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(module (function_definition (function_name_parent) function_name_parent (parameters (identifier_self) identifier_self )parameters (block (expression_statement (assignment (identifier_parent_id) identifier_parent_id (call (attribute (attribute (identifier_self) identifier_self (identifier__json_data) identifier__json_data )attribute (identifier_get) identifier_get )attribute (argument_list (string_'parent_id') string_'parent_id' )argument_list )call )assignment )expression_statement (if_statement (comparison_operator (identifier_parent_id) identifier_parent_id (None) None )comparison_operator (block (raise_statement (call (identifier_NotFoundError) identifier_NotFoundError (argument_list (call (attribute (concatenated_string (string_"Cannot find subprocess for this task '{}', ") string_"Cannot find subprocess for this task '{}', " (string_"as this task exist on top level.") string_"as this task exist on top level." )concatenated_string (identifier_format) identifier_format )attribute (argument_list (attribute (identifier_self) identifier_self (identifier_name) identifier_name )attribute )argument_list )call )argument_list )call )raise_statement )block )if_statement (return_statement (call (attribute (attribute (identifier_self) identifier_self (identifier__client) identifier__client )attribute (identifier_activity) identifier_activity )attribute (argument_list (keyword_argument (identifier_pk) identifier_pk (identifier_parent_id) identifier_parent_id )keyword_argument (keyword_argument (identifier_scope) identifier_scope (attribute (identifier_self) identifier_self (identifier_scope_id) identifier_scope_id )attribute )keyword_argument )argument_list )call )return_statement )block )function_definition )module
Retrieve the parent in which this activity is defined. If this is a task on top level, it raises NotFounderror. :return: a :class:`Activity2` :raises NotFoundError: when it is a task in the top level of a project :raises APIError: when other error occurs Example ------- >>> task = project.activity('Subtask') >>> parent_of_task = task.parent()
(module (function_definition (function_name_comparator_eval) function_name_comparator_eval (parameters (identifier_comparator_params) identifier_comparator_params )parameters (block (expression_statement (assignment (pattern_list (identifier_top1) identifier_top1 (identifier_top2) identifier_top2 (identifier_params1) identifier_params1 (identifier_params2) identifier_params2 (identifier_seq1) identifier_seq1 (identifier_seq2) identifier_seq2 (identifier_movements) identifier_movements )pattern_list (identifier_comparator_params) identifier_comparator_params )assignment )expression_statement (expression_statement (assignment (pattern_list (identifier_xrot) identifier_xrot (identifier_yrot) identifier_yrot (identifier_zrot) identifier_zrot (identifier_xtrans) identifier_xtrans (identifier_ytrans) identifier_ytrans (identifier_ztrans) identifier_ztrans )pattern_list (identifier_movements) identifier_movements )assignment )expression_statement (expression_statement (assignment (identifier_obj1) identifier_obj1 (call (identifier_top1) identifier_top1 (argument_list (list_splat (identifier_params1) identifier_params1 )list_splat )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_obj2) identifier_obj2 (call (identifier_top2) identifier_top2 (argument_list (list_splat (identifier_params2) identifier_params2 )list_splat )argument_list )call )assignment )expression_statement (expression_statement (call (attribute (identifier_obj2) identifier_obj2 (identifier_rotate) identifier_rotate )attribute (argument_list (identifier_xrot) identifier_xrot (list (integer_1) integer_1 (integer_0) integer_0 (integer_0) integer_0 )list )argument_list )call )expression_statement (expression_statement (call (attribute (identifier_obj2) identifier_obj2 (identifier_rotate) identifier_rotate )attribute (argument_list (identifier_yrot) identifier_yrot (list (integer_0) integer_0 (integer_1) integer_1 (integer_0) integer_0 )list )argument_list )call )expression_statement (expression_statement (call (attribute (identifier_obj2) identifier_obj2 (identifier_rotate) identifier_rotate )attribute (argument_list (identifier_zrot) identifier_zrot (list (integer_0) integer_0 (integer_0) integer_0 (integer_1) integer_1 )list )argument_list )call )expression_statement (expression_statement (call (attribute (identifier_obj2) identifier_obj2 (identifier_translate) identifier_translate )attribute (argument_list (list (identifier_xtrans) identifier_xtrans (identifier_ytrans) identifier_ytrans (identifier_ztrans) identifier_ztrans )list )argument_list )call )expression_statement (expression_statement (assignment (identifier_model) identifier_model (binary_operator (identifier_obj1) identifier_obj1 (identifier_obj2) identifier_obj2 )binary_operator )assignment )expression_statement (expression_statement (call (attribute (identifier_model) identifier_model (identifier_relabel_all) identifier_relabel_all )attribute (argument_list )argument_list )call )expression_statement (expression_statement (call (attribute (identifier_model) identifier_model (identifier_pack_new_sequences) identifier_pack_new_sequences )attribute (argument_list (binary_operator (identifier_seq1) identifier_seq1 (identifier_seq2) identifier_seq2 )binary_operator )argument_list )call )expression_statement (return_statement (attribute (attribute (identifier_model) identifier_model (identifier_buff_interaction_energy) identifier_buff_interaction_energy )attribute (identifier_total_energy) identifier_total_energy )attribute )return_statement )block )function_definition )module
Gets BUFF score for interaction between two AMPAL objects
(module (function_definition (function_name_version) function_name_version (parameters (identifier_self) identifier_self )parameters (block (expression_statement (assignment (identifier_res) identifier_res (call (attribute (attribute (attribute (identifier_self) identifier_self (identifier_client) identifier_client )attribute (identifier_service) identifier_service )attribute (identifier_Version) identifier_Version )attribute (argument_list )argument_list )call )assignment )expression_statement (return_statement (call (attribute (string_'.') string_'.' (identifier_join) identifier_join )attribute (argument_list (list_comprehension (call (identifier_ustr) identifier_ustr (argument_list (identifier_x) identifier_x )argument_list )call (for_in_clause (identifier_x) identifier_x (subscript (identifier_res) identifier_res (integer_0) integer_0 )subscript )for_in_clause )list_comprehension )argument_list )call )return_statement )block )function_definition )module
Return version of the TR DWE.
(module (function_definition (function_name_build_gtapp) function_name_build_gtapp (parameters (identifier_appname) identifier_appname (identifier_dry_run) identifier_dry_run (dictionary_splat_pattern (identifier_kwargs) identifier_kwargs )dictionary_splat_pattern )parameters (block (expression_statement (assignment (identifier_pfiles_orig) identifier_pfiles_orig (call (identifier__set_pfiles) identifier__set_pfiles (argument_list (identifier_dry_run) identifier_dry_run (dictionary_splat (identifier_kwargs) identifier_kwargs )dictionary_splat )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_gtapp) identifier_gtapp (call (attribute (identifier_GtApp) identifier_GtApp (identifier_GtApp) identifier_GtApp )attribute (argument_list (identifier_appname) identifier_appname )argument_list )call )assignment )expression_statement (expression_statement (call (identifier_update_gtapp) identifier_update_gtapp (argument_list (identifier_gtapp) identifier_gtapp (dictionary_splat (identifier_kwargs) identifier_kwargs )dictionary_splat )argument_list )call )expression_statement (expression_statement (call (identifier__reset_pfiles) identifier__reset_pfiles (argument_list (identifier_pfiles_orig) identifier_pfiles_orig )argument_list )call )expression_statement (return_statement (identifier_gtapp) identifier_gtapp )return_statement )block )function_definition )module
Build an object that can run ScienceTools application Parameters ---------- appname : str Name of the application (e.g., gtbin) dry_run : bool Print command but do not run it kwargs : arguments used to invoke the application Returns `GtApp.GtApp` object that will run the application in question
(module (function_definition (function_name_fetch) function_name_fetch (parameters (identifier_cls) identifier_cls (identifier_channel) identifier_channel (identifier_start) identifier_start (identifier_end) identifier_end (default_parameter (identifier_bits) identifier_bits (None) None )default_parameter (default_parameter (identifier_host) identifier_host (None) None )default_parameter (default_parameter (identifier_port) identifier_port (None) None )default_parameter (default_parameter (identifier_verbose) identifier_verbose (False) False )default_parameter (default_parameter (identifier_connection) identifier_connection (None) None )default_parameter (default_parameter (identifier_type) identifier_type (call (attribute (identifier_Nds2ChannelType) identifier_Nds2ChannelType (identifier_any) identifier_any )attribute (argument_list )argument_list )call )default_parameter )parameters (block (expression_statement (assignment (identifier_new) identifier_new (subscript (call (attribute (attribute (identifier_cls) identifier_cls (identifier_DictClass) identifier_DictClass )attribute (identifier_fetch) identifier_fetch )attribute (argument_list (list (identifier_channel) identifier_channel )list (identifier_start) identifier_start (identifier_end) identifier_end (keyword_argument (identifier_host) identifier_host (identifier_host) identifier_host )keyword_argument (keyword_argument (identifier_port) identifier_port (identifier_port) identifier_port )keyword_argument (keyword_argument (identifier_verbose) identifier_verbose (identifier_verbose) identifier_verbose )keyword_argument (keyword_argument (identifier_connection) identifier_connection (identifier_connection) identifier_connection )keyword_argument )argument_list )call (identifier_channel) identifier_channel )subscript )assignment )expression_statement (if_statement (identifier_bits) identifier_bits (block (expression_statement (assignment (attribute (identifier_new) identifier_new (identifier_bits) identifier_bits )attribute (identifier_bits) identifier_bits )assignment )expression_statement )block )if_statement (return_statement (identifier_new) identifier_new )return_statement )block )function_definition )module
Fetch data from NDS into a `StateVector`. Parameters ---------- channel : `str`, `~gwpy.detector.Channel` the name of the channel to read, or a `Channel` object. start : `~gwpy.time.LIGOTimeGPS`, `float`, `str` GPS start time of required data, any input parseable by `~gwpy.time.to_gps` is fine end : `~gwpy.time.LIGOTimeGPS`, `float`, `str` GPS end time of required data, any input parseable by `~gwpy.time.to_gps` is fine bits : `Bits`, `list`, optional definition of bits for this `StateVector` host : `str`, optional URL of NDS server to use, defaults to observatory site host port : `int`, optional port number for NDS server query, must be given with `host` verify : `bool`, optional, default: `True` check channels exist in database before asking for data connection : `nds2.connection` open NDS connection to use verbose : `bool`, optional print verbose output about NDS progress type : `int`, optional NDS2 channel type integer dtype : `type`, `numpy.dtype`, `str`, optional identifier for desired output data type
(module (function_definition (function_name_factorset_divide) function_name_factorset_divide (parameters (identifier_factorset1) identifier_factorset1 (identifier_factorset2) identifier_factorset2 )parameters (block (expression_statement (identifier_r) identifier_r )expression_statement (if_statement (boolean_operator (not_operator (call (identifier_isinstance) identifier_isinstance (argument_list (identifier_factorset1) identifier_factorset1 (identifier_FactorSet) identifier_FactorSet )argument_list )call )not_operator (not_operator (call (identifier_isinstance) identifier_isinstance (argument_list (identifier_factorset2) identifier_factorset2 (identifier_FactorSet) identifier_FactorSet )argument_list )call )not_operator )boolean_operator (block (raise_statement (call (identifier_TypeError) identifier_TypeError (argument_list (string_"factorset1 and factorset2 must be FactorSet instances") string_"factorset1 and factorset2 must be FactorSet instances" )argument_list )call )raise_statement )block )if_statement (return_statement (call (attribute (identifier_factorset1) identifier_factorset1 (identifier_divide) identifier_divide )attribute (argument_list (identifier_factorset2) identifier_factorset2 (keyword_argument (identifier_inplace) identifier_inplace (False) False )keyword_argument )argument_list )call )return_statement )block )function_definition )module
r""" Base method for dividing two factor sets. Division of two factor sets :math:`\frac{\vec\phi_1}{\vec\phi_2}` basically translates to union of all the factors present in :math:`\vec\phi_2` and :math:`\frac{1}{\phi_i}` of all the factors present in :math:`\vec\phi_2`. Parameters ---------- factorset1: FactorSet The dividend factorset2: FactorSet The divisor Returns ------- The division of factorset1 and factorset2 Examples -------- >>> from pgmpy.factors import FactorSet >>> from pgmpy.factors.discrete import DiscreteFactor >>> from pgmpy.factors import factorset_divide >>> phi1 = DiscreteFactor(['x1', 'x2', 'x3'], [2, 3, 2], range(12)) >>> phi2 = DiscreteFactor(['x3', 'x4', 'x1'], [2, 2, 2], range(8)) >>> factor_set1 = FactorSet(phi1, phi2) >>> phi3 = DiscreteFactor(['x5', 'x6', 'x7'], [2, 2, 2], range(8)) >>> phi4 = DiscreteFactor(['x5', 'x7', 'x8'], [2, 2, 2], range(8)) >>> factor_set2 = FactorSet(phi3, phi4) >>> factor_set3 = factorset_divide(factor_set2, factor_set1) >>> print(factor_set3) set([<DiscreteFactor representing phi(x3:2, x4:2, x1:2) at 0x7f119ad78f90>, <DiscreteFactor representing phi(x5:2, x6:2, x7:2) at 0x7f119ad78e50>, <DiscreteFactor representing phi(x1:2, x2:3, x3:2) at 0x7f119ad78ed0>, <DiscreteFactor representing phi(x5:2, x7:2, x8:2) at 0x7f119ad78e90>])
(module (function_definition (function_name_readInput) function_name_readInput (parameters (identifier_self) identifier_self (identifier_directory) identifier_directory (identifier_projectFileName) identifier_projectFileName (identifier_session) identifier_session (default_parameter (identifier_spatial) identifier_spatial (False) False )default_parameter (default_parameter (identifier_spatialReferenceID) identifier_spatialReferenceID (None) None )default_parameter )parameters (block (expression_statement (assignment (attribute (identifier_self) identifier_self (identifier_project_directory) identifier_project_directory )attribute (identifier_directory) identifier_directory )assignment )expression_statement (with_statement (with_clause (with_item (call (identifier_tmp_chdir) identifier_tmp_chdir (argument_list (identifier_directory) identifier_directory )argument_list )call )with_item )with_clause (block (expression_statement (call (attribute (identifier_session) identifier_session (identifier_add) identifier_add )attribute (argument_list (identifier_self) identifier_self )argument_list )call )expression_statement (expression_statement (call (attribute (identifier_self) identifier_self (identifier_read) identifier_read )attribute (argument_list (identifier_directory) identifier_directory (identifier_projectFileName) identifier_projectFileName (identifier_session) identifier_session (identifier_spatial) identifier_spatial (identifier_spatialReferenceID) identifier_spatialReferenceID )argument_list )call )expression_statement (if_statement (comparison_operator (identifier_spatialReferenceID) identifier_spatialReferenceID (None) None )comparison_operator (block (expression_statement (assignment (identifier_spatialReferenceID) identifier_spatialReferenceID (call (attribute (identifier_self) identifier_self (identifier__automaticallyDeriveSpatialReferenceId) identifier__automaticallyDeriveSpatialReferenceId )attribute (argument_list (identifier_directory) identifier_directory )argument_list )call )assignment )expression_statement )block )if_statement (expression_statement (assignment (identifier_replaceParamFile) identifier_replaceParamFile (call (attribute (identifier_self) identifier_self (identifier__readReplacementFiles) identifier__readReplacementFiles )attribute (argument_list (identifier_directory) identifier_directory (identifier_session) identifier_session (identifier_spatial) identifier_spatial (identifier_spatialReferenceID) identifier_spatialReferenceID )argument_list )call )assignment )expression_statement (expression_statement (call (attribute (identifier_self) identifier_self (identifier__readXput) identifier__readXput )attribute (argument_list (attribute (identifier_self) identifier_self (identifier_INPUT_FILES) identifier_INPUT_FILES )attribute (identifier_directory) identifier_directory (identifier_session) identifier_session (keyword_argument (identifier_spatial) identifier_spatial (identifier_spatial) identifier_spatial )keyword_argument (keyword_argument (identifier_spatialReferenceID) identifier_spatialReferenceID (identifier_spatialReferenceID) identifier_spatialReferenceID )keyword_argument (keyword_argument (identifier_replaceParamFile) identifier_replaceParamFile (identifier_replaceParamFile) identifier_replaceParamFile )keyword_argument )argument_list )call )expression_statement (expression_statement (call (attribute (identifier_self) identifier_self (identifier__readXputMaps) identifier__readXputMaps )attribute (argument_list (attribute (identifier_self) identifier_self (identifier_INPUT_MAPS) identifier_INPUT_MAPS )attribute (identifier_directory) identifier_directory (identifier_session) identifier_session (keyword_argument (identifier_spatial) identifier_spatial (identifier_spatial) identifier_spatial )keyword_argument (keyword_argument (identifier_spatialReferenceID) identifier_spatialReferenceID (identifier_spatialReferenceID) identifier_spatialReferenceID )keyword_argument (keyword_argument (identifier_replaceParamFile) identifier_replaceParamFile (identifier_replaceParamFile) identifier_replaceParamFile )keyword_argument )argument_list )call )expression_statement (expression_statement (call (attribute (identifier_self) identifier_self (identifier__commit) identifier__commit )attribute (argument_list (identifier_session) identifier_session (attribute (identifier_self) identifier_self (identifier_COMMIT_ERROR_MESSAGE) identifier_COMMIT_ERROR_MESSAGE )attribute )argument_list )call )expression_statement )block )with_statement )block )function_definition )module
Read only input files for a GSSHA project into the database. Use this method to read a project when only pre-processing tasks need to be performed. Args: directory (str): Directory containing all GSSHA model files. This method assumes that all files are located in the same directory. projectFileName (str): Name of the project file for the GSSHA model which will be read (e.g.: 'example.prj'). session (:mod:`sqlalchemy.orm.session.Session`): SQLAlchemy session object bound to PostGIS enabled database spatial (bool, optional): If True, spatially enabled objects will be read in as PostGIS spatial objects. Defaults to False. spatialReferenceID (int, optional): Integer id of spatial reference system for the model. If no id is provided GsshaPy will attempt to automatically lookup the spatial reference ID. If this process fails, default srid will be used (4326 for WGS 84).
(module (function_definition (function_name_del_token) function_name_del_token (parameters (identifier_token) identifier_token )parameters (block (expression_statement (assignment (identifier_token_path) identifier_token_path (call (attribute (attribute (identifier_os) identifier_os (identifier_path) identifier_path )attribute (identifier_join) identifier_join )attribute (argument_list (subscript (identifier___opts__) identifier___opts__ (string_'token_dir') string_'token_dir' )subscript (identifier_token) identifier_token )argument_list )call )assignment )expression_statement (if_statement (call (attribute (attribute (identifier_os) identifier_os (identifier_path) identifier_path )attribute (identifier_exists) identifier_exists )attribute (argument_list (identifier_token_path) identifier_token_path )argument_list )call (block (return_statement (comparison_operator (call (attribute (identifier_os) identifier_os (identifier_remove) identifier_remove )attribute (argument_list (identifier_token_path) identifier_token_path )argument_list )call (None) None )comparison_operator )return_statement )block )if_statement (return_statement (False) False )return_statement )block )function_definition )module
Delete an eauth token by name CLI Example: .. code-block:: shell salt-run auth.del_token 6556760736e4077daa601baec2b67c24
(module (function_definition (function_name_list_nodes_full) function_name_list_nodes_full (parameters (default_parameter (identifier_call) identifier_call (None) None )default_parameter )parameters (block (expression_statement (assignment (identifier_response) identifier_response (call (identifier__query) identifier__query (argument_list (string_'grid') string_'grid' (string_'server/list') string_'server/list' )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_ret) identifier_ret (dictionary )dictionary )assignment )expression_statement (for_statement (identifier_item) identifier_item (subscript (identifier_response) identifier_response (string_'list') string_'list' )subscript (block (expression_statement (assignment (identifier_name) identifier_name (subscript (identifier_item) identifier_item (string_'name') string_'name' )subscript )assignment )expression_statement (expression_statement (assignment (subscript (identifier_ret) identifier_ret (identifier_name) identifier_name )subscript (identifier_item) identifier_item )assignment )expression_statement (expression_statement (assignment (subscript (subscript (identifier_ret) identifier_ret (identifier_name) identifier_name )subscript (string_'image_info') string_'image_info' )subscript (subscript (identifier_item) identifier_item (string_'image') string_'image' )subscript )assignment )expression_statement (expression_statement (assignment (subscript (subscript (identifier_ret) identifier_ret (identifier_name) identifier_name )subscript (string_'image') string_'image' )subscript (subscript (subscript (identifier_item) identifier_item (string_'image') string_'image' )subscript (string_'friendlyName') string_'friendlyName' )subscript )assignment )expression_statement (expression_statement (assignment (subscript (subscript (identifier_ret) identifier_ret (identifier_name) identifier_name )subscript (string_'size') string_'size' )subscript (subscript (subscript (identifier_item) identifier_item (string_'ram') string_'ram' )subscript (string_'name') string_'name' )subscript )assignment )expression_statement (expression_statement (assignment (subscript (subscript (identifier_ret) identifier_ret (identifier_name) identifier_name )subscript (string_'public_ips') string_'public_ips' )subscript (list (subscript (subscript (identifier_item) identifier_item (string_'ip') string_'ip' )subscript (string_'ip') string_'ip' )subscript )list )assignment )expression_statement (expression_statement (assignment (subscript (subscript (identifier_ret) identifier_ret (identifier_name) identifier_name )subscript (string_'private_ips') string_'private_ips' )subscript (list )list )assignment )expression_statement (expression_statement (assignment (subscript (subscript (identifier_ret) identifier_ret (identifier_name) identifier_name )subscript (string_'state_info') string_'state_info' )subscript (subscript (identifier_item) identifier_item (string_'state') string_'state' )subscript )assignment )expression_statement (if_statement (comparison_operator (string_'active') string_'active' (subscript (subscript (identifier_item) identifier_item (string_'state') string_'state' )subscript (string_'description') string_'description' )subscript )comparison_operator (block (expression_statement (assignment (subscript (subscript (identifier_ret) identifier_ret (identifier_name) identifier_name )subscript (string_'state') string_'state' )subscript (string_'RUNNING') string_'RUNNING' )assignment )expression_statement )block )if_statement )block )for_statement (return_statement (identifier_ret) identifier_ret )return_statement )block )function_definition )module
List nodes, with all available information CLI Example: .. code-block:: bash salt-cloud -F
(module (function_definition (function_name_configure_host_cache) function_name_configure_host_cache (parameters (identifier_enabled) identifier_enabled (default_parameter (identifier_datastore) identifier_datastore (None) None )default_parameter (default_parameter (identifier_swap_size_MiB) identifier_swap_size_MiB (None) None )default_parameter (default_parameter (identifier_service_instance) identifier_service_instance (None) None )default_parameter )parameters (block (expression_statement (call (attribute (identifier_log) identifier_log (identifier_debug) identifier_debug )attribute (argument_list (string_'Validating host cache input') string_'Validating host cache input' )argument_list )call )expression_statement (expression_statement (assignment (identifier_schema) identifier_schema (call (attribute (identifier_SimpleHostCacheSchema) identifier_SimpleHostCacheSchema (identifier_serialize) identifier_serialize )attribute (argument_list )argument_list )call )assignment )expression_statement (try_statement (block (expression_statement (call (attribute (identifier_jsonschema) identifier_jsonschema (identifier_validate) identifier_validate )attribute (argument_list (dictionary (pair (string_'enabled') string_'enabled' (identifier_enabled) identifier_enabled )pair (pair (string_'datastore_name') string_'datastore_name' (identifier_datastore) identifier_datastore )pair (pair (string_'swap_size_MiB') string_'swap_size_MiB' (identifier_swap_size_MiB) identifier_swap_size_MiB )pair )dictionary (identifier_schema) identifier_schema )argument_list )call )expression_statement )block (except_clause (as_pattern (attribute (attribute (identifier_jsonschema) identifier_jsonschema (identifier_exceptions) identifier_exceptions )attribute (identifier_ValidationError) identifier_ValidationError )attribute (as_pattern_target (identifier_exc) identifier_exc )as_pattern_target )as_pattern (block (raise_statement (call (identifier_ArgumentValueError) identifier_ArgumentValueError (argument_list (identifier_exc) identifier_exc )argument_list )call )raise_statement )block )except_clause )try_statement (if_statement (not_operator (identifier_enabled) identifier_enabled )not_operator (block (raise_statement (call (identifier_ArgumentValueError) identifier_ArgumentValueError (argument_list (string_'Disabling the host cache is not supported') string_'Disabling the host cache is not supported' )argument_list )call )raise_statement )block )if_statement (expression_statement (assignment (identifier_ret_dict) identifier_ret_dict (dictionary (pair (string_'enabled') string_'enabled' (False) False )pair )dictionary )assignment )expression_statement (expression_statement (assignment (identifier_host_ref) identifier_host_ref (call (identifier__get_proxy_target) identifier__get_proxy_target (argument_list (identifier_service_instance) identifier_service_instance )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_hostname) identifier_hostname (subscript (call (subscript (identifier___proxy__) identifier___proxy__ (string_'esxi.get_details') string_'esxi.get_details' )subscript (argument_list )argument_list )call (string_'esxi_host') string_'esxi_host' )subscript )assignment )expression_statement (if_statement (identifier_datastore) identifier_datastore (block (expression_statement (assignment (identifier_ds_refs) identifier_ds_refs (call (attribute (attribute (attribute (identifier_salt) identifier_salt (identifier_utils) identifier_utils )attribute (identifier_vmware) identifier_vmware )attribute (identifier_get_datastores) identifier_get_datastores )attribute (argument_list (identifier_service_instance) identifier_service_instance (identifier_host_ref) identifier_host_ref (keyword_argument (identifier_datastore_names) identifier_datastore_names (list (identifier_datastore) identifier_datastore )list )keyword_argument )argument_list )call )assignment )expression_statement (if_statement (not_operator (identifier_ds_refs) identifier_ds_refs )not_operator (block (raise_statement (call (identifier_VMwareObjectRetrievalError) identifier_VMwareObjectRetrievalError (argument_list (call (attribute (concatenated_string (string_'Datastore \'{0}\' was not found on host ') string_'Datastore \'{0}\' was not found on host ' (string_'\'{1}\'') string_'\'{1}\'' )concatenated_string (identifier_format) identifier_format )attribute (argument_list (identifier_datastore) identifier_datastore (identifier_hostname) identifier_hostname )argument_list )call )argument_list )call )raise_statement )block )if_statement (expression_statement (assignment (identifier_ds_ref) identifier_ds_ref (subscript (identifier_ds_refs) identifier_ds_refs (integer_0) integer_0 )subscript )assignment )expression_statement )block )if_statement (expression_statement (call (attribute (attribute (attribute (identifier_salt) identifier_salt (identifier_utils) identifier_utils )attribute (identifier_vmware) identifier_vmware )attribute (identifier_configure_host_cache) identifier_configure_host_cache )attribute (argument_list (identifier_host_ref) identifier_host_ref (identifier_ds_ref) identifier_ds_ref (identifier_swap_size_MiB) identifier_swap_size_MiB )argument_list )call )expression_statement (return_statement (True) True )return_statement )block )function_definition )module
Configures the host cache on the selected host. enabled Boolean flag specifying whether the host cache is enabled. datastore Name of the datastore that contains the host cache. Must be set if enabled is ``true``. swap_size_MiB Swap size in Mibibytes. Needs to be set if enabled is ``true``. Must be smaller than the datastore size. service_instance Service instance (vim.ServiceInstance) of the vCenter/ESXi host. Default is None. .. code-block:: bash salt '*' vsphere.configure_host_cache enabled=False salt '*' vsphere.configure_host_cache enabled=True datastore=ds1 swap_size_MiB=1024
(module (function_definition (function_name_log_coroutine) function_name_log_coroutine (parameters (identifier_self) identifier_self (identifier_cor) identifier_cor (list_splat_pattern (identifier_args) identifier_args )list_splat_pattern (dictionary_splat_pattern (identifier_kwargs) identifier_kwargs )dictionary_splat_pattern )parameters (block (if_statement (attribute (identifier_self) identifier_self (identifier_stopping) identifier_stopping )attribute (block (raise_statement (call (identifier_LoopStoppingError) identifier_LoopStoppingError (argument_list (binary_operator (string_"Could not launch coroutine because loop is shutting down: %s") string_"Could not launch coroutine because loop is shutting down: %s" (identifier_cor) identifier_cor )binary_operator )argument_list )call )raise_statement )block )if_statement (expression_statement (call (attribute (identifier_self) identifier_self (identifier_start) identifier_start )attribute (argument_list )argument_list )call )expression_statement (expression_statement (assignment (identifier_cor) identifier_cor (call (identifier__instaniate_coroutine) identifier__instaniate_coroutine (argument_list (identifier_cor) identifier_cor (identifier_args) identifier_args (identifier_kwargs) identifier_kwargs )argument_list )call )assignment )expression_statement (function_definition (function_name__run_and_log) function_name__run_and_log (parameters )parameters (block (expression_statement (assignment (identifier_task) identifier_task (call (attribute (attribute (identifier_self) identifier_self (identifier_loop) identifier_loop )attribute (identifier_create_task) identifier_create_task )attribute (argument_list (identifier_cor) identifier_cor )argument_list )call )assignment )expression_statement (expression_statement (call (attribute (identifier_task) identifier_task (identifier_add_done_callback) identifier_add_done_callback )attribute (argument_list (lambda (lambda_parameters (identifier_x) identifier_x )lambda_parameters (call (identifier__log_future_exception) identifier__log_future_exception (argument_list (identifier_x) identifier_x (attribute (identifier_self) identifier_self (identifier__logger) identifier__logger )attribute )argument_list )call )lambda )argument_list )call )expression_statement )block )function_definition (if_statement (call (attribute (identifier_self) identifier_self (identifier_inside_loop) identifier_inside_loop )attribute (argument_list )argument_list )call (block (expression_statement (call (identifier__run_and_log) identifier__run_and_log (argument_list )argument_list )call )expression_statement )block (else_clause (block (expression_statement (call (attribute (attribute (identifier_self) identifier_self (identifier_loop) identifier_loop )attribute (identifier_call_soon_threadsafe) identifier_call_soon_threadsafe )attribute (argument_list (identifier__run_and_log) identifier__run_and_log )argument_list )call )expression_statement )block )else_clause )if_statement )block )function_definition )module
Run a coroutine logging any exception raised. This routine will not block until the coroutine is finished nor will it return any result. It will just log if any exception is raised by the coroutine during operation. It is safe to call from both inside and outside the event loop. There is no guarantee on how soon the coroutine will be scheduled. Args: cor (coroutine): The coroutine that we wish to run in the background and wait until it finishes.
(module (function_definition (function_name_abs) function_name_abs (parameters (identifier_cls) identifier_cls (typed_parameter (identifier_x) identifier_x (type (string_'TensorFluent') string_'TensorFluent' )type )typed_parameter )parameters (type (string_'TensorFluent') string_'TensorFluent' )type (block (return_statement (call (attribute (identifier_cls) identifier_cls (identifier__unary_op) identifier__unary_op )attribute (argument_list (identifier_x) identifier_x (attribute (identifier_tf) identifier_tf (identifier_abs) identifier_abs )attribute (attribute (identifier_tf) identifier_tf (identifier_float32) identifier_float32 )attribute )argument_list )call )return_statement )block )function_definition )module
Returns a TensorFluent for the abs function. Args: x: The input fluent. Returns: A TensorFluent wrapping the abs function.
(module (function_definition (function_name_save_hex) function_name_save_hex (parameters (identifier_hex_file) identifier_hex_file (identifier_path) identifier_path )parameters (block (if_statement (not_operator (identifier_hex_file) identifier_hex_file )not_operator (block (raise_statement (call (identifier_ValueError) identifier_ValueError (argument_list (string_'Cannot flash an empty .hex file.') string_'Cannot flash an empty .hex file.' )argument_list )call )raise_statement )block )if_statement (if_statement (not_operator (call (attribute (identifier_path) identifier_path (identifier_endswith) identifier_endswith )attribute (argument_list (string_'.hex') string_'.hex' )argument_list )call )not_operator (block (raise_statement (call (identifier_ValueError) identifier_ValueError (argument_list (string_'The path to flash must be for a .hex file.') string_'The path to flash must be for a .hex file.' )argument_list )call )raise_statement )block )if_statement (with_statement (with_clause (with_item (as_pattern (call (identifier_open) identifier_open (argument_list (identifier_path) identifier_path (string_'wb') string_'wb' )argument_list )call (as_pattern_target (identifier_output) identifier_output )as_pattern_target )as_pattern )with_item )with_clause (block (expression_statement (call (attribute (identifier_output) identifier_output (identifier_write) identifier_write )attribute (argument_list (call (attribute (identifier_hex_file) identifier_hex_file (identifier_encode) identifier_encode )attribute (argument_list (string_'ascii') string_'ascii' )argument_list )call )argument_list )call )expression_statement )block )with_statement )block )function_definition )module
Given a string representation of a hex file, this function copies it to the specified path thus causing the device mounted at that point to be flashed. If the hex_file is empty it will raise a ValueError. If the filename at the end of the path does not end in '.hex' it will raise a ValueError.
(module (function_definition (function_name_partial_path_match) function_name_partial_path_match (parameters (identifier_path1) identifier_path1 (identifier_path2) identifier_path2 (default_parameter (identifier_kwarg_re) identifier_kwarg_re (string_r'\{.*\}') string_r'\{.*\}' )default_parameter )parameters (block (expression_statement (assignment (identifier_split_p1) identifier_split_p1 (call (attribute (identifier_path1) identifier_path1 (identifier_split) identifier_split )attribute (argument_list (string_'/') string_'/' )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_split_p2) identifier_split_p2 (call (attribute (identifier_path2) identifier_path2 (identifier_split) identifier_split )attribute (argument_list (string_'/') string_'/' )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_pat) identifier_pat (call (attribute (identifier_re) identifier_re (identifier_compile) identifier_compile )attribute (argument_list (identifier_kwarg_re) identifier_kwarg_re )argument_list )call )assignment )expression_statement (if_statement (comparison_operator (call (identifier_len) identifier_len (argument_list (identifier_split_p1) identifier_split_p1 )argument_list )call (call (identifier_len) identifier_len (argument_list (identifier_split_p2) identifier_split_p2 )argument_list )call )comparison_operator (block (return_statement (False) False )return_statement )block )if_statement (for_statement (pattern_list (identifier_partial_p1) identifier_partial_p1 (identifier_partial_p2) identifier_partial_p2 )pattern_list (call (identifier_zip) identifier_zip (argument_list (identifier_split_p1) identifier_split_p1 (identifier_split_p2) identifier_split_p2 )argument_list )call (block (if_statement (boolean_operator (call (attribute (identifier_pat) identifier_pat (identifier_match) identifier_match )attribute (argument_list (identifier_partial_p1) identifier_partial_p1 )argument_list )call (call (attribute (identifier_pat) identifier_pat (identifier_match) identifier_match )attribute (argument_list (identifier_partial_p2) identifier_partial_p2 )argument_list )call )boolean_operator (block (continue_statement )continue_statement )block )if_statement (if_statement (not_operator (comparison_operator (identifier_partial_p1) identifier_partial_p1 (identifier_partial_p2) identifier_partial_p2 )comparison_operator )not_operator (block (return_statement (False) False )return_statement )block )if_statement )block )for_statement (return_statement (True) True )return_statement )block )function_definition )module
Validates if path1 and path2 matches, ignoring any kwargs in the string. We need this to ensure we can match Swagger patterns like: /foo/{id} against the observed pyramid path /foo/1 :param path1: path of a url :type path1: string :param path2: path of a url :type path2: string :param kwarg_re: regex pattern to identify kwargs :type kwarg_re: regex string :returns: boolean
(module (function_definition (function_name__group_by_equal_size) function_name__group_by_equal_size (parameters (identifier_obj_list) identifier_obj_list (identifier_tot_groups) identifier_tot_groups (default_parameter (identifier_threshold) identifier_threshold (call (identifier_pow) identifier_pow (argument_list (integer_2) integer_2 (integer_32) integer_32 )argument_list )call )default_parameter )parameters (block (expression_statement (assignment (identifier_sorted_obj_list) identifier_sorted_obj_list (call (identifier_sorted) identifier_sorted (argument_list (list_comprehension (tuple (subscript (identifier_obj) identifier_obj (string_'size') string_'size' )subscript (identifier_obj) identifier_obj )tuple (for_in_clause (identifier_obj) identifier_obj (identifier_obj_list) identifier_obj_list )for_in_clause )list_comprehension (keyword_argument (identifier_reverse) identifier_reverse (True) True )keyword_argument )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_groups) identifier_groups (list_comprehension (tuple (call (attribute (identifier_random) identifier_random (identifier_random) identifier_random )attribute (argument_list )argument_list )call (list )list )tuple (for_in_clause (identifier__) identifier__ (call (identifier_range) identifier_range (argument_list (identifier_tot_groups) identifier_tot_groups )argument_list )call )for_in_clause )list_comprehension )assignment )expression_statement (if_statement (comparison_operator (identifier_tot_groups) identifier_tot_groups (integer_1) integer_1 )comparison_operator (block (expression_statement (assignment (identifier_groups) identifier_groups (call (identifier__group_by_size_greedy) identifier__group_by_size_greedy (argument_list (identifier_obj_list) identifier_obj_list (identifier_tot_groups) identifier_tot_groups )argument_list )call )assignment )expression_statement (return_statement (identifier_groups) identifier_groups )return_statement )block )if_statement (expression_statement (call (attribute (identifier_heapq) identifier_heapq (identifier_heapify) identifier_heapify )attribute (argument_list (identifier_groups) identifier_groups )argument_list )call )expression_statement (for_statement (identifier_obj) identifier_obj (identifier_sorted_obj_list) identifier_sorted_obj_list (block (if_statement (comparison_operator (subscript (identifier_obj) identifier_obj (integer_0) integer_0 )subscript (identifier_threshold) identifier_threshold )comparison_operator (block (expression_statement (call (attribute (identifier_heapq) identifier_heapq (identifier_heappush) identifier_heappush )attribute (argument_list (identifier_groups) identifier_groups (tuple (subscript (identifier_obj) identifier_obj (integer_0) integer_0 )subscript (list (subscript (identifier_obj) identifier_obj (integer_1) integer_1 )subscript )list )tuple )argument_list )call )expression_statement )block (else_clause (block (expression_statement (assignment (pattern_list (identifier_size) identifier_size (identifier_files) identifier_files )pattern_list (call (attribute (identifier_heapq) identifier_heapq (identifier_heappop) identifier_heappop )attribute (argument_list (identifier_groups) identifier_groups )argument_list )call )assignment )expression_statement (expression_statement (augmented_assignment (identifier_size) identifier_size (subscript (identifier_obj) identifier_obj (integer_0) integer_0 )subscript )augmented_assignment )expression_statement (expression_statement (call (attribute (identifier_files) identifier_files (identifier_append) identifier_append )attribute (argument_list (subscript (identifier_obj) identifier_obj (integer_1) integer_1 )subscript )argument_list )call )expression_statement (expression_statement (call (attribute (identifier_heapq) identifier_heapq (identifier_heappush) identifier_heappush )attribute (argument_list (identifier_groups) identifier_groups (tuple (identifier_size) identifier_size (identifier_files) identifier_files )tuple )argument_list )call )expression_statement )block )else_clause )if_statement )block )for_statement (expression_statement (assignment (identifier_groups) identifier_groups (list_comprehension (subscript (identifier_group) identifier_group (integer_1) integer_1 )subscript (for_in_clause (identifier_group) identifier_group (identifier_groups) identifier_groups )for_in_clause )list_comprehension )assignment )expression_statement (return_statement (identifier_groups) identifier_groups )return_statement )block )function_definition )module
Partition a list of objects evenly and by file size Files are placed according to largest file in the smallest bucket. If the file is larger than the given threshold, then it is placed in a new bucket by itself. :param obj_list: a list of dict-like objects with a 'size' property :param tot_groups: number of partitions to split the data :param threshold: the maximum size of each bucket :return: a list of lists, one for each partition
(module (function_definition (function_name_notUnique) function_name_notUnique (parameters (identifier_iterable) identifier_iterable (default_parameter (identifier_reportMax) identifier_reportMax (identifier_INF) identifier_INF )default_parameter )parameters (block (expression_statement (assignment (identifier_hash) identifier_hash (dictionary )dictionary )assignment )expression_statement (expression_statement (assignment (identifier_n) identifier_n (integer_0) integer_0 )assignment )expression_statement (if_statement (comparison_operator (identifier_reportMax) identifier_reportMax (integer_1) integer_1 )comparison_operator (block (raise_statement (call (identifier_ValueError) identifier_ValueError (argument_list (binary_operator (string_"`reportMax` must be >= 1 and is %r") string_"`reportMax` must be >= 1 and is %r" (identifier_reportMax) identifier_reportMax )binary_operator )argument_list )call )raise_statement )block )if_statement (for_statement (identifier_item) identifier_item (identifier_iterable) identifier_iterable (block (expression_statement (assignment (identifier_count) identifier_count (assignment (subscript (identifier_hash) identifier_hash (identifier_item) identifier_item )subscript (binary_operator (call (attribute (identifier_hash) identifier_hash (identifier_get) identifier_get )attribute (argument_list (identifier_item) identifier_item (integer_0) integer_0 )argument_list )call (integer_1) integer_1 )binary_operator )assignment )assignment )expression_statement (if_statement (comparison_operator (identifier_count) identifier_count (integer_1) integer_1 )comparison_operator (block (expression_statement (yield (identifier_item) identifier_item )yield )expression_statement (expression_statement (augmented_assignment (identifier_n) identifier_n (integer_1) integer_1 )augmented_assignment )expression_statement (if_statement (comparison_operator (identifier_n) identifier_n (identifier_reportMax) identifier_reportMax )comparison_operator (block (return_statement )return_statement )block )if_statement )block )if_statement )block )for_statement )block )function_definition )module
Returns the elements in `iterable` that aren't unique; stops after it found `reportMax` non-unique elements. Examples: >>> list(notUnique([1,1,2,2,3,3])) [1, 2, 3] >>> list(notUnique([1,1,2,2,3,3], 1)) [1]
(module (function_definition (function_name_locate) function_name_locate (parameters (identifier_self) identifier_self (identifier_path) identifier_path )parameters (block (return_statement (call (identifier_Zconfig) identifier_Zconfig (argument_list (call (attribute (identifier_lib) identifier_lib (identifier_zconfig_locate) identifier_zconfig_locate )attribute (argument_list (attribute (identifier_self) identifier_self (identifier__as_parameter_) identifier__as_parameter_ )attribute (identifier_path) identifier_path )argument_list )call (False) False )argument_list )call )return_statement )block )function_definition )module
Find a config item along a path; leading slash is optional and ignored.
(module (function_definition (function_name_wait) function_name_wait (parameters (identifier_objects) identifier_objects (default_parameter (identifier_count) identifier_count (None) None )default_parameter (default_parameter (identifier_timeout) identifier_timeout (None) None )default_parameter )parameters (block (for_statement (identifier_obj) identifier_obj (identifier_objects) identifier_objects (block (if_statement (not_operator (call (identifier_hasattr) identifier_hasattr (argument_list (identifier_obj) identifier_obj (string_'add_done_callback') string_'add_done_callback' )argument_list )call )not_operator (block (raise_statement (call (identifier_TypeError) identifier_TypeError (argument_list (string_'Expecting sequence of waitable objects') string_'Expecting sequence of waitable objects' )argument_list )call )raise_statement )block )if_statement )block )for_statement (if_statement (comparison_operator (identifier_count) identifier_count (None) None )comparison_operator (block (expression_statement (assignment (identifier_count) identifier_count (call (identifier_len) identifier_len (argument_list (identifier_objects) identifier_objects )argument_list )call )assignment )expression_statement )block )if_statement (if_statement (boolean_operator (comparison_operator (identifier_count) identifier_count (integer_0) integer_0 )comparison_operator (comparison_operator (identifier_count) identifier_count (call (identifier_len) identifier_len (argument_list (identifier_objects) identifier_objects )argument_list )call )comparison_operator )boolean_operator (block (raise_statement (call (identifier_ValueError) identifier_ValueError (argument_list (string_'count must be between 0 and len(objects)') string_'count must be between 0 and len(objects)' )argument_list )call )raise_statement )block )if_statement (if_statement (comparison_operator (identifier_count) identifier_count (integer_0) integer_0 )comparison_operator (block (return_statement (expression_list (list )list (identifier_objects) identifier_objects )expression_list )return_statement )block )if_statement (expression_statement (assignment (identifier_pending) identifier_pending (call (identifier_list) identifier_list (argument_list (identifier_objects) identifier_objects )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_done) identifier_done (list )list )assignment )expression_statement (try_statement (block (for_statement (identifier_obj) identifier_obj (call (identifier__wait) identifier__wait (argument_list (identifier_pending) identifier_pending (identifier_timeout) identifier_timeout )argument_list )call (block (expression_statement (call (attribute (identifier_done) identifier_done (identifier_append) identifier_append )attribute (argument_list (identifier_obj) identifier_obj )argument_list )call )expression_statement (if_statement (comparison_operator (call (identifier_len) identifier_len (argument_list (identifier_done) identifier_done )argument_list )call (identifier_count) identifier_count )comparison_operator (block (break_statement )break_statement )block )if_statement )block )for_statement )block (except_clause (identifier_Timeout) identifier_Timeout (block (pass_statement )pass_statement )block )except_clause )try_statement (return_statement (expression_list (identifier_done) identifier_done (call (identifier_list) identifier_list (argument_list (call (identifier_filter) identifier_filter (argument_list (identifier_bool) identifier_bool (identifier_pending) identifier_pending )argument_list )call )argument_list )call )expression_list )return_statement )block )function_definition )module
Wait for one or more waitable objects. This method waits until *count* elements from the sequence of waitable objects *objects* have become ready. If *count* is ``None`` (the default), then wait for all objects to become ready. What "ready" is means depends on the object type. A waitable object is a objects that implements the ``add_done_callback()`` and ``remove_done_callback`` methods. This currently includes: * :class:`~gruvi.Event` - an event is ready when its internal flag is set. * :class:`~gruvi.Future` - a future is ready when its result is set. * :class:`~gruvi.Fiber` - a fiber is ready when has terminated. * :class:`~gruvi.Process` - a process is ready when the child has exited.
(module (function_definition (function_name_boolean) function_name_boolean (parameters (identifier_flag) identifier_flag )parameters (block (expression_statement (assignment (identifier_s) identifier_s (call (attribute (identifier_flag) identifier_flag (identifier_lower) identifier_lower )attribute (argument_list )argument_list )call )assignment )expression_statement (if_statement (comparison_operator (identifier_s) identifier_s (tuple (string_'1') string_'1' (string_'yes') string_'yes' (string_'true') string_'true' )tuple )comparison_operator (block (return_statement (True) True )return_statement )block (elif_clause (comparison_operator (identifier_s) identifier_s (tuple (string_'0') string_'0' (string_'no') string_'no' (string_'false') string_'false' )tuple )comparison_operator (block (return_statement (False) False )return_statement )block )elif_clause )if_statement (raise_statement (call (identifier_ValueError) identifier_ValueError (argument_list (binary_operator (string_'Unknown flag %r') string_'Unknown flag %r' (identifier_s) identifier_s )binary_operator )argument_list )call )raise_statement )block )function_definition )module
Convert string in boolean
(module (function_definition (function_name_GetEntries) function_name_GetEntries (parameters (identifier_self) identifier_self (identifier_parser_mediator) identifier_parser_mediator (default_parameter (identifier_top_level) identifier_top_level (None) None )default_parameter (dictionary_splat_pattern (identifier_unused_kwargs) identifier_unused_kwargs )dictionary_splat_pattern )parameters (block (for_statement (identifier_entry) identifier_entry (identifier_top_level) identifier_top_level (block (expression_statement (assignment (identifier_datetime_value) identifier_datetime_value (call (attribute (identifier_entry) identifier_entry (identifier_get) identifier_get )attribute (argument_list (string_'date') string_'date' (None) None )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_package_identifiers) identifier_package_identifiers (call (attribute (identifier_entry) identifier_entry (identifier_get) identifier_get )attribute (argument_list (string_'packageIdentifiers') string_'packageIdentifiers' (list )list )argument_list )call )assignment )expression_statement (if_statement (boolean_operator (not_operator (identifier_datetime_value) identifier_datetime_value )not_operator (not_operator (identifier_package_identifiers) identifier_package_identifiers )not_operator )boolean_operator (block (continue_statement )continue_statement )block )if_statement (expression_statement (assignment (identifier_display_name) identifier_display_name (call (attribute (identifier_entry) identifier_entry (identifier_get) identifier_get )attribute (argument_list (string_'displayName') string_'displayName' (string_'<UNKNOWN>') string_'<UNKNOWN>' )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_display_version) identifier_display_version (call (attribute (identifier_entry) identifier_entry (identifier_get) identifier_get )attribute (argument_list (string_'displayVersion') string_'displayVersion' (string_'<DISPLAY_VERSION>') string_'<DISPLAY_VERSION>' )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_process_name) identifier_process_name (call (attribute (identifier_entry) identifier_entry (identifier_get) identifier_get )attribute (argument_list (string_'processName') string_'processName' (string_'<PROCESS_NAME>') string_'<PROCESS_NAME>' )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_package_identifiers) identifier_package_identifiers (call (attribute (string_', ') string_', ' (identifier_join) identifier_join )attribute (argument_list (identifier_package_identifiers) identifier_package_identifiers )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_event_data) identifier_event_data (call (attribute (identifier_plist_event) identifier_plist_event (identifier_PlistTimeEventData) identifier_PlistTimeEventData )attribute (argument_list )argument_list )call )assignment )expression_statement (expression_statement (assignment (attribute (identifier_event_data) identifier_event_data (identifier_desc) identifier_desc )attribute (call (attribute (parenthesized_expression (concatenated_string (string_'Installation of [{0:s} {1:s}] using [{2:s}]. Packages: ') string_'Installation of [{0:s} {1:s}] using [{2:s}]. Packages: ' (string_'{3:s}.') string_'{3:s}.' )concatenated_string )parenthesized_expression (identifier_format) identifier_format )attribute (argument_list (identifier_display_name) identifier_display_name (identifier_display_version) identifier_display_version (identifier_process_name) identifier_process_name (identifier_package_identifiers) identifier_package_identifiers )argument_list )call )assignment )expression_statement (expression_statement (assignment (attribute (identifier_event_data) identifier_event_data (identifier_key) identifier_key )attribute (string_'') string_'' )assignment )expression_statement (expression_statement (assignment (attribute (identifier_event_data) identifier_event_data (identifier_root) identifier_root )attribute (string_'/item') string_'/item' )assignment )expression_statement (expression_statement (assignment (identifier_event) identifier_event (call (attribute (identifier_time_events) identifier_time_events (identifier_PythonDatetimeEvent) identifier_PythonDatetimeEvent )attribute (argument_list (identifier_datetime_value) identifier_datetime_value (attribute (identifier_definitions) identifier_definitions (identifier_TIME_DESCRIPTION_WRITTEN) identifier_TIME_DESCRIPTION_WRITTEN )attribute )argument_list )call )assignment )expression_statement (expression_statement (call (attribute (identifier_parser_mediator) identifier_parser_mediator (identifier_ProduceEventWithEventData) identifier_ProduceEventWithEventData )attribute (argument_list (identifier_event) identifier_event (identifier_event_data) identifier_event_data )argument_list )call )expression_statement )block )for_statement )block )function_definition )module
Extracts relevant install history entries. Args: parser_mediator (ParserMediator): mediates interactions between parsers and other components, such as storage and dfvfs. top_level (dict[str, object]): plist top-level key.
(module (function_definition (function_name_start) function_name_start (parameters (identifier_self) identifier_self )parameters (block (while_statement (True) True (block (expression_statement (call (attribute (identifier_self) identifier_self (identifier_thread_debug) identifier_thread_debug )attribute (argument_list (string_"Interval starting") string_"Interval starting" )argument_list )call )expression_statement (for_statement (identifier_thr) identifier_thr (call (attribute (identifier_threading) identifier_threading (identifier_enumerate) identifier_enumerate )attribute (argument_list )argument_list )call (block (expression_statement (call (attribute (identifier_self) identifier_self (identifier_thread_debug) identifier_thread_debug )attribute (argument_list (binary_operator (string_" ") string_" " (call (identifier_str) identifier_str (argument_list (identifier_thr) identifier_thr )argument_list )call )binary_operator )argument_list )call )expression_statement )block )for_statement (expression_statement (call (attribute (identifier_self) identifier_self (identifier_feed_monitors) identifier_feed_monitors )attribute (argument_list )argument_list )call )expression_statement (expression_statement (assignment (identifier_start) identifier_start (call (attribute (identifier_time) identifier_time (identifier_time) identifier_time )attribute (argument_list )argument_list )call )assignment )expression_statement (expression_statement (call (attribute (attribute (identifier_self) identifier_self (identifier_workers_queue) identifier_workers_queue )attribute (identifier_join) identifier_join )attribute (argument_list )argument_list )call )expression_statement (expression_statement (assignment (identifier_end) identifier_end (call (attribute (identifier_time) identifier_time (identifier_time) identifier_time )attribute (argument_list )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_diff) identifier_diff (binary_operator (subscript (subscript (attribute (identifier_self) identifier_self (identifier_config) identifier_config )attribute (string_'interval') string_'interval' )subscript (string_'test') string_'test' )subscript (parenthesized_expression (binary_operator (identifier_end) identifier_end (identifier_start) identifier_start )binary_operator )parenthesized_expression )binary_operator )assignment )expression_statement (if_statement (comparison_operator (identifier_diff) identifier_diff (integer_0) integer_0 )comparison_operator (block (expression_statement (assignment (attribute (attribute (identifier_self) identifier_self (identifier_stats) identifier_stats )attribute (identifier_procwin) identifier_procwin )attribute (unary_operator (identifier_diff) identifier_diff )unary_operator )assignment )expression_statement (expression_statement (call (attribute (identifier_self) identifier_self (identifier_thread_debug) identifier_thread_debug )attribute (argument_list (call (attribute (string_"Cannot keep up with tests! {} seconds late") string_"Cannot keep up with tests! {} seconds late" (identifier_format) identifier_format )attribute (argument_list (call (identifier_abs) identifier_abs (argument_list (identifier_diff) identifier_diff )argument_list )call )argument_list )call )argument_list )call )expression_statement )block (else_clause (block (expression_statement (call (attribute (identifier_self) identifier_self (identifier_thread_debug) identifier_thread_debug )attribute (argument_list (call (attribute (string_"waiting {} seconds...") string_"waiting {} seconds..." (identifier_format) identifier_format )attribute (argument_list (identifier_diff) identifier_diff )argument_list )call )argument_list )call )expression_statement (expression_statement (call (attribute (identifier_time) identifier_time (identifier_sleep) identifier_sleep )attribute (argument_list (identifier_diff) identifier_diff )argument_list )call )expression_statement )block )else_clause )if_statement )block )while_statement )block )function_definition )module
The main loop, run forever.
(module (function_definition (function_name_process_post_media_attachment) function_name_process_post_media_attachment (parameters (identifier_self) identifier_self (identifier_bulk_mode) identifier_bulk_mode (identifier_api_media_attachment) identifier_api_media_attachment )parameters (block (expression_statement (assignment (identifier_attachment) identifier_attachment (None) None )assignment )expression_statement (if_statement (identifier_bulk_mode) identifier_bulk_mode (block (expression_statement (assignment (identifier_attachment) identifier_attachment (call (attribute (subscript (attribute (identifier_self) identifier_self (identifier_ref_data_map) identifier_ref_data_map )attribute (string_"media") string_"media" )subscript (identifier_get) identifier_get )attribute (argument_list (subscript (identifier_api_media_attachment) identifier_api_media_attachment (string_"ID") string_"ID" )subscript )argument_list )call )assignment )expression_statement )block )if_statement (if_statement (not_operator (identifier_attachment) identifier_attachment )not_operator (block (expression_statement (assignment (pattern_list (identifier_attachment) identifier_attachment (identifier_created) identifier_created )pattern_list (call (attribute (identifier_self) identifier_self (identifier_get_or_create_media) identifier_get_or_create_media )attribute (argument_list (identifier_api_media_attachment) identifier_api_media_attachment )argument_list )call )assignment )expression_statement (if_statement (boolean_operator (identifier_attachment) identifier_attachment (not_operator (identifier_created) identifier_created )not_operator )boolean_operator (block (expression_statement (call (attribute (identifier_self) identifier_self (identifier_update_existing_media) identifier_update_existing_media )attribute (argument_list (identifier_attachment) identifier_attachment (identifier_api_media_attachment) identifier_api_media_attachment )argument_list )call )expression_statement )block )if_statement (if_statement (identifier_attachment) identifier_attachment (block (expression_statement (assignment (subscript (subscript (attribute (identifier_self) identifier_self (identifier_ref_data_map) identifier_ref_data_map )attribute (string_"media") string_"media" )subscript (subscript (identifier_api_media_attachment) identifier_api_media_attachment (string_"ID") string_"ID" )subscript )subscript (identifier_attachment) identifier_attachment )assignment )expression_statement )block )if_statement )block )if_statement (return_statement (identifier_attachment) identifier_attachment )return_statement )block )function_definition )module
Create or update a Media attached to a post. :param bulk_mode: If True, minimize db operations by bulk creating post objects :param api_media_attachment: the API data for the Media :return: the Media attachment object
(module (function_definition (function_name___parse_namespace) function_name___parse_namespace (parameters (identifier_self) identifier_self )parameters (block (if_statement (call (attribute (attribute (identifier_self) identifier_self (identifier_manifest) identifier_manifest )attribute (identifier_has_option) identifier_has_option )attribute (argument_list (string_'config') string_'config' (string_'namespace') string_'namespace' )argument_list )call (block (return_statement (call (attribute (attribute (identifier_self) identifier_self (identifier_manifest) identifier_manifest )attribute (identifier_get) identifier_get )attribute (argument_list (string_'config') string_'config' (string_'namespace') string_'namespace' )argument_list )call )return_statement )block (elif_clause (call (attribute (attribute (identifier_self) identifier_self (identifier_manifest) identifier_manifest )attribute (identifier_has_option) identifier_has_option )attribute (argument_list (string_'config') string_'config' (string_'source') string_'source' )argument_list )call (block (return_statement (subscript (call (attribute (call (attribute (identifier_NAMESPACE_REGEX) identifier_NAMESPACE_REGEX (identifier_search) identifier_search )attribute (argument_list (call (attribute (attribute (identifier_self) identifier_self (identifier_manifest) identifier_manifest )attribute (identifier_get) identifier_get )attribute (argument_list (string_'config') string_'config' (string_'source') string_'source' )argument_list )call )argument_list )call (identifier_groups) identifier_groups )attribute (argument_list )argument_list )call (integer_0) integer_0 )subscript )return_statement )block )elif_clause (else_clause (block (expression_statement (call (attribute (identifier_logger) identifier_logger (identifier_warn) identifier_warn )attribute (argument_list (string_'Could not parse namespace implicitely') string_'Could not parse namespace implicitely' )argument_list )call )expression_statement (return_statement (None) None )return_statement )block )else_clause )if_statement )block )function_definition )module
Parse the namespace from various sources
(module (function_definition (function_name_gen_textfiles_from_filenames) function_name_gen_textfiles_from_filenames (parameters (typed_parameter (identifier_filenames) identifier_filenames (type (generic_type (identifier_Iterable) identifier_Iterable (type_parameter (type (identifier_str) identifier_str )type )type_parameter )generic_type )type )typed_parameter )parameters (type (generic_type (identifier_Generator) identifier_Generator (type_parameter (type (identifier_TextIO) identifier_TextIO )type (type (None) None )type (type (None) None )type )type_parameter )generic_type )type (block (for_statement (identifier_filename) identifier_filename (identifier_filenames) identifier_filenames (block (with_statement (with_clause (with_item (as_pattern (call (identifier_open) identifier_open (argument_list (identifier_filename) identifier_filename )argument_list )call (as_pattern_target (identifier_f) identifier_f )as_pattern_target )as_pattern )with_item )with_clause (block (expression_statement (yield (identifier_f) identifier_f )yield )expression_statement )block )with_statement )block )for_statement )block )function_definition )module
Generates file-like objects from a list of filenames. Args: filenames: iterable of filenames Yields: each file as a :class:`TextIO` object
(module (function_definition (function_name_ystep) function_name_ystep (parameters (identifier_self) identifier_self )parameters (block (expression_statement (assignment (identifier_amidx) identifier_amidx (call (attribute (identifier_self) identifier_self (identifier_index_addmsk) identifier_index_addmsk )attribute (argument_list )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_Yi) identifier_Yi (binary_operator (subscript (attribute (attribute (identifier_self) identifier_self (identifier_cbpdn) identifier_cbpdn )attribute (identifier_AX) identifier_AX )attribute (identifier_amidx) identifier_amidx )subscript (subscript (attribute (attribute (identifier_self) identifier_self (identifier_cbpdn) identifier_cbpdn )attribute (identifier_U) identifier_U )attribute (identifier_amidx) identifier_amidx )subscript )binary_operator )assignment )expression_statement (expression_statement (call (attribute (identifier_self) identifier_self (identifier_inner_ystep) identifier_inner_ystep )attribute (argument_list )argument_list )call )expression_statement (expression_statement (assignment (subscript (identifier_Yi) identifier_Yi (call (attribute (identifier_np) identifier_np (identifier_where) identifier_where )attribute (argument_list (call (attribute (attribute (identifier_self) identifier_self (identifier_W) identifier_W )attribute (identifier_astype) identifier_astype )attribute (argument_list (attribute (identifier_np) identifier_np (identifier_bool) identifier_bool )attribute )argument_list )call )argument_list )call )subscript (float_0.0) float_0.0 )assignment )expression_statement (expression_statement (assignment (subscript (attribute (attribute (identifier_self) identifier_self (identifier_cbpdn) identifier_cbpdn )attribute (identifier_Y) identifier_Y )attribute (identifier_amidx) identifier_amidx )subscript (identifier_Yi) identifier_Yi )assignment )expression_statement )block )function_definition )module
This method is inserted into the inner cbpdn object, replacing its own ystep method, thereby providing a hook for applying the additional steps necessary for the AMS method.
(module (function_definition (function_name__list_getter) function_name__list_getter (parameters (identifier_self) identifier_self )parameters (block (function_definition (function_name_get_child_element_list) function_name_get_child_element_list (parameters (identifier_obj) identifier_obj )parameters (block (return_statement (call (attribute (identifier_obj) identifier_obj (identifier_findall) identifier_findall )attribute (argument_list (call (identifier_qn) identifier_qn (argument_list (attribute (identifier_self) identifier_self (identifier__nsptagname) identifier__nsptagname )attribute )argument_list )call )argument_list )call )return_statement )block )function_definition (expression_statement (assignment (attribute (identifier_get_child_element_list) identifier_get_child_element_list (identifier___doc__) identifier___doc__ )attribute (parenthesized_expression (binary_operator (concatenated_string (string_'A list containing each of the ``<%s>`` child elements, in the o') string_'A list containing each of the ``<%s>`` child elements, in the o' (string_'rder they appear.') string_'rder they appear.' )concatenated_string (attribute (identifier_self) identifier_self (identifier__nsptagname) identifier__nsptagname )attribute )binary_operator )parenthesized_expression )assignment )expression_statement (return_statement (identifier_get_child_element_list) identifier_get_child_element_list )return_statement )block )function_definition )module
Return a function object suitable for the "get" side of a list property descriptor.
(module (function_definition (function_name_local) function_name_local (parameters (identifier_self) identifier_self )parameters (block (assert_statement (comparison_operator (attribute (identifier_self) identifier_self (identifier_name) identifier_name )attribute (attribute (subscript (subscript (identifier_CFG) identifier_CFG (string_"container") string_"container" )subscript (string_"images") string_"images" )subscript (identifier_value) identifier_value )attribute )comparison_operator )assert_statement (expression_statement (assignment (identifier_tmp_dir) identifier_tmp_dir (call (attribute (identifier_local) identifier_local (identifier_path) identifier_path )attribute (argument_list (call (identifier_str) identifier_str (argument_list (subscript (identifier_CFG) identifier_CFG (string_"tmp_dir") string_"tmp_dir" )subscript )argument_list )call )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_target_dir) identifier_target_dir (binary_operator (identifier_tmp_dir) identifier_tmp_dir (attribute (identifier_self) identifier_self (identifier_name) identifier_name )attribute )binary_operator )assignment )expression_statement (if_statement (boolean_operator (not_operator (call (attribute (identifier_target_dir) identifier_target_dir (identifier_exists) identifier_exists )attribute (argument_list )argument_list )call )not_operator (not_operator (call (identifier_is_valid) identifier_is_valid (argument_list (identifier_self) identifier_self (identifier_target_dir) identifier_target_dir )argument_list )call )not_operator )boolean_operator (block (expression_statement (call (identifier_unpack) identifier_unpack (argument_list (identifier_self) identifier_self (identifier_target_dir) identifier_target_dir )argument_list )call )expression_statement )block )if_statement (return_statement (identifier_target_dir) identifier_target_dir )return_statement )block )function_definition )module
Finds the current location of a container. Also unpacks the project if necessary. Returns: target: The path, where the container lies in the end.
(module (function_definition (function_name___get_host) function_name___get_host (parameters (identifier_node) identifier_node (identifier_vm_) identifier_vm_ )parameters (block (if_statement (boolean_operator (comparison_operator (call (identifier___get_ssh_interface) identifier___get_ssh_interface (argument_list (identifier_vm_) identifier_vm_ )argument_list )call (string_'private_ips') string_'private_ips' )comparison_operator (comparison_operator (subscript (identifier_vm_) identifier_vm_ (string_'external_ip') string_'external_ip' )subscript (None) None )comparison_operator )boolean_operator (block (expression_statement (assignment (identifier_ip_address) identifier_ip_address (subscript (attribute (identifier_node) identifier_node (identifier_private_ips) identifier_private_ips )attribute (integer_0) integer_0 )subscript )assignment )expression_statement (expression_statement (call (attribute (identifier_log) identifier_log (identifier_info) identifier_info )attribute (argument_list (string_'Salt node data. Private_ip: %s') string_'Salt node data. Private_ip: %s' (identifier_ip_address) identifier_ip_address )argument_list )call )expression_statement )block (else_clause (block (expression_statement (assignment (identifier_ip_address) identifier_ip_address (subscript (attribute (identifier_node) identifier_node (identifier_public_ips) identifier_public_ips )attribute (integer_0) integer_0 )subscript )assignment )expression_statement (expression_statement (call (attribute (identifier_log) identifier_log (identifier_info) identifier_info )attribute (argument_list (string_'Salt node data. Public_ip: %s') string_'Salt node data. Public_ip: %s' (identifier_ip_address) identifier_ip_address )argument_list )call )expression_statement )block )else_clause )if_statement (if_statement (identifier_ip_address) identifier_ip_address (block (return_statement (identifier_ip_address) identifier_ip_address )return_statement )block )if_statement (return_statement (attribute (identifier_node) identifier_node (identifier_name) identifier_name )attribute )return_statement )block )function_definition )module
Return public IP, private IP, or hostname for the libcloud 'node' object
(module (function_definition (function_name_get_gene_name) function_name_get_gene_name (parameters (identifier_cls) identifier_cls (identifier_entry) identifier_entry )parameters (block (expression_statement (assignment (identifier_gene_name) identifier_gene_name (call (attribute (identifier_entry) identifier_entry (identifier_find) identifier_find )attribute (argument_list (string_"./gene/name[@type='primary']") string_"./gene/name[@type='primary']" )argument_list )call )assignment )expression_statement (return_statement (conditional_expression (attribute (identifier_gene_name) identifier_gene_name (identifier_text) identifier_text )attribute (boolean_operator (comparison_operator (identifier_gene_name) identifier_gene_name (None) None )comparison_operator (call (attribute (attribute (identifier_gene_name) identifier_gene_name (identifier_text) identifier_text )attribute (identifier_strip) identifier_strip )attribute (argument_list )argument_list )call )boolean_operator (None) None )conditional_expression )return_statement )block )function_definition )module
get primary gene name from XML node entry :param entry: XML node entry :return: str
(module (function_definition (function_name__find_most_recent_backup) function_name__find_most_recent_backup (parameters (typed_parameter (identifier_normal_path) identifier_normal_path (type (generic_type (identifier_Optional) identifier_Optional (type_parameter (type (identifier_str) identifier_str )type )type_parameter )generic_type )type )typed_parameter )parameters (type (generic_type (identifier_Optional) identifier_Optional (type_parameter (type (identifier_str) identifier_str )type )type_parameter )generic_type )type (block (if_statement (comparison_operator (identifier_normal_path) identifier_normal_path (None) None )comparison_operator (block (return_statement (None) None )return_statement )block )if_statement (if_statement (call (attribute (attribute (identifier_os) identifier_os (identifier_path) identifier_path )attribute (identifier_exists) identifier_exists )attribute (argument_list (identifier_normal_path) identifier_normal_path )argument_list )call (block (return_statement (identifier_normal_path) identifier_normal_path )return_statement )block )if_statement (expression_statement (assignment (pattern_list (identifier_dirname) identifier_dirname (identifier_basename) identifier_basename )pattern_list (call (attribute (attribute (identifier_os) identifier_os (identifier_path) identifier_path )attribute (identifier_split) identifier_split )attribute (argument_list (identifier_normal_path) identifier_normal_path )argument_list )call )assignment )expression_statement (expression_statement (assignment (pattern_list (identifier_root) identifier_root (identifier_ext) identifier_ext )pattern_list (call (attribute (attribute (identifier_os) identifier_os (identifier_path) identifier_path )attribute (identifier_splitext) identifier_splitext )attribute (argument_list (identifier_basename) identifier_basename )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_backups) identifier_backups (list_comprehension (identifier_fi) identifier_fi (for_in_clause (identifier_fi) identifier_fi (call (attribute (identifier_os) identifier_os (identifier_listdir) identifier_listdir )attribute (argument_list (identifier_dirname) identifier_dirname )argument_list )call )for_in_clause (if_clause (boolean_operator (call (attribute (identifier_fi) identifier_fi (identifier_startswith) identifier_startswith )attribute (argument_list (identifier_root) identifier_root )argument_list )call (call (attribute (identifier_fi) identifier_fi (identifier_endswith) identifier_endswith )attribute (argument_list (identifier_ext) identifier_ext )argument_list )call )boolean_operator )if_clause )list_comprehension )assignment )expression_statement (expression_statement (assignment (identifier_ts_re) identifier_ts_re (call (attribute (identifier_re) identifier_re (identifier_compile) identifier_compile )attribute (argument_list (binary_operator (binary_operator (string_r'.*-([0-9]+)') string_r'.*-([0-9]+)' (identifier_ext) identifier_ext )binary_operator (string_'$') string_'$' )binary_operator )argument_list )call )assignment )expression_statement (function_definition (function_name_ts_compare) function_name_ts_compare (parameters (identifier_filename) identifier_filename )parameters (block (expression_statement (assignment (identifier_match) identifier_match (call (attribute (identifier_ts_re) identifier_ts_re (identifier_match) identifier_match )attribute (argument_list (identifier_filename) identifier_filename )argument_list )call )assignment )expression_statement (if_statement (not_operator (identifier_match) identifier_match )not_operator (block (return_statement (unary_operator (integer_1) integer_1 )unary_operator )return_statement )block (else_clause (block (return_statement (call (identifier_int) identifier_int (argument_list (call (attribute (identifier_match) identifier_match (identifier_group) identifier_group )attribute (argument_list (integer_1) integer_1 )argument_list )call )argument_list )call )return_statement )block )else_clause )if_statement )block )function_definition (expression_statement (assignment (identifier_backups_sorted) identifier_backups_sorted (call (identifier_sorted) identifier_sorted (argument_list (identifier_backups) identifier_backups (keyword_argument (identifier_key) identifier_key (identifier_ts_compare) identifier_ts_compare )keyword_argument )argument_list )call )assignment )expression_statement (if_statement (not_operator (identifier_backups_sorted) identifier_backups_sorted )not_operator (block (return_statement (None) None )return_statement )block )if_statement (return_statement (call (attribute (attribute (identifier_os) identifier_os (identifier_path) identifier_path )attribute (identifier_join) identifier_join )attribute (argument_list (identifier_dirname) identifier_dirname (subscript (identifier_backups_sorted) identifier_backups_sorted (unary_operator (integer_1) integer_1 )unary_operator )subscript )argument_list )call )return_statement )block )function_definition )module
Find the most recent old settings to migrate. The input is the path to an unqualified settings file - e.g. /mnt/usbdrive/config/robotSettings.json This will return - None if the input is None (to support chaining from dict.get()) - The input if it exists, or - The file named normal_path-TIMESTAMP.json with the highest timestamp if one can be found, or - None
(module (function_definition (function_name_get_api_version) function_name_get_api_version (parameters (identifier_base_url) identifier_base_url (default_parameter (identifier_api_version) identifier_api_version (None) None )default_parameter (default_parameter (identifier_timeout) identifier_timeout (integer_10) integer_10 )default_parameter (default_parameter (identifier_verify) identifier_verify (True) True )default_parameter )parameters (block (expression_statement (assignment (identifier_versions) identifier_versions (call (identifier_available_api_versions) identifier_available_api_versions (argument_list (identifier_base_url) identifier_base_url (identifier_timeout) identifier_timeout (identifier_verify) identifier_verify )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_newest_version) identifier_newest_version (call (identifier_max) identifier_max (argument_list (list_comprehension (call (identifier_float) identifier_float (argument_list (identifier_i) identifier_i )argument_list )call (for_in_clause (identifier_i) identifier_i (identifier_versions) identifier_versions )for_in_clause )list_comprehension )argument_list )call )assignment )expression_statement (if_statement (comparison_operator (identifier_api_version) identifier_api_version (None) None )comparison_operator (block (expression_statement (assignment (identifier_api_version) identifier_api_version (identifier_newest_version) identifier_newest_version )assignment )expression_statement )block (else_clause (block (if_statement (comparison_operator (identifier_api_version) identifier_api_version (identifier_versions) identifier_versions )comparison_operator (block (expression_statement (assignment (identifier_api_version) identifier_api_version (identifier_newest_version) identifier_newest_version )assignment )expression_statement )block )if_statement )block )else_clause )if_statement (return_statement (identifier_api_version) identifier_api_version )return_statement )block )function_definition )module
Get the API version specified or resolve the latest version :return api version :rtype: float
(module (function_definition (function_name_charm_icon_url) function_name_charm_icon_url (parameters (identifier_self) identifier_self (identifier_charm_id) identifier_charm_id (default_parameter (identifier_channel) identifier_channel (None) None )default_parameter )parameters (block (expression_statement (assignment (identifier_url) identifier_url (call (attribute (string_'{}/{}/icon.svg') string_'{}/{}/icon.svg' (identifier_format) identifier_format )attribute (argument_list (attribute (identifier_self) identifier_self (identifier_url) identifier_url )attribute (call (identifier__get_path) identifier__get_path (argument_list (identifier_charm_id) identifier_charm_id )argument_list )call )argument_list )call )assignment )expression_statement (return_statement (call (identifier__add_channel) identifier__add_channel (argument_list (identifier_url) identifier_url (identifier_channel) identifier_channel )argument_list )call )return_statement )block )function_definition )module
Generate the path to the icon for charms. @param charm_id The ID of the charm. @param channel Optional channel name. @return The url to the icon.
(module (function_definition (function_name_key_rule) function_name_key_rule (parameters (identifier_self) identifier_self (identifier_regex) identifier_regex (identifier_verifier) identifier_verifier )parameters (block (if_statement (comparison_operator (identifier_regex) identifier_regex (None) None )comparison_operator (block (expression_statement (assignment (identifier_regex) identifier_regex (call (attribute (identifier_re) identifier_re (identifier_compile) identifier_compile )attribute (argument_list (identifier_regex) identifier_regex )argument_list )call )assignment )expression_statement )block )if_statement (expression_statement (call (attribute (attribute (identifier_self) identifier_self (identifier__additional_key_rules) identifier__additional_key_rules )attribute (identifier_append) identifier_append )attribute (argument_list (tuple (identifier_regex) identifier_regex (identifier_verifier) identifier_verifier )tuple )argument_list )call )expression_statement )block )function_definition )module
Add a rule with a pattern that should apply to all keys. Any key not explicitly listed in an add_required or add_optional rule must match ONE OF the rules given in a call to key_rule(). So these rules are all OR'ed together. In this case you should pass a raw string specifying a regex that is used to determine if the rule is used to check a given key. Args: regex (str): The regular expression used to match the rule or None if this should apply to all verifier (Verifier): The verification rule
(module (function_definition (function_name_print_coordinates) function_name_print_coordinates (parameters (identifier_atoms) identifier_atoms (identifier_V) identifier_V (default_parameter (identifier_title) identifier_title (string_"") string_"" )default_parameter )parameters (block (expression_statement (call (identifier_print) identifier_print (argument_list (call (identifier_set_coordinates) identifier_set_coordinates (argument_list (identifier_atoms) identifier_atoms (identifier_V) identifier_V (keyword_argument (identifier_title) identifier_title (identifier_title) identifier_title )keyword_argument )argument_list )call )argument_list )call )expression_statement (return_statement )return_statement )block )function_definition )module
Print coordinates V with corresponding atoms to stdout in XYZ format. Parameters ---------- atoms : list List of element types V : array (N,3) matrix of atomic coordinates title : string (optional) Title of molecule
(module (function_definition (function_name_penalty_satisfaction) function_name_penalty_satisfaction (parameters (identifier_response) identifier_response (identifier_bqm) identifier_bqm )parameters (block (expression_statement (assignment (identifier_record) identifier_record (attribute (identifier_response) identifier_response (identifier_record) identifier_record )attribute )assignment )expression_statement (expression_statement (assignment (identifier_label_dict) identifier_label_dict (attribute (attribute (identifier_response) identifier_response (identifier_variables) identifier_variables )attribute (identifier_index) identifier_index )attribute )assignment )expression_statement (if_statement (comparison_operator (call (identifier_len) identifier_len (argument_list (subscript (attribute (identifier_bqm) identifier_bqm (identifier_info) identifier_info )attribute (string_'reduction') string_'reduction' )subscript )argument_list )call (integer_0) integer_0 )comparison_operator (block (return_statement (call (attribute (identifier_np) identifier_np (identifier_array) identifier_array )attribute (argument_list (binary_operator (list (integer_1) integer_1 )list (call (identifier_len) identifier_len (argument_list (attribute (identifier_record) identifier_record (identifier_sample) identifier_sample )attribute )argument_list )call )binary_operator )argument_list )call )return_statement )block )if_statement (expression_statement (assignment (identifier_penalty_vector) identifier_penalty_vector (call (attribute (identifier_np) identifier_np (identifier_prod) identifier_prod )attribute (argument_list (list_comprehension (comparison_operator (binary_operator (subscript (attribute (identifier_record) identifier_record (identifier_sample) identifier_sample )attribute (slice (colon) colon )slice (subscript (identifier_label_dict) identifier_label_dict (identifier_qi) identifier_qi )subscript )subscript (subscript (attribute (identifier_record) identifier_record (identifier_sample) identifier_sample )attribute (slice (colon) colon )slice (subscript (identifier_label_dict) identifier_label_dict (identifier_qj) identifier_qj )subscript )subscript )binary_operator (subscript (attribute (identifier_record) identifier_record (identifier_sample) identifier_sample )attribute (slice (colon) colon )slice (subscript (identifier_label_dict) identifier_label_dict (subscript (identifier_valdict) identifier_valdict (string_'product') string_'product' )subscript )subscript )subscript )comparison_operator (for_in_clause (pattern_list (tuple_pattern (identifier_qi) identifier_qi (identifier_qj) identifier_qj )tuple_pattern (identifier_valdict) identifier_valdict )pattern_list (call (attribute (subscript (attribute (identifier_bqm) identifier_bqm (identifier_info) identifier_info )attribute (string_'reduction') string_'reduction' )subscript (identifier_items) identifier_items )attribute (argument_list )argument_list )call )for_in_clause )list_comprehension (keyword_argument (identifier_axis) identifier_axis (integer_0) integer_0 )keyword_argument )argument_list )call )assignment )expression_statement (return_statement (identifier_penalty_vector) identifier_penalty_vector )return_statement )block )function_definition )module
Creates a penalty satisfaction list Given a sampleSet and a bqm object, will create a binary list informing whether the penalties introduced during degree reduction are satisfied for each sample in sampleSet Args: response (:obj:`.SampleSet`): Samples corresponding to provided bqm bqm (:obj:`.BinaryQuadraticModel`): a bqm object that contains its reduction info. Returns: :obj:`numpy.ndarray`: a binary array of penalty satisfaction information
(module (function_definition (function_name_get_logger) function_name_get_logger (parameters (default_parameter (identifier_name) identifier_name (None) None )default_parameter )parameters (block (expression_statement (assignment (identifier_logger) identifier_logger (call (attribute (identifier_logging) identifier_logging (identifier_getLogger) identifier_getLogger )attribute (argument_list (identifier_name) identifier_name )argument_list )call )assignment )expression_statement (if_statement (comparison_operator (call (identifier_len) identifier_len (argument_list (attribute (identifier_logger) identifier_logger (identifier_handlers) identifier_handlers )attribute )argument_list )call (integer_0) integer_0 )comparison_operator (block (expression_statement (assignment (identifier_logger) identifier_logger (call (identifier_add_stream_handler) identifier_add_stream_handler (argument_list (identifier_logger) identifier_logger )argument_list )call )assignment )expression_statement )block )if_statement (return_statement (identifier_logger) identifier_logger )return_statement )block )function_definition )module
Get a logging handle. As with ``setup_logging``, a stream handler is added to the log handle. Arguments: name (str): Name of the log handle. Default is ``None``.
(module (function_definition (function_name_write_alignment) function_name_write_alignment (parameters (identifier_self) identifier_self (identifier_filename) identifier_filename (identifier_file_format) identifier_file_format (default_parameter (identifier_interleaved) identifier_interleaved (None) None )default_parameter )parameters (block (if_statement (comparison_operator (identifier_file_format) identifier_file_format (string_'phylip') string_'phylip' )comparison_operator (block (expression_statement (assignment (identifier_file_format) identifier_file_format (string_'phylip-relaxed') string_'phylip-relaxed' )assignment )expression_statement )block )if_statement (expression_statement (call (attribute (identifier_AlignIO) identifier_AlignIO (identifier_write) identifier_write )attribute (argument_list (attribute (identifier_self) identifier_self (identifier__msa) identifier__msa )attribute (identifier_filename) identifier_filename (identifier_file_format) identifier_file_format )argument_list )call )expression_statement )block )function_definition )module
Write the alignment to file using Bio.AlignIO
(module (function_definition (function_name_diff_list) function_name_diff_list (parameters (identifier_self) identifier_self (identifier_list1) identifier_list1 (identifier_list2) identifier_list2 )parameters (block (for_statement (identifier_key) identifier_key (identifier_list1) identifier_list1 (block (if_statement (boolean_operator (comparison_operator (identifier_key) identifier_key (identifier_list2) identifier_list2 )comparison_operator (comparison_operator (subscript (identifier_list2) identifier_list2 (identifier_key) identifier_key )subscript (subscript (identifier_list1) identifier_list1 (identifier_key) identifier_key )subscript )comparison_operator )boolean_operator (block (print_statement (identifier_key) identifier_key )print_statement )block (elif_clause (comparison_operator (identifier_key) identifier_key (identifier_list2) identifier_list2 )comparison_operator (block (print_statement (identifier_key) identifier_key )print_statement )block )elif_clause )if_statement )block )for_statement )block )function_definition )module
Extracts differences between lists. For debug purposes
(module (function_definition (function_name_astuple) function_name_astuple (parameters (identifier_self) identifier_self (default_parameter (identifier_encoding) identifier_encoding (None) None )default_parameter )parameters (block (if_statement (not_operator (identifier_encoding) identifier_encoding )not_operator (block (return_statement (tuple (attribute (identifier_self) identifier_self (identifier_id) identifier_id )attribute (attribute (identifier_self) identifier_self (identifier_seqid) identifier_seqid )attribute (attribute (identifier_self) identifier_self (identifier_source) identifier_source )attribute (attribute (identifier_self) identifier_self (identifier_featuretype) identifier_featuretype )attribute (attribute (identifier_self) identifier_self (identifier_start) identifier_start )attribute (attribute (identifier_self) identifier_self (identifier_end) identifier_end )attribute (attribute (identifier_self) identifier_self (identifier_score) identifier_score )attribute (attribute (identifier_self) identifier_self (identifier_strand) identifier_strand )attribute (attribute (identifier_self) identifier_self (identifier_frame) identifier_frame )attribute (call (attribute (identifier_helpers) identifier_helpers (identifier__jsonify) identifier__jsonify )attribute (argument_list (attribute (identifier_self) identifier_self (identifier_attributes) identifier_attributes )attribute )argument_list )call (call (attribute (identifier_helpers) identifier_helpers (identifier__jsonify) identifier__jsonify )attribute (argument_list (attribute (identifier_self) identifier_self (identifier_extra) identifier_extra )attribute )argument_list )call (call (attribute (identifier_self) identifier_self (identifier_calc_bin) identifier_calc_bin )attribute (argument_list )argument_list )call )tuple )return_statement )block )if_statement (return_statement (tuple (call (attribute (attribute (identifier_self) identifier_self (identifier_id) identifier_id )attribute (identifier_decode) identifier_decode )attribute (argument_list (identifier_encoding) identifier_encoding )argument_list )call (call (attribute (attribute (identifier_self) identifier_self (identifier_seqid) identifier_seqid )attribute (identifier_decode) identifier_decode )attribute (argument_list (identifier_encoding) identifier_encoding )argument_list )call (call (attribute (attribute (identifier_self) identifier_self (identifier_source) identifier_source )attribute (identifier_decode) identifier_decode )attribute (argument_list (identifier_encoding) identifier_encoding )argument_list )call (call (attribute (attribute (identifier_self) identifier_self (identifier_featuretype) identifier_featuretype )attribute (identifier_decode) identifier_decode )attribute (argument_list (identifier_encoding) identifier_encoding )argument_list )call (attribute (identifier_self) identifier_self (identifier_start) identifier_start )attribute (attribute (identifier_self) identifier_self (identifier_end) identifier_end )attribute (call (attribute (attribute (identifier_self) identifier_self (identifier_score) identifier_score )attribute (identifier_decode) identifier_decode )attribute (argument_list (identifier_encoding) identifier_encoding )argument_list )call (call (attribute (attribute (identifier_self) identifier_self (identifier_strand) identifier_strand )attribute (identifier_decode) identifier_decode )attribute (argument_list (identifier_encoding) identifier_encoding )argument_list )call (call (attribute (attribute (identifier_self) identifier_self (identifier_frame) identifier_frame )attribute (identifier_decode) identifier_decode )attribute (argument_list (identifier_encoding) identifier_encoding )argument_list )call (call (attribute (call (attribute (identifier_helpers) identifier_helpers (identifier__jsonify) identifier__jsonify )attribute (argument_list (attribute (identifier_self) identifier_self (identifier_attributes) identifier_attributes )attribute )argument_list )call (identifier_decode) identifier_decode )attribute (argument_list (identifier_encoding) identifier_encoding )argument_list )call (call (attribute (call (attribute (identifier_helpers) identifier_helpers (identifier__jsonify) identifier__jsonify )attribute (argument_list (attribute (identifier_self) identifier_self (identifier_extra) identifier_extra )attribute )argument_list )call (identifier_decode) identifier_decode )attribute (argument_list (identifier_encoding) identifier_encoding )argument_list )call (call (attribute (identifier_self) identifier_self (identifier_calc_bin) identifier_calc_bin )attribute (argument_list )argument_list )call )tuple )return_statement )block )function_definition )module
Return a tuple suitable for import into a database. Attributes field and extra field jsonified into strings. The order of fields is such that they can be supplied as arguments for the query defined in :attr:`gffutils.constants._INSERT`. If `encoding` is not None, then convert string fields to unicode using the provided encoding. Returns ------- Tuple
(module (function_definition (function_name_find_by_project) function_name_find_by_project (parameters (identifier_self) identifier_self (identifier_project) identifier_project (default_parameter (identifier_params) identifier_params (dictionary )dictionary )default_parameter (dictionary_splat_pattern (identifier_options) identifier_options )dictionary_splat_pattern )parameters (block (expression_statement (assignment (identifier_path) identifier_path (binary_operator (string_"/projects/%s/sections") string_"/projects/%s/sections" (parenthesized_expression (identifier_project) identifier_project )parenthesized_expression )binary_operator )assignment )expression_statement (return_statement (call (attribute (attribute (identifier_self) identifier_self (identifier_client) identifier_client )attribute (identifier_get) identifier_get )attribute (argument_list (identifier_path) identifier_path (identifier_params) identifier_params (dictionary_splat (identifier_options) identifier_options )dictionary_splat )argument_list )call )return_statement )block )function_definition )module
Returns the compact records for all sections in the specified project. Parameters ---------- project : {Id} The project to get sections from. [params] : {Object} Parameters for the request
(module (function_definition (function_name_Parse) function_name_Parse (parameters (identifier_self) identifier_self (identifier_raw_data) identifier_raw_data )parameters (block (expression_statement (assignment (attribute (identifier_self) identifier_self (identifier_results) identifier_results )attribute (identifier_raw_data) identifier_raw_data )assignment )expression_statement (for_statement (identifier_f) identifier_f (attribute (identifier_self) identifier_self (identifier_filters) identifier_filters )attribute (block (expression_statement (assignment (attribute (identifier_self) identifier_self (identifier_results) identifier_results )attribute (call (attribute (identifier_f) identifier_f (identifier_Parse) identifier_Parse )attribute (argument_list (attribute (identifier_self) identifier_self (identifier_results) identifier_results )attribute )argument_list )call )assignment )expression_statement )block )for_statement (return_statement (attribute (identifier_self) identifier_self (identifier_results) identifier_results )attribute )return_statement )block )function_definition )module
Take the results and yield results that passed through the filters. The output of each filter is used as the input for successive filters. Args: raw_data: An iterable series of rdf values. Returns: A list of rdf values that matched all filters.
(module (function_definition (function_name_join_paths) function_name_join_paths (parameters (typed_parameter (identifier_fnames) identifier_fnames (type (identifier_FilePathList) identifier_FilePathList )type )typed_parameter (typed_default_parameter (identifier_path) identifier_path (type (identifier_PathOrStr) identifier_PathOrStr )type (string_'.') string_'.' )typed_default_parameter )parameters (type (generic_type (identifier_Collection) identifier_Collection (type_parameter (type (identifier_Path) identifier_Path )type )type_parameter )generic_type )type (block (expression_statement (string_"Join `path` to every file name in `fnames`.") string_"Join `path` to every file name in `fnames`." )expression_statement (expression_statement (assignment (identifier_path) identifier_path (call (identifier_Path) identifier_Path (argument_list (identifier_path) identifier_path )argument_list )call )assignment )expression_statement (return_statement (list_comprehension (call (identifier_join_path) identifier_join_path (argument_list (identifier_o) identifier_o (identifier_path) identifier_path )argument_list )call (for_in_clause (identifier_o) identifier_o (identifier_fnames) identifier_fnames )for_in_clause )list_comprehension )return_statement )block )function_definition )module
Join `path` to every file name in `fnames`.
(module (function_definition (function_name__determine_rotated_logfile) function_name__determine_rotated_logfile (parameters (identifier_self) identifier_self )parameters (block (expression_statement (assignment (identifier_rotated_filename) identifier_rotated_filename (call (attribute (identifier_self) identifier_self (identifier__check_rotated_filename_candidates) identifier__check_rotated_filename_candidates )attribute (argument_list )argument_list )call )assignment )expression_statement (if_statement (boolean_operator (identifier_rotated_filename) identifier_rotated_filename (call (identifier_exists) identifier_exists (argument_list (identifier_rotated_filename) identifier_rotated_filename )argument_list )call )boolean_operator (block (if_statement (comparison_operator (attribute (call (identifier_stat) identifier_stat (argument_list (identifier_rotated_filename) identifier_rotated_filename )argument_list )call (identifier_st_ino) identifier_st_ino )attribute (attribute (identifier_self) identifier_self (identifier__offset_file_inode) identifier__offset_file_inode )attribute )comparison_operator (block (return_statement (identifier_rotated_filename) identifier_rotated_filename )return_statement )block )if_statement (if_statement (comparison_operator (attribute (call (identifier_stat) identifier_stat (argument_list (attribute (identifier_self) identifier_self (identifier_filename) identifier_filename )attribute )argument_list )call (identifier_st_ino) identifier_st_ino )attribute (attribute (identifier_self) identifier_self (identifier__offset_file_inode) identifier__offset_file_inode )attribute )comparison_operator (block (if_statement (attribute (identifier_self) identifier_self (identifier_copytruncate) identifier_copytruncate )attribute (block (return_statement (identifier_rotated_filename) identifier_rotated_filename )return_statement )block (else_clause (block (expression_statement (call (attribute (attribute (identifier_sys) identifier_sys (identifier_stderr) identifier_stderr )attribute (identifier_write) identifier_write )attribute (argument_list (binary_operator (concatenated_string (string_"[pygtail] [WARN] file size of %s shrank, and copytruncate support is ") string_"[pygtail] [WARN] file size of %s shrank, and copytruncate support is " (string_"disabled (expected at least %d bytes, was %d bytes).\n") string_"disabled (expected at least %d bytes, was %d bytes).\n" )concatenated_string (tuple (attribute (identifier_self) identifier_self (identifier_filename) identifier_filename )attribute (attribute (identifier_self) identifier_self (identifier__offset) identifier__offset )attribute (attribute (call (identifier_stat) identifier_stat (argument_list (attribute (identifier_self) identifier_self (identifier_filename) identifier_filename )attribute )argument_list )call (identifier_st_size) identifier_st_size )attribute )tuple )binary_operator )argument_list )call )expression_statement )block )else_clause )if_statement )block )if_statement )block )if_statement (return_statement (None) None )return_statement )block )function_definition )module
We suspect the logfile has been rotated, so try to guess what the rotated filename is, and return it.
(module (function_definition (function_name__get_build_command) function_name__get_build_command (parameters (identifier_self) identifier_self (typed_parameter (identifier_mkdocs_site_path) identifier_mkdocs_site_path (type (identifier_Path) identifier_Path )type )typed_parameter )parameters (type (identifier_str) identifier_str )type (block (expression_statement (assignment (identifier_components) identifier_components (list (call (attribute (attribute (identifier_self) identifier_self (identifier__mkdocs_config) identifier__mkdocs_config )attribute (identifier_get) identifier_get )attribute (argument_list (string_'mkdocs_path') string_'mkdocs_path' (string_'mkdocs') string_'mkdocs' )argument_list )call )list )assignment )expression_statement (expression_statement (call (attribute (identifier_components) identifier_components (identifier_append) identifier_append )attribute (argument_list (string_'build') string_'build' )argument_list )call )expression_statement (expression_statement (call (attribute (identifier_components) identifier_components (identifier_append) identifier_append )attribute (argument_list (string_f'-d "{self._escape_control_characters(str(mkdocs_site_path))}"') string_f'-d "{self._escape_control_characters(str(mkdocs_site_path))}"' )argument_list )call )expression_statement (expression_statement (assignment (identifier_command) identifier_command (call (attribute (string_' ') string_' ' (identifier_join) identifier_join )attribute (argument_list (identifier_components) identifier_components )argument_list )call )assignment )expression_statement (expression_statement (call (attribute (attribute (identifier_self) identifier_self (identifier_logger) identifier_logger )attribute (identifier_debug) identifier_debug )attribute (argument_list (string_f'Build command: {command}') string_f'Build command: {command}' )argument_list )call )expression_statement (return_statement (identifier_command) identifier_command )return_statement )block )function_definition )module
Generate ``mkdocs build`` command to build the site. :param mkdocs_site_path: Path to the output directory for the site
(module (function_definition (function_name__ReloadArtifacts) function_name__ReloadArtifacts (parameters (identifier_self) identifier_self )parameters (block (expression_statement (assignment (attribute (identifier_self) identifier_self (identifier__artifacts) identifier__artifacts )attribute (dictionary )dictionary )assignment )expression_statement (expression_statement (call (attribute (identifier_self) identifier_self (identifier__LoadArtifactsFromFiles) identifier__LoadArtifactsFromFiles )attribute (argument_list (call (attribute (attribute (identifier_self) identifier_self (identifier__sources) identifier__sources )attribute (identifier_GetAllFiles) identifier_GetAllFiles )attribute (argument_list )argument_list )call )argument_list )call )expression_statement (expression_statement (call (attribute (identifier_self) identifier_self (identifier_ReloadDatastoreArtifacts) identifier_ReloadDatastoreArtifacts )attribute (argument_list )argument_list )call )expression_statement )block )function_definition )module
Load artifacts from all sources.
(module (function_definition (function_name_run_samtools) function_name_run_samtools (parameters (identifier_align_bams) identifier_align_bams (identifier_items) identifier_items (identifier_ref_file) identifier_ref_file (identifier_assoc_files) identifier_assoc_files (default_parameter (identifier_region) identifier_region (None) None )default_parameter (default_parameter (identifier_out_file) identifier_out_file (None) None )default_parameter )parameters (block (return_statement (call (identifier_shared_variantcall) identifier_shared_variantcall (argument_list (identifier__call_variants_samtools) identifier__call_variants_samtools (string_"samtools") string_"samtools" (identifier_align_bams) identifier_align_bams (identifier_ref_file) identifier_ref_file (identifier_items) identifier_items (identifier_assoc_files) identifier_assoc_files (identifier_region) identifier_region (identifier_out_file) identifier_out_file )argument_list )call )return_statement )block )function_definition )module
Detect SNPs and indels with samtools mpileup and bcftools.
(module (function_definition (function_name_does_schema_exist) function_name_does_schema_exist (parameters (identifier_self) identifier_self (identifier_connection) identifier_connection )parameters (block (if_statement (comparison_operator (string_'.') string_'.' (attribute (identifier_self) identifier_self (identifier_table) identifier_table )attribute )comparison_operator (block (expression_statement (assignment (identifier_query) identifier_query (parenthesized_expression (concatenated_string (string_"select 1 as schema_exists ") string_"select 1 as schema_exists " (string_"from pg_namespace ") string_"from pg_namespace " (string_"where nspname = lower(%s) limit 1") string_"where nspname = lower(%s) limit 1" )concatenated_string )parenthesized_expression )assignment )expression_statement )block (else_clause (block (return_statement (True) True )return_statement )block )else_clause )if_statement (expression_statement (assignment (identifier_cursor) identifier_cursor (call (attribute (identifier_connection) identifier_connection (identifier_cursor) identifier_cursor )attribute (argument_list )argument_list )call )assignment )expression_statement (try_statement (block (expression_statement (assignment (identifier_schema) identifier_schema (subscript (call (attribute (attribute (identifier_self) identifier_self (identifier_table) identifier_table )attribute (identifier_split) identifier_split )attribute (argument_list (string_'.') string_'.' )argument_list )call (integer_0) integer_0 )subscript )assignment )expression_statement (expression_statement (call (attribute (identifier_cursor) identifier_cursor (identifier_execute) identifier_execute )attribute (argument_list (identifier_query) identifier_query (list (identifier_schema) identifier_schema )list )argument_list )call )expression_statement (expression_statement (assignment (identifier_result) identifier_result (call (attribute (identifier_cursor) identifier_cursor (identifier_fetchone) identifier_fetchone )attribute (argument_list )argument_list )call )assignment )expression_statement (return_statement (call (identifier_bool) identifier_bool (argument_list (identifier_result) identifier_result )argument_list )call )return_statement )block (finally_clause (block (expression_statement (call (attribute (identifier_cursor) identifier_cursor (identifier_close) identifier_close )attribute (argument_list )argument_list )call )expression_statement )block )finally_clause )try_statement )block )function_definition )module
Determine whether the schema already exists.
(module (function_definition (function_name_distribute) function_name_distribute (parameters (identifier_self) identifier_self (identifier_f) identifier_f (identifier_n) identifier_n )parameters (block (if_statement (comparison_operator (attribute (identifier_self) identifier_self (identifier_pool) identifier_pool )attribute (None) None )comparison_operator (block (return_statement (list_comprehension (call (identifier_f) identifier_f (argument_list (identifier_i) identifier_i )argument_list )call (for_in_clause (identifier_i) identifier_i (call (identifier_range) identifier_range (argument_list (identifier_n) identifier_n )argument_list )call )for_in_clause )list_comprehension )return_statement )block (else_clause (block (return_statement (call (attribute (attribute (identifier_self) identifier_self (identifier_pool) identifier_pool )attribute (identifier_map) identifier_map )attribute (argument_list (identifier_f) identifier_f (call (identifier_range) identifier_range (argument_list (identifier_n) identifier_n )argument_list )call )argument_list )call )return_statement )block )else_clause )if_statement )block )function_definition )module
Distribute the computations amongst the multiprocessing pools Parameters ---------- f : function Function to be distributed to the processors n : int The values in range(0,n) will be passed as arguments to the function f.
(module (function_definition (function_name_restore_default) function_name_restore_default (parameters (identifier_self) identifier_self (identifier_index) identifier_index )parameters (block (expression_statement (assignment (identifier_spec) identifier_spec (call (attribute (identifier_self) identifier_self (identifier_get_configspec_str) identifier_get_configspec_str )attribute (argument_list (identifier_index) identifier_index )argument_list )call )assignment )expression_statement (if_statement (boolean_operator (comparison_operator (identifier_spec) identifier_spec (None) None )comparison_operator (call (identifier_isinstance) identifier_isinstance (argument_list (identifier_spec) identifier_spec (identifier_Section) identifier_Section )argument_list )call )boolean_operator (block (return_statement )return_statement )block )if_statement (try_statement (block (expression_statement (assignment (identifier_default) identifier_default (call (attribute (attribute (identifier_self) identifier_self (identifier__vld) identifier__vld )attribute (identifier_get_default_value) identifier_get_default_value )attribute (argument_list (identifier_spec) identifier_spec )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_defaultstr) identifier_defaultstr (call (attribute (identifier_self) identifier_self (identifier__val_to_str) identifier__val_to_str )attribute (argument_list (identifier_default) identifier_default )argument_list )call )assignment )expression_statement (expression_statement (call (attribute (identifier_self) identifier_self (identifier_setData) identifier_setData )attribute (argument_list (identifier_index) identifier_index (identifier_defaultstr) identifier_defaultstr )argument_list )call )expression_statement )block (except_clause (identifier_KeyError) identifier_KeyError (block (raise_statement (call (identifier_ConfigError) identifier_ConfigError (argument_list (binary_operator (string_"Missing Default Value in spec: \"%s\"") string_"Missing Default Value in spec: \"%s\"" (identifier_spec) identifier_spec )binary_operator )argument_list )call )raise_statement )block )except_clause )try_statement )block )function_definition )module
Set the value of the given index row to its default :param index: :type index: :returns: :rtype: :raises:
(module (function_definition (function_name_get_resource_attribute) function_name_get_resource_attribute (parameters (identifier_resource_attr_id) identifier_resource_attr_id (dictionary_splat_pattern (identifier_kwargs) identifier_kwargs )dictionary_splat_pattern )parameters (block (expression_statement (assignment (identifier_resource_attr_qry) identifier_resource_attr_qry (call (attribute (call (attribute (attribute (identifier_db) identifier_db (identifier_DBSession) identifier_DBSession )attribute (identifier_query) identifier_query )attribute (argument_list (identifier_ResourceAttr) identifier_ResourceAttr )argument_list )call (identifier_filter) identifier_filter )attribute (argument_list (comparison_operator (attribute (identifier_ResourceAttr) identifier_ResourceAttr (identifier_id) identifier_id )attribute (identifier_resource_attr_id) identifier_resource_attr_id )comparison_operator )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_resource_attr) identifier_resource_attr (call (attribute (identifier_resource_attr_qry) identifier_resource_attr_qry (identifier_first) identifier_first )attribute (argument_list )argument_list )call )assignment )expression_statement (if_statement (comparison_operator (identifier_resource_attr) identifier_resource_attr (None) None )comparison_operator (block (raise_statement (call (identifier_ResourceNotFoundError) identifier_ResourceNotFoundError (argument_list (string_"Resource attribute %s does not exist") string_"Resource attribute %s does not exist" (identifier_resource_attr_id) identifier_resource_attr_id )argument_list )call )raise_statement )block )if_statement (return_statement (identifier_resource_attr) identifier_resource_attr )return_statement )block )function_definition )module
Get a specific resource attribte, by ID If type_id is Gspecified, only return the resource attributes within the type.
(module (function_definition (function_name_bool_env) function_name_bool_env (parameters (identifier_key) identifier_key (default_parameter (identifier_default) identifier_default (False) False )default_parameter )parameters (block (try_statement (block (return_statement (comparison_operator (call (attribute (subscript (attribute (identifier_os) identifier_os (identifier_environ) identifier_environ )attribute (identifier_key) identifier_key )subscript (identifier_lower) identifier_lower )attribute (argument_list )argument_list )call (identifier_TRUE) identifier_TRUE )comparison_operator )return_statement )block (except_clause (identifier_KeyError) identifier_KeyError (block (return_statement (identifier_default) identifier_default )return_statement )block )except_clause )try_statement )block )function_definition )module
Parse an environment variable as a boolean switch `True` is returned if the variable value matches one of the following: - ``'1'`` - ``'y'`` - ``'yes'`` - ``'true'`` The match is case-insensitive (so ``'Yes'`` will match as `True`) Parameters ---------- key : `str` the name of the environment variable to find default : `bool` the default return value if the key is not found Returns ------- True if the environment variable matches as 'yes' or similar False otherwise Examples -------- >>> import os >>> from gwpy.utils.env import bool_env >>> os.environ['GWPY_VALUE'] = 'yes' >>> print(bool_env('GWPY_VALUE')) True >>> os.environ['GWPY_VALUE'] = 'something else' >>> print(bool_env('GWPY_VALUE')) False >>> print(bool_env('GWPY_VALUE2')) False
(module (function_definition (function_name_reana_ready) function_name_reana_ready (parameters )parameters (block (import_from_statement (dotted_name (identifier_reana_commons) identifier_reana_commons (identifier_config) identifier_config )dotted_name (dotted_name (identifier_REANA_READY_CONDITIONS) identifier_REANA_READY_CONDITIONS )dotted_name )import_from_statement (for_statement (pattern_list (identifier_module_name) identifier_module_name (identifier_condition_list) identifier_condition_list )pattern_list (call (attribute (identifier_REANA_READY_CONDITIONS) identifier_REANA_READY_CONDITIONS (identifier_items) identifier_items )attribute (argument_list )argument_list )call (block (for_statement (identifier_condition_name) identifier_condition_name (identifier_condition_list) identifier_condition_list (block (expression_statement (assignment (identifier_module) identifier_module (call (attribute (identifier_importlib) identifier_importlib (identifier_import_module) identifier_import_module )attribute (argument_list (identifier_module_name) identifier_module_name )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_condition_func) identifier_condition_func (call (identifier_getattr) identifier_getattr (argument_list (identifier_module) identifier_module (identifier_condition_name) identifier_condition_name )argument_list )call )assignment )expression_statement (if_statement (not_operator (call (identifier_condition_func) identifier_condition_func (argument_list )argument_list )call )not_operator (block (return_statement (False) False )return_statement )block )if_statement )block )for_statement )block )for_statement (return_statement (True) True )return_statement )block )function_definition )module
Check if reana can start new workflows.
(module (function_definition (function_name_pcc_pos) function_name_pcc_pos (parameters (identifier_self) identifier_self (identifier_row1) identifier_row1 (identifier_row2) identifier_row2 )parameters (block (expression_statement (assignment (identifier_mean1) identifier_mean1 (call (attribute (identifier_np) identifier_np (identifier_mean) identifier_mean )attribute (argument_list (identifier_row1) identifier_row1 )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_mean2) identifier_mean2 (call (attribute (identifier_np) identifier_np (identifier_mean) identifier_mean )attribute (argument_list (identifier_row2) identifier_row2 )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_a) identifier_a (integer_0) integer_0 )assignment )expression_statement (expression_statement (assignment (identifier_x) identifier_x (integer_0) integer_0 )assignment )expression_statement (expression_statement (assignment (identifier_y) identifier_y (integer_0) integer_0 )assignment )expression_statement (for_statement (pattern_list (identifier_n1) identifier_n1 (identifier_n2) identifier_n2 )pattern_list (call (identifier_zip) identifier_zip (argument_list (identifier_row1) identifier_row1 (identifier_row2) identifier_row2 )argument_list )call (block (expression_statement (augmented_assignment (identifier_a) identifier_a (binary_operator (parenthesized_expression (binary_operator (identifier_n1) identifier_n1 (identifier_mean1) identifier_mean1 )binary_operator )parenthesized_expression (parenthesized_expression (binary_operator (identifier_n2) identifier_n2 (identifier_mean2) identifier_mean2 )binary_operator )parenthesized_expression )binary_operator )augmented_assignment )expression_statement (expression_statement (augmented_assignment (identifier_x) identifier_x (binary_operator (parenthesized_expression (binary_operator (identifier_n1) identifier_n1 (identifier_mean1) identifier_mean1 )binary_operator )parenthesized_expression (integer_2) integer_2 )binary_operator )augmented_assignment )expression_statement (expression_statement (augmented_assignment (identifier_y) identifier_y (binary_operator (parenthesized_expression (binary_operator (identifier_n2) identifier_n2 (identifier_mean2) identifier_mean2 )binary_operator )parenthesized_expression (integer_2) integer_2 )binary_operator )augmented_assignment )expression_statement )block )for_statement (if_statement (comparison_operator (identifier_a) identifier_a (integer_0) integer_0 )comparison_operator (block (return_statement (integer_0) integer_0 )return_statement )block (else_clause (block (return_statement (binary_operator (identifier_a) identifier_a (call (identifier_sqrt) identifier_sqrt (argument_list (binary_operator (identifier_x) identifier_x (identifier_y) identifier_y )binary_operator )argument_list )call )binary_operator )return_statement )block )else_clause )if_statement )block )function_definition )module
Calculate the Pearson correlation coefficient of one position compared to another position. Returns ------- score : float Pearson correlation coefficient.
(module (function_definition (function_name__rndLetterTransform) function_name__rndLetterTransform (parameters (identifier_self) identifier_self (identifier_image) identifier_image )parameters (block (expression_statement (assignment (pattern_list (identifier_w) identifier_w (identifier_h) identifier_h )pattern_list (attribute (identifier_image) identifier_image (identifier_size) identifier_size )attribute )assignment )expression_statement (expression_statement (assignment (identifier_dx) identifier_dx (binary_operator (identifier_w) identifier_w (call (attribute (identifier_random) identifier_random (identifier_uniform) identifier_uniform )attribute (argument_list (float_0.2) float_0.2 (float_0.7) float_0.7 )argument_list )call )binary_operator )assignment )expression_statement (expression_statement (assignment (identifier_dy) identifier_dy (binary_operator (identifier_h) identifier_h (call (attribute (identifier_random) identifier_random (identifier_uniform) identifier_uniform )attribute (argument_list (float_0.2) float_0.2 (float_0.7) float_0.7 )argument_list )call )binary_operator )assignment )expression_statement (expression_statement (assignment (pattern_list (identifier_x1) identifier_x1 (identifier_y1) identifier_y1 )pattern_list (call (attribute (attribute (identifier_self) identifier_self (identifier___class__) identifier___class__ )attribute (identifier__rndPointDisposition) identifier__rndPointDisposition )attribute (argument_list (identifier_dx) identifier_dx (identifier_dy) identifier_dy )argument_list )call )assignment )expression_statement (expression_statement (assignment (pattern_list (identifier_x2) identifier_x2 (identifier_y2) identifier_y2 )pattern_list (call (attribute (attribute (identifier_self) identifier_self (identifier___class__) identifier___class__ )attribute (identifier__rndPointDisposition) identifier__rndPointDisposition )attribute (argument_list (identifier_dx) identifier_dx (identifier_dy) identifier_dy )argument_list )call )assignment )expression_statement (expression_statement (augmented_assignment (identifier_w) identifier_w (binary_operator (call (identifier_abs) identifier_abs (argument_list (identifier_x1) identifier_x1 )argument_list )call (call (identifier_abs) identifier_abs (argument_list (identifier_x2) identifier_x2 )argument_list )call )binary_operator )augmented_assignment )expression_statement (expression_statement (augmented_assignment (identifier_h) identifier_h (binary_operator (call (identifier_abs) identifier_abs (argument_list (identifier_x1) identifier_x1 )argument_list )call (call (identifier_abs) identifier_abs (argument_list (identifier_x2) identifier_x2 )argument_list )call )binary_operator )augmented_assignment )expression_statement (expression_statement (assignment (identifier_quad) identifier_quad (call (attribute (attribute (identifier_self) identifier_self (identifier___class__) identifier___class__ )attribute (identifier__quadPoints) identifier__quadPoints )attribute (argument_list (tuple (identifier_w) identifier_w (identifier_h) identifier_h )tuple (tuple (identifier_x1) identifier_x1 (identifier_y1) identifier_y1 )tuple (tuple (identifier_x2) identifier_x2 (identifier_y2) identifier_y2 )tuple )argument_list )call )assignment )expression_statement (return_statement (call (attribute (identifier_image) identifier_image (identifier_transform) identifier_transform )attribute (argument_list (attribute (identifier_image) identifier_image (identifier_size) identifier_size )attribute (attribute (identifier_Image) identifier_Image (identifier_QUAD) identifier_QUAD )attribute (keyword_argument (identifier_data) identifier_data (identifier_quad) identifier_quad )keyword_argument (keyword_argument (identifier_resample) identifier_resample (attribute (identifier_self) identifier_self (identifier_resample) identifier_resample )attribute )keyword_argument )argument_list )call )return_statement )block )function_definition )module
Randomly morph a single character.
(module (function_definition (function_name_build) function_name_build (parameters (identifier_self) identifier_self (default_parameter (identifier_ignore) identifier_ignore (None) None )default_parameter )parameters (block (expression_statement (call (attribute (identifier_self) identifier_self (identifier__prepare_workspace) identifier__prepare_workspace )attribute (argument_list )argument_list )call )expression_statement (expression_statement (call (attribute (identifier_self) identifier_self (identifier_install_dependencies) identifier_install_dependencies )attribute (argument_list )argument_list )call )expression_statement (expression_statement (call (attribute (identifier_self) identifier_self (identifier_package) identifier_package )attribute (argument_list (identifier_ignore) identifier_ignore )argument_list )call )expression_statement )block )function_definition )module
Calls all necessary methods to build the Lambda Package
(module (function_definition (function_name_parse) function_name_parse (parameters (identifier_self) identifier_self (identifier_string) identifier_string (default_parameter (identifier_strict) identifier_strict (True) True )default_parameter )parameters (block (if_statement (call (identifier_isinstance) identifier_isinstance (argument_list (identifier_string) identifier_string (identifier_bytes) identifier_bytes )argument_list )call (block (expression_statement (assignment (identifier_errors) identifier_errors (conditional_expression (string_'strict') string_'strict' (identifier_strict) identifier_strict (string_'replace') string_'replace' )conditional_expression )assignment )expression_statement (expression_statement (assignment (identifier_string) identifier_string (call (attribute (identifier_string) identifier_string (identifier_decode) identifier_decode )attribute (argument_list (attribute (identifier_self) identifier_self (identifier_encoding) identifier_encoding )attribute (keyword_argument (identifier_errors) identifier_errors (identifier_errors) identifier_errors )keyword_argument )argument_list )call )assignment )expression_statement )block )if_statement (if_statement (not_operator (attribute (identifier_self) identifier_self (identifier_raw) identifier_raw )attribute )not_operator (block (expression_statement (assignment (attribute (identifier_self) identifier_self (identifier_raw) identifier_raw )attribute (identifier_string) identifier_string )assignment )expression_statement )block (else_clause (block (expression_statement (augmented_assignment (attribute (identifier_self) identifier_self (identifier_raw) identifier_raw )attribute (identifier_string) identifier_string )augmented_assignment )expression_statement )block )else_clause )if_statement (expression_statement (assignment (identifier_lines) identifier_lines (call (attribute (call (identifier_unfold_lines) identifier_unfold_lines (argument_list (identifier_string) identifier_string )argument_list )call (identifier_splitlines) identifier_splitlines )attribute (argument_list )argument_list )call )assignment )expression_statement (for_statement (identifier_line) identifier_line (identifier_lines) identifier_lines (block (if_statement (identifier_line) identifier_line (block (if_statement (comparison_operator (string_':') string_':' (identifier_line) identifier_line )comparison_operator (block (if_statement (identifier_strict) identifier_strict (block (raise_statement (call (identifier_ValueError) identifier_ValueError (argument_list (string_'Field missing colon.') string_'Field missing colon.' )argument_list )call )raise_statement )block (else_clause (block (continue_statement )continue_statement )block )else_clause )if_statement )block )if_statement (expression_statement (assignment (pattern_list (identifier_name) identifier_name (identifier_value) identifier_value )pattern_list (call (attribute (identifier_line) identifier_line (identifier_split) identifier_split )attribute (argument_list (string_':') string_':' (integer_1) integer_1 )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_name) identifier_name (call (attribute (identifier_name) identifier_name (identifier_strip) identifier_strip )attribute (argument_list )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_value) identifier_value (call (attribute (identifier_value) identifier_value (identifier_strip) identifier_strip )attribute (argument_list )argument_list )call )assignment )expression_statement (expression_statement (call (attribute (identifier_self) identifier_self (identifier_add) identifier_add )attribute (argument_list (identifier_name) identifier_name (identifier_value) identifier_value )argument_list )call )expression_statement )block )if_statement )block )for_statement )block )function_definition )module
Parse the string or bytes. Args: strict (bool): If True, errors will not be ignored Raises: :class:`ValueError` if the record is malformed.
(module (function_definition (function_name_out_of_date) function_name_out_of_date (parameters (identifier_self) identifier_self )parameters (block (try_statement (block (expression_statement (assignment (identifier_latest_remote_sha) identifier_latest_remote_sha (attribute (subscript (call (attribute (identifier_self) identifier_self (identifier_pr_commits) identifier_pr_commits )attribute (argument_list (call (attribute (attribute (identifier_self) identifier_self (identifier_pull_request) identifier_pull_request )attribute (identifier_refresh) identifier_refresh )attribute (argument_list (True) True )argument_list )call )argument_list )call (unary_operator (integer_1) integer_1 )unary_operator )subscript (identifier_sha) identifier_sha )attribute )assignment )expression_statement (expression_statement (call (identifier_print) identifier_print (argument_list (call (attribute (string_"Latest remote sha: {}") string_"Latest remote sha: {}" (identifier_format) identifier_format )attribute (argument_list (identifier_latest_remote_sha) identifier_latest_remote_sha )argument_list )call )argument_list )call )expression_statement (try_statement (block (expression_statement (call (identifier_print) identifier_print (argument_list (call (attribute (string_"Ratelimit remaining: {}") string_"Ratelimit remaining: {}" (identifier_format) identifier_format )attribute (argument_list (attribute (attribute (identifier_self) identifier_self (identifier_github) identifier_github )attribute (identifier_ratelimit_remaining) identifier_ratelimit_remaining )attribute )argument_list )call )argument_list )call )expression_statement )block (except_clause (identifier_Exception) identifier_Exception (block (expression_statement (call (identifier_print) identifier_print (argument_list (string_"Failed to look up ratelimit remaining") string_"Failed to look up ratelimit remaining" )argument_list )call )expression_statement )block )except_clause )try_statement (return_statement (comparison_operator (attribute (identifier_self) identifier_self (identifier_last_sha) identifier_last_sha )attribute (identifier_latest_remote_sha) identifier_latest_remote_sha )comparison_operator )return_statement )block (except_clause (identifier_IndexError) identifier_IndexError (block (return_statement (False) False )return_statement )block )except_clause )try_statement )block )function_definition )module
Check if our local latest sha matches the remote latest sha
(module (function_definition (function_name_guess_python_env) function_name_guess_python_env (parameters )parameters (block (expression_statement (assignment (pattern_list (identifier_version) identifier_version (identifier_major) identifier_major (identifier_minor) identifier_minor )pattern_list (call (identifier_get_version_info) identifier_get_version_info (argument_list )argument_list )call )assignment )expression_statement (if_statement (comparison_operator (string_'PyPy') string_'PyPy' (identifier_version) identifier_version )comparison_operator (block (return_statement (conditional_expression (string_'pypy3') string_'pypy3' (comparison_operator (identifier_major) identifier_major (integer_3) integer_3 )comparison_operator (string_'pypy') string_'pypy' )conditional_expression )return_statement )block )if_statement (return_statement (call (attribute (string_'py{major}{minor}') string_'py{major}{minor}' (identifier_format) identifier_format )attribute (argument_list (keyword_argument (identifier_major) identifier_major (identifier_major) identifier_major )keyword_argument (keyword_argument (identifier_minor) identifier_minor (identifier_minor) identifier_minor )keyword_argument )argument_list )call )return_statement )block )function_definition )module
Guess the default python env to use.
(module (function_definition (function_name_metapolicy) function_name_metapolicy (parameters (identifier_request) identifier_request (identifier_permitted) identifier_permitted (default_parameter (identifier_domains) identifier_domains (None) None )default_parameter )parameters (block (if_statement (comparison_operator (identifier_domains) identifier_domains (None) None )comparison_operator (block (expression_statement (assignment (identifier_domains) identifier_domains (list )list )assignment )expression_statement )block )if_statement (expression_statement (assignment (identifier_policy) identifier_policy (call (attribute (identifier_policies) identifier_policies (identifier_Policy) identifier_Policy )attribute (argument_list (list_splat (identifier_domains) identifier_domains )list_splat )argument_list )call )assignment )expression_statement (expression_statement (call (attribute (identifier_policy) identifier_policy (identifier_metapolicy) identifier_metapolicy )attribute (argument_list (identifier_permitted) identifier_permitted )argument_list )call )expression_statement (return_statement (call (identifier_serve) identifier_serve (argument_list (identifier_request) identifier_request (identifier_policy) identifier_policy )argument_list )call )return_statement )block )function_definition )module
Serves a cross-domain policy which can allow other policies to exist on the same domain. Note that this view, if used, must be the master policy for the domain, and so must be served from the URL ``/crossdomain.xml`` on the domain: setting metapolicy information in other policy files is forbidden by the cross-domain policy specification. **Required arguments:** ``permitted`` A string indicating the extent to which other policies are permitted. A set of constants is available in ``flashpolicies.policies``, defining acceptable values for this argument. **Optional arguments:** ``domains`` A list of domains from which to allow access. Each value may be either a domain name (e.g., ``example.com``) or a wildcard (e.g., ``*.example.com``). Due to serious potential security issues, it is strongly recommended that you not use wildcard domain values.
(module (function_definition (function_name_solve) function_name_solve (parameters (typed_parameter (identifier_expected) identifier_expected (type (generic_type (identifier_List) identifier_List (type_parameter (type (generic_type (identifier_Tuple) identifier_Tuple (type_parameter (type (identifier_float) identifier_float )type (type (identifier_float) identifier_float )type )type_parameter )generic_type )type )type_parameter )generic_type )type )typed_parameter (typed_parameter (identifier_actual) identifier_actual (type (generic_type (identifier_List) identifier_List (type_parameter (type (generic_type (identifier_Tuple) identifier_Tuple (type_parameter (type (identifier_float) identifier_float )type (type (identifier_float) identifier_float )type )type_parameter )generic_type )type )type_parameter )generic_type )type )typed_parameter )parameters (type (attribute (identifier_np) identifier_np (identifier_ndarray) identifier_ndarray )attribute )type (block (expression_statement (assignment (identifier_ex) identifier_ex (call (attribute (call (attribute (identifier_np) identifier_np (identifier_array) identifier_array )attribute (argument_list (list_comprehension (binary_operator (call (identifier_list) identifier_list (argument_list (identifier_point) identifier_point )argument_list )call (list (integer_1) integer_1 )list )binary_operator (for_in_clause (identifier_point) identifier_point (identifier_expected) identifier_expected )for_in_clause )list_comprehension )argument_list )call (identifier_transpose) identifier_transpose )attribute (argument_list )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_ac) identifier_ac (call (attribute (call (attribute (identifier_np) identifier_np (identifier_array) identifier_array )attribute (argument_list (list_comprehension (binary_operator (call (identifier_list) identifier_list (argument_list (identifier_point) identifier_point )argument_list )call (list (integer_1) integer_1 )list )binary_operator (for_in_clause (identifier_point) identifier_point (identifier_actual) identifier_actual )for_in_clause )list_comprehension )argument_list )call (identifier_transpose) identifier_transpose )attribute (argument_list )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_transform) identifier_transform (call (attribute (identifier_np) identifier_np (identifier_dot) identifier_dot )attribute (argument_list (identifier_ac) identifier_ac (call (identifier_inv) identifier_inv (argument_list (identifier_ex) identifier_ex )argument_list )call )argument_list )call )assignment )expression_statement (return_statement (identifier_transform) identifier_transform )return_statement )block )function_definition )module
Takes two lists of 3 x-y points each, and calculates the matrix representing the transformation from one space to the other. The 3x3 matrix returned by this method represents the 2-D transformation matrix from the actual point to the expected point. Example: If the expected points are: [ (1, 1), (2, 2), (1, 2) ] And the actual measured points are: [ (1.1, 1.1), (2.1, 2.1), (1.1, 2.1) ] (in other words, a shift of exaxtly +0.1 in both x and y) Then the resulting transformation matrix T should be: [ 1 0 -0.1 ] [ 0 1 -0.1 ] [ 0 0 1 ] Then, if we take a 3x3 matrix B representing one of the measured points on the deck: [ 1 0 1.1 ] [ 0 1 2.1 ] [ 0 0 1 ] The B*T will yeild the "actual" point: [ 1 0 1 ] [ 0 1 2 ] [ 0 0 1 ] The return value of this function is the transformation matrix T
(module (function_definition (function_name_scan) function_name_scan (parameters (identifier_cls) identifier_cls (default_parameter (identifier_formats) identifier_formats (identifier_ALL_CODE_TYPES) identifier_ALL_CODE_TYPES )default_parameter (default_parameter (identifier_camera) identifier_camera (unary_operator (integer_1) integer_1 )unary_operator )default_parameter )parameters (block (expression_statement (assignment (identifier_app) identifier_app (call (attribute (identifier_AndroidApplication) identifier_AndroidApplication (identifier_instance) identifier_instance )attribute (argument_list )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_r) identifier_r (call (attribute (identifier_app) identifier_app (identifier_create_future) identifier_create_future )attribute (argument_list )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_pkg) identifier_pkg (call (attribute (identifier_BarcodePackage) identifier_BarcodePackage (identifier_instance) identifier_instance )attribute (argument_list )argument_list )call )assignment )expression_statement (expression_statement (call (attribute (identifier_pkg) identifier_pkg (identifier_setBarcodeResultListener) identifier_setBarcodeResultListener )attribute (argument_list (call (attribute (identifier_pkg) identifier_pkg (identifier_getId) identifier_getId )attribute (argument_list )argument_list )call )argument_list )call )expression_statement (expression_statement (call (attribute (attribute (identifier_pkg) identifier_pkg (identifier_onBarcodeResult) identifier_onBarcodeResult )attribute (identifier_connect) identifier_connect )attribute (argument_list (attribute (identifier_r) identifier_r (identifier_set_result) identifier_set_result )attribute )argument_list )call )expression_statement (expression_statement (assignment (identifier_intent) identifier_intent (call (identifier_cls) identifier_cls (argument_list (identifier_app) identifier_app )argument_list )call )assignment )expression_statement (if_statement (identifier_formats) identifier_formats (block (expression_statement (call (attribute (identifier_intent) identifier_intent (identifier_setDesiredBarcodeFormats) identifier_setDesiredBarcodeFormats )attribute (argument_list (identifier_formats) identifier_formats )argument_list )call )expression_statement )block )if_statement (if_statement (comparison_operator (identifier_camera) identifier_camera (unary_operator (integer_1) integer_1 )unary_operator )comparison_operator (block (expression_statement (call (attribute (identifier_intent) identifier_intent (identifier_setCameraId) identifier_setCameraId )attribute (argument_list (identifier_camera) identifier_camera )argument_list )call )expression_statement )block )if_statement (expression_statement (call (attribute (identifier_intent) identifier_intent (identifier_initiateScan) identifier_initiateScan )attribute (argument_list )argument_list )call )expression_statement (return_statement (identifier_r) identifier_r )return_statement )block )function_definition )module
Shortcut only one at a time will work...
(module (function_definition (function_name_list_voices) function_name_list_voices (parameters (identifier_self) identifier_self (default_parameter (identifier_language_code) identifier_language_code (None) None )default_parameter (default_parameter (identifier_retry) identifier_retry (attribute (attribute (attribute (attribute (identifier_google) identifier_google (identifier_api_core) identifier_api_core )attribute (identifier_gapic_v1) identifier_gapic_v1 )attribute (identifier_method) identifier_method )attribute (identifier_DEFAULT) identifier_DEFAULT )attribute )default_parameter (default_parameter (identifier_timeout) identifier_timeout (attribute (attribute (attribute (attribute (identifier_google) identifier_google (identifier_api_core) identifier_api_core )attribute (identifier_gapic_v1) identifier_gapic_v1 )attribute (identifier_method) identifier_method )attribute (identifier_DEFAULT) identifier_DEFAULT )attribute )default_parameter (default_parameter (identifier_metadata) identifier_metadata (None) None )default_parameter )parameters (block (if_statement (comparison_operator (string_"list_voices") string_"list_voices" (attribute (identifier_self) identifier_self (identifier__inner_api_calls) identifier__inner_api_calls )attribute )comparison_operator (block (expression_statement (assignment (subscript (attribute (identifier_self) identifier_self (identifier__inner_api_calls) identifier__inner_api_calls )attribute (string_"list_voices") string_"list_voices" )subscript (call (attribute (attribute (attribute (attribute (identifier_google) identifier_google (identifier_api_core) identifier_api_core )attribute (identifier_gapic_v1) identifier_gapic_v1 )attribute (identifier_method) identifier_method )attribute (identifier_wrap_method) identifier_wrap_method )attribute (argument_list (attribute (attribute (identifier_self) identifier_self (identifier_transport) identifier_transport )attribute (identifier_list_voices) identifier_list_voices )attribute (keyword_argument (identifier_default_retry) identifier_default_retry (attribute (subscript (attribute (identifier_self) identifier_self (identifier__method_configs) identifier__method_configs )attribute (string_"ListVoices") string_"ListVoices" )subscript (identifier_retry) identifier_retry )attribute )keyword_argument (keyword_argument (identifier_default_timeout) identifier_default_timeout (attribute (subscript (attribute (identifier_self) identifier_self (identifier__method_configs) identifier__method_configs )attribute (string_"ListVoices") string_"ListVoices" )subscript (identifier_timeout) identifier_timeout )attribute )keyword_argument (keyword_argument (identifier_client_info) identifier_client_info (attribute (identifier_self) identifier_self (identifier__client_info) identifier__client_info )attribute )keyword_argument )argument_list )call )assignment )expression_statement )block )if_statement (expression_statement (assignment (identifier_request) identifier_request (call (attribute (identifier_cloud_tts_pb2) identifier_cloud_tts_pb2 (identifier_ListVoicesRequest) identifier_ListVoicesRequest )attribute (argument_list (keyword_argument (identifier_language_code) identifier_language_code (identifier_language_code) identifier_language_code )keyword_argument )argument_list )call )assignment )expression_statement (return_statement (call (subscript (attribute (identifier_self) identifier_self (identifier__inner_api_calls) identifier__inner_api_calls )attribute (string_"list_voices") string_"list_voices" )subscript (argument_list (identifier_request) identifier_request (keyword_argument (identifier_retry) identifier_retry (identifier_retry) identifier_retry )keyword_argument (keyword_argument (identifier_timeout) identifier_timeout (identifier_timeout) identifier_timeout )keyword_argument (keyword_argument (identifier_metadata) identifier_metadata (identifier_metadata) identifier_metadata )keyword_argument )argument_list )call )return_statement )block )function_definition )module
Returns a list of ``Voice`` supported for synthesis. Example: >>> from google.cloud import texttospeech_v1beta1 >>> >>> client = texttospeech_v1beta1.TextToSpeechClient() >>> >>> response = client.list_voices() Args: language_code (str): Optional (but recommended) `BCP-47 <https://www.rfc-editor.org/rfc/bcp/bcp47.txt>`__ language tag. If specified, the ListVoices call will only return voices that can be used to synthesize this language\_code. E.g. when specifying "en-NZ", you will get supported "en-*" voices; when specifying "no", you will get supported "no-*" (Norwegian) and "nb-*" (Norwegian Bokmal) voices; specifying "zh" will also get supported "cmn-*" voices; specifying "zh-hk" will also get supported "yue-\*" voices. retry (Optional[google.api_core.retry.Retry]): A retry object used to retry requests. If ``None`` is specified, requests will not be retried. timeout (Optional[float]): The amount of time, in seconds, to wait for the request to complete. Note that if ``retry`` is specified, the timeout applies to each individual attempt. metadata (Optional[Sequence[Tuple[str, str]]]): Additional metadata that is provided to the method. Returns: A :class:`~google.cloud.texttospeech_v1beta1.types.ListVoicesResponse` instance. Raises: google.api_core.exceptions.GoogleAPICallError: If the request failed for any reason. google.api_core.exceptions.RetryError: If the request failed due to a retryable error and retry attempts failed. ValueError: If the parameters are invalid.
(module (function_definition (function_name_fill) function_name_fill (parameters (identifier_text) identifier_text (default_parameter (identifier_width) identifier_width (integer_70) integer_70 )default_parameter (dictionary_splat_pattern (identifier_kwargs) identifier_kwargs )dictionary_splat_pattern )parameters (block (expression_statement (assignment (identifier_w) identifier_w (call (identifier_ParagraphWrapper) identifier_ParagraphWrapper (argument_list (keyword_argument (identifier_width) identifier_width (identifier_width) identifier_width )keyword_argument (dictionary_splat (identifier_kwargs) identifier_kwargs )dictionary_splat )argument_list )call )assignment )expression_statement (return_statement (call (attribute (identifier_w) identifier_w (identifier_fill) identifier_fill )attribute (argument_list (identifier_text) identifier_text )argument_list )call )return_statement )block )function_definition )module
Fill multiple paragraphs of text, returning a new string. Reformat multiple paragraphs in 'text' to fit in lines of no more than 'width' columns, and return a new string containing the entire wrapped text. As with wrap(), tabs are expanded and other whitespace characters converted to space. See ParagraphWrapper class for available keyword args to customize wrapping behaviour.
(module (function_definition (function_name__ordered) function_name__ordered (parameters (identifier_generator) identifier_generator (list_splat_pattern (identifier_args) identifier_args )list_splat_pattern (dictionary_splat_pattern (identifier_kwargs) identifier_kwargs )dictionary_splat_pattern )parameters (block (expression_statement (assignment (identifier_unordered_dict) identifier_unordered_dict (dictionary_comprehension (pair (identifier_k) identifier_k (identifier_v) identifier_v )pair (for_in_clause (pattern_list (identifier_k) identifier_k (identifier_v) identifier_v )pattern_list (call (identifier_generator) identifier_generator (argument_list (list_splat (identifier_args) identifier_args )list_splat (dictionary_splat (identifier_kwargs) identifier_kwargs )dictionary_splat )argument_list )call )for_in_clause )dictionary_comprehension )assignment )expression_statement (expression_statement (assignment (identifier_keys) identifier_keys (call (identifier_sorted) identifier_sorted (argument_list (call (identifier_list) identifier_list (argument_list (call (attribute (call (identifier_dict) identifier_dict (argument_list (identifier_unordered_dict) identifier_unordered_dict )argument_list )call (identifier_keys) identifier_keys )attribute (argument_list )argument_list )call )argument_list )call )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_result) identifier_result (call (identifier_OrderedDict) identifier_OrderedDict (argument_list )argument_list )call )assignment )expression_statement (for_statement (identifier_key) identifier_key (identifier_keys) identifier_keys (block (expression_statement (assignment (subscript (identifier_result) identifier_result (identifier_key) identifier_key )subscript (subscript (identifier_unordered_dict) identifier_unordered_dict (identifier_key) identifier_key )subscript )assignment )expression_statement )block )for_statement (return_statement (identifier_result) identifier_result )return_statement )block )function_definition )module
Sort keys of unordered_dict and store in OrderedDict.
(module (function_definition (function_name_list) function_name_list (parameters (identifier_self) identifier_self )parameters (block (expression_statement (assignment (identifier_mask) identifier_mask (assignment (identifier_results) identifier_results (call (attribute (attribute (identifier_self) identifier_self (identifier_client) identifier_client )attribute (identifier_call) identifier_call )attribute (argument_list (string_'Account') string_'Account' (string_'getReservedCapacityGroups') string_'getReservedCapacityGroups' (keyword_argument (identifier_mask) identifier_mask (identifier_mask) identifier_mask )keyword_argument )argument_list )call )assignment )assignment )expression_statement (return_statement (identifier_results) identifier_results )return_statement )block )function_definition )module
List Reserved Capacities
(module (function_definition (function_name_get_version) function_name_get_version (parameters (identifier_self) identifier_self )parameters (block (expression_statement (assignment (identifier_raw_version) identifier_raw_version (call (identifier_run_cmd) identifier_run_cmd (argument_list (list (string_"podman") string_"podman" (string_"version") string_"version" )list (keyword_argument (identifier_return_output) identifier_return_output (True) True )keyword_argument )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_regex) identifier_regex (call (attribute (identifier_re) identifier_re (identifier_compile) identifier_compile )attribute (argument_list (string_r"Version:\s*(\d+)\.(\d+)\.(\d+)") string_r"Version:\s*(\d+)\.(\d+)\.(\d+)" )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_match) identifier_match (call (attribute (identifier_regex) identifier_regex (identifier_findall) identifier_findall )attribute (argument_list (identifier_raw_version) identifier_raw_version )argument_list )call )assignment )expression_statement (try_statement (block (return_statement (subscript (identifier_match) identifier_match (integer_0) integer_0 )subscript )return_statement )block (except_clause (identifier_IndexError) identifier_IndexError (block (expression_statement (call (attribute (identifier_logger) identifier_logger (identifier_error) identifier_error )attribute (argument_list (string_"unable to parse version from `podman version`") string_"unable to parse version from `podman version`" )argument_list )call )expression_statement (return_statement )return_statement )block )except_clause )try_statement )block )function_definition )module
return 3-tuple of version info or None :return: (str, str, str)
(module (function_definition (function_name_run) function_name_run (parameters )parameters (block (expression_statement (call (identifier_print) identifier_print (argument_list (binary_operator (string_'Python ') string_'Python ' (call (attribute (attribute (identifier_sys) identifier_sys (identifier_version) identifier_version )attribute (identifier_replace) identifier_replace )attribute (argument_list (string_'\n') string_'\n' (string_'') string_'' )argument_list )call )binary_operator )argument_list )call )expression_statement (try_statement (block (expression_statement (assignment (identifier_oscrypto_tests_module_info) identifier_oscrypto_tests_module_info (call (attribute (identifier_imp) identifier_imp (identifier_find_module) identifier_find_module )attribute (argument_list (string_'tests') string_'tests' (list (call (attribute (attribute (identifier_os) identifier_os (identifier_path) identifier_path )attribute (identifier_join) identifier_join )attribute (argument_list (identifier_build_root) identifier_build_root (string_'oscrypto') string_'oscrypto' )argument_list )call )list )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_oscrypto_tests) identifier_oscrypto_tests (call (attribute (identifier_imp) identifier_imp (identifier_load_module) identifier_load_module )attribute (argument_list (string_'oscrypto.tests') string_'oscrypto.tests' (list_splat (identifier_oscrypto_tests_module_info) identifier_oscrypto_tests_module_info )list_splat )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_oscrypto) identifier_oscrypto (call (attribute (identifier_oscrypto_tests) identifier_oscrypto_tests (identifier_local_oscrypto) identifier_local_oscrypto )attribute (argument_list )argument_list )call )assignment )expression_statement (expression_statement (call (identifier_print) identifier_print (argument_list (binary_operator (string_'\noscrypto backend: %s') string_'\noscrypto backend: %s' (call (attribute (identifier_oscrypto) identifier_oscrypto (identifier_backend) identifier_backend )attribute (argument_list )argument_list )call )binary_operator )argument_list )call )expression_statement )block (except_clause (parenthesized_expression (identifier_ImportError) identifier_ImportError )parenthesized_expression (block (pass_statement )pass_statement )block )except_clause )try_statement (if_statement (identifier_run_lint) identifier_run_lint (block (expression_statement (call (identifier_print) identifier_print (argument_list (string_'') string_'' )argument_list )call )expression_statement (expression_statement (assignment (identifier_lint_result) identifier_lint_result (call (identifier_run_lint) identifier_run_lint (argument_list )argument_list )call )assignment )expression_statement )block (else_clause (block (expression_statement (assignment (identifier_lint_result) identifier_lint_result (True) True )assignment )expression_statement )block )else_clause )if_statement (if_statement (identifier_run_coverage) identifier_run_coverage (block (expression_statement (call (identifier_print) identifier_print (argument_list (string_'\nRunning tests (via coverage.py)') string_'\nRunning tests (via coverage.py)' )argument_list )call )expression_statement (expression_statement (call (attribute (attribute (identifier_sys) identifier_sys (identifier_stdout) identifier_stdout )attribute (identifier_flush) identifier_flush )attribute (argument_list )argument_list )call )expression_statement (expression_statement (assignment (identifier_tests_result) identifier_tests_result (call (identifier_run_coverage) identifier_run_coverage (argument_list (keyword_argument (identifier_ci) identifier_ci (True) True )keyword_argument )argument_list )call )assignment )expression_statement )block (else_clause (block (expression_statement (call (identifier_print) identifier_print (argument_list (string_'\nRunning tests') string_'\nRunning tests' )argument_list )call )expression_statement (expression_statement (call (attribute (attribute (identifier_sys) identifier_sys (identifier_stdout) identifier_stdout )attribute (identifier_flush) identifier_flush )attribute (argument_list )argument_list )call )expression_statement (expression_statement (assignment (identifier_tests_result) identifier_tests_result (call (identifier_run_tests) identifier_run_tests (argument_list )argument_list )call )assignment )expression_statement )block )else_clause )if_statement (expression_statement (call (attribute (attribute (identifier_sys) identifier_sys (identifier_stdout) identifier_stdout )attribute (identifier_flush) identifier_flush )attribute (argument_list )argument_list )call )expression_statement (return_statement (boolean_operator (identifier_lint_result) identifier_lint_result (identifier_tests_result) identifier_tests_result )boolean_operator )return_statement )block )function_definition )module
Runs the linter and tests :return: A bool - if the linter and tests ran successfully
(module (function_definition (function_name_action_ipset) function_name_action_ipset (parameters (identifier_reader) identifier_reader (list_splat_pattern (identifier_args) identifier_args )list_splat_pattern )parameters (block (expression_statement (assignment (identifier_ip_set) identifier_ip_set (call (identifier_set) identifier_set (argument_list )argument_list )call )assignment )expression_statement (for_statement (identifier_record) identifier_record (identifier_reader) identifier_reader (block (if_statement (comparison_operator (attribute (identifier_record) identifier_record (identifier_log_status) identifier_log_status )attribute (tuple (identifier_SKIPDATA) identifier_SKIPDATA (identifier_NODATA) identifier_NODATA )tuple )comparison_operator (block (continue_statement )continue_statement )block )if_statement (expression_statement (call (attribute (identifier_ip_set) identifier_ip_set (identifier_add) identifier_add )attribute (argument_list (attribute (identifier_record) identifier_record (identifier_srcaddr) identifier_srcaddr )attribute )argument_list )call )expression_statement (expression_statement (call (attribute (identifier_ip_set) identifier_ip_set (identifier_add) identifier_add )attribute (argument_list (attribute (identifier_record) identifier_record (identifier_dstaddr) identifier_dstaddr )attribute )argument_list )call )expression_statement )block )for_statement (for_statement (identifier_ip) identifier_ip (identifier_ip_set) identifier_ip_set (block (expression_statement (call (identifier_print) identifier_print (argument_list (identifier_ip) identifier_ip )argument_list )call )expression_statement )block )for_statement )block )function_definition )module
Show the set of IPs seen in Flow Log records.
(module (function_definition (function_name_get_movielens) function_name_get_movielens (parameters (default_parameter (identifier_variant) identifier_variant (string_"20m") string_"20m" )default_parameter )parameters (block (expression_statement (assignment (identifier_filename) identifier_filename (binary_operator (string_"movielens_%s.hdf5") string_"movielens_%s.hdf5" (identifier_variant) identifier_variant )binary_operator )assignment )expression_statement (expression_statement (assignment (identifier_path) identifier_path (call (attribute (attribute (identifier_os) identifier_os (identifier_path) identifier_path )attribute (identifier_join) identifier_join )attribute (argument_list (attribute (identifier__download) identifier__download (identifier_LOCAL_CACHE_DIR) identifier_LOCAL_CACHE_DIR )attribute (identifier_filename) identifier_filename )argument_list )call )assignment )expression_statement (if_statement (not_operator (call (attribute (attribute (identifier_os) identifier_os (identifier_path) identifier_path )attribute (identifier_isfile) identifier_isfile )attribute (argument_list (identifier_path) identifier_path )argument_list )call )not_operator (block (expression_statement (call (attribute (identifier_log) identifier_log (identifier_info) identifier_info )attribute (argument_list (string_"Downloading dataset to '%s'") string_"Downloading dataset to '%s'" (identifier_path) identifier_path )argument_list )call )expression_statement (expression_statement (call (attribute (identifier__download) identifier__download (identifier_download_file) identifier_download_file )attribute (argument_list (binary_operator (identifier_URL_BASE) identifier_URL_BASE (identifier_filename) identifier_filename )binary_operator (identifier_path) identifier_path )argument_list )call )expression_statement )block (else_clause (block (expression_statement (call (attribute (identifier_log) identifier_log (identifier_info) identifier_info )attribute (argument_list (string_"Using cached dataset at '%s'") string_"Using cached dataset at '%s'" (identifier_path) identifier_path )argument_list )call )expression_statement )block )else_clause )if_statement (with_statement (with_clause (with_item (as_pattern (call (attribute (identifier_h5py) identifier_h5py (identifier_File) identifier_File )attribute (argument_list (identifier_path) identifier_path (string_'r') string_'r' )argument_list )call (as_pattern_target (identifier_f) identifier_f )as_pattern_target )as_pattern )with_item )with_clause (block (expression_statement (assignment (identifier_m) identifier_m (call (attribute (identifier_f) identifier_f (identifier_get) identifier_get )attribute (argument_list (string_'movie_user_ratings') string_'movie_user_ratings' )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_plays) identifier_plays (call (identifier_csr_matrix) identifier_csr_matrix (argument_list (tuple (call (attribute (identifier_m) identifier_m (identifier_get) identifier_get )attribute (argument_list (string_'data') string_'data' )argument_list )call (call (attribute (identifier_m) identifier_m (identifier_get) identifier_get )attribute (argument_list (string_'indices') string_'indices' )argument_list )call (call (attribute (identifier_m) identifier_m (identifier_get) identifier_get )attribute (argument_list (string_'indptr') string_'indptr' )argument_list )call )tuple )argument_list )call )assignment )expression_statement (return_statement (expression_list (call (attribute (identifier_np) identifier_np (identifier_array) identifier_array )attribute (argument_list (subscript (identifier_f) identifier_f (string_'movie') string_'movie' )subscript )argument_list )call (identifier_plays) identifier_plays )expression_list )return_statement )block )with_statement )block )function_definition )module
Gets movielens datasets Parameters --------- variant : string Which version of the movielens dataset to download. Should be one of '20m', '10m', '1m' or '100k'. Returns ------- movies : ndarray An array of the movie titles. ratings : csr_matrix A sparse matrix where the row is the movieId, the column is the userId and the value is the rating.
(module (function_definition (function_name__ilshift) function_name__ilshift (parameters (identifier_self) identifier_self (identifier_n) identifier_n )parameters (block (assert_statement (comparison_operator (integer_0) integer_0 (identifier_n) identifier_n (attribute (identifier_self) identifier_self (identifier_len) identifier_len )attribute )comparison_operator )assert_statement (expression_statement (call (attribute (identifier_self) identifier_self (identifier__append) identifier__append )attribute (argument_list (call (identifier_Bits) identifier_Bits (argument_list (identifier_n) identifier_n )argument_list )call )argument_list )call )expression_statement (expression_statement (call (attribute (identifier_self) identifier_self (identifier__truncatestart) identifier__truncatestart )attribute (argument_list (identifier_n) identifier_n )argument_list )call )expression_statement (return_statement (identifier_self) identifier_self )return_statement )block )function_definition )module
Shift bits by n to the left in place. Return self.
(module (function_definition (function_name_deliver) function_name_deliver (parameters (identifier_self) identifier_self (identifier_message) identifier_message )parameters (block (expression_statement (assignment (identifier_config) identifier_config (attribute (identifier_self) identifier_self (identifier_config) identifier_config )attribute )assignment )expression_statement (expression_statement (assignment (identifier_success) identifier_success (attribute (identifier_config) identifier_config (identifier_success) identifier_success )attribute )assignment )expression_statement (expression_statement (assignment (identifier_failure) identifier_failure (attribute (identifier_config) identifier_config (identifier_failure) identifier_failure )attribute )assignment )expression_statement (expression_statement (assignment (identifier_exhaustion) identifier_exhaustion (attribute (identifier_config) identifier_config (identifier_exhaustion) identifier_exhaustion )attribute )assignment )expression_statement (if_statement (call (identifier_getattr) identifier_getattr (argument_list (identifier_message) identifier_message (string_'die') string_'die' (False) False )argument_list )call (block (expression_statement (binary_operator (integer_1) integer_1 (integer_0) integer_0 )binary_operator )expression_statement )block )if_statement (if_statement (identifier_failure) identifier_failure (block (expression_statement (assignment (identifier_chance) identifier_chance (binary_operator (call (attribute (identifier_random) identifier_random (identifier_randint) identifier_randint )attribute (argument_list (integer_0) integer_0 (integer_100001) integer_100001 )argument_list )call (float_100000.0) float_100000.0 )binary_operator )assignment )expression_statement (if_statement (comparison_operator (identifier_chance) identifier_chance (identifier_failure) identifier_failure )comparison_operator (block (raise_statement (call (identifier_TransportFailedException) identifier_TransportFailedException (argument_list (string_"Mock failure.") string_"Mock failure." )argument_list )call )raise_statement )block )if_statement )block )if_statement (if_statement (identifier_exhaustion) identifier_exhaustion (block (expression_statement (assignment (identifier_chance) identifier_chance (binary_operator (call (attribute (identifier_random) identifier_random (identifier_randint) identifier_randint )attribute (argument_list (integer_0) integer_0 (integer_100001) integer_100001 )argument_list )call (float_100000.0) float_100000.0 )binary_operator )assignment )expression_statement (if_statement (comparison_operator (identifier_chance) identifier_chance (identifier_exhaustion) identifier_exhaustion )comparison_operator (block (raise_statement (call (identifier_TransportExhaustedException) identifier_TransportExhaustedException (argument_list (string_"Mock exhaustion.") string_"Mock exhaustion." )argument_list )call )raise_statement )block )if_statement )block )if_statement (if_statement (comparison_operator (identifier_success) identifier_success (float_1.0) float_1.0 )comparison_operator (block (return_statement (True) True )return_statement )block )if_statement (expression_statement (assignment (identifier_chance) identifier_chance (binary_operator (call (attribute (identifier_random) identifier_random (identifier_randint) identifier_randint )attribute (argument_list (integer_0) integer_0 (integer_100001) integer_100001 )argument_list )call (float_100000.0) float_100000.0 )binary_operator )assignment )expression_statement (if_statement (comparison_operator (identifier_chance) identifier_chance (identifier_success) identifier_success )comparison_operator (block (return_statement (True) True )return_statement )block )if_statement (return_statement (False) False )return_statement )block )function_definition )module
Concrete message delivery.
(module (function_definition (function_name_weld_vec_of_struct_to_struct_of_vec) function_name_weld_vec_of_struct_to_struct_of_vec (parameters (identifier_vec_of_structs) identifier_vec_of_structs (identifier_weld_types) identifier_weld_types )parameters (block (expression_statement (assignment (pattern_list (identifier_obj_id) identifier_obj_id (identifier_weld_obj) identifier_weld_obj )pattern_list (call (identifier_create_weld_object) identifier_create_weld_object (argument_list (identifier_vec_of_structs) identifier_vec_of_structs )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_appenders) identifier_appenders (call (identifier_struct_of) identifier_struct_of (argument_list (string_'appender[{e}]') string_'appender[{e}]' (identifier_weld_types) identifier_weld_types )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_types) identifier_types (call (identifier_struct_of) identifier_struct_of (argument_list (string_'{e}') string_'{e}' (identifier_weld_types) identifier_weld_types )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_merges) identifier_merges (call (identifier_struct_of) identifier_struct_of (argument_list (string_'merge(b.${i}, e.${i})') string_'merge(b.${i}, e.${i})' (identifier_weld_types) identifier_weld_types )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_result) identifier_result (call (identifier_struct_of) identifier_struct_of (argument_list (string_'result(vecs.${i})') string_'result(vecs.${i})' (identifier_weld_types) identifier_weld_types )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_weld_template) identifier_weld_template (assignment (attribute (identifier_weld_obj) identifier_weld_obj (identifier_weld_code) identifier_weld_code )attribute (call (attribute (identifier_weld_template) identifier_weld_template (identifier_format) identifier_format )attribute (argument_list (keyword_argument (identifier_vec_of_struct) identifier_vec_of_struct (identifier_obj_id) identifier_obj_id )keyword_argument (keyword_argument (identifier_appenders) identifier_appenders (identifier_appenders) identifier_appenders )keyword_argument (keyword_argument (identifier_types) identifier_types (identifier_types) identifier_types )keyword_argument (keyword_argument (identifier_merges) identifier_merges (identifier_merges) identifier_merges )keyword_argument (keyword_argument (identifier_result) identifier_result (identifier_result) identifier_result )keyword_argument )argument_list )call )assignment )assignment )expression_statement (return_statement (identifier_weld_obj) identifier_weld_obj )return_statement )block )function_definition )module
Create a struct of vectors. Parameters ---------- vec_of_structs : WeldObject Encoding a vector of structs. weld_types : list of WeldType The Weld types of the arrays in the same order. Returns ------- WeldObject Representation of this computation.
(module (function_definition (function_name_oq_server_context_processor) function_name_oq_server_context_processor (parameters (identifier_request) identifier_request )parameters (block (expression_statement (assignment (identifier_context) identifier_context (dictionary )dictionary )assignment )expression_statement (expression_statement (assignment (subscript (identifier_context) identifier_context (string_'oq_engine_server_url') string_'oq_engine_server_url' )subscript (parenthesized_expression (binary_operator (string_'//') string_'//' (call (attribute (attribute (identifier_request) identifier_request (identifier_META) identifier_META )attribute (identifier_get) identifier_get )attribute (argument_list (string_'HTTP_HOST') string_'HTTP_HOST' (string_'localhost:8800') string_'localhost:8800' )argument_list )call )binary_operator )parenthesized_expression )assignment )expression_statement (expression_statement (assignment (subscript (identifier_context) identifier_context (string_'oq_engine_version') string_'oq_engine_version' )subscript (identifier_oqversion) identifier_oqversion )assignment )expression_statement (expression_statement (assignment (subscript (identifier_context) identifier_context (string_'server_name') string_'server_name' )subscript (attribute (identifier_settings) identifier_settings (identifier_SERVER_NAME) identifier_SERVER_NAME )attribute )assignment )expression_statement (return_statement (identifier_context) identifier_context )return_statement )block )function_definition )module
A custom context processor which allows injection of additional context variables.
(module (function_definition (function_name_write_vaultlocker_conf) function_name_write_vaultlocker_conf (parameters (identifier_context) identifier_context (default_parameter (identifier_priority) identifier_priority (integer_100) integer_100 )default_parameter )parameters (block (expression_statement (assignment (identifier_charm_vl_path) identifier_charm_vl_path (call (attribute (string_"/var/lib/charm/{}/vaultlocker.conf") string_"/var/lib/charm/{}/vaultlocker.conf" (identifier_format) identifier_format )attribute (argument_list (call (attribute (identifier_hookenv) identifier_hookenv (identifier_service_name) identifier_service_name )attribute (argument_list )argument_list )call )argument_list )call )assignment )expression_statement (expression_statement (call (attribute (identifier_host) identifier_host (identifier_mkdir) identifier_mkdir )attribute (argument_list (call (attribute (attribute (identifier_os) identifier_os (identifier_path) identifier_path )attribute (identifier_dirname) identifier_dirname )attribute (argument_list (identifier_charm_vl_path) identifier_charm_vl_path )argument_list )call (keyword_argument (identifier_perms) identifier_perms (integer_0o700) integer_0o700 )keyword_argument )argument_list )call )expression_statement (expression_statement (call (attribute (identifier_templating) identifier_templating (identifier_render) identifier_render )attribute (argument_list (keyword_argument (identifier_source) identifier_source (string_'vaultlocker.conf.j2') string_'vaultlocker.conf.j2' )keyword_argument (keyword_argument (identifier_target) identifier_target (identifier_charm_vl_path) identifier_charm_vl_path )keyword_argument (keyword_argument (identifier_context) identifier_context (identifier_context) identifier_context )keyword_argument (keyword_argument (identifier_perms) identifier_perms (integer_0o600) integer_0o600 )keyword_argument )argument_list )call )expression_statement (expression_statement (call (attribute (identifier_alternatives) identifier_alternatives (identifier_install_alternative) identifier_install_alternative )attribute (argument_list (string_'vaultlocker.conf') string_'vaultlocker.conf' (string_'/etc/vaultlocker/vaultlocker.conf') string_'/etc/vaultlocker/vaultlocker.conf' (identifier_charm_vl_path) identifier_charm_vl_path (identifier_priority) identifier_priority )argument_list )call )expression_statement )block )function_definition )module
Write vaultlocker configuration to disk and install alternative :param context: Dict of data from vault-kv relation :ptype: context: dict :param priority: Priority of alternative configuration :ptype: priority: int
(module (function_definition (function_name__init_enrichment) function_name__init_enrichment (parameters (identifier_self) identifier_self )parameters (block (if_statement (attribute (identifier_self) identifier_self (identifier_study_n) identifier_study_n )attribute (block (return_statement (conditional_expression (string_'e') string_'e' (parenthesized_expression (comparison_operator (parenthesized_expression (binary_operator (binary_operator (float_1.0) float_1.0 (attribute (identifier_self) identifier_self (identifier_study_count) identifier_study_count )attribute )binary_operator (attribute (identifier_self) identifier_self (identifier_study_n) identifier_study_n )attribute )binary_operator )parenthesized_expression (parenthesized_expression (binary_operator (binary_operator (float_1.0) float_1.0 (attribute (identifier_self) identifier_self (identifier_pop_count) identifier_pop_count )attribute )binary_operator (attribute (identifier_self) identifier_self (identifier_pop_n) identifier_pop_n )attribute )binary_operator )parenthesized_expression )comparison_operator )parenthesized_expression (string_'p') string_'p' )conditional_expression )return_statement )block )if_statement (return_statement (string_'p') string_'p' )return_statement )block )function_definition )module
Mark as 'enriched' or 'purified'.
(module (function_definition (function_name_tolist) function_name_tolist (parameters (identifier_self) identifier_self )parameters (type (generic_type (identifier_List) identifier_List (type_parameter (type (identifier_bool) identifier_bool )type )type_parameter )generic_type )type (block (expression_statement (assignment (identifier_result) identifier_result (binary_operator (list (False) False )list (integer_64) integer_64 )binary_operator )assignment )expression_statement (for_statement (identifier_square) identifier_square (identifier_self) identifier_self (block (expression_statement (assignment (subscript (identifier_result) identifier_result (identifier_square) identifier_square )subscript (True) True )assignment )expression_statement )block )for_statement (return_statement (identifier_result) identifier_result )return_statement )block )function_definition )module
Convert the set to a list of 64 bools.
(module (function_definition (function_name_get_action_arguments) function_name_get_action_arguments (parameters (identifier_self) identifier_self (identifier_service_name) identifier_service_name (identifier_action_name) identifier_action_name )parameters (block (return_statement (attribute (subscript (attribute (subscript (attribute (identifier_self) identifier_self (identifier_services) identifier_services )attribute (identifier_service_name) identifier_service_name )subscript (identifier_actions) identifier_actions )attribute (identifier_action_name) identifier_action_name )subscript (identifier_info) identifier_info )attribute )return_statement )block )function_definition )module
Returns a list of tuples with all known arguments for the given service- and action-name combination. The tuples contain the argument-name, direction and data_type.
(module (function_definition (function_name_changes) function_name_changes (parameters (identifier_self) identifier_self )parameters (block (expression_statement (assignment (identifier_output) identifier_output (list )list )assignment )expression_statement (if_statement (comparison_operator (call (attribute (identifier_self) identifier_self (identifier_status) identifier_status )attribute (argument_list )argument_list )call (attribute (identifier_self) identifier_self (identifier_UNMODIFIED) identifier_UNMODIFIED )attribute )comparison_operator (block (expression_statement (assignment (identifier_output) identifier_output (list (binary_operator (attribute (identifier_self) identifier_self (identifier_formatter) identifier_formatter )attribute (tuple (string_' ') string_' ' (attribute (identifier_self) identifier_self (identifier_key) identifier_key )attribute (attribute (identifier_self) identifier_self (identifier_old_value) identifier_old_value )attribute )tuple )binary_operator )list )assignment )expression_statement )block (elif_clause (comparison_operator (call (attribute (identifier_self) identifier_self (identifier_status) identifier_status )attribute (argument_list )argument_list )call (attribute (identifier_self) identifier_self (identifier_ADDED) identifier_ADDED )attribute )comparison_operator (block (expression_statement (call (attribute (identifier_output) identifier_output (identifier_append) identifier_append )attribute (argument_list (binary_operator (attribute (identifier_self) identifier_self (identifier_formatter) identifier_formatter )attribute (tuple (string_'+') string_'+' (attribute (identifier_self) identifier_self (identifier_key) identifier_key )attribute (attribute (identifier_self) identifier_self (identifier_new_value) identifier_new_value )attribute )tuple )binary_operator )argument_list )call )expression_statement )block )elif_clause (elif_clause (comparison_operator (call (attribute (identifier_self) identifier_self (identifier_status) identifier_status )attribute (argument_list )argument_list )call (attribute (identifier_self) identifier_self (identifier_REMOVED) identifier_REMOVED )attribute )comparison_operator (block (expression_statement (call (attribute (identifier_output) identifier_output (identifier_append) identifier_append )attribute (argument_list (binary_operator (attribute (identifier_self) identifier_self (identifier_formatter) identifier_formatter )attribute (tuple (string_'-') string_'-' (attribute (identifier_self) identifier_self (identifier_key) identifier_key )attribute (attribute (identifier_self) identifier_self (identifier_old_value) identifier_old_value )attribute )tuple )binary_operator )argument_list )call )expression_statement )block )elif_clause (elif_clause (comparison_operator (call (attribute (identifier_self) identifier_self (identifier_status) identifier_status )attribute (argument_list )argument_list )call (attribute (identifier_self) identifier_self (identifier_MODIFIED) identifier_MODIFIED )attribute )comparison_operator (block (expression_statement (call (attribute (identifier_output) identifier_output (identifier_append) identifier_append )attribute (argument_list (binary_operator (attribute (identifier_self) identifier_self (identifier_formatter) identifier_formatter )attribute (tuple (string_'-') string_'-' (attribute (identifier_self) identifier_self (identifier_key) identifier_key )attribute (attribute (identifier_self) identifier_self (identifier_old_value) identifier_old_value )attribute )tuple )binary_operator )argument_list )call )expression_statement (expression_statement (call (attribute (identifier_output) identifier_output (identifier_append) identifier_append )attribute (argument_list (binary_operator (attribute (identifier_self) identifier_self (identifier_formatter) identifier_formatter )attribute (tuple (string_'+') string_'+' (attribute (identifier_self) identifier_self (identifier_key) identifier_key )attribute (attribute (identifier_self) identifier_self (identifier_new_value) identifier_new_value )attribute )tuple )binary_operator )argument_list )call )expression_statement )block )elif_clause )if_statement (return_statement (identifier_output) identifier_output )return_statement )block )function_definition )module
Returns a list of changes to represent the diff between old and new value. Returns: list: [string] representation of the change (if any) between old and new value
(module (function_definition (function_name_start) function_name_start (parameters (identifier_self) identifier_self (identifier_interval_s) identifier_interval_s )parameters (block (if_statement (attribute (identifier_self) identifier_self (identifier_running) identifier_running )attribute (block (return_statement (False) False )return_statement )block )if_statement (expression_statement (call (attribute (attribute (identifier_self) identifier_self (identifier_stopped) identifier_stopped )attribute (identifier_clear) identifier_clear )attribute (argument_list )argument_list )call )expression_statement (function_definition (function_name__execute) function_name__execute (parameters )parameters (block (if_statement (boolean_operator (not_operator (call (attribute (identifier_self) identifier_self (identifier_method) identifier_method )attribute (argument_list )argument_list )call )not_operator (attribute (identifier_self) identifier_self (identifier_stop_if_false) identifier_stop_if_false )attribute )boolean_operator (block (return_statement )return_statement )block )if_statement (while_statement (not_operator (call (attribute (attribute (identifier_self) identifier_self (identifier_stopped) identifier_stopped )attribute (identifier_wait) identifier_wait )attribute (argument_list (identifier_interval_s) identifier_interval_s )argument_list )call )not_operator (block (if_statement (boolean_operator (not_operator (call (attribute (identifier_self) identifier_self (identifier_method) identifier_method )attribute (argument_list )argument_list )call )not_operator (attribute (identifier_self) identifier_self (identifier_stop_if_false) identifier_stop_if_false )attribute )boolean_operator (block (return_statement )return_statement )block )if_statement )block )while_statement )block )function_definition (expression_statement (assignment (attribute (identifier_self) identifier_self (identifier_thread) identifier_thread )attribute (call (attribute (identifier_threading) identifier_threading (identifier_Thread) identifier_Thread )attribute (argument_list (keyword_argument (identifier_target) identifier_target (identifier__execute) identifier__execute )keyword_argument )argument_list )call )assignment )expression_statement (expression_statement (assignment (attribute (attribute (identifier_self) identifier_self (identifier_thread) identifier_thread )attribute (identifier_daemon) identifier_daemon )attribute (True) True )assignment )expression_statement (expression_statement (call (attribute (attribute (identifier_self) identifier_self (identifier_thread) identifier_thread )attribute (identifier_start) identifier_start )attribute (argument_list )argument_list )call )expression_statement (return_statement (True) True )return_statement )block )function_definition )module
Starts executing the method at the specified interval. Args: interval_s: The amount of time between executions of the method. Returns: False if the interval was already running.
(module (function_definition (function_name__onAs) function_name__onAs (parameters (identifier_self) identifier_self (identifier_name) identifier_name )parameters (block (expression_statement (string_" Memorizes an alias for an import or an imported item ") string_" Memorizes an alias for an import or an imported item " )expression_statement (if_statement (attribute (attribute (identifier_self) identifier_self (identifier___lastImport) identifier___lastImport )attribute (identifier_what) identifier_what )attribute (block (expression_statement (assignment (attribute (subscript (attribute (attribute (identifier_self) identifier_self (identifier___lastImport) identifier___lastImport )attribute (identifier_what) identifier_what )attribute (unary_operator (integer_1) integer_1 )unary_operator )subscript (identifier_alias) identifier_alias )attribute (identifier_name) identifier_name )assignment )expression_statement )block (else_clause (block (expression_statement (assignment (attribute (attribute (identifier_self) identifier_self (identifier___lastImport) identifier___lastImport )attribute (identifier_alias) identifier_alias )attribute (identifier_name) identifier_name )assignment )expression_statement )block )else_clause )if_statement (return_statement )return_statement )block )function_definition )module
Memorizes an alias for an import or an imported item
(module (function_definition (function_name_extract_largest) function_name_extract_largest (parameters (identifier_self) identifier_self (default_parameter (identifier_inplace) identifier_inplace (False) False )default_parameter )parameters (block (expression_statement (assignment (identifier_mesh) identifier_mesh (call (attribute (identifier_self) identifier_self (identifier_connectivity) identifier_connectivity )attribute (argument_list (keyword_argument (identifier_largest) identifier_largest (True) True )keyword_argument )argument_list )call )assignment )expression_statement (if_statement (identifier_inplace) identifier_inplace (block (expression_statement (call (attribute (identifier_self) identifier_self (identifier_overwrite) identifier_overwrite )attribute (argument_list (identifier_mesh) identifier_mesh )argument_list )call )expression_statement )block (else_clause (block (return_statement (identifier_mesh) identifier_mesh )return_statement )block )else_clause )if_statement )block )function_definition )module
Extract largest connected set in mesh. Can be used to reduce residues obtained when generating an isosurface. Works only if residues are not connected (share at least one point with) the main component of the image. Parameters ---------- inplace : bool, optional Updates mesh in-place while returning nothing. Returns ------- mesh : vtki.PolyData Largest connected set in mesh
(module (function_definition (function_name_dflt_sortby_ntgoea) function_name_dflt_sortby_ntgoea (parameters (identifier_ntgoea) identifier_ntgoea )parameters (block (return_statement (list (attribute (identifier_ntgoea) identifier_ntgoea (identifier_enrichment) identifier_enrichment )attribute (attribute (identifier_ntgoea) identifier_ntgoea (identifier_namespace) identifier_namespace )attribute (attribute (identifier_ntgoea) identifier_ntgoea (identifier_p_uncorrected) identifier_p_uncorrected )attribute (attribute (identifier_ntgoea) identifier_ntgoea (identifier_depth) identifier_depth )attribute (attribute (identifier_ntgoea) identifier_ntgoea (identifier_GO) identifier_GO )attribute )list )return_statement )block )function_definition )module
Default sorting of GOEA results stored in namedtuples.
(module (function_definition (function_name_close) function_name_close (parameters (identifier_self) identifier_self )parameters (block (expression_statement (assignment (attribute (identifier_self) identifier_self (identifier__closed) identifier__closed )attribute (True) True )assignment )expression_statement (if_statement (attribute (identifier_self) identifier_self (identifier_receive_task) identifier_receive_task )attribute (block (expression_statement (call (attribute (attribute (identifier_self) identifier_self (identifier_receive_task) identifier_receive_task )attribute (identifier_cancel) identifier_cancel )attribute (argument_list )argument_list )call )expression_statement )block )if_statement (if_statement (attribute (identifier_self) identifier_self (identifier_connection) identifier_connection )attribute (block (expression_statement (call (attribute (attribute (identifier_self) identifier_self (identifier_connection) identifier_connection )attribute (identifier_close) identifier_close )attribute (argument_list )argument_list )call )expression_statement )block )if_statement )block )function_definition )module
Close the underlying connection.
(module (function_definition (function_name_fit_predict) function_name_fit_predict (parameters (identifier_self) identifier_self (identifier_data) identifier_data (identifier_labels) identifier_labels (default_parameter (identifier_unkown) identifier_unkown (None) None )default_parameter )parameters (block (expression_statement (call (attribute (identifier_self) identifier_self (identifier_fit) identifier_fit )attribute (argument_list (identifier_data) identifier_data (identifier_labels) identifier_labels )argument_list )call )expression_statement (return_statement (call (attribute (identifier_self) identifier_self (identifier__predict_from_bmus) identifier__predict_from_bmus )attribute (argument_list (attribute (identifier_self) identifier_self (identifier__bmus) identifier__bmus )attribute (identifier_unkown) identifier_unkown )argument_list )call )return_statement )block )function_definition )module
\ Fit and classify data efficiently. :param data: sparse input matrix (ideal dtype is `numpy.float32`) :type data: :class:`scipy.sparse.csr_matrix` :param labels: the labels associated with data :type labels: iterable :param unkown: the label to attribute if no label is known :returns: the labels guessed for data :rtype: `numpy.array`
(module (function_definition (function_name_autoidlepc) function_name_autoidlepc (parameters (identifier_self) identifier_self (identifier_compute_id) identifier_compute_id (identifier_platform) identifier_platform (identifier_image) identifier_image (identifier_ram) identifier_ram )parameters (block (expression_statement (assignment (identifier_compute) identifier_compute (call (attribute (identifier_self) identifier_self (identifier_get_compute) identifier_get_compute )attribute (argument_list (identifier_compute_id) identifier_compute_id )argument_list )call )assignment )expression_statement (for_statement (identifier_project) identifier_project (call (identifier_list) identifier_list (argument_list (call (attribute (attribute (identifier_self) identifier_self (identifier__projects) identifier__projects )attribute (identifier_values) identifier_values )attribute (argument_list )argument_list )call )argument_list )call (block (if_statement (comparison_operator (attribute (identifier_project) identifier_project (identifier_name) identifier_name )attribute (string_"AUTOIDLEPC") string_"AUTOIDLEPC" )comparison_operator (block (expression_statement (yield (call (attribute (identifier_project) identifier_project (identifier_delete) identifier_delete )attribute (argument_list )argument_list )call )yield )expression_statement (expression_statement (call (attribute (identifier_self) identifier_self (identifier_remove_project) identifier_remove_project )attribute (argument_list (identifier_project) identifier_project )argument_list )call )expression_statement )block )if_statement )block )for_statement (expression_statement (assignment (identifier_project) identifier_project (yield (call (attribute (identifier_self) identifier_self (identifier_add_project) identifier_add_project )attribute (argument_list (keyword_argument (identifier_name) identifier_name (string_"AUTOIDLEPC") string_"AUTOIDLEPC" )keyword_argument )argument_list )call )yield )assignment )expression_statement (expression_statement (assignment (identifier_node) identifier_node (yield (call (attribute (identifier_project) identifier_project (identifier_add_node) identifier_add_node )attribute (argument_list (identifier_compute) identifier_compute (string_"AUTOIDLEPC") string_"AUTOIDLEPC" (call (identifier_str) identifier_str (argument_list (call (attribute (identifier_uuid) identifier_uuid (identifier_uuid4) identifier_uuid4 )attribute (argument_list )argument_list )call )argument_list )call (keyword_argument (identifier_node_type) identifier_node_type (string_"dynamips") string_"dynamips" )keyword_argument (keyword_argument (identifier_platform) identifier_platform (identifier_platform) identifier_platform )keyword_argument (keyword_argument (identifier_image) identifier_image (identifier_image) identifier_image )keyword_argument (keyword_argument (identifier_ram) identifier_ram (identifier_ram) identifier_ram )keyword_argument )argument_list )call )yield )assignment )expression_statement (expression_statement (assignment (identifier_res) identifier_res (yield (call (attribute (identifier_node) identifier_node (identifier_dynamips_auto_idlepc) identifier_dynamips_auto_idlepc )attribute (argument_list )argument_list )call )yield )assignment )expression_statement (expression_statement (yield (call (attribute (identifier_project) identifier_project (identifier_delete) identifier_delete )attribute (argument_list )argument_list )call )yield )expression_statement (expression_statement (call (attribute (identifier_self) identifier_self (identifier_remove_project) identifier_remove_project )attribute (argument_list (identifier_project) identifier_project )argument_list )call )expression_statement (return_statement (identifier_res) identifier_res )return_statement )block )function_definition )module
Compute and IDLE PC value for an image :param compute_id: ID of the compute where the idlepc operation need to run :param platform: Platform type :param image: Image to use :param ram: amount of RAM to use
(module (function_definition (function_name_beholder_ng) function_name_beholder_ng (parameters (identifier_func) identifier_func )parameters (block (decorated_definition (decorator (call (attribute (identifier_functools) identifier_functools (identifier_wraps) identifier_wraps )attribute (argument_list (identifier_func) identifier_func )argument_list )call )decorator (function_definition (function_name_behold) function_name_behold (parameters (identifier_file) identifier_file (identifier_length) identifier_length (list_splat_pattern (identifier_args) identifier_args )list_splat_pattern (dictionary_splat_pattern (identifier_kwargs) identifier_kwargs )dictionary_splat_pattern )parameters (block (expression_statement (assignment (identifier_seek_cur) identifier_seek_cur (call (attribute (identifier_file) identifier_file (identifier_tell) identifier_tell )attribute (argument_list )argument_list )call )assignment )expression_statement (try_statement (block (return_statement (call (identifier_func) identifier_func (argument_list (identifier_file) identifier_file (identifier_length) identifier_length (list_splat (identifier_args) identifier_args )list_splat (dictionary_splat (identifier_kwargs) identifier_kwargs )dictionary_splat )argument_list )call )return_statement )block (except_clause (identifier_Exception) identifier_Exception (block (import_from_statement (dotted_name (identifier_pcapkit) identifier_pcapkit (identifier_protocols) identifier_protocols (identifier_raw) identifier_raw )dotted_name (dotted_name (identifier_Raw) identifier_Raw )dotted_name )import_from_statement (expression_statement (assignment (identifier_error) identifier_error (subscript (call (attribute (call (attribute (call (attribute (identifier_traceback) identifier_traceback (identifier_format_exc) identifier_format_exc )attribute (argument_list (keyword_argument (identifier_limit) identifier_limit (integer_1) integer_1 )keyword_argument )argument_list )call (identifier_strip) identifier_strip )attribute (argument_list )argument_list )call (identifier_split) identifier_split )attribute (argument_list (attribute (identifier_os) identifier_os (identifier_linesep) identifier_linesep )attribute )argument_list )call (unary_operator (integer_1) integer_1 )unary_operator )subscript )assignment )expression_statement (expression_statement (call (attribute (identifier_file) identifier_file (identifier_seek) identifier_seek )attribute (argument_list (identifier_seek_cur) identifier_seek_cur (attribute (identifier_os) identifier_os (identifier_SEEK_SET) identifier_SEEK_SET )attribute )argument_list )call )expression_statement (expression_statement (assignment (identifier_next_) identifier_next_ (call (identifier_Raw) identifier_Raw (argument_list (identifier_file) identifier_file (identifier_length) identifier_length (keyword_argument (identifier_error) identifier_error (identifier_error) identifier_error )keyword_argument )argument_list )call )assignment )expression_statement (return_statement (identifier_next_) identifier_next_ )return_statement )block )except_clause )try_statement )block )function_definition )decorated_definition (return_statement (identifier_behold) identifier_behold )return_statement )block )function_definition )module
Behold analysis procedure.
(module (function_definition (function_name_hungarian) function_name_hungarian (parameters (identifier_A) identifier_A (identifier_B) identifier_B )parameters (block (expression_statement (assignment (identifier_distances) identifier_distances (call (identifier_cdist) identifier_cdist (argument_list (identifier_A) identifier_A (identifier_B) identifier_B (string_'euclidean') string_'euclidean' )argument_list )call )assignment )expression_statement (expression_statement (assignment (pattern_list (identifier_indices_a) identifier_indices_a (identifier_indices_b) identifier_indices_b )pattern_list (call (identifier_linear_sum_assignment) identifier_linear_sum_assignment (argument_list (identifier_distances) identifier_distances )argument_list )call )assignment )expression_statement (return_statement (identifier_indices_b) identifier_indices_b )return_statement )block )function_definition )module
Hungarian reordering. Assume A and B are coordinates for atoms of SAME type only
(module (function_definition (function_name_ensure_benchmark_data) function_name_ensure_benchmark_data (parameters (identifier_symbol) identifier_symbol (identifier_first_date) identifier_first_date (identifier_last_date) identifier_last_date (identifier_now) identifier_now (identifier_trading_day) identifier_trading_day (default_parameter (identifier_environ) identifier_environ (None) None )default_parameter )parameters (block (expression_statement (assignment (identifier_filename) identifier_filename (call (identifier_get_benchmark_filename) identifier_get_benchmark_filename (argument_list (identifier_symbol) identifier_symbol )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_data) identifier_data (call (identifier__load_cached_data) identifier__load_cached_data (argument_list (identifier_filename) identifier_filename (identifier_first_date) identifier_first_date (identifier_last_date) identifier_last_date (identifier_now) identifier_now (string_'benchmark') string_'benchmark' (identifier_environ) identifier_environ )argument_list )call )assignment )expression_statement (if_statement (comparison_operator (identifier_data) identifier_data (None) None )comparison_operator (block (return_statement (identifier_data) identifier_data )return_statement )block )if_statement (expression_statement (call (attribute (identifier_logger) identifier_logger (identifier_info) identifier_info )attribute (argument_list (parenthesized_expression (concatenated_string (string_'Downloading benchmark data for {symbol!r} ') string_'Downloading benchmark data for {symbol!r} ' (string_'from {first_date} to {last_date}') string_'from {first_date} to {last_date}' )concatenated_string )parenthesized_expression (keyword_argument (identifier_symbol) identifier_symbol (identifier_symbol) identifier_symbol )keyword_argument (keyword_argument (identifier_first_date) identifier_first_date (binary_operator (identifier_first_date) identifier_first_date (identifier_trading_day) identifier_trading_day )binary_operator )keyword_argument (keyword_argument (identifier_last_date) identifier_last_date (identifier_last_date) identifier_last_date )keyword_argument )argument_list )call )expression_statement (try_statement (block (expression_statement (assignment (identifier_data) identifier_data (call (identifier_get_benchmark_returns) identifier_get_benchmark_returns (argument_list (identifier_symbol) identifier_symbol )argument_list )call )assignment )expression_statement (expression_statement (call (attribute (identifier_data) identifier_data (identifier_to_csv) identifier_to_csv )attribute (argument_list (call (identifier_get_data_filepath) identifier_get_data_filepath (argument_list (identifier_filename) identifier_filename (identifier_environ) identifier_environ )argument_list )call )argument_list )call )expression_statement )block (except_clause (tuple (identifier_OSError) identifier_OSError (identifier_IOError) identifier_IOError (identifier_HTTPError) identifier_HTTPError )tuple (block (expression_statement (call (attribute (identifier_logger) identifier_logger (identifier_exception) identifier_exception )attribute (argument_list (string_'Failed to cache the new benchmark returns') string_'Failed to cache the new benchmark returns' )argument_list )call )expression_statement (raise_statement )raise_statement )block )except_clause )try_statement (if_statement (not_operator (call (identifier_has_data_for_dates) identifier_has_data_for_dates (argument_list (identifier_data) identifier_data (identifier_first_date) identifier_first_date (identifier_last_date) identifier_last_date )argument_list )call )not_operator (block (expression_statement (call (attribute (identifier_logger) identifier_logger (identifier_warn) identifier_warn )attribute (argument_list (parenthesized_expression (concatenated_string (string_"Still don't have expected benchmark data for {symbol!r} ") string_"Still don't have expected benchmark data for {symbol!r} " (string_"from {first_date} to {last_date} after redownload!") string_"from {first_date} to {last_date} after redownload!" )concatenated_string )parenthesized_expression (keyword_argument (identifier_symbol) identifier_symbol (identifier_symbol) identifier_symbol )keyword_argument (keyword_argument (identifier_first_date) identifier_first_date (binary_operator (identifier_first_date) identifier_first_date (identifier_trading_day) identifier_trading_day )binary_operator )keyword_argument (keyword_argument (identifier_last_date) identifier_last_date (identifier_last_date) identifier_last_date )keyword_argument )argument_list )call )expression_statement )block )if_statement (return_statement (identifier_data) identifier_data )return_statement )block )function_definition )module
Ensure we have benchmark data for `symbol` from `first_date` to `last_date` Parameters ---------- symbol : str The symbol for the benchmark to load. first_date : pd.Timestamp First required date for the cache. last_date : pd.Timestamp Last required date for the cache. now : pd.Timestamp The current time. This is used to prevent repeated attempts to re-download data that isn't available due to scheduling quirks or other failures. trading_day : pd.CustomBusinessDay A trading day delta. Used to find the day before first_date so we can get the close of the day prior to first_date. We attempt to download data unless we already have data stored at the data cache for `symbol` whose first entry is before or on `first_date` and whose last entry is on or after `last_date`. If we perform a download and the cache criteria are not satisfied, we wait at least one hour before attempting a redownload. This is determined by comparing the current time to the result of os.path.getmtime on the cache path.
(module (function_definition (function_name_add_chars) function_name_add_chars (parameters (identifier_self) identifier_self (identifier_chars) identifier_chars )parameters (block (expression_statement (string_'Add given chars to char set') string_'Add given chars to char set' )expression_statement (for_statement (identifier_c) identifier_c (identifier_chars) identifier_chars (block (if_statement (attribute (identifier_self) identifier_self (identifier__ignorecase) identifier__ignorecase )attribute (block (expression_statement (call (attribute (attribute (identifier_self) identifier_self (identifier__whitelist_chars) identifier__whitelist_chars )attribute (identifier_add) identifier_add )attribute (argument_list (call (attribute (identifier_c) identifier_c (identifier_lower) identifier_lower )attribute (argument_list )argument_list )call )argument_list )call )expression_statement (expression_statement (call (attribute (attribute (identifier_self) identifier_self (identifier__whitelist_chars) identifier__whitelist_chars )attribute (identifier_add) identifier_add )attribute (argument_list (call (attribute (identifier_c) identifier_c (identifier_upper) identifier_upper )attribute (argument_list )argument_list )call )argument_list )call )expression_statement )block (else_clause (block (expression_statement (call (attribute (attribute (identifier_self) identifier_self (identifier__whitelist_chars) identifier__whitelist_chars )attribute (identifier_add) identifier_add )attribute (argument_list (identifier_c) identifier_c )argument_list )call )expression_statement )block )else_clause )if_statement )block )for_statement )block )function_definition )module
Add given chars to char set
(module (function_definition (function_name_getidfkeyswithnodes) function_name_getidfkeyswithnodes (parameters )parameters (block (expression_statement (assignment (identifier_idf) identifier_idf (call (identifier_IDF) identifier_IDF (argument_list (call (identifier_StringIO) identifier_StringIO (argument_list (string_"") string_"" )argument_list )call )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_keys) identifier_keys (call (identifier_idfobjectkeys) identifier_idfobjectkeys (argument_list (identifier_idf) identifier_idf )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_keysfieldnames) identifier_keysfieldnames (generator_expression (tuple (identifier_key) identifier_key (attribute (call (attribute (identifier_idf) identifier_idf (identifier_newidfobject) identifier_newidfobject )attribute (argument_list (call (attribute (identifier_key) identifier_key (identifier_upper) identifier_upper )attribute (argument_list )argument_list )call )argument_list )call (identifier_fieldnames) identifier_fieldnames )attribute )tuple (for_in_clause (identifier_key) identifier_key (identifier_keys) identifier_keys )for_in_clause )generator_expression )assignment )expression_statement (expression_statement (assignment (identifier_keysnodefdnames) identifier_keysnodefdnames (generator_expression (tuple (identifier_key) identifier_key (generator_expression (identifier_name) identifier_name (for_in_clause (identifier_name) identifier_name (identifier_fdnames) identifier_fdnames )for_in_clause (if_clause (parenthesized_expression (call (attribute (identifier_name) identifier_name (identifier_endswith) identifier_endswith )attribute (argument_list (string_'Node_Name') string_'Node_Name' )argument_list )call )parenthesized_expression )if_clause )generator_expression )tuple (for_in_clause (pattern_list (identifier_key) identifier_key (identifier_fdnames) identifier_fdnames )pattern_list (identifier_keysfieldnames) identifier_keysfieldnames )for_in_clause )generator_expression )assignment )expression_statement (expression_statement (assignment (identifier_nodekeys) identifier_nodekeys (list_comprehension (identifier_key) identifier_key (for_in_clause (pattern_list (identifier_key) identifier_key (identifier_fdnames) identifier_fdnames )pattern_list (identifier_keysnodefdnames) identifier_keysnodefdnames )for_in_clause (if_clause (call (identifier_list) identifier_list (argument_list (identifier_fdnames) identifier_fdnames )argument_list )call )if_clause )list_comprehension )assignment )expression_statement (return_statement (identifier_nodekeys) identifier_nodekeys )return_statement )block )function_definition )module
return a list of keys of idfobjects that hve 'None Name' fields
(module (function_definition (function_name_update_lincs_proteins) function_name_update_lincs_proteins (parameters )parameters (block (expression_statement (assignment (identifier_url) identifier_url (string_'http://lincs.hms.harvard.edu/db/proteins/') string_'http://lincs.hms.harvard.edu/db/proteins/' )assignment )expression_statement (expression_statement (assignment (identifier_prot_data) identifier_prot_data (call (identifier_load_lincs_csv) identifier_load_lincs_csv (argument_list (identifier_url) identifier_url )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_prot_dict) identifier_prot_dict (dictionary_comprehension (pair (subscript (identifier_d) identifier_d (string_'HMS LINCS ID') string_'HMS LINCS ID' )subscript (call (attribute (identifier_d) identifier_d (identifier_copy) identifier_copy )attribute (argument_list )argument_list )call )pair (for_in_clause (identifier_d) identifier_d (identifier_prot_data) identifier_prot_data )for_in_clause )dictionary_comprehension )assignment )expression_statement (assert_statement (comparison_operator (call (identifier_len) identifier_len (argument_list (identifier_prot_dict) identifier_prot_dict )argument_list )call (call (identifier_len) identifier_len (argument_list (identifier_prot_data) identifier_prot_data )argument_list )call )comparison_operator (string_"We lost data.") string_"We lost data." )assert_statement (expression_statement (assignment (identifier_fname) identifier_fname (call (attribute (attribute (identifier_os) identifier_os (identifier_path) identifier_path )attribute (identifier_join) identifier_join )attribute (argument_list (identifier_path) identifier_path (string_'lincs_proteins.json') string_'lincs_proteins.json' )argument_list )call )assignment )expression_statement (with_statement (with_clause (with_item (as_pattern (call (identifier_open) identifier_open (argument_list (identifier_fname) identifier_fname (string_'w') string_'w' )argument_list )call (as_pattern_target (identifier_fh) identifier_fh )as_pattern_target )as_pattern )with_item )with_clause (block (expression_statement (call (attribute (identifier_json) identifier_json (identifier_dump) identifier_dump )attribute (argument_list (identifier_prot_dict) identifier_prot_dict (identifier_fh) identifier_fh (keyword_argument (identifier_indent) identifier_indent (integer_1) integer_1 )keyword_argument )argument_list )call )expression_statement )block )with_statement )block )function_definition )module
Load the csv of LINCS protein metadata into a dict. Produces a dict keyed by HMS LINCS protein ids, with the metadata contained in a dict of row values keyed by the column headers extracted from the csv.
(module (function_definition (function_name__delly_exclude_file) function_name__delly_exclude_file (parameters (identifier_items) identifier_items (identifier_base_file) identifier_base_file (identifier_chrom) identifier_chrom )parameters (block (expression_statement (assignment (identifier_base_exclude) identifier_base_exclude (call (attribute (identifier_sshared) identifier_sshared (identifier_prepare_exclude_file) identifier_prepare_exclude_file )attribute (argument_list (identifier_items) identifier_items (identifier_base_file) identifier_base_file (identifier_chrom) identifier_chrom )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_out_file) identifier_out_file (binary_operator (string_"%s-delly%s") string_"%s-delly%s" (call (attribute (identifier_utils) identifier_utils (identifier_splitext_plus) identifier_splitext_plus )attribute (argument_list (identifier_base_exclude) identifier_base_exclude )argument_list )call )binary_operator )assignment )expression_statement (with_statement (with_clause (with_item (as_pattern (call (identifier_file_transaction) identifier_file_transaction (argument_list (subscript (identifier_items) identifier_items (integer_0) integer_0 )subscript (identifier_out_file) identifier_out_file )argument_list )call (as_pattern_target (identifier_tx_out_file) identifier_tx_out_file )as_pattern_target )as_pattern )with_item )with_clause (block (with_statement (with_clause (with_item (as_pattern (call (identifier_open) identifier_open (argument_list (identifier_tx_out_file) identifier_tx_out_file (string_"w") string_"w" )argument_list )call (as_pattern_target (identifier_out_handle) identifier_out_handle )as_pattern_target )as_pattern )with_item )with_clause (block (with_statement (with_clause (with_item (as_pattern (call (identifier_open) identifier_open (argument_list (identifier_base_exclude) identifier_base_exclude )argument_list )call (as_pattern_target (identifier_in_handle) identifier_in_handle )as_pattern_target )as_pattern )with_item )with_clause (block (for_statement (identifier_line) identifier_line (identifier_in_handle) identifier_in_handle (block (expression_statement (assignment (identifier_parts) identifier_parts (call (attribute (identifier_line) identifier_line (identifier_split) identifier_split )attribute (argument_list (string_"\t") string_"\t" )argument_list )call )assignment )expression_statement (if_statement (comparison_operator (subscript (identifier_parts) identifier_parts (integer_0) integer_0 )subscript (identifier_chrom) identifier_chrom )comparison_operator (block (expression_statement (call (attribute (identifier_out_handle) identifier_out_handle (identifier_write) identifier_write )attribute (argument_list (identifier_line) identifier_line )argument_list )call )expression_statement )block (else_clause (block (expression_statement (call (attribute (identifier_out_handle) identifier_out_handle (identifier_write) identifier_write )attribute (argument_list (binary_operator (string_"%s\n") string_"%s\n" (subscript (identifier_parts) identifier_parts (integer_0) integer_0 )subscript )binary_operator )argument_list )call )expression_statement )block )else_clause )if_statement )block )for_statement )block )with_statement )block )with_statement )block )with_statement (return_statement (identifier_out_file) identifier_out_file )return_statement )block )function_definition )module
Prepare a delly-specific exclude file eliminating chromosomes. Delly wants excluded chromosomes listed as just the chromosome, with no coordinates.
(module (function_definition (function_name__get_regions) function_name__get_regions (parameters (identifier_self) identifier_self )parameters (block (if_statement (comparison_operator (subscript (attribute (identifier_self) identifier_self (identifier__specs_in) identifier__specs_in )attribute (identifier__REGIONS_STR) identifier__REGIONS_STR )subscript (string_'all') string_'all' )comparison_operator (block (return_statement (list (call (identifier__get_all_objs_of_type) identifier__get_all_objs_of_type (argument_list (identifier_Region) identifier_Region (call (identifier_getattr) identifier_getattr (argument_list (attribute (identifier_self) identifier_self (identifier__obj_lib) identifier__obj_lib )attribute (string_'regions') string_'regions' (attribute (identifier_self) identifier_self (identifier__obj_lib) identifier__obj_lib )attribute )argument_list )call )argument_list )call )list )return_statement )block (else_clause (block (return_statement (list (call (identifier_set) identifier_set (argument_list (subscript (attribute (identifier_self) identifier_self (identifier__specs_in) identifier__specs_in )attribute (identifier__REGIONS_STR) identifier__REGIONS_STR )subscript )argument_list )call )list )return_statement )block )else_clause )if_statement )block )function_definition )module
Get the requested regions.
(module (function_definition (function_name_slanted_triangular) function_name_slanted_triangular (parameters (identifier_max_rate) identifier_max_rate (identifier_num_steps) identifier_num_steps (default_parameter (identifier_cut_frac) identifier_cut_frac (float_0.1) float_0.1 )default_parameter (default_parameter (identifier_ratio) identifier_ratio (integer_32) integer_32 )default_parameter (default_parameter (identifier_decay) identifier_decay (integer_1) integer_1 )default_parameter (default_parameter (identifier_t) identifier_t (float_0.0) float_0.0 )default_parameter )parameters (block (expression_statement (assignment (identifier_cut) identifier_cut (call (identifier_int) identifier_int (argument_list (binary_operator (identifier_num_steps) identifier_num_steps (identifier_cut_frac) identifier_cut_frac )binary_operator )argument_list )call )assignment )expression_statement (while_statement (True) True (block (expression_statement (augmented_assignment (identifier_t) identifier_t (integer_1) integer_1 )augmented_assignment )expression_statement (if_statement (comparison_operator (identifier_t) identifier_t (identifier_cut) identifier_cut )comparison_operator (block (expression_statement (assignment (identifier_p) identifier_p (binary_operator (identifier_t) identifier_t (identifier_cut) identifier_cut )binary_operator )assignment )expression_statement )block (else_clause (block (expression_statement (assignment (identifier_p) identifier_p (binary_operator (integer_1) integer_1 (parenthesized_expression (binary_operator (parenthesized_expression (binary_operator (identifier_t) identifier_t (identifier_cut) identifier_cut )binary_operator )parenthesized_expression (parenthesized_expression (binary_operator (identifier_cut) identifier_cut (parenthesized_expression (binary_operator (binary_operator (integer_1) integer_1 (identifier_cut_frac) identifier_cut_frac )binary_operator (integer_1) integer_1 )binary_operator )parenthesized_expression )binary_operator )parenthesized_expression )binary_operator )parenthesized_expression )binary_operator )assignment )expression_statement )block )else_clause )if_statement (expression_statement (assignment (identifier_learn_rate) identifier_learn_rate (binary_operator (binary_operator (identifier_max_rate) identifier_max_rate (parenthesized_expression (binary_operator (integer_1) integer_1 (binary_operator (identifier_p) identifier_p (parenthesized_expression (binary_operator (identifier_ratio) identifier_ratio (integer_1) integer_1 )binary_operator )parenthesized_expression )binary_operator )binary_operator )parenthesized_expression )binary_operator (parenthesized_expression (binary_operator (integer_1) integer_1 (identifier_ratio) identifier_ratio )binary_operator )parenthesized_expression )binary_operator )assignment )expression_statement (expression_statement (yield (identifier_learn_rate) identifier_learn_rate )yield )expression_statement )block )while_statement )block )function_definition )module
Yield an infinite series of values according to Howard and Ruder's "slanted triangular learning rate" schedule.
(module (function_definition (function_name_loadDict) function_name_loadDict (parameters (identifier_filename) identifier_filename )parameters (block (expression_statement (assignment (identifier_filename) identifier_filename (call (attribute (attribute (identifier_os) identifier_os (identifier_path) identifier_path )attribute (identifier_expanduser) identifier_expanduser )attribute (argument_list (identifier_filename) identifier_filename )argument_list )call )assignment )expression_statement (if_statement (not_operator (subscript (call (identifier_splitext) identifier_splitext (argument_list (identifier_filename) identifier_filename )argument_list )call (integer_1) integer_1 )subscript )not_operator (block (expression_statement (augmented_assignment (identifier_filename) identifier_filename (string_".bpickle") string_".bpickle" )augmented_assignment )expression_statement )block )if_statement (expression_statement (assignment (identifier_f) identifier_f (None) None )assignment )expression_statement (try_statement (block (expression_statement (assignment (identifier_f) identifier_f (call (identifier_open) identifier_open (argument_list (identifier_filename) identifier_filename (string_"rb") string_"rb" )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_varH) identifier_varH (call (attribute (identifier_cPickle) identifier_cPickle (identifier_load) identifier_load )attribute (argument_list (identifier_f) identifier_f )argument_list )call )assignment )expression_statement )block (finally_clause (block (if_statement (identifier_f) identifier_f (block (expression_statement (call (attribute (identifier_f) identifier_f (identifier_close) identifier_close )attribute (argument_list )argument_list )call )expression_statement )block )if_statement )block )finally_clause )try_statement (return_statement (identifier_varH) identifier_varH )return_statement )block )function_definition )module
Return the variables pickled pickled into `filename` with `saveVars` as a dict.
(module (function_definition (function_name_movies_box_office) function_name_movies_box_office (parameters (identifier_self) identifier_self (dictionary_splat_pattern (identifier_kwargs) identifier_kwargs )dictionary_splat_pattern )parameters (block (expression_statement (assignment (identifier_path) identifier_path (call (attribute (identifier_self) identifier_self (identifier__get_path) identifier__get_path )attribute (argument_list (string_'movies_box_office') string_'movies_box_office' )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_response) identifier_response (call (attribute (identifier_self) identifier_self (identifier__GET) identifier__GET )attribute (argument_list (identifier_path) identifier_path (identifier_kwargs) identifier_kwargs )argument_list )call )assignment )expression_statement (expression_statement (call (attribute (identifier_self) identifier_self (identifier__set_attrs_to_values) identifier__set_attrs_to_values )attribute (argument_list (identifier_response) identifier_response )argument_list )call )expression_statement (return_statement (identifier_response) identifier_response )return_statement )block )function_definition )module
Gets the top box office earning movies from the API. Sorted by most recent weekend gross ticket sales. Args: limit (optional): limits the number of movies returned, default=10 country (optional): localized data for selected country, default="us" Returns: A dict respresentation of the JSON returned from the API.
(module (function_definition (function_name_eradicate_pgroup) function_name_eradicate_pgroup (parameters (identifier_self) identifier_self (identifier_pgroup) identifier_pgroup (dictionary_splat_pattern (identifier_kwargs) identifier_kwargs )dictionary_splat_pattern )parameters (block (expression_statement (assignment (identifier_eradicate) identifier_eradicate (dictionary (pair (string_"eradicate") string_"eradicate" (True) True )pair )dictionary )assignment )expression_statement (expression_statement (call (attribute (identifier_eradicate) identifier_eradicate (identifier_update) identifier_update )attribute (argument_list (identifier_kwargs) identifier_kwargs )argument_list )call )expression_statement (return_statement (call (attribute (identifier_self) identifier_self (identifier__request) identifier__request )attribute (argument_list (string_"DELETE") string_"DELETE" (call (attribute (string_"pgroup/{0}") string_"pgroup/{0}" (identifier_format) identifier_format )attribute (argument_list (identifier_pgroup) identifier_pgroup )argument_list )call (identifier_eradicate) identifier_eradicate )argument_list )call )return_statement )block )function_definition )module
Eradicate a destroyed pgroup. :param pgroup: Name of pgroup to be eradicated. :type pgroup: str :param \*\*kwargs: See the REST API Guide on your array for the documentation on the request: **DELETE pgroup/:pgroup** :type \*\*kwargs: optional :returns: A dictionary mapping "name" to pgroup. :rtype: ResponseDict .. note:: Requires use of REST API 1.2 or later.
(module (function_definition (function_name_run) function_name_run (parameters (identifier_self) identifier_self (default_parameter (identifier_instream) identifier_instream (attribute (identifier_sys) identifier_sys (identifier_stdin) identifier_stdin )attribute )default_parameter )parameters (block (expression_statement (call (attribute (attribute (identifier_sys) identifier_sys (identifier_stdout) identifier_stdout )attribute (identifier_write) identifier_write )attribute (argument_list (attribute (identifier_self) identifier_self (identifier_prompt) identifier_prompt )attribute )argument_list )call )expression_statement (expression_statement (call (attribute (attribute (identifier_sys) identifier_sys (identifier_stdout) identifier_stdout )attribute (identifier_flush) identifier_flush )attribute (argument_list )argument_list )call )expression_statement (while_statement (True) True (block (expression_statement (assignment (identifier_line) identifier_line (call (attribute (identifier_instream) identifier_instream (identifier_readline) identifier_readline )attribute (argument_list )argument_list )call )assignment )expression_statement (try_statement (block (expression_statement (call (attribute (identifier_self) identifier_self (identifier_exec_cmd) identifier_exec_cmd )attribute (argument_list (identifier_line) identifier_line )argument_list )call )expression_statement )block (except_clause (as_pattern (identifier_Exception) identifier_Exception (as_pattern_target (identifier_e) identifier_e )as_pattern_target )as_pattern (block (expression_statement (call (attribute (identifier_self) identifier_self (identifier_errfun) identifier_errfun )attribute (argument_list (identifier_e) identifier_e )argument_list )call )expression_statement )block )except_clause )try_statement (expression_statement (call (attribute (attribute (identifier_sys) identifier_sys (identifier_stdout) identifier_stdout )attribute (identifier_write) identifier_write )attribute (argument_list (attribute (identifier_self) identifier_self (identifier_prompt) identifier_prompt )attribute )argument_list )call )expression_statement (expression_statement (call (attribute (attribute (identifier_sys) identifier_sys (identifier_stdout) identifier_stdout )attribute (identifier_flush) identifier_flush )attribute (argument_list )argument_list )call )expression_statement )block )while_statement )block )function_definition )module
Runs the CLI, reading from sys.stdin by default
(module (function_definition (function_name_node_to_complex_fault_geometry) function_name_node_to_complex_fault_geometry (parameters (identifier_node) identifier_node )parameters (block (assert_statement (comparison_operator (string_"complexFaultGeometry") string_"complexFaultGeometry" (attribute (identifier_node) identifier_node (identifier_tag) identifier_tag )attribute )comparison_operator )assert_statement (expression_statement (assignment (identifier_intermediate_edges) identifier_intermediate_edges (list )list )assignment )expression_statement (for_statement (identifier_subnode) identifier_subnode (attribute (identifier_node) identifier_node (identifier_nodes) identifier_nodes )attribute (block (if_statement (comparison_operator (string_"faultTopEdge") string_"faultTopEdge" (attribute (identifier_subnode) identifier_subnode (identifier_tag) identifier_tag )attribute )comparison_operator (block (expression_statement (assignment (identifier_top_edge) identifier_top_edge (call (identifier_linestring_node_to_line) identifier_linestring_node_to_line (argument_list (subscript (attribute (identifier_subnode) identifier_subnode (identifier_nodes) identifier_nodes )attribute (integer_0) integer_0 )subscript (keyword_argument (identifier_with_depth) identifier_with_depth (True) True )keyword_argument )argument_list )call )assignment )expression_statement )block (elif_clause (comparison_operator (string_"intermediateEdge") string_"intermediateEdge" (attribute (identifier_subnode) identifier_subnode (identifier_tag) identifier_tag )attribute )comparison_operator (block (expression_statement (assignment (identifier_int_edge) identifier_int_edge (call (identifier_linestring_node_to_line) identifier_linestring_node_to_line (argument_list (subscript (attribute (identifier_subnode) identifier_subnode (identifier_nodes) identifier_nodes )attribute (integer_0) integer_0 )subscript (keyword_argument (identifier_with_depth) identifier_with_depth (True) True )keyword_argument )argument_list )call )assignment )expression_statement (expression_statement (call (attribute (identifier_intermediate_edges) identifier_intermediate_edges (identifier_append) identifier_append )attribute (argument_list (identifier_int_edge) identifier_int_edge )argument_list )call )expression_statement )block )elif_clause (elif_clause (comparison_operator (string_"faultBottomEdge") string_"faultBottomEdge" (attribute (identifier_subnode) identifier_subnode (identifier_tag) identifier_tag )attribute )comparison_operator (block (expression_statement (assignment (identifier_bottom_edge) identifier_bottom_edge (call (identifier_linestring_node_to_line) identifier_linestring_node_to_line (argument_list (subscript (attribute (identifier_subnode) identifier_subnode (identifier_nodes) identifier_nodes )attribute (integer_0) integer_0 )subscript (keyword_argument (identifier_with_depth) identifier_with_depth (True) True )keyword_argument )argument_list )call )assignment )expression_statement )block )elif_clause (else_clause (block (pass_statement )pass_statement )block )else_clause )if_statement )block )for_statement (return_statement (binary_operator (binary_operator (list (identifier_top_edge) identifier_top_edge )list (identifier_intermediate_edges) identifier_intermediate_edges )binary_operator (list (identifier_bottom_edge) identifier_bottom_edge )list )binary_operator )return_statement )block )function_definition )module
Reads a complex fault geometry node and returns an
(module (function_definition (function_name_format) function_name_format (parameters (identifier_self) identifier_self (typed_parameter (identifier_record) identifier_record (type (attribute (identifier_logging) identifier_logging (identifier_LogRecord) identifier_LogRecord )attribute )type )typed_parameter )parameters (type (identifier_str) identifier_str )type (block (if_statement (comparison_operator (call (attribute (identifier_platform) identifier_platform (identifier_system) identifier_system )attribute (argument_list )argument_list )call (string_'Linux') string_'Linux' )comparison_operator (block (return_statement (call (attribute (call (identifier_super) identifier_super (argument_list )argument_list )call (identifier_format) identifier_format )attribute (argument_list (identifier_record) identifier_record )argument_list )call )return_statement )block )if_statement (expression_statement (assignment (attribute (identifier_record) identifier_record (identifier_msg) identifier_msg )attribute (parenthesized_expression (binary_operator (binary_operator (subscript (attribute (identifier_self) identifier_self (identifier_STYLE) identifier_STYLE )attribute (attribute (identifier_record) identifier_record (identifier_levelname) identifier_levelname )attribute )subscript (attribute (identifier_record) identifier_record (identifier_msg) identifier_msg )attribute )binary_operator (subscript (attribute (identifier_self) identifier_self (identifier_STYLE) identifier_STYLE )attribute (string_'END') string_'END' )subscript )binary_operator )parenthesized_expression )assignment )expression_statement (expression_statement (assignment (attribute (identifier_record) identifier_record (identifier_levelname) identifier_levelname )attribute (parenthesized_expression (binary_operator (binary_operator (subscript (attribute (identifier_self) identifier_self (identifier_STYLE) identifier_STYLE )attribute (string_'LEVEL') string_'LEVEL' )subscript (attribute (identifier_record) identifier_record (identifier_levelname) identifier_levelname )attribute )binary_operator (subscript (attribute (identifier_self) identifier_self (identifier_STYLE) identifier_STYLE )attribute (string_'END') string_'END' )subscript )binary_operator )parenthesized_expression )assignment )expression_statement (return_statement (call (attribute (call (identifier_super) identifier_super (argument_list )argument_list )call (identifier_format) identifier_format )attribute (argument_list (identifier_record) identifier_record )argument_list )call )return_statement )block )function_definition )module
Format log records to produce colored messages. :param record: log record :return: log message