'application') string_'application' (identifier_application) identifier_application )pair (pair (string_'actions') string_'actions' (identifier_actions) identifier_actions )pair (pair (string_'state') string_'state' (attribute (identifier_self) identifier_self (identifier_name) identifier_name )attribute )pair (pair (string_'roles') string_'roles' (identifier_roles) identifier_roles )pair )dictionary )argument_list )call )expression_statement (return_statement (call (identifier_render) identifier_render (argument_list (keyword_argument (identifier_template_name) identifier_template_name (string_'kgapplications/common_detail.html') string_'kgapplications/common_detail.html' )keyword_argument (keyword_argument (identifier_context) identifier_context (identifier_context) identifier_context )keyword_argument (keyword_argument (identifier_request) identifier_request (identifier_request) identifier_request )keyword_argument )argument_list )call )return_statement )block (elif_clause (comparison_operator (attribute (identifier_request) identifier_request (identifier_method) identifier_method )attribute (string_"POST") string_"POST" )comparison_operator (block (for_statement (identifier_action) identifier_action (identifier_actions) identifier_actions (block (if_statement (comparison_operator (identifier_action) identifier_action (attribute (identifier_request) identifier_request (identifier_POST) identifier_POST )attribute )comparison_operator (block (return_statement (identifier_action) identifier_action )return_statement )block )if_statement )block )for_statement )block )elif_clause )if_statement (return_statement (call (identifier_HttpResponseBadRequest) identifier_HttpResponseBadRequest (argument_list (string_"<h1>Bad Request</h1>") string_"<h1>Bad Request</h1>" )argument_list )call )return_statement )block )function_definition )module
Django view method. We provide a default detail view for applications.
(module (function_definition (function_name_process_pc_pathsbetween) function_name_process_pc_pathsbetween (parameters (identifier_gene_names) identifier_gene_names (default_parameter (identifier_neighbor_limit) identifier_neighbor_limit (integer_1) integer_1 )default_parameter (default_parameter (identifier_database_filter) identifier_database_filter (None) None )default_parameter (default_parameter (identifier_block_size) identifier_block_size (None) None )default_parameter )parameters (block (if_statement (not_operator (identifier_block_size) identifier_block_size )not_operator (block (expression_statement (assignment (identifier_model) identifier_model (call (attribute (identifier_pcc) identifier_pcc (identifier_graph_query) identifier_graph_query )attribute (argument_list (string_'pathsbetween') string_'pathsbetween' (identifier_gene_names) identifier_gene_names (keyword_argument (identifier_neighbor_limit) identifier_neighbor_limit (identifier_neighbor_limit) identifier_neighbor_limit )keyword_argument (keyword_argument (identifier_database_filter) identifier_database_filter (identifier_database_filter) identifier_database_filter )keyword_argument )argument_list )call )assignment )expression_statement (if_statement (comparison_operator (identifier_model) identifier_model (None) None )comparison_operator (block (return_statement (call (identifier_process_model) identifier_process_model (argument_list (identifier_model) identifier_model )argument_list )call )return_statement )block )if_statement )block (else_clause (block (expression_statement (assignment (identifier_gene_blocks) identifier_gene_blocks (list_comprehension (subscript (identifier_gene_names) identifier_gene_names (slice (identifier_i) identifier_i (colon) colon (binary_operator (identifier_i) identifier_i (identifier_block_size) identifier_block_size )binary_operator )slice )subscript (for_in_clause (identifier_i) identifier_i (call (identifier_range) identifier_range (argument_list (integer_0) integer_0 (call (identifier_len) identifier_len (argument_list (identifier_gene_names) identifier_gene_names )argument_list )call (identifier_block_size) identifier_block_size )argument_list )call )for_in_clause )list_comprehension )assignment )expression_statement (expression_statement (assignment (identifier_stmts) identifier_stmts (list )list )assignment )expression_statement (for_statement (pattern_list (identifier_genes1) identifier_genes1 (identifier_genes2) identifier_genes2 )pattern_list (call (attribute (identifier_itertools) identifier_itertools (identifier_product) identifier_product )attribute (argument_list (identifier_gene_blocks) identifier_gene_blocks (keyword_argument (identifier_repeat) identifier_repeat (integer_2) integer_2 )keyword_argument )argument_list )call (block (if_statement (comparison_operator (identifier_genes1) identifier_genes1 (identifier_genes2) identifier_genes2 )comparison_operator (block (expression_statement (assignment (identifier_bp) identifier_bp (call (identifier_process_pc_pathsbetween) identifier_process_pc_pathsbetween (argument_list (identifier_genes1) identifier_genes1 (keyword_argument (identifier_database_filter) identifier_database_filter (identifier_database_filter) identifier_database_filter )keyword_argument (keyword_argument (identifier_block_size) identifier_block_size (None) None )keyword_argument )argument_list )call )assignment )expression_statement )block (else_clause (block (expression_statement (assignment (identifier_bp) identifier_bp (call (identifier_process_pc_pathsfromto) identifier_process_pc_pathsfromto (argument_list (identifier_genes1) identifier_genes1 (identifier_genes2) identifier_genes2 (keyword_argument (identifier_database_filter) identifier_database_filter (identifier_database_filter) identifier_database_filter )keyword_argument )argument_list )call )assignment )expression_statement )block )else_clause )if_statement (expression_statement (augmented_assignment (identifier_stmts) identifier_stmts (attribute (identifier_bp) identifier_bp (identifier_statements) identifier_statements )attribute )augmented_assignment )expression_statement )block )for_statement )block )else_clause )if_statement )block )function_definition )module
Returns a BiopaxProcessor for a PathwayCommons paths-between query. The paths-between query finds the paths between a set of genes. Here source gene names are given in a single list and all directions of paths between these genes are considered. http://www.pathwaycommons.org/pc2/#graph http://www.pathwaycommons.org/pc2/#graph_kind Parameters ---------- gene_names : list A list of HGNC gene symbols to search for paths between. Examples: ['BRAF', 'MAP2K1'] neighbor_limit : Optional[int] The number of steps to limit the length of the paths between the gene names being queried. Default: 1 database_filter : Optional[list] A list of database identifiers to which the query is restricted. Examples: ['reactome'], ['biogrid', 'pid', 'psp'] If not given, all databases are used in the query. For a full list of databases see http://www.pathwaycommons.org/pc2/datasources block_size : Optional[int] Large paths-between queries (above ~60 genes) can error on the server side. In this case, the query can be replaced by a series of smaller paths-between and paths-from-to queries each of which contains block_size genes. Returns ------- bp : BiopaxProcessor A BiopaxProcessor containing the obtained BioPAX model in bp.model.
(module (function_definition (function_name_promote16) function_name_promote16 (parameters (identifier_u) identifier_u (default_parameter (identifier_fn) identifier_fn (None) None )default_parameter (list_splat_pattern (identifier_args) identifier_args )list_splat_pattern (dictionary_splat_pattern (identifier_kwargs) identifier_kwargs )dictionary_splat_pattern )parameters (block (expression_statement (identifier_r) identifier_r )expression_statement (expression_statement (assignment (identifier_dtype) identifier_dtype (conditional_expression (attribute (identifier_np) identifier_np (identifier_float32) identifier_float32 )attribute (comparison_operator (attribute (identifier_u) identifier_u (identifier_dtype) identifier_dtype )attribute (attribute (identifier_np) identifier_np (identifier_float16) identifier_float16 )attribute )comparison_operator (attribute (identifier_u) identifier_u (identifier_dtype) identifier_dtype )attribute )conditional_expression )assignment )expression_statement (expression_statement (assignment (identifier_up) identifier_up (call (attribute (identifier_np) identifier_np (identifier_asarray) identifier_asarray )attribute (argument_list (identifier_u) identifier_u (keyword_argument (identifier_dtype) identifier_dtype (identifier_dtype) identifier_dtype )keyword_argument )argument_list )call )assignment )expression_statement (if_statement (comparison_operator (identifier_fn) identifier_fn (None) None )comparison_operator (block (return_statement (identifier_up) identifier_up )return_statement )block (else_clause (block (expression_statement (assignment (identifier_v) identifier_v (call (identifier_fn) identifier_fn (argument_list (identifier_up) identifier_up (list_splat (identifier_args) identifier_args )list_splat (dictionary_splat (identifier_kwargs) identifier_kwargs )dictionary_splat )argument_list )call )assignment )expression_statement (if_statement (call (identifier_isinstance) identifier_isinstance (argument_list (identifier_v) identifier_v (identifier_tuple) identifier_tuple )argument_list )call (block (expression_statement (assignment (identifier_vp) identifier_vp (call (identifier_tuple) identifier_tuple (argument_list (list_comprehension (call (attribute (identifier_np) identifier_np (identifier_asarray) identifier_asarray )attribute (argument_list (identifier_vk) identifier_vk (keyword_argument (identifier_dtype) identifier_dtype (attribute (identifier_u) identifier_u (identifier_dtype) identifier_dtype )attribute )keyword_argument )argument_list )call (for_in_clause (identifier_vk) identifier_vk (identifier_v) identifier_v )for_in_clause )list_comprehension )argument_list )call )assignment )expression_statement )block (else_clause (block (expression_statement (assignment (identifier_vp) identifier_vp (call (attribute (identifier_np) identifier_np (identifier_asarray) identifier_asarray )attribute (argument_list (identifier_v) identifier_v (keyword_argument (identifier_dtype) identifier_dtype (attribute (identifier_u) identifier_u (identifier_dtype) identifier_dtype )attribute )keyword_argument )argument_list )call )assignment )expression_statement )block )else_clause )if_statement (return_statement (identifier_vp) identifier_vp )return_statement )block )else_clause )if_statement )block )function_definition )module
r""" Utility function for use with functions that do not support arrays of dtype ``np.float16``. This function has two distinct modes of operation. If called with only the `u` parameter specified, the returned value is either `u` itself if `u` is not of dtype ``np.float16``, or `u` promoted to ``np.float32`` dtype if it is. If the function parameter `fn` is specified then `u` is conditionally promoted as described above, passed as the first argument to function `fn`, and the returned values are converted back to dtype ``np.float16`` if `u` is of that dtype. Note that if parameter `fn` is specified, it may not be be specified as a keyword argument if it is followed by any non-keyword arguments. Parameters ---------- u : array_like Array to be promoted to np.float32 if it is of dtype ``np.float16`` fn : function or None, optional (default None) Function to be called with promoted `u` as first parameter and \*args and \*\*kwargs as additional parameters *args Variable length list of arguments for function `fn` **kwargs Keyword arguments for function `fn` Returns ------- up : ndarray Conditionally dtype-promoted version of `u` if `fn` is None, or value(s) returned by `fn`, converted to the same dtype as `u`, if `fn` is a function
(module (function_definition (function_name__pull) function_name__pull (parameters (identifier_self) identifier_self )parameters (block (expression_statement (assignment (identifier_pull) identifier_pull (call (attribute (identifier_self) identifier_self (identifier_m) identifier_m )attribute (argument_list (string_'pulling remote changes') string_'pulling remote changes' (keyword_argument (identifier_cmdd) identifier_cmdd (call (identifier_dict) identifier_dict (argument_list (keyword_argument (identifier_cmd) identifier_cmd (string_'git pull --tags') string_'git pull --tags' )keyword_argument (keyword_argument (identifier_cwd) identifier_cwd (attribute (identifier_self) identifier_self (identifier_local) identifier_local )attribute )keyword_argument )argument_list )call )keyword_argument (keyword_argument (identifier_critical) identifier_critical (False) False )keyword_argument )argument_list )call )assignment )expression_statement (if_statement (comparison_operator (string_'CONFLICT') string_'CONFLICT' (call (attribute (identifier_pull) identifier_pull (identifier_get) identifier_get )attribute (argument_list (string_'out') string_'out' )argument_list )call )comparison_operator (block (expression_statement (call (attribute (identifier_self) identifier_self (identifier_m) identifier_m )attribute (argument_list (string_'Congratulations! You have merge conflicts in the repository!') string_'Congratulations! You have merge conflicts in the repository!' (keyword_argument (identifier_state) identifier_state (True) True )keyword_argument (keyword_argument (identifier_more) identifier_more (identifier_pull) identifier_pull )keyword_argument )argument_list )call )expression_statement )block )if_statement (return_statement (identifier_pull) identifier_pull )return_statement )block )function_definition )module
Helper function to pull from remote
(module (function_definition (function_name_validate) function_name_validate (parameters (identifier_self) identifier_self (typed_parameter (identifier_path) identifier_path (type (identifier_str) identifier_str )type )typed_parameter (typed_default_parameter (identifier_strictness) identifier_strictness (type (identifier_str) identifier_str )type (string_"speconly") string_"speconly" )typed_default_parameter )parameters (type (identifier_bool) identifier_bool )type (block (expression_statement (assignment (identifier_valid1) identifier_valid1 (True) True )assignment )expression_statement (with_statement (with_clause (with_item (as_pattern (call (attribute (identifier_h5py) identifier_h5py (identifier_File) identifier_File )attribute (argument_list (identifier_path) identifier_path (keyword_argument (identifier_mode) identifier_mode (string_"r") string_"r" )keyword_argument )argument_list )call (as_pattern_target (identifier_f) identifier_f )as_pattern_target )as_pattern )with_item )with_clause (block (expression_statement (assignment (identifier_valid1) identifier_valid1 (call (attribute (identifier_self) identifier_self (identifier_validate_spec) identifier_validate_spec )attribute (argument_list (identifier_f) identifier_f )argument_list )call )assignment )expression_statement (if_statement (not_operator (identifier_valid1) identifier_valid1 )not_operator (block (expression_statement (call (attribute (attribute (identifier_self) identifier_self (identifier_errors) identifier_errors )attribute (identifier_append) identifier_append )attribute (argument_list (string_"For help, see http://linnarssonlab.org/loompy/format/") string_"For help, see http://linnarssonlab.org/loompy/format/" )argument_list )call )expression_statement )block )if_statement )block )with_statement (expression_statement (assignment (identifier_valid2) identifier_valid2 (True) True )assignment )expression_statement (if_statement (comparison_operator (identifier_strictness) identifier_strictness (string_"conventions") string_"conventions" )comparison_operator (block (with_statement (with_clause (with_item (as_pattern (call (attribute (identifier_loompy) identifier_loompy (identifier_connect) identifier_connect )attribute (argument_list (identifier_path) identifier_path (keyword_argument (identifier_mode) identifier_mode (string_"r") string_"r" )keyword_argument )argument_list )call (as_pattern_target (identifier_ds) identifier_ds )as_pattern_target )as_pattern )with_item )with_clause (block (expression_statement (assignment (identifier_valid2) identifier_valid2 (call (attribute (identifier_self) identifier_self (identifier_validate_conventions) identifier_validate_conventions )attribute (argument_list (identifier_ds) identifier_ds )argument_list )call )assignment )expression_statement (if_statement (not_operator (identifier_valid2) identifier_valid2 )not_operator (block (expression_statement (call (attribute (attribute (identifier_self) identifier_self (identifier_errors) identifier_errors )attribute (identifier_append) identifier_append )attribute (argument_list (string_"For help, see http://linnarssonlab.org/loompy/conventions/") string_"For help, see http://linnarssonlab.org/loompy/conventions/" )argument_list )call )expression_statement )block )if_statement )block )with_statement )block )if_statement (return_statement (boolean_operator (identifier_valid1) identifier_valid1 (identifier_valid2) identifier_valid2 )boolean_operator )return_statement )block )function_definition )module
Validate a file for conformance to the Loom specification Args: path: Full path to the file to be validated strictness: "speconly" or "conventions" Remarks: In "speconly" mode, conformance is assessed relative to the file format specification at http://linnarssonlab.org/loompy/format/. In "conventions" mode, conformance is additionally assessed relative to attribute name and data type conventions given at http://linnarssonlab.org/loompy/conventions/.
(module (function_definition (function_name_do_first) function_name_do_first (parameters (identifier_self) identifier_self )parameters (block (expression_statement (assignment (identifier_pid) identifier_pid (call (attribute (identifier_os) identifier_os (identifier_getpid) identifier_getpid )attribute (argument_list )argument_list )call )assignment )expression_statement (expression_statement (assignment (attribute (identifier_self) identifier_self (identifier_basename) identifier_basename )attribute (call (attribute (attribute (identifier_os) identifier_os (identifier_path) identifier_path )attribute (identifier_join) identifier_join )attribute (argument_list (attribute (identifier_self) identifier_self (identifier_tmpdir) identifier_tmpdir )attribute (binary_operator (string_'iiif_netpbm_') string_'iiif_netpbm_' (call (identifier_str) identifier_str (argument_list (identifier_pid) identifier_pid )argument_list )call )binary_operator )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_outfile) identifier_outfile (binary_operator (attribute (identifier_self) identifier_self (identifier_basename) identifier_basename )attribute (string_'.pnm') string_'.pnm' )binary_operator )assignment )expression_statement (expression_statement (assignment (identifier_filetype) identifier_filetype (call (attribute (identifier_self) identifier_self (identifier_file_type) identifier_file_type )attribute (argument_list (attribute (identifier_self) identifier_self (identifier_srcfile) identifier_srcfile )attribute )argument_list )call )assignment )expression_statement (if_statement (parenthesized_expression (comparison_operator (identifier_filetype) identifier_filetype (string_'png') string_'png' )comparison_operator )parenthesized_expression (block (if_statement (parenthesized_expression (call (attribute (identifier_self) identifier_self (identifier_shell_call) identifier_shell_call )attribute (argument_list (binary_operator (binary_operator (binary_operator (binary_operator (attribute (identifier_self) identifier_self (identifier_pngtopnm) identifier_pngtopnm )attribute (string_' ') string_' ' )binary_operator (attribute (identifier_self) identifier_self (identifier_srcfile) identifier_srcfile )attribute )binary_operator (string_' > ') string_' > ' )binary_operator (identifier_outfile) identifier_outfile )binary_operator )argument_list )call )parenthesized_expression (block (raise_statement (call (identifier_IIIFError) identifier_IIIFError (argument_list (keyword_argument (identifier_text) identifier_text (string_"Oops... got error from pngtopnm.") string_"Oops... got error from pngtopnm." )keyword_argument )argument_list )call )raise_statement )block )if_statement )block (elif_clause (parenthesized_expression (comparison_operator (identifier_filetype) identifier_filetype (string_'jpg') string_'jpg' )comparison_operator )parenthesized_expression (block (if_statement (parenthesized_expression (call (attribute (identifier_self) identifier_self (identifier_shell_call) identifier_shell_call )attribute (argument_list (binary_operator (binary_operator (binary_operator (binary_operator (attribute (identifier_self) identifier_self (identifier_jpegtopnm) identifier_jpegtopnm )attribute (string_' ') string_' ' )binary_operator (attribute (identifier_self) identifier_self (identifier_srcfile) identifier_srcfile )attribute )binary_operator (string_' > ') string_' > ' )binary_operator (identifier_outfile) identifier_outfile )binary_operator )argument_list )call )parenthesized_expression (block (raise_statement (call (identifier_IIIFError) identifier_IIIFError (argument_list (keyword_argument (identifier_text) identifier_text (string_"Oops... got error from jpegtopnm.") string_"Oops... got error from jpegtopnm." )keyword_argument )argument_list )call )raise_statement )block )if_statement )block )elif_clause (else_clause (block (raise_statement (call (identifier_IIIFError) identifier_IIIFError (argument_list (keyword_argument (identifier_code) identifier_code (string_'501') string_'501' )keyword_argument (keyword_argument (identifier_text) identifier_text (string_'bad input file format (only know how to read png/jpeg)') string_'bad input file format (only know how to read png/jpeg)' )keyword_argument )argument_list )call )raise_statement )block )else_clause )if_statement (expression_statement (assignment (attribute (identifier_self) identifier_self (identifier_tmpfile) identifier_tmpfile )attribute (identifier_outfile) identifier_outfile )assignment )expression_statement (expression_statement (assignment (tuple_pattern (attribute (identifier_self) identifier_self (identifier_width) identifier_width )attribute (attribute (identifier_self) identifier_self (identifier_height) identifier_height )attribute )tuple_pattern (call (attribute (identifier_self) identifier_self (identifier_image_size) identifier_image_size )attribute (argument_list (attribute (identifier_self) identifier_self (identifier_tmpfile) identifier_tmpfile )attribute )argument_list )call )assignment )expression_statement )block )function_definition )module
Create PNM file from input image file.
(module (function_definition (function_name_update) function_name_update (parameters (identifier_self) identifier_self (default_parameter (identifier_friendly_name) identifier_friendly_name (attribute (identifier_values) identifier_values (identifier_unset) identifier_unset )attribute )default_parameter (default_parameter (identifier_assignment_callback_url) identifier_assignment_callback_url (attribute (identifier_values) identifier_values (identifier_unset) identifier_unset )attribute )default_parameter (default_parameter (identifier_fallback_assignment_callback_url) identifier_fallback_assignment_callback_url (attribute (identifier_values) identifier_values (identifier_unset) identifier_unset )attribute )default_parameter (default_parameter (identifier_configuration) identifier_configuration (attribute (identifier_values) identifier_values (identifier_unset) identifier_unset )attribute )default_parameter (default_parameter (identifier_task_reservation_timeout) identifier_task_reservation_timeout (attribute (identifier_values) identifier_values (identifier_unset) identifier_unset )attribute )default_parameter )parameters (block (return_statement (call (attribute (attribute (identifier_self) identifier_self (identifier__proxy) identifier__proxy )attribute (identifier_update) identifier_update )attribute (argument_list (keyword_argument (identifier_friendly_name) identifier_friendly_name (identifier_friendly_name) identifier_friendly_name )keyword_argument (keyword_argument (identifier_assignment_callback_url) identifier_assignment_callback_url (identifier_assignment_callback_url) identifier_assignment_callback_url )keyword_argument (keyword_argument (identifier_fallback_assignment_callback_url) identifier_fallback_assignment_callback_url (identifier_fallback_assignment_callback_url) identifier_fallback_assignment_callback_url )keyword_argument (keyword_argument (identifier_configuration) identifier_configuration (identifier_configuration) identifier_configuration )keyword_argument (keyword_argument (identifier_task_reservation_timeout) identifier_task_reservation_timeout (identifier_task_reservation_timeout) identifier_task_reservation_timeout )keyword_argument )argument_list )call )return_statement )block )function_definition )module
Update the WorkflowInstance :param unicode friendly_name: A string representing a human readable name for this Workflow. :param unicode assignment_callback_url: A valid URL for the application that will process task assignment events. :param unicode fallback_assignment_callback_url: If the request to the AssignmentCallbackUrl fails, the assignment callback will be made to this URL. :param unicode configuration: JSON document configuring the rules for this Workflow. :param unicode task_reservation_timeout: An integer value controlling how long in seconds TaskRouter will wait for a confirmation response from your application after assigning a Task to a worker. :returns: Updated WorkflowInstance :rtype: twilio.rest.taskrouter.v1.workspace.workflow.WorkflowInstance
(module (function_definition (function_name__validate_user_class) function_name__validate_user_class (parameters (identifier_cls) identifier_cls (identifier_user_class) identifier_user_class )parameters (block (expression_statement (call (attribute (identifier_PraetorianError) identifier_PraetorianError (identifier_require_condition) identifier_require_condition )attribute (argument_list (comparison_operator (call (identifier_getattr) identifier_getattr (argument_list (identifier_user_class) identifier_user_class (string_'lookup') string_'lookup' (None) None )argument_list )call (None) None )comparison_operator (call (attribute (identifier_textwrap) identifier_textwrap (identifier_dedent) identifier_dedent )attribute (argument_list )argument_list )call )argument_list )call )expression_statement (expression_statement (call (attribute (identifier_PraetorianError) identifier_PraetorianError (identifier_require_condition) identifier_require_condition )attribute (argument_list (comparison_operator (call (identifier_getattr) identifier_getattr (argument_list (identifier_user_class) identifier_user_class (string_'identify') string_'identify' (None) None )argument_list )call (None) None )comparison_operator (call (attribute (identifier_textwrap) identifier_textwrap (identifier_dedent) identifier_dedent )attribute (argument_list )argument_list )call )argument_list )call )expression_statement (return_statement (identifier_user_class) identifier_user_class )return_statement )block )function_definition )module
Validates the supplied user_class to make sure that it has the class methods necessary to function correctly. Requirements: - ``lookup`` method. Accepts a string parameter, returns instance - ``identify`` method. Accepts an identity parameter, returns instance
(module (function_definition (function_name__conv) function_name__conv (parameters (identifier_self) identifier_self (identifier_v) identifier_v )parameters (block (if_statement (call (identifier_isinstance) identifier_isinstance (argument_list (identifier_v) identifier_v (identifier_str) identifier_str )argument_list )call (block (return_statement (binary_operator (string_'"%s"') string_'"%s"' (call (attribute (identifier_v) identifier_v (identifier_replace) identifier_replace )attribute (argument_list (string_"'") string_"'" (string_"''") string_"''" )argument_list )call )binary_operator )return_statement )block (elif_clause (call (identifier_isinstance) identifier_isinstance (argument_list (identifier_v) identifier_v (attribute (identifier_datetime) identifier_datetime (identifier_datetime) identifier_datetime )attribute )argument_list )call (block (if_statement (comparison_operator (attribute (identifier_v) identifier_v (identifier_tzinfo) identifier_tzinfo )attribute (None) None )comparison_operator (block (raise_statement (expression_list (identifier_ValueError) identifier_ValueError (string_"datetime instances with tzinfo not supported") string_"datetime instances with tzinfo not supported" )expression_list )raise_statement )block )if_statement (return_statement (binary_operator (string_'"%s"') string_'"%s"' (call (attribute (attribute (identifier_self) identifier_self (identifier_db_module) identifier_db_module )attribute (identifier_Timestamp) identifier_Timestamp )attribute (argument_list (attribute (identifier_v) identifier_v (identifier_year) identifier_year )attribute (attribute (identifier_v) identifier_v (identifier_month) identifier_month )attribute (attribute (identifier_v) identifier_v (identifier_day) identifier_day )attribute (attribute (identifier_v) identifier_v (identifier_hour) identifier_hour )attribute (attribute (identifier_v) identifier_v (identifier_minute) identifier_minute )attribute (attribute (identifier_v) identifier_v (identifier_second) identifier_second )attribute )argument_list )call )binary_operator )return_statement )block )elif_clause (elif_clause (call (identifier_isinstance) identifier_isinstance (argument_list (identifier_v) identifier_v (attribute (identifier_datetime) identifier_datetime (identifier_date) identifier_date )attribute )argument_list )call (block (return_statement (binary_operator (string_'"%s"') string_'"%s"' (call (attribute (attribute (identifier_self) identifier_self (identifier_db_module) identifier_db_module )attribute (identifier_Date) identifier_Date )attribute (argument_list (attribute (identifier_v) identifier_v (identifier_year) identifier_year )attribute (attribute (identifier_v) identifier_v (identifier_month) identifier_month )attribute (attribute (identifier_v) identifier_v (identifier_day) identifier_day )attribute )argument_list )call )binary_operator )return_statement )block )elif_clause (else_clause (block (return_statement (identifier_v) identifier_v )return_statement )block )else_clause )if_statement )block )function_definition )module
Convert Python values to MySQL values
(module (function_definition (function_name_update_vip_request) function_name_update_vip_request (parameters (identifier_self) identifier_self (identifier_vip_request) identifier_vip_request (identifier_vip_request_id) identifier_vip_request_id )parameters (block (expression_statement (assignment (identifier_uri) identifier_uri (binary_operator (string_'api/v3/vip-request/%s/') string_'api/v3/vip-request/%s/' (identifier_vip_request_id) identifier_vip_request_id )binary_operator )assignment )expression_statement (expression_statement (assignment (identifier_data) identifier_data (call (identifier_dict) identifier_dict (argument_list )argument_list )call )assignment )expression_statement (expression_statement (assignment (subscript (identifier_data) identifier_data (string_'vips') string_'vips' )subscript (call (identifier_list) identifier_list (argument_list )argument_list )call )assignment )expression_statement (expression_statement (call (attribute (subscript (identifier_data) identifier_data (string_'vips') string_'vips' )subscript (identifier_append) identifier_append )attribute (argument_list (identifier_vip_request) identifier_vip_request )argument_list )call )expression_statement (return_statement (call (attribute (call (identifier_super) identifier_super (argument_list (identifier_ApiVipRequest) identifier_ApiVipRequest (identifier_self) identifier_self )argument_list )call (identifier_put) identifier_put )attribute (argument_list (identifier_uri) identifier_uri (identifier_data) identifier_data )argument_list )call )return_statement )block )function_definition )module
Method to update vip request param vip_request: vip_request object param vip_request_id: vip_request id
(module (function_definition (function_name_parse_compound_table_file) function_name_parse_compound_table_file (parameters (identifier_path) identifier_path (identifier_f) identifier_f )parameters (block (expression_statement (assignment (identifier_context) identifier_context (call (identifier_FilePathContext) identifier_FilePathContext (argument_list (identifier_path) identifier_path )argument_list )call )assignment )expression_statement (for_statement (pattern_list (identifier_i) identifier_i (identifier_row) identifier_row )pattern_list (call (identifier_enumerate) identifier_enumerate (argument_list (call (attribute (identifier_csv) identifier_csv (identifier_DictReader) identifier_DictReader )attribute (argument_list (identifier_f) identifier_f (keyword_argument (identifier_delimiter) identifier_delimiter (call (identifier_str) identifier_str (argument_list (string_'\t') string_'\t' )argument_list )call )keyword_argument )argument_list )call )argument_list )call (block (if_statement (boolean_operator (comparison_operator (string_'id') string_'id' (identifier_row) identifier_row )comparison_operator (comparison_operator (call (attribute (subscript (identifier_row) identifier_row (string_'id') string_'id' )subscript (identifier_strip) identifier_strip )attribute (argument_list )argument_list )call (string_'') string_'' )comparison_operator )boolean_operator (block (raise_statement (call (identifier_ParseError) identifier_ParseError (argument_list (string_'Expected `id` column in table') string_'Expected `id` column in table' )argument_list )call )raise_statement )block )if_statement (expression_statement (assignment (identifier_props) identifier_props (dictionary_comprehension (pair (identifier_key) identifier_key (identifier_value) identifier_value )pair (for_in_clause (pattern_list (identifier_key) identifier_key (identifier_value) identifier_value )pattern_list (call (identifier_iteritems) identifier_iteritems (argument_list (identifier_row) identifier_row )argument_list )call )for_in_clause (if_clause (comparison_operator (identifier_value) identifier_value (string_'') string_'' )comparison_operator )if_clause )dictionary_comprehension )assignment )expression_statement (if_statement (comparison_operator (string_'charge') string_'charge' (identifier_props) identifier_props )comparison_operator (block (expression_statement (assignment (subscript (identifier_props) identifier_props (string_'charge') string_'charge' )subscript (call (identifier_int) identifier_int (argument_list (subscript (identifier_props) identifier_props (string_'charge') string_'charge' )subscript )argument_list )call )assignment )expression_statement )block )if_statement (expression_statement (assignment (identifier_mark) identifier_mark (call (identifier_FileMark) identifier_FileMark (argument_list (identifier_context) identifier_context (binary_operator (identifier_i) identifier_i (integer_2) integer_2 )binary_operator (None) None )argument_list )call )assignment )expression_statement (expression_statement (yield (call (identifier_CompoundEntry) identifier_CompoundEntry (argument_list (identifier_props) identifier_props (identifier_mark) identifier_mark )argument_list )call )yield )expression_statement )block )for_statement )block )function_definition )module
Parse a tab-separated file containing compound IDs and properties The compound properties are parsed according to the header which specifies which property is contained in each column.
(module (function_definition (function_name_random_shift) function_name_random_shift (parameters (identifier_image) identifier_image (default_parameter (identifier_wsr) identifier_wsr (float_0.1) float_0.1 )default_parameter (default_parameter (identifier_hsr) identifier_hsr (float_0.1) float_0.1 )default_parameter )parameters (block (expression_statement (assignment (pattern_list (identifier_height) identifier_height (identifier_width) identifier_width (identifier__) identifier__ )pattern_list (call (attribute (identifier_common_layers) identifier_common_layers (identifier_shape_list) identifier_shape_list )attribute (argument_list (identifier_image) identifier_image )argument_list )call )assignment )expression_statement (expression_statement (assignment (pattern_list (identifier_width_range) identifier_width_range (identifier_height_range) identifier_height_range )pattern_list (expression_list (binary_operator (identifier_wsr) identifier_wsr (identifier_width) identifier_width )binary_operator (binary_operator (identifier_hsr) identifier_hsr (identifier_height) identifier_height )binary_operator )expression_list )assignment )expression_statement (expression_statement (assignment (identifier_height_translations) identifier_height_translations (call (attribute (identifier_tf) identifier_tf (identifier_random_uniform) identifier_random_uniform )attribute (argument_list (tuple (integer_1) integer_1 )tuple (unary_operator (identifier_height_range) identifier_height_range )unary_operator (identifier_height_range) identifier_height_range )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_width_translations) identifier_width_translations (call (attribute (identifier_tf) identifier_tf (identifier_random_uniform) identifier_random_uniform )attribute (argument_list (tuple (integer_1) integer_1 )tuple (unary_operator (identifier_width_range) identifier_width_range )unary_operator (identifier_width_range) identifier_width_range )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_translations) identifier_translations (call (attribute (identifier_tf) identifier_tf (identifier_concat) identifier_concat )attribute (argument_list (tuple (identifier_height_translations) identifier_height_translations (identifier_width_translations) identifier_width_translations )tuple (keyword_argument (identifier_axis) identifier_axis (integer_0) integer_0 )keyword_argument )argument_list )call )assignment )expression_statement (return_statement (call (attribute (attribute (attribute (identifier_tf) identifier_tf (identifier_contrib) identifier_contrib )attribute (identifier_image) identifier_image )attribute (identifier_translate) identifier_translate )attribute (argument_list (identifier_image) identifier_image (keyword_argument (identifier_translations) identifier_translations (identifier_translations) identifier_translations )keyword_argument )argument_list )call )return_statement )block )function_definition )module
Apply random horizontal and vertical shift to images. This is the default data-augmentation strategy used on CIFAR in Glow. Args: image: a 3-D Tensor wsr: Width shift range, as a float fraction of the width. hsr: Height shift range, as a float fraction of the width. Returns: images: images translated by the provided wsr and hsr.
(module (function_definition (function_name_assertFileSizeEqual) function_name_assertFileSizeEqual (parameters (identifier_self) identifier_self (identifier_filename) identifier_filename (identifier_size) identifier_size (default_parameter (identifier_msg) identifier_msg (None) None )default_parameter )parameters (block (expression_statement (assignment (identifier_fsize) identifier_fsize (call (attribute (identifier_self) identifier_self (identifier__get_file_size) identifier__get_file_size )attribute (argument_list (identifier_filename) identifier_filename )argument_list )call )assignment )expression_statement (expression_statement (call (attribute (identifier_self) identifier_self (identifier_assertEqual) identifier_assertEqual )attribute (argument_list (identifier_fsize) identifier_fsize (identifier_size) identifier_size (keyword_argument (identifier_msg) identifier_msg (identifier_msg) identifier_msg )keyword_argument )argument_list )call )expression_statement )block )function_definition )module
Fail if ``filename`` does not have the given ``size`` as determined by the '==' operator. Parameters ---------- filename : str, bytes, file-like size : int, float msg : str If not provided, the :mod:`marbles.mixins` or :mod:`unittest` standard message will be used. Raises ------ TypeError If ``filename`` is not a str or bytes object and is not file-like.
(module (function_definition (function_name__compress_json) function_name__compress_json (parameters (identifier_self) identifier_self (identifier_j) identifier_j )parameters (block (expression_statement (assignment (identifier_compressed_json) identifier_compressed_json (call (attribute (identifier_copy) identifier_copy (identifier_copy) identifier_copy )attribute (argument_list (identifier_j) identifier_j )argument_list )call )assignment )expression_statement (expression_statement (call (attribute (identifier_compressed_json) identifier_compressed_json (identifier_pop) identifier_pop )attribute (argument_list (string_'users') string_'users' (None) None )argument_list )call )expression_statement (expression_statement (assignment (identifier_compressed_data) identifier_compressed_data (call (attribute (identifier_zlib) identifier_zlib (identifier_compress) identifier_compress )attribute (argument_list (call (attribute (call (attribute (identifier_json) identifier_json (identifier_dumps) identifier_dumps )attribute (argument_list (subscript (identifier_j) identifier_j (string_'users') string_'users' )subscript )argument_list )call (identifier_encode) identifier_encode )attribute (argument_list (string_'utf-8') string_'utf-8' )argument_list )call (attribute (identifier_self) identifier_self (identifier_zlib_compression_strength) identifier_zlib_compression_strength )attribute )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_b64_data) identifier_b64_data (call (attribute (call (attribute (identifier_base64) identifier_base64 (identifier_b64encode) identifier_b64encode )attribute (argument_list (identifier_compressed_data) identifier_compressed_data )argument_list )call (identifier_decode) identifier_decode )attribute (argument_list (string_'utf-8') string_'utf-8' )argument_list )call )assignment )expression_statement (expression_statement (assignment (subscript (identifier_compressed_json) identifier_compressed_json (string_'blob') string_'blob' )subscript (identifier_b64_data) identifier_b64_data )assignment )expression_statement (return_statement (identifier_compressed_json) identifier_compressed_json )return_statement )block )function_definition )module
Compress the BLOB data portion of the usernotes. Arguments: j: the JSON in Schema v5 format (dict) Returns a dict with the 'users' key removed and 'blob' key added
(module (function_definition (function_name_check_values_selection_field) function_name_check_values_selection_field (parameters (identifier_cr) identifier_cr (identifier_table_name) identifier_table_name (identifier_field_name) identifier_field_name (identifier_allowed_values) identifier_allowed_values )parameters (block (expression_statement (assignment (identifier_res) identifier_res (True) True )assignment )expression_statement (expression_statement (call (attribute (identifier_cr) identifier_cr (identifier_execute) identifier_execute )attribute (argument_list (binary_operator (string_"SELECT %s, count(*) FROM %s GROUP BY %s;") string_"SELECT %s, count(*) FROM %s GROUP BY %s;" (tuple (identifier_field_name) identifier_field_name (identifier_table_name) identifier_table_name (identifier_field_name) identifier_field_name )tuple )binary_operator )argument_list )call )expression_statement (for_statement (identifier_row) identifier_row (call (attribute (identifier_cr) identifier_cr (identifier_fetchall) identifier_fetchall )attribute (argument_list )argument_list )call (block (if_statement (comparison_operator (subscript (identifier_row) identifier_row (integer_0) integer_0 )subscript (identifier_allowed_values) identifier_allowed_values )comparison_operator (block (expression_statement (call (attribute (identifier_logger) identifier_logger (identifier_error) identifier_error )attribute (argument_list (concatenated_string (string_"Invalid value '%s' in the table '%s' ") string_"Invalid value '%s' in the table '%s' " (string_"for the field '%s'. (%s rows).") string_"for the field '%s'. (%s rows)." )concatenated_string (subscript (identifier_row) identifier_row (integer_0) integer_0 )subscript (identifier_table_name) identifier_table_name (identifier_field_name) identifier_field_name (subscript (identifier_row) identifier_row (integer_1) integer_1 )subscript )argument_list )call )expression_statement (expression_statement (assignment (identifier_res) identifier_res (False) False )assignment )expression_statement )block )if_statement )block )for_statement (return_statement (identifier_res) identifier_res )return_statement )block )function_definition )module
check if the field selection 'field_name' of the table 'table_name' has only the values 'allowed_values'. If not return False and log an error. If yes, return True. .. versionadded:: 8.0
(module (function_definition (function_name_build_command) function_name_build_command (parameters (identifier_chunks) identifier_chunks )parameters (block (if_statement (not_operator (identifier_chunks) identifier_chunks )not_operator (block (raise_statement (call (identifier_ValueError) identifier_ValueError (argument_list (call (attribute (string_"No command parts: {} ({})") string_"No command parts: {} ({})" (identifier_format) identifier_format )attribute (argument_list (identifier_chunks) identifier_chunks (call (identifier_type) identifier_type (argument_list (identifier_chunks) identifier_chunks )argument_list )call )argument_list )call )argument_list )call )raise_statement )block )if_statement (if_statement (call (identifier_isinstance) identifier_isinstance (argument_list (identifier_chunks) identifier_chunks (identifier_str) identifier_str )argument_list )call (block (return_statement (identifier_chunks) identifier_chunks )return_statement )block )if_statement (expression_statement (assignment (identifier_parsed_pieces) identifier_parsed_pieces (list )list )assignment )expression_statement (for_statement (identifier_cmd_part) identifier_cmd_part (identifier_chunks) identifier_chunks (block (if_statement (comparison_operator (identifier_cmd_part) identifier_cmd_part (None) None )comparison_operator (block (continue_statement )continue_statement )block )if_statement (try_statement (block (expression_statement (call (attribute (identifier_parsed_pieces) identifier_parsed_pieces (identifier_append) identifier_append )attribute (argument_list (call (attribute (identifier_cmd_part) identifier_cmd_part (identifier_strip) identifier_strip )attribute (argument_list (string_" ") string_" " )argument_list )call )argument_list )call )expression_statement )block (except_clause (identifier_AttributeError) identifier_AttributeError (block (expression_statement (assignment (pattern_list (identifier_option) identifier_option (identifier_argument) identifier_argument )pattern_list (identifier_cmd_part) identifier_cmd_part )assignment )expression_statement (if_statement (boolean_operator (comparison_operator (identifier_argument) identifier_argument (None) None )comparison_operator (comparison_operator (identifier_argument) identifier_argument (string_"") string_"" )comparison_operator )boolean_operator (block (continue_statement )continue_statement )block )if_statement (expression_statement (assignment (pattern_list (identifier_option) identifier_option (identifier_argument) identifier_argument )pattern_list (expression_list (call (attribute (identifier_option) identifier_option (identifier_strip) identifier_strip )attribute (argument_list (string_" ") string_" " )argument_list )call (call (attribute (call (identifier_str) identifier_str (argument_list (identifier_argument) identifier_argument )argument_list )call (identifier_strip) identifier_strip )attribute (argument_list (string_" ") string_" " )argument_list )call )expression_list )assignment )expression_statement (expression_statement (call (attribute (identifier_parsed_pieces) identifier_parsed_pieces (identifier_append) identifier_append )attribute (argument_list (call (attribute (string_"{} {}") string_"{} {}" (identifier_format) identifier_format )attribute (argument_list (identifier_option) identifier_option (identifier_argument) identifier_argument )argument_list )call )argument_list )call )expression_statement )block )except_clause )try_statement )block )for_statement (return_statement (call (attribute (string_" ") string_" " (identifier_join) identifier_join )attribute (argument_list (identifier_parsed_pieces) identifier_parsed_pieces )argument_list )call )return_statement )block )function_definition )module
Create a command from various parts. The parts provided may include a base, flags, option-bound arguments, and positional arguments. Each element must be either a string or a two-tuple. Raw strings are interpreted as either the command base, a pre-joined pair (or multiple pairs) of option and argument, a series of positional arguments, or a combination of those elements. The only modification they undergo is trimming of any space characters from each end. :param Iterable[str | (str, str | NoneType)] chunks: the collection of the command components to interpret, modify, and join to create a single meaningful command :return str: the single meaningful command built from the given components :raise ValueError: if no command parts are provided
(module (function_definition (function_name_post_save_moderation) function_name_post_save_moderation (parameters (identifier_self) identifier_self (identifier_sender) identifier_sender (identifier_comment) identifier_comment (identifier_request) identifier_request (dictionary_splat_pattern (identifier_kwargs) identifier_kwargs )dictionary_splat_pattern )parameters (block (expression_statement (assignment (identifier_model) identifier_model (call (attribute (attribute (identifier_comment) identifier_comment (identifier_content_type) identifier_content_type )attribute (identifier_model_class) identifier_model_class )attribute (argument_list )argument_list )call )assignment )expression_statement (if_statement (comparison_operator (identifier_model) identifier_model (attribute (identifier_self) identifier_self (identifier__registry) identifier__registry )attribute )comparison_operator (block (return_statement )return_statement )block )if_statement (expression_statement (call (attribute (subscript (attribute (identifier_self) identifier_self (identifier__registry) identifier__registry )attribute (identifier_model) identifier_model )subscript (identifier_email) identifier_email )attribute (argument_list (identifier_comment) identifier_comment (attribute (identifier_comment) identifier_comment (identifier_content_object) identifier_content_object )attribute (identifier_request) identifier_request )argument_list )call )expression_statement )block )function_definition )module
Apply any necessary post-save moderation steps to new comments.
(module (function_definition (function_name_listTargets) function_name_listTargets (parameters (identifier_self) identifier_self )parameters (block (expression_statement (assignment (identifier_sql) identifier_sql (call (attribute (string_'select * from {}') string_'select * from {}' (identifier_format) identifier_format )attribute (argument_list (attribute (identifier_self) identifier_self (identifier_TABLE_ITEMS) identifier_TABLE_ITEMS )attribute )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_cursor) identifier_cursor (call (attribute (attribute (identifier_self) identifier_self (identifier_db) identifier_db )attribute (identifier_execute) identifier_execute )attribute (argument_list (identifier_sql) identifier_sql )argument_list )call )assignment )expression_statement (return_statement (list_comprehension (tuple (identifier_iid) identifier_iid (identifier_name) identifier_name (identifier_path) identifier_path )tuple (for_in_clause (pattern_list (identifier_iid) identifier_iid (identifier_name) identifier_name (identifier_path) identifier_path )pattern_list (identifier_cursor) identifier_cursor )for_in_clause )list_comprehension )return_statement )block )function_definition )module
Returns a list of all the items secured in the vault
(module (function_definition (function_name_tokenize) function_name_tokenize (parameters (identifier_self) identifier_self (identifier_config) identifier_config )parameters (block (expression_statement (assignment (identifier_tokens) identifier_tokens (list )list )assignment )expression_statement (expression_statement (assignment (identifier_reg_ex) identifier_reg_ex (call (attribute (identifier_re) identifier_re (identifier_compile) identifier_compile )attribute (argument_list (subscript (attribute (identifier_self) identifier_self (identifier_TOKENS) identifier_TOKENS )attribute (integer_0) integer_0 )subscript (binary_operator (attribute (identifier_re) identifier_re (identifier_M) identifier_M )attribute (attribute (identifier_re) identifier_re (identifier_I) identifier_I )attribute )binary_operator )argument_list )call )assignment )expression_statement (for_statement (identifier_token) identifier_token (call (attribute (identifier_re) identifier_re (identifier_finditer) identifier_finditer )attribute (argument_list (identifier_reg_ex) identifier_reg_ex (identifier_config) identifier_config )argument_list )call (block (expression_statement (assignment (identifier_value) identifier_value (call (attribute (identifier_token) identifier_token (identifier_group) identifier_group )attribute (argument_list (integer_0) integer_0 )argument_list )call )assignment )expression_statement (if_statement (call (attribute (identifier_token) identifier_token (identifier_group) identifier_group )attribute (argument_list (string_"operator") string_"operator" )argument_list )call (block (expression_statement (assignment (identifier_t_type) identifier_t_type (string_"operator") string_"operator" )assignment )expression_statement )block (elif_clause (call (attribute (identifier_token) identifier_token (identifier_group) identifier_group )attribute (argument_list (string_"literal") string_"literal" )argument_list )call (block (expression_statement (assignment (identifier_t_type) identifier_t_type (string_"literal") string_"literal" )assignment )expression_statement )block )elif_clause (elif_clause (call (attribute (identifier_token) identifier_token (identifier_group) identifier_group )attribute (argument_list (string_"newline") string_"newline" )argument_list )call (block (expression_statement (assignment (identifier_t_type) identifier_t_type (string_"newline") string_"newline" )assignment )expression_statement )block )elif_clause (elif_clause (call (attribute (identifier_token) identifier_token (identifier_group) identifier_group )attribute (argument_list (string_"function") string_"function" )argument_list )call (block (expression_statement (assignment (identifier_t_type) identifier_t_type (string_"function") string_"function" )assignment )expression_statement )block )elif_clause (elif_clause (call (attribute (identifier_token) identifier_token (identifier_group) identifier_group )attribute (argument_list (string_"unknown") string_"unknown" )argument_list )call (block (expression_statement (assignment (identifier_t_type) identifier_t_type (string_"unknown") string_"unknown" )assignment )expression_statement )block )elif_clause (else_clause (block (continue_statement )continue_statement )block )else_clause )if_statement (expression_statement (call (attribute (identifier_tokens) identifier_tokens (identifier_append) identifier_append )attribute (argument_list (dictionary (pair (string_"type") string_"type" (identifier_t_type) identifier_t_type )pair (pair (string_"value") string_"value" (identifier_value) identifier_value )pair (pair (string_"match") string_"match" (identifier_token) identifier_token )pair (pair (string_"start") string_"start" (call (attribute (identifier_token) identifier_token (identifier_start) identifier_start )attribute (argument_list )argument_list )call )pair )dictionary )argument_list )call )expression_statement )block )for_statement (expression_statement (assignment (attribute (identifier_self) identifier_self (identifier_tokens) identifier_tokens )attribute (identifier_tokens) identifier_tokens )assignment )expression_statement )block )function_definition )module
Break the config into a series of tokens
(module (function_definition (function_name_discovery) function_name_discovery (parameters (identifier_self) identifier_self (default_parameter (identifier_url) identifier_url (None) None )default_parameter )parameters (block (if_statement (identifier_url) identifier_url (block (expression_statement (assignment (identifier_data) identifier_data (attribute (call (attribute (attribute (identifier_self) identifier_self (identifier_session) identifier_session )attribute (identifier_get) identifier_get )attribute (argument_list (identifier_url) identifier_url )argument_list )call (identifier_content) identifier_content )attribute )assignment )expression_statement )block (elif_clause (attribute (identifier_self) identifier_self (identifier_discovery_url) identifier_discovery_url )attribute (block (expression_statement (assignment (identifier_response) identifier_response (call (attribute (attribute (identifier_self) identifier_self (identifier_session) identifier_session )attribute (identifier_get) identifier_get )attribute (argument_list (attribute (identifier_self) identifier_self (identifier_discovery_url) identifier_discovery_url )attribute )argument_list )call )assignment )expression_statement (if_statement (comparison_operator (attribute (identifier_self) identifier_self (identifier_format) identifier_format )attribute (string_'xml') string_'xml' )comparison_operator (block (expression_statement (assignment (identifier_data) identifier_data (call (identifier_xml) identifier_xml (argument_list (attribute (identifier_response) identifier_response (identifier_text) identifier_text )attribute )argument_list )call )assignment )expression_statement )block (else_clause (block (expression_statement (assignment (identifier_data) identifier_data (call (attribute (identifier_response) identifier_response (identifier_json) identifier_json )attribute (argument_list )argument_list )call )assignment )expression_statement )block )else_clause )if_statement )block )elif_clause (else_clause (block (expression_statement (assignment (identifier_data) identifier_data (call (attribute (identifier_self) identifier_self (identifier_get) identifier_get )attribute (argument_list (string_'discovery') string_'discovery' )argument_list )call )assignment )expression_statement )block )else_clause )if_statement (return_statement (identifier_data) identifier_data )return_statement )block )function_definition )module
Retrieve the standard discovery file that provides routing information. >>> Three().discovery() {'discovery': 'data'}
(module (function_definition (function_name_motif_from_consensus) function_name_motif_from_consensus (parameters (identifier_cons) identifier_cons (default_parameter (identifier_n) identifier_n (integer_12) integer_12 )default_parameter )parameters (block (expression_statement (assignment (identifier_width) identifier_width (call (identifier_len) identifier_len (argument_list (identifier_cons) identifier_cons )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_nucs) identifier_nucs (dictionary (pair (string_"A") string_"A" (integer_0) integer_0 )pair (pair (string_"C") string_"C" (integer_1) integer_1 )pair (pair (string_"G") string_"G" (integer_2) integer_2 )pair (pair (string_"T") string_"T" (integer_3) integer_3 )pair )dictionary )assignment )expression_statement (expression_statement (assignment (identifier_pfm) identifier_pfm (list_comprehension (list_comprehension (integer_0) integer_0 (for_in_clause (identifier__) identifier__ (call (identifier_range) identifier_range (argument_list (integer_4) integer_4 )argument_list )call )for_in_clause )list_comprehension (for_in_clause (identifier__) identifier__ (call (identifier_range) identifier_range (argument_list (identifier_width) identifier_width )argument_list )call )for_in_clause )list_comprehension )assignment )expression_statement (expression_statement (assignment (identifier_m) identifier_m (call (identifier_Motif) identifier_Motif (argument_list )argument_list )call )assignment )expression_statement (for_statement (pattern_list (identifier_i) identifier_i (identifier_char) identifier_char )pattern_list (call (identifier_enumerate) identifier_enumerate (argument_list (identifier_cons) identifier_cons )argument_list )call (block (for_statement (identifier_nuc) identifier_nuc (subscript (attribute (identifier_m) identifier_m (identifier_iupac) identifier_iupac )attribute (call (attribute (identifier_char) identifier_char (identifier_upper) identifier_upper )attribute (argument_list )argument_list )call )subscript (block (expression_statement (assignment (subscript (subscript (identifier_pfm) identifier_pfm (identifier_i) identifier_i )subscript (subscript (identifier_nucs) identifier_nucs (identifier_nuc) identifier_nuc )subscript )subscript (binary_operator (identifier_n) identifier_n (call (identifier_len) identifier_len (argument_list (subscript (attribute (identifier_m) identifier_m (identifier_iupac) identifier_iupac )attribute (call (attribute (identifier_char) identifier_char (identifier_upper) identifier_upper )attribute (argument_list )argument_list )call )subscript )argument_list )call )binary_operator )assignment )expression_statement )block )for_statement )block )for_statement (expression_statement (assignment (identifier_m) identifier_m (call (identifier_Motif) identifier_Motif (argument_list (identifier_pfm) identifier_pfm )argument_list )call )assignment )expression_statement (expression_statement (assignment (attribute (identifier_m) identifier_m (identifier_id) identifier_id )attribute (identifier_cons) identifier_cons )assignment )expression_statement (return_statement (identifier_m) identifier_m )return_statement )block )function_definition )module
Convert consensus sequence to motif. Converts a consensus sequences using the nucleotide IUPAC alphabet to a motif. Parameters ---------- cons : str Consensus sequence using the IUPAC alphabet. n : int , optional Count used to convert the sequence to a PFM. Returns ------- m : Motif instance Motif created from the consensus.
(module (function_definition (function_name_render_relation) function_name_render_relation (parameters (identifier_self) identifier_self (identifier_r) identifier_r (dictionary_splat_pattern (identifier_args) identifier_args )dictionary_splat_pattern )parameters (block (if_statement (comparison_operator (identifier_r) identifier_r (None) None )comparison_operator (block (return_statement (string_".") string_"." )return_statement )block )if_statement (expression_statement (assignment (identifier_m) identifier_m (attribute (attribute (identifier_self) identifier_self (identifier_config) identifier_config )attribute (identifier_relsymbolmap) identifier_relsymbolmap )attribute )assignment )expression_statement (if_statement (comparison_operator (identifier_r) identifier_r (identifier_m) identifier_m )comparison_operator (block (return_statement (subscript (identifier_m) identifier_m (identifier_r) identifier_r )subscript )return_statement )block )if_statement (return_statement (identifier_r) identifier_r )return_statement )block )function_definition )module
Render an object property
(module (function_definition (function_name_purge_old) function_name_purge_old (parameters (identifier_self) identifier_self )parameters (block (if_statement (comparison_operator (attribute (identifier_self) identifier_self (identifier_keep_max) identifier_keep_max )attribute (None) None )comparison_operator (block (expression_statement (assignment (identifier_keys) identifier_keys (call (attribute (attribute (identifier_self) identifier_self (identifier_redis_conn) identifier_redis_conn )attribute (identifier_keys) identifier_keys )attribute (argument_list (binary_operator (call (attribute (identifier_self) identifier_self (identifier_get_key) identifier_get_key )attribute (argument_list )argument_list )call (string_':*') string_':*' )binary_operator )argument_list )call )assignment )expression_statement (expression_statement (call (attribute (identifier_keys) identifier_keys (identifier_sort) identifier_sort )attribute (argument_list (keyword_argument (identifier_reverse) identifier_reverse (True) True )keyword_argument )argument_list )call )expression_statement (while_statement (comparison_operator (call (identifier_len) identifier_len (argument_list (identifier_keys) identifier_keys )argument_list )call (attribute (identifier_self) identifier_self (identifier_keep_max) identifier_keep_max )attribute )comparison_operator (block (expression_statement (assignment (identifier_key) identifier_key (call (attribute (identifier_keys) identifier_keys (identifier_pop) identifier_pop )attribute (argument_list )argument_list )call )assignment )expression_statement (expression_statement (call (attribute (attribute (identifier_self) identifier_self (identifier_redis_conn) identifier_redis_conn )attribute (identifier_delete) identifier_delete )attribute (argument_list (identifier_key) identifier_key )argument_list )call )expression_statement )block )while_statement )block )if_statement )block )function_definition )module
Removes keys that are beyond our keep_max limit
(module (function_definition (function_name_msg) function_name_msg (parameters (identifier_self) identifier_self (identifier_message) identifier_message (list_splat_pattern (identifier_args) identifier_args )list_splat_pattern (dictionary_splat_pattern (identifier_kwargs) identifier_kwargs )dictionary_splat_pattern )parameters (block (expression_statement (assignment (identifier_target) identifier_target (call (attribute (identifier_kwargs) identifier_kwargs (identifier_pop) identifier_pop )attribute (argument_list (string_'target') string_'target' (None) None )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_raw) identifier_raw (call (attribute (identifier_kwargs) identifier_kwargs (identifier_pop) identifier_pop )attribute (argument_list (string_'raw') string_'raw' (False) False )argument_list )call )assignment )expression_statement (if_statement (not_operator (identifier_target) identifier_target )not_operator (block (expression_statement (assignment (identifier_target) identifier_target (conditional_expression (attribute (attribute (attribute (identifier_self) identifier_self (identifier_line) identifier_line )attribute (identifier_sender) identifier_sender )attribute (identifier_nick) identifier_nick )attribute (attribute (attribute (identifier_self) identifier_self (identifier_line) identifier_line )attribute (identifier_pm) identifier_pm )attribute (line_continuation_\) line_continuation_\ (attribute (attribute (identifier_self) identifier_self (identifier_line) identifier_line )attribute (identifier_target) identifier_target )attribute )conditional_expression )assignment )expression_statement )block )if_statement (if_statement (not_operator (identifier_raw) identifier_raw )not_operator (block (expression_statement (assignment (identifier_kw) identifier_kw (dictionary (pair (string_'m') string_'m' (identifier_self) identifier_self )pair (pair (string_'b') string_'b' (call (identifier_chr) identifier_chr (argument_list (integer_2) integer_2 )argument_list )call )pair (pair (string_'c') string_'c' (call (identifier_chr) identifier_chr (argument_list (integer_3) integer_3 )argument_list )call )pair (pair (string_'u') string_'u' (call (identifier_chr) identifier_chr (argument_list (integer_31) integer_31 )argument_list )call )pair )dictionary )assignment )expression_statement (expression_statement (call (attribute (identifier_kw) identifier_kw (identifier_update) identifier_update )attribute (argument_list (identifier_kwargs) identifier_kwargs )argument_list )call )expression_statement (try_statement (block (expression_statement (assignment (identifier_message) identifier_message (call (attribute (identifier_message) identifier_message (identifier_format) identifier_format )attribute (argument_list (list_splat (identifier_args) identifier_args )list_splat (dictionary_splat (identifier_kw) identifier_kw )dictionary_splat )argument_list )call )assignment )expression_statement )block (except_clause (identifier_IndexError) identifier_IndexError (block (if_statement (boolean_operator (comparison_operator (call (identifier_len) identifier_len (argument_list (identifier_args) identifier_args )argument_list )call (integer_1) integer_1 )comparison_operator (call (identifier_isinstance) identifier_isinstance (argument_list (subscript (identifier_args) identifier_args (integer_0) integer_0 )subscript (identifier_list) identifier_list )argument_list )call )boolean_operator (block (expression_statement (assignment (identifier_message) identifier_message (call (attribute (identifier_message) identifier_message (identifier_format) identifier_format )attribute (argument_list (list_splat (subscript (identifier_args) identifier_args (integer_0) integer_0 )subscript )list_splat (dictionary_splat (identifier_kw) identifier_kw )dictionary_splat )argument_list )call )assignment )expression_statement )block (else_clause (block (raise_statement )raise_statement )block )else_clause )if_statement )block )except_clause )try_statement )block )if_statement (expression_statement (call (attribute (attribute (identifier_self) identifier_self (identifier_connection) identifier_connection )attribute (identifier_msg) identifier_msg )attribute (argument_list (identifier_target) identifier_target (identifier_message) identifier_message )argument_list )call )expression_statement )block )function_definition )module
Shortcut to send a message through the connection. This function sends the input message through the connection. A target can be defined, else it will send it to the channel or user from the input Line, effectively responding on whatever triggered the command which calls this function to be called. If raw has not been set to True, formatting will be applied using the standard Python Formatting Mini-Language, using the additional given args and kwargs, along with some additional kwargs, such as the match object to easily access Regex matches, color codes and other things. http://docs.python.org/3.3/library/string.html#format-string-syntax
(module (function_definition (function_name_configure) function_name_configure (parameters (default_parameter (identifier_access_key) identifier_access_key (None) None )default_parameter (default_parameter (identifier_secret_key) identifier_secret_key (None) None )default_parameter (default_parameter (identifier_logger) identifier_logger (None) None )default_parameter )parameters (block (if_statement (not_operator (identifier_logger) identifier_logger )not_operator (block (expression_statement (assignment (identifier_logger) identifier_logger (call (attribute (identifier_log) identifier_log (identifier_get_logger) identifier_get_logger )attribute (argument_list (string_'s3') string_'s3' )argument_list )call )assignment )expression_statement )block )if_statement (if_statement (not_operator (call (identifier_all) identifier_all (argument_list (list (identifier_access_key) identifier_access_key (identifier_secret_key) identifier_secret_key )list )argument_list )call )not_operator (block (expression_statement (call (attribute (identifier_logger) identifier_logger (identifier_info) identifier_info )attribute (argument_list (string_'') string_'' )argument_list )call )expression_statement (expression_statement (assignment (identifier_access_key) identifier_access_key (call (identifier_input) identifier_input (argument_list (string_'AWS Access Key: ') string_'AWS Access Key: ' )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_secret_key) identifier_secret_key (call (identifier_input) identifier_input (argument_list (string_'AWS Secret Key: ') string_'AWS Secret Key: ' )argument_list )call )assignment )expression_statement )block )if_statement (expression_statement (call (identifier__write_config) identifier__write_config (argument_list (identifier_access_key) identifier_access_key (identifier_secret_key) identifier_secret_key )argument_list )call )expression_statement (expression_statement (call (attribute (identifier_logger) identifier_logger (identifier_info) identifier_info )attribute (argument_list (string_'') string_'' )argument_list )call )expression_statement (expression_statement (call (attribute (identifier_logger) identifier_logger (identifier_info) identifier_info )attribute (argument_list (string_'Completed writing S3 config file.') string_'Completed writing S3 config file.' )argument_list )call )expression_statement (expression_statement (call (attribute (identifier_logger) identifier_logger (identifier_info) identifier_info )attribute (argument_list (string_'') string_'' )argument_list )call )expression_statement )block )function_definition )module
Configures s3cmd prior to first use. If no arguments are provided, you will be prompted to enter the access key and secret key interactively. Args: access_key (str): AWS access key secret_key (str): AWS secret key
(module (function_definition (function_name__extract_asset_urls) function_name__extract_asset_urls (parameters (identifier_self) identifier_self (identifier_asset_ids) identifier_asset_ids )parameters (block (expression_statement (assignment (identifier_dom) identifier_dom (call (identifier_get_page) identifier_get_page (argument_list (attribute (identifier_self) identifier_self (identifier__session) identifier__session )attribute (identifier_OPENCOURSE_ASSET_URL) identifier_OPENCOURSE_ASSET_URL (keyword_argument (identifier_json) identifier_json (True) True )keyword_argument (keyword_argument (identifier_ids) identifier_ids (call (identifier_quote_plus) identifier_quote_plus (argument_list (call (attribute (string_',') string_',' (identifier_join) identifier_join )attribute (argument_list (identifier_asset_ids) identifier_asset_ids )argument_list )call )argument_list )call )keyword_argument )argument_list )call )assignment )expression_statement (return_statement (list_comprehension (dictionary (pair (string_'id') string_'id' (subscript (identifier_element) identifier_element (string_'id') string_'id' )subscript )pair (pair (string_'url') string_'url' (call (attribute (subscript (identifier_element) identifier_element (string_'url') string_'url' )subscript (identifier_strip) identifier_strip )attribute (argument_list )argument_list )call )pair )dictionary (for_in_clause (identifier_element) identifier_element (subscript (identifier_dom) identifier_dom (string_'elements') string_'elements' )subscript )for_in_clause )list_comprehension )return_statement )block )function_definition )module
Extract asset URLs along with asset ids. @param asset_ids: List of ids to get URLs for. @type assertn: [str] @return: List of dictionaries with asset URLs and ids. @rtype: [{ 'id': '<id>', 'url': '<url>' }]
(module (function_definition (function_name_getLayerName) function_name_getLayerName (parameters (identifier_url) identifier_url )parameters (block (expression_statement (assignment (identifier_urlInfo) identifier_urlInfo (None) None )assignment )expression_statement (expression_statement (assignment (identifier_urlSplit) identifier_urlSplit (None) None )assignment )expression_statement (try_statement (block (expression_statement (assignment (identifier_urlInfo) identifier_urlInfo (call (attribute (identifier_urlparse) identifier_urlparse (identifier_urlparse) identifier_urlparse )attribute (argument_list (identifier_url) identifier_url )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_urlSplit) identifier_urlSplit (call (attribute (call (identifier_str) identifier_str (argument_list (attribute (identifier_urlInfo) identifier_urlInfo (identifier_path) identifier_path )attribute )argument_list )call (identifier_split) identifier_split )attribute (argument_list (string_'/') string_'/' )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_name) identifier_name (subscript (identifier_urlSplit) identifier_urlSplit (binary_operator (call (identifier_len) identifier_len (argument_list (identifier_urlSplit) identifier_urlSplit )argument_list )call (integer_3) integer_3 )binary_operator )subscript )assignment )expression_statement (return_statement (identifier_name) identifier_name )return_statement )block (except_clause (block (return_statement (identifier_url) identifier_url )return_statement )block )except_clause (finally_clause (block (expression_statement (assignment (identifier_urlInfo) identifier_urlInfo (None) None )assignment )expression_statement (expression_statement (assignment (identifier_urlSplit) identifier_urlSplit (None) None )assignment )expression_statement (delete_statement (identifier_urlInfo) identifier_urlInfo )delete_statement (delete_statement (identifier_urlSplit) identifier_urlSplit )delete_statement (expression_statement (call (attribute (identifier_gc) identifier_gc (identifier_collect) identifier_collect )attribute (argument_list )argument_list )call )expression_statement )block )finally_clause )try_statement )block )function_definition )module
Extract the layer name from a url. Args: url (str): The url to parse. Returns: str: The layer name. Examples: >>> url = "http://services.arcgis.com/<random>/arcgis/rest/services/test/FeatureServer/12" >>> arcresthelper.common.getLayerIndex(url) 'test'
(module (function_definition (function_name_get_all_tep) function_name_get_all_tep (parameters (identifier_self) identifier_self )parameters (block (expression_statement (assignment (identifier_teps) identifier_teps (dictionary )dictionary )assignment )expression_statement (for_statement (identifier_p) identifier_p (attribute (identifier_self) identifier_self (identifier_get_enabled_plugins) identifier_get_enabled_plugins )attribute (block (for_statement (pattern_list (identifier_e) identifier_e (identifier_v) identifier_v )pattern_list (call (attribute (subscript (identifier_p) identifier_p (string_"plugin_tep") string_"plugin_tep" )subscript (identifier_items) identifier_items )attribute (argument_list )argument_list )call (block (expression_statement (assignment (identifier_tep) identifier_tep (call (attribute (identifier_teps) identifier_teps (identifier_get) identifier_get )attribute (argument_list (identifier_e) identifier_e (call (identifier_dict) identifier_dict (argument_list )argument_list )call )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_tepHF) identifier_tepHF (call (attribute (identifier_tep) identifier_tep (identifier_get) identifier_get )attribute (argument_list (string_"HTMLFile") string_"HTMLFile" (list )list )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_tepHS) identifier_tepHS (call (attribute (identifier_tep) identifier_tep (identifier_get) identifier_get )attribute (argument_list (string_"HTMLString") string_"HTMLString" (list )list )argument_list )call )assignment )expression_statement (expression_statement (augmented_assignment (identifier_tepHF) identifier_tepHF (list_comprehension (identifier_s) identifier_s (for_in_clause (pattern_list (identifier_f) identifier_f (identifier_s) identifier_s )pattern_list (call (attribute (identifier_v) identifier_v (identifier_items) identifier_items )attribute (argument_list )argument_list )call )for_in_clause (if_clause (comparison_operator (identifier_f) identifier_f (string_"HTMLFile") string_"HTMLFile" )comparison_operator )if_clause )list_comprehension )augmented_assignment )expression_statement (expression_statement (augmented_assignment (identifier_tepHS) identifier_tepHS (list_comprehension (identifier_s) identifier_s (for_in_clause (pattern_list (identifier_f) identifier_f (identifier_s) identifier_s )pattern_list (call (attribute (identifier_v) identifier_v (identifier_items) identifier_items )attribute (argument_list )argument_list )call )for_in_clause (if_clause (comparison_operator (identifier_f) identifier_f (string_"HTMLString") string_"HTMLString" )comparison_operator )if_clause )list_comprehension )augmented_assignment )expression_statement (expression_statement (assignment (subscript (identifier_teps) identifier_teps (identifier_e) identifier_e )subscript (call (identifier_dict) identifier_dict (argument_list (keyword_argument (identifier_HTMLFile) identifier_HTMLFile (identifier_tepHF) identifier_tepHF )keyword_argument (keyword_argument (identifier_HTMLString) identifier_HTMLString (identifier_tepHS) identifier_tepHS )keyword_argument )argument_list )call )assignment )expression_statement )block )for_statement )block )for_statement (return_statement (identifier_teps) identifier_teps )return_statement )block )function_definition )module
Template extension point :returns: dict: {tep: dict(HTMLFile=[], HTMLString=[]), tep...}
(module (function_definition (function_name_updateMetadata) function_name_updateMetadata (parameters (identifier_self) identifier_self (identifier_new) identifier_new )parameters (block (if_statement (comparison_operator (attribute (identifier_self) identifier_self (identifier_node_id) identifier_node_id )attribute (attribute (identifier_new) identifier_new (identifier_node_id) identifier_node_id )attribute )comparison_operator (block (raise_statement (call (identifier_ValueError) identifier_ValueError (argument_list (call (attribute (string_"Broker metadata {!r} doesn't match node_id={}") string_"Broker metadata {!r} doesn't match node_id={}" (identifier_format) identifier_format )attribute (argument_list (identifier_new) identifier_new (attribute (identifier_self) identifier_self (identifier_node_id) identifier_node_id )attribute )argument_list )call )argument_list )call )raise_statement )block )if_statement (expression_statement (assignment (attribute (identifier_self) identifier_self (identifier_node_id) identifier_node_id )attribute (attribute (identifier_new) identifier_new (identifier_node_id) identifier_node_id )attribute )assignment )expression_statement (expression_statement (assignment (attribute (identifier_self) identifier_self (identifier_host) identifier_host )attribute (attribute (identifier_new) identifier_new (identifier_host) identifier_host )attribute )assignment )expression_statement (expression_statement (assignment (attribute (identifier_self) identifier_self (identifier_port) identifier_port )attribute (attribute (identifier_new) identifier_new (identifier_port) identifier_port )attribute )assignment )expression_statement )block )function_definition )module
Update the metadata stored for this broker. Future connections made to the broker will use the host and port defined in the new metadata. Any existing connection is not dropped, however. :param new: :clas:`afkak.common.BrokerMetadata` with the same node ID as the current metadata.
(module (function_definition (function_name_disable_alarm_actions) function_name_disable_alarm_actions (parameters (identifier_self) identifier_self (identifier_alarm_names) identifier_alarm_names )parameters (block (expression_statement (assignment (identifier_params) identifier_params (dictionary )dictionary )assignment )expression_statement (expression_statement (call (attribute (identifier_self) identifier_self (identifier_build_list_params) identifier_build_list_params )attribute (argument_list (identifier_params) identifier_params (identifier_alarm_names) identifier_alarm_names (string_'AlarmNames.member.%s') string_'AlarmNames.member.%s' )argument_list )call )expression_statement (return_statement (call (attribute (identifier_self) identifier_self (identifier_get_status) identifier_get_status )attribute (argument_list (string_'DisableAlarmActions') string_'DisableAlarmActions' (identifier_params) identifier_params )argument_list )call )return_statement )block )function_definition )module
Disables actions for the specified alarms. :type alarms: list :param alarms: List of alarm names.
(module (function_definition (function_name_sfs_folded) function_name_sfs_folded (parameters (identifier_ac) identifier_ac (default_parameter (identifier_n) identifier_n (None) None )default_parameter )parameters (block (expression_statement (assignment (pattern_list (identifier_ac) identifier_ac (identifier_n) identifier_n )pattern_list (call (identifier__check_ac_n) identifier__check_ac_n (argument_list (identifier_ac) identifier_ac (identifier_n) identifier_n )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_mac) identifier_mac (call (attribute (identifier_np) identifier_np (identifier_amin) identifier_amin )attribute (argument_list (identifier_ac) identifier_ac (keyword_argument (identifier_axis) identifier_axis (integer_1) integer_1 )keyword_argument )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_mac) identifier_mac (call (attribute (identifier_mac) identifier_mac (identifier_astype) identifier_astype )attribute (argument_list (identifier_int) identifier_int (keyword_argument (identifier_copy) identifier_copy (False) False )keyword_argument )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_x) identifier_x (binary_operator (binary_operator (identifier_n) identifier_n (integer_2) integer_2 )binary_operator (integer_1) integer_1 )binary_operator )assignment )expression_statement (expression_statement (assignment (identifier_s) identifier_s (call (attribute (identifier_np) identifier_np (identifier_bincount) identifier_bincount )attribute (argument_list (identifier_mac) identifier_mac (keyword_argument (identifier_minlength) identifier_minlength (identifier_x) identifier_x )keyword_argument )argument_list )call )assignment )expression_statement (return_statement (identifier_s) identifier_s )return_statement )block )function_definition )module
Compute the folded site frequency spectrum given reference and alternate allele counts at a set of biallelic variants. Parameters ---------- ac : array_like, int, shape (n_variants, 2) Allele counts array. n : int, optional The total number of chromosomes called. Returns ------- sfs_folded : ndarray, int, shape (n_chromosomes//2,) Array where the kth element is the number of variant sites with a minor allele count of k.
(module (function_definition (function_name_pack_block) function_name_pack_block (parameters (identifier_self) identifier_self (typed_parameter (identifier_block) identifier_block (type (identifier_BaseBlock) identifier_BaseBlock )type )typed_parameter (typed_parameter (list_splat_pattern (identifier_args) identifier_args )list_splat_pattern (type (identifier_Any) identifier_Any )type )typed_parameter (typed_parameter (dictionary_splat_pattern (identifier_kwargs) identifier_kwargs )dictionary_splat_pattern (type (identifier_Any) identifier_Any )type )typed_parameter )parameters (type (identifier_BaseBlock) identifier_BaseBlock )type (block (if_statement (comparison_operator (string_'uncles') string_'uncles' (identifier_kwargs) identifier_kwargs )comparison_operator (block (expression_statement (assignment (identifier_uncles) identifier_uncles (call (attribute (identifier_kwargs) identifier_kwargs (identifier_pop) identifier_pop )attribute (argument_list (string_'uncles') string_'uncles' )argument_list )call )assignment )expression_statement (expression_statement (call (attribute (identifier_kwargs) identifier_kwargs (identifier_setdefault) identifier_setdefault )attribute (argument_list (string_'uncles_hash') string_'uncles_hash' (call (identifier_keccak) identifier_keccak (argument_list (call (attribute (identifier_rlp) identifier_rlp (identifier_encode) identifier_encode )attribute (argument_list (identifier_uncles) identifier_uncles )argument_list )call )argument_list )call )argument_list )call )expression_statement )block (else_clause (block (expression_statement (assignment (identifier_uncles) identifier_uncles (attribute (identifier_block) identifier_block (identifier_uncles) identifier_uncles )attribute )assignment )expression_statement )block )else_clause )if_statement (expression_statement (assignment (identifier_provided_fields) identifier_provided_fields (call (identifier_set) identifier_set (argument_list (call (attribute (identifier_kwargs) identifier_kwargs (identifier_keys) identifier_keys )attribute (argument_list )argument_list )call )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_known_fields) identifier_known_fields (call (identifier_set) identifier_set (argument_list (attribute (attribute (identifier_BlockHeader) identifier_BlockHeader (identifier__meta) identifier__meta )attribute (identifier_field_names) identifier_field_names )attribute )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_unknown_fields) identifier_unknown_fields (call (attribute (identifier_provided_fields) identifier_provided_fields (identifier_difference) identifier_difference )attribute (argument_list (identifier_known_fields) identifier_known_fields )argument_list )call )assignment )expression_statement (if_statement (identifier_unknown_fields) identifier_unknown_fields (block (raise_statement (call (identifier_AttributeError) identifier_AttributeError (argument_list (call (attribute (concatenated_string (string_"Unable to set the field(s) {0} on the `BlockHeader` class. ") string_"Unable to set the field(s) {0} on the `BlockHeader` class. " (string_"Received the following unexpected fields: {1}.") string_"Received the following unexpected fields: {1}." )concatenated_string (identifier_format) identifier_format )attribute (argument_list (call (attribute (string_", ") string_", " (identifier_join) identifier_join )attribute (argument_list (identifier_known_fields) identifier_known_fields )argument_list )call (call (attribute (string_", ") string_", " (identifier_join) identifier_join )attribute (argument_list (identifier_unknown_fields) identifier_unknown_fields )argument_list )call )argument_list )call )argument_list )call )raise_statement )block )if_statement (expression_statement (assignment (identifier_header) identifier_header (call (attribute (attribute (identifier_block) identifier_block (identifier_header) identifier_header )attribute (identifier_copy) identifier_copy )attribute (argument_list (dictionary_splat (identifier_kwargs) identifier_kwargs )dictionary_splat )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_packed_block) identifier_packed_block (call (attribute (identifier_block) identifier_block (identifier_copy) identifier_copy )attribute (argument_list (keyword_argument (identifier_uncles) identifier_uncles (identifier_uncles) identifier_uncles )keyword_argument (keyword_argument (identifier_header) identifier_header (identifier_header) identifier_header )keyword_argument )argument_list )call )assignment )expression_statement (return_statement (identifier_packed_block) identifier_packed_block )return_statement )block )function_definition )module
Pack block for mining. :param bytes coinbase: 20-byte public address to receive block reward :param bytes uncles_hash: 32 bytes :param bytes state_root: 32 bytes :param bytes transaction_root: 32 bytes :param bytes receipt_root: 32 bytes :param int bloom: :param int gas_used: :param bytes extra_data: 32 bytes :param bytes mix_hash: 32 bytes :param bytes nonce: 8 bytes
(module (function_definition (function_name_queuedb_findall) function_name_queuedb_findall (parameters (identifier_path) identifier_path (identifier_queue_id) identifier_queue_id (default_parameter (identifier_name) identifier_name (None) None )default_parameter (default_parameter (identifier_offset) identifier_offset (None) None )default_parameter (default_parameter (identifier_limit) identifier_limit (None) None )default_parameter )parameters (block (expression_statement (assignment (identifier_sql) identifier_sql (string_"SELECT * FROM queue WHERE queue_id = ? ORDER BY rowid ASC") string_"SELECT * FROM queue WHERE queue_id = ? ORDER BY rowid ASC" )assignment )expression_statement (expression_statement (assignment (identifier_args) identifier_args (tuple (identifier_queue_id) identifier_queue_id )tuple )assignment )expression_statement (if_statement (identifier_name) identifier_name (block (expression_statement (augmented_assignment (identifier_sql) identifier_sql (string_' AND name = ?') string_' AND name = ?' )augmented_assignment )expression_statement (expression_statement (augmented_assignment (identifier_args) identifier_args (tuple (identifier_name) identifier_name )tuple )augmented_assignment )expression_statement )block )if_statement (if_statement (identifier_limit) identifier_limit (block (expression_statement (augmented_assignment (identifier_sql) identifier_sql (string_' LIMIT ?') string_' LIMIT ?' )augmented_assignment )expression_statement (expression_statement (augmented_assignment (identifier_args) identifier_args (tuple (identifier_limit) identifier_limit )tuple )augmented_assignment )expression_statement )block )if_statement (if_statement (identifier_offset) identifier_offset (block (expression_statement (augmented_assignment (identifier_sql) identifier_sql (string_' OFFSET ?') string_' OFFSET ?' )augmented_assignment )expression_statement (expression_statement (augmented_assignment (identifier_args) identifier_args (tuple (identifier_offset) identifier_offset )tuple )augmented_assignment )expression_statement )block )if_statement (expression_statement (augmented_assignment (identifier_sql) identifier_sql (string_';') string_';' )augmented_assignment )expression_statement (expression_statement (assignment (identifier_db) identifier_db (call (identifier_queuedb_open) identifier_queuedb_open (argument_list (identifier_path) identifier_path )argument_list )call )assignment )expression_statement (if_statement (comparison_operator (identifier_db) identifier_db (None) None )comparison_operator (block (raise_statement (call (identifier_Exception) identifier_Exception (argument_list (binary_operator (string_"Failed to open %s") string_"Failed to open %s" (identifier_path) identifier_path )binary_operator )argument_list )call )raise_statement )block )if_statement (expression_statement (assignment (identifier_cur) identifier_cur (call (attribute (identifier_db) identifier_db (identifier_cursor) identifier_cursor )attribute (argument_list )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_rows) identifier_rows (call (identifier_queuedb_query_execute) identifier_queuedb_query_execute (argument_list (identifier_cur) identifier_cur (identifier_sql) identifier_sql (identifier_args) identifier_args )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_count) identifier_count (integer_0) integer_0 )assignment )expression_statement (expression_statement (assignment (identifier_ret) identifier_ret (list )list )assignment )expression_statement (for_statement (identifier_row) identifier_row (identifier_rows) identifier_rows (block (expression_statement (assignment (identifier_dat) identifier_dat (dictionary )dictionary )assignment )expression_statement (expression_statement (call (attribute (identifier_dat) identifier_dat (identifier_update) identifier_update )attribute (argument_list (identifier_row) identifier_row )argument_list )call )expression_statement (expression_statement (call (attribute (identifier_ret) identifier_ret (identifier_append) identifier_append )attribute (argument_list (identifier_dat) identifier_dat )argument_list )call )expression_statement )block )for_statement (expression_statement (call (attribute (identifier_db) identifier_db (identifier_close) identifier_close )attribute (argument_list )argument_list )call )expression_statement (return_statement (identifier_ret) identifier_ret )return_statement )block )function_definition )module
Get all queued entries for a queue and a name. If name is None, then find all queue entries Return the rows on success (empty list if not found) Raise on error
(module (function_definition (function_name_cleanup) function_name_cleanup (parameters (identifier_self) identifier_self )parameters (block (if_statement (boolean_operator (attribute (attribute (identifier_self) identifier_self (identifier_data) identifier_data )attribute (identifier_hooks) identifier_hooks )attribute (comparison_operator (call (identifier_len) identifier_len (argument_list (attribute (attribute (attribute (identifier_self) identifier_self (identifier_data) identifier_data )attribute (identifier_hooks) identifier_hooks )attribute (identifier_cleanup) identifier_cleanup )attribute )argument_list )call (integer_0) integer_0 )comparison_operator )boolean_operator (block (expression_statement (assignment (identifier_env) identifier_env (call (attribute (subscript (attribute (attribute (identifier_self) identifier_self (identifier_data) identifier_data )attribute (identifier_env_list) identifier_env_list )attribute (integer_0) integer_0 )subscript (identifier_copy) identifier_copy )attribute (argument_list )argument_list )call )assignment )expression_statement (expression_statement (call (attribute (identifier_env) identifier_env (identifier_update) identifier_update )attribute (argument_list (dictionary (pair (string_'PIPELINE_RESULT') string_'PIPELINE_RESULT' (string_'SUCCESS') string_'SUCCESS' )pair (pair (string_'PIPELINE_SHELL_EXIT_CODE') string_'PIPELINE_SHELL_EXIT_CODE' (string_'0') string_'0' )pair )dictionary )argument_list )call )expression_statement (expression_statement (assignment (identifier_config) identifier_config (call (identifier_ShellConfig) identifier_ShellConfig (argument_list (keyword_argument (identifier_script) identifier_script (attribute (attribute (attribute (identifier_self) identifier_self (identifier_data) identifier_data )attribute (identifier_hooks) identifier_hooks )attribute (identifier_cleanup) identifier_cleanup )attribute )keyword_argument (keyword_argument (identifier_model) identifier_model (attribute (identifier_self) identifier_self (identifier_model) identifier_model )attribute )keyword_argument (keyword_argument (identifier_env) identifier_env (identifier_env) identifier_env )keyword_argument (keyword_argument (identifier_dry_run) identifier_dry_run (attribute (attribute (identifier_self) identifier_self (identifier_options) identifier_options )attribute (identifier_dry_run) identifier_dry_run )attribute )keyword_argument (keyword_argument (identifier_debug) identifier_debug (attribute (attribute (identifier_self) identifier_self (identifier_options) identifier_options )attribute (identifier_debug) identifier_debug )attribute )keyword_argument (keyword_argument (identifier_strict) identifier_strict (attribute (attribute (identifier_self) identifier_self (identifier_options) identifier_options )attribute (identifier_strict) identifier_strict )attribute )keyword_argument (keyword_argument (identifier_temporary_scripts_path) identifier_temporary_scripts_path (attribute (attribute (identifier_self) identifier_self (identifier_options) identifier_options )attribute (identifier_temporary_scripts_path) identifier_temporary_scripts_path )attribute )keyword_argument )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_cleanup_shell) identifier_cleanup_shell (call (identifier_Bash) identifier_Bash (argument_list (identifier_config) identifier_config )argument_list )call )assignment )expression_statement (for_statement (identifier_line) identifier_line (call (attribute (identifier_cleanup_shell) identifier_cleanup_shell (identifier_process) identifier_process )attribute (argument_list )argument_list )call (block (expression_statement (yield (identifier_line) identifier_line )yield )expression_statement )block )for_statement )block )if_statement )block )function_definition )module
Run cleanup script of pipeline when hook is configured.