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(module (function_definition (function_name_number_of_states) function_name_number_of_states (parameters (identifier_dtrajs) identifier_dtrajs (default_parameter (identifier_only_used) identifier_only_used (False) False )default_parameter )parameters (block (expression_statement (identifier_r) identifier_r )expression_statement (expression_statement (assignment (identifier_dtrajs) identifier_dtrajs (call (identifier__ensure_dtraj_list) identifier__ensure_dtraj_list (argument_list (identifier_dtrajs) identifier_dtrajs )argument_list )call )assignment )expression_statement (if_statement (identifier_only_used) identifier_only_used (block (expression_statement (assignment (identifier_bc) identifier_bc (call (identifier_count_states) identifier_count_states (argument_list (identifier_dtrajs) identifier_dtrajs )argument_list )call )assignment )expression_statement (return_statement (call (attribute (identifier_np) identifier_np (identifier_count_nonzero) identifier_count_nonzero )attribute (argument_list (identifier_bc) identifier_bc )argument_list )call )return_statement )block (else_clause (block (expression_statement (assignment (identifier_imax) identifier_imax (integer_0) integer_0 )assignment )expression_statement (for_statement (identifier_dtraj) identifier_dtraj (identifier_dtrajs) identifier_dtrajs (block (expression_statement (assignment (identifier_imax) identifier_imax (call (identifier_max) identifier_max (argument_list (identifier_imax) identifier_imax (call (attribute (identifier_np) identifier_np (identifier_max) identifier_max )attribute (argument_list (identifier_dtraj) identifier_dtraj )argument_list )call )argument_list )call )assignment )expression_statement )block )for_statement (return_statement (binary_operator (identifier_imax) identifier_imax (integer_1) integer_1 )binary_operator )return_statement )block )else_clause )if_statement )block )function_definition )module
r"""returns the number of states in the given trajectories. Parameters ---------- dtraj : array_like or list of array_like Discretized trajectory or list of discretized trajectories only_used = False : boolean If False, will return max+1, where max is the largest index used. If True, will return the number of states that occur at least once.
(module (function_definition (function_name_add_exception) function_name_add_exception (parameters (identifier_self) identifier_self (identifier_exception) identifier_exception (identifier_stack) identifier_stack (default_parameter (identifier_remote) identifier_remote (False) False )default_parameter )parameters (block (expression_statement (call (attribute (identifier_self) identifier_self (identifier__check_ended) identifier__check_ended )attribute (argument_list )argument_list )call )expression_statement (expression_statement (call (attribute (identifier_self) identifier_self (identifier_add_fault_flag) identifier_add_fault_flag )attribute (argument_list )argument_list )call )expression_statement (if_statement (call (identifier_hasattr) identifier_hasattr (argument_list (identifier_exception) identifier_exception (string_'_recorded') string_'_recorded' )argument_list )call (block (expression_statement (call (identifier_setattr) identifier_setattr (argument_list (identifier_self) identifier_self (string_'cause') string_'cause' (call (identifier_getattr) identifier_getattr (argument_list (identifier_exception) identifier_exception (string_'_cause_id') string_'_cause_id' )argument_list )call )argument_list )call )expression_statement (return_statement )return_statement )block )if_statement (expression_statement (assignment (identifier_exceptions) identifier_exceptions (list )list )assignment )expression_statement (expression_statement (call (attribute (identifier_exceptions) identifier_exceptions (identifier_append) identifier_append )attribute (argument_list (call (identifier_Throwable) identifier_Throwable (argument_list (identifier_exception) identifier_exception (identifier_stack) identifier_stack (identifier_remote) identifier_remote )argument_list )call )argument_list )call )expression_statement (expression_statement (assignment (subscript (attribute (identifier_self) identifier_self (identifier_cause) identifier_cause )attribute (string_'exceptions') string_'exceptions' )subscript (identifier_exceptions) identifier_exceptions )assignment )expression_statement (expression_statement (assignment (subscript (attribute (identifier_self) identifier_self (identifier_cause) identifier_cause )attribute (string_'working_directory') string_'working_directory' )subscript (call (attribute (identifier_os) identifier_os (identifier_getcwd) identifier_getcwd )attribute (argument_list )argument_list )call )assignment )expression_statement )block )function_definition )module
Add an exception to trace entities. :param Exception exception: the catched exception. :param list stack: the output from python built-in `traceback.extract_stack()`. :param bool remote: If False it means it's a client error instead of a downstream service.
(module (function_definition (function_name_num_unused_cpus) function_name_num_unused_cpus (parameters (default_parameter (identifier_thresh) identifier_thresh (integer_10) integer_10 )default_parameter )parameters (block (import_statement (dotted_name (identifier_psutil) identifier_psutil )dotted_name )import_statement (expression_statement (assignment (identifier_cpu_usage) identifier_cpu_usage (call (attribute (identifier_psutil) identifier_psutil (identifier_cpu_percent) identifier_cpu_percent )attribute (argument_list (keyword_argument (identifier_percpu) identifier_percpu (True) True )keyword_argument )argument_list )call )assignment )expression_statement (return_statement (call (identifier_sum) identifier_sum (argument_list (list_comprehension (comparison_operator (identifier_p) identifier_p (identifier_thresh) identifier_thresh )comparison_operator (for_in_clause (identifier_p) identifier_p (identifier_cpu_usage) identifier_cpu_usage )for_in_clause )list_comprehension )argument_list )call )return_statement )block )function_definition )module
Returns the number of cpus with utilization less than `thresh` percent
(module (function_definition (function_name_stft) function_name_stft (parameters (default_parameter (identifier_func) identifier_func (None) None )default_parameter (dictionary_splat_pattern (identifier_kwparams) identifier_kwparams )dictionary_splat_pattern )parameters (block (import_from_statement (dotted_name (identifier_numpy) identifier_numpy (identifier_fft) identifier_fft )dotted_name (dotted_name (identifier_fft) identifier_fft )dotted_name (dotted_name (identifier_ifft) identifier_ifft )dotted_name )import_from_statement (return_statement (call (call (attribute (identifier_stft) identifier_stft (identifier_base) identifier_base )attribute (argument_list (keyword_argument (identifier_transform) identifier_transform (identifier_fft) identifier_fft )keyword_argument (keyword_argument (identifier_inverse_transform) identifier_inverse_transform (identifier_ifft) identifier_ifft )keyword_argument )argument_list )call (argument_list (identifier_func) identifier_func (dictionary_splat (identifier_kwparams) identifier_kwparams )dictionary_splat )argument_list )call )return_statement )block )function_definition )module
Short Time Fourier Transform for complex data. Same to the default STFT strategy, but with new defaults. This is the same to: .. code-block:: python stft.base(transform=numpy.fft.fft, inverse_transform=numpy.fft.ifft) See ``stft.base`` docs for more.
(module (function_definition (function_name_get_share_file) function_name_get_share_file (parameters (identifier_filename) identifier_filename (default_parameter (identifier_devel_dir) identifier_devel_dir (None) None )default_parameter )parameters (block (expression_statement (assignment (identifier_paths) identifier_paths (list (call (identifier_get_share_dir) identifier_get_share_dir (argument_list )argument_list )call )list )assignment )expression_statement (if_statement (comparison_operator (identifier_devel_dir) identifier_devel_dir (None) None )comparison_operator (block (expression_statement (call (attribute (identifier_paths) identifier_paths (identifier_insert) identifier_insert )attribute (argument_list (integer_0) integer_0 (identifier_devel_dir) identifier_devel_dir )argument_list )call )expression_statement )block )if_statement (for_statement (identifier_path) identifier_path (identifier_paths) identifier_paths (block (expression_statement (assignment (identifier_fullpath) identifier_fullpath (call (attribute (attribute (identifier_os) identifier_os (identifier_path) identifier_path )attribute (identifier_join) identifier_join )attribute (argument_list (identifier_path) identifier_path (identifier_filename) identifier_filename )argument_list )call )assignment )expression_statement (if_statement (call (attribute (attribute (identifier_os) identifier_os (identifier_path) identifier_path )attribute (identifier_isfile) identifier_isfile )attribute (argument_list (identifier_fullpath) identifier_fullpath )argument_list )call (block (return_statement (identifier_fullpath) identifier_fullpath )return_statement )block )if_statement )block )for_statement (expression_statement (assignment (identifier_msg) identifier_msg (binary_operator (string_"%s not found in %s; check your installation") string_"%s not found in %s; check your installation" (tuple (identifier_filename) identifier_filename (identifier_paths) identifier_paths )tuple )binary_operator )assignment )expression_statement (raise_statement (call (identifier_ValueError) identifier_ValueError (argument_list (identifier_msg) identifier_msg )argument_list )call )raise_statement )block )function_definition )module
Return a filename in the share directory. @param devel_dir: directory to search when developing @ptype devel_dir: string @param filename: filename to search for @ptype filename: string @return: the found filename or None @rtype: string @raises: ValueError if not found
(module (function_definition (function_name__raise_exception) function_name__raise_exception (parameters (identifier_self) identifier_self (identifier_eobj) identifier_eobj (default_parameter (identifier_edata) identifier_edata (None) None )default_parameter )parameters (block (expression_statement (assignment (pattern_list (identifier__) identifier__ (identifier__) identifier__ (identifier_tbobj) identifier_tbobj )pattern_list (call (attribute (identifier_sys) identifier_sys (identifier_exc_info) identifier_exc_info )attribute (argument_list )argument_list )call )assignment )expression_statement (if_statement (identifier_edata) identifier_edata (block (expression_statement (assignment (identifier_emsg) identifier_emsg (call (attribute (identifier_self) identifier_self (identifier__format_msg) identifier__format_msg )attribute (argument_list (subscript (identifier_eobj) identifier_eobj (string_"msg") string_"msg" )subscript (identifier_edata) identifier_edata )argument_list )call )assignment )expression_statement (expression_statement (call (identifier__rwtb) identifier__rwtb (argument_list (subscript (identifier_eobj) identifier_eobj (string_"type") string_"type" )subscript (identifier_emsg) identifier_emsg (identifier_tbobj) identifier_tbobj )argument_list )call )expression_statement )block (else_clause (block (expression_statement (call (identifier__rwtb) identifier__rwtb (argument_list (subscript (identifier_eobj) identifier_eobj (string_"type") string_"type" )subscript (subscript (identifier_eobj) identifier_eobj (string_"msg") string_"msg" )subscript (identifier_tbobj) identifier_tbobj )argument_list )call )expression_statement )block )else_clause )if_statement )block )function_definition )module
Raise exception by name.
(module (function_definition (function_name_set_empty_text) function_name_set_empty_text (parameters (identifier_self) identifier_self )parameters (block (expression_statement (call (attribute (attribute (identifier_self) identifier_self (identifier_buffer) identifier_buffer )attribute (identifier_insert_with_tags_by_name) identifier_insert_with_tags_by_name )attribute (argument_list (call (attribute (attribute (identifier_self) identifier_self (identifier_buffer) identifier_buffer )attribute (identifier_get_start_iter) identifier_get_start_iter )attribute (argument_list )argument_list )call (attribute (identifier_self) identifier_self (identifier_empty_text) identifier_empty_text )attribute (string_'empty-text') string_'empty-text' )argument_list )call )expression_statement )block )function_definition )module
Display the empty text
(module (function_definition (function_name_insert) function_name_insert (parameters (identifier_self) identifier_self (identifier_state) identifier_state (identifier_token) identifier_token )parameters (block (if_statement (comparison_operator (identifier_token) identifier_token (call (identifier_EndSymbol) identifier_EndSymbol (argument_list )argument_list )call )comparison_operator (block (return_statement (subscript (subscript (identifier_self) identifier_self (identifier_state) identifier_state )subscript (call (identifier_EndSymbol) identifier_EndSymbol (argument_list )argument_list )call )subscript )return_statement )block )if_statement (import_from_statement (dotted_name (identifier_pydsl) identifier_pydsl (identifier_check) identifier_check )dotted_name (dotted_name (identifier_check) identifier_check )dotted_name )import_from_statement (expression_statement (assignment (identifier_symbol_list) identifier_symbol_list (list_comprehension (identifier_x) identifier_x (for_in_clause (identifier_x) identifier_x (subscript (identifier_self) identifier_self (identifier_state) identifier_state )subscript )for_in_clause (if_clause (boolean_operator (call (identifier_isinstance) identifier_isinstance (argument_list (identifier_x) identifier_x (identifier_TerminalSymbol) identifier_TerminalSymbol )argument_list )call (call (identifier_check) identifier_check (argument_list (attribute (identifier_x) identifier_x (identifier_gd) identifier_gd )attribute (list (identifier_token) identifier_token )list )argument_list )call )boolean_operator )if_clause )list_comprehension )assignment )expression_statement (if_statement (not_operator (identifier_symbol_list) identifier_symbol_list )not_operator (block (return_statement (dictionary (pair (string_"action") string_"action" (string_"Fail") string_"Fail" )pair )dictionary )return_statement )block )if_statement (if_statement (comparison_operator (call (identifier_len) identifier_len (argument_list (identifier_symbol_list) identifier_symbol_list )argument_list )call (integer_1) integer_1 )comparison_operator (block (raise_statement (call (identifier_Exception) identifier_Exception (argument_list (string_"Multiple symbols matches input") string_"Multiple symbols matches input" )argument_list )call )raise_statement )block )if_statement (expression_statement (assignment (identifier_symbol) identifier_symbol (subscript (identifier_symbol_list) identifier_symbol_list (integer_0) integer_0 )subscript )assignment )expression_statement (return_statement (subscript (subscript (identifier_self) identifier_self (identifier_state) identifier_state )subscript (identifier_symbol) identifier_symbol )subscript )return_statement )block )function_definition )module
change internal state, return action
(module (function_definition (function_name_accumulate) function_name_accumulate (parameters (identifier_self) identifier_self (typed_parameter (identifier_axis) identifier_axis (type (identifier_AxisIdentifier) identifier_AxisIdentifier )type )typed_parameter )parameters (type (identifier_HistogramBase) identifier_HistogramBase )type (block (expression_statement (assignment (identifier_new_one) identifier_new_one (call (attribute (identifier_self) identifier_self (identifier_copy) identifier_copy )attribute (argument_list )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_axis_id) identifier_axis_id (call (attribute (identifier_self) identifier_self (identifier__get_axis) identifier__get_axis )attribute (argument_list (identifier_axis) identifier_axis )argument_list )call )assignment )expression_statement (expression_statement (assignment (attribute (identifier_new_one) identifier_new_one (identifier__frequencies) identifier__frequencies )attribute (call (attribute (identifier_np) identifier_np (identifier_cumsum) identifier_cumsum )attribute (argument_list (attribute (identifier_new_one) identifier_new_one (identifier_frequencies) identifier_frequencies )attribute (subscript (identifier_axis_id) identifier_axis_id (integer_0) integer_0 )subscript )argument_list )call )assignment )expression_statement (return_statement (identifier_new_one) identifier_new_one )return_statement )block )function_definition )module
Calculate cumulative frequencies along a certain axis. Returns ------- new_hist: Histogram of the same type & size
(module (function_definition (function_name_version) function_name_version (parameters (identifier_self) identifier_self (typed_parameter (identifier_bundle) identifier_bundle (type (identifier_str) identifier_str )type )typed_parameter (typed_parameter (identifier_date) identifier_date (type (attribute (identifier_dt) identifier_dt (identifier_datetime) identifier_datetime )attribute )type )typed_parameter )parameters (type (attribute (identifier_models) identifier_models (identifier_Version) identifier_Version )attribute )type (block (return_statement (parenthesized_expression (call (attribute (call (attribute (call (attribute (attribute (attribute (identifier_self) identifier_self (identifier_Version) identifier_Version )attribute (identifier_query) identifier_query )attribute (identifier_join) identifier_join )attribute (argument_list (attribute (attribute (identifier_models) identifier_models (identifier_Version) identifier_Version )attribute (identifier_bundle) identifier_bundle )attribute )argument_list )call (identifier_filter) identifier_filter )attribute (argument_list (comparison_operator (attribute (attribute (identifier_models) identifier_models (identifier_Bundle) identifier_Bundle )attribute (identifier_name) identifier_name )attribute (identifier_bundle) identifier_bundle )comparison_operator (comparison_operator (attribute (attribute (identifier_models) identifier_models (identifier_Version) identifier_Version )attribute (identifier_created_at) identifier_created_at )attribute (identifier_date) identifier_date )comparison_operator )argument_list )call (identifier_first) identifier_first )attribute (argument_list )argument_list )call )parenthesized_expression )return_statement )block )function_definition )module
Fetch a version from the store.
(module (function_definition (function_name_clear_all_flair) function_name_clear_all_flair (parameters (identifier_self) identifier_self )parameters (block (expression_statement (assignment (identifier_csv) identifier_csv (list_comprehension (dictionary (pair (string_'user') string_'user' (subscript (identifier_x) identifier_x (string_'user') string_'user' )subscript )pair )dictionary (for_in_clause (identifier_x) identifier_x (call (attribute (identifier_self) identifier_self (identifier_get_flair_list) identifier_get_flair_list )attribute (argument_list (keyword_argument (identifier_limit) identifier_limit (None) None )keyword_argument )argument_list )call )for_in_clause )list_comprehension )assignment )expression_statement (if_statement (identifier_csv) identifier_csv (block (return_statement (call (attribute (identifier_self) identifier_self (identifier_set_flair_csv) identifier_set_flair_csv )attribute (argument_list (identifier_csv) identifier_csv )argument_list )call )return_statement )block (else_clause (block (return_statement )return_statement )block )else_clause )if_statement )block )function_definition )module
Remove all user flair on this subreddit. :returns: The json response from the server when there is flair to clear, otherwise returns None.
(module (function_definition (function_name_contains) function_name_contains (parameters (identifier_self) identifier_self (identifier_value) identifier_value )parameters (block (expression_statement (assignment (identifier_str_value) identifier_str_value (call (attribute (identifier_StringConverter) identifier_StringConverter (identifier_to_nullable_string) identifier_to_nullable_string )attribute (argument_list (identifier_value) identifier_value )argument_list )call )assignment )expression_statement (for_statement (identifier_element) identifier_element (identifier_self) identifier_self (block (expression_statement (assignment (identifier_str_element) identifier_str_element (call (attribute (identifier_StringConverter) identifier_StringConverter (identifier_to_string) identifier_to_string )attribute (argument_list (identifier_element) identifier_element )argument_list )call )assignment )expression_statement (if_statement (boolean_operator (comparison_operator (identifier_str_value) identifier_str_value (None) None )comparison_operator (comparison_operator (identifier_str_element) identifier_str_element (None) None )comparison_operator )boolean_operator (block (return_statement (True) True )return_statement )block )if_statement (if_statement (boolean_operator (comparison_operator (identifier_str_value) identifier_str_value (None) None )comparison_operator (comparison_operator (identifier_str_element) identifier_str_element (None) None )comparison_operator )boolean_operator (block (continue_statement )continue_statement )block )if_statement (if_statement (comparison_operator (identifier_str_value) identifier_str_value (identifier_str_element) identifier_str_element )comparison_operator (block (return_statement (True) True )return_statement )block )if_statement )block )for_statement (return_statement (False) False )return_statement )block )function_definition )module
Checks if this array contains a value. The check uses direct comparison between elements and the specified value. :param value: a value to be checked :return: true if this array contains the value or false otherwise.
(module (function_definition (function_name_unit_system_id) function_name_unit_system_id (parameters (identifier_self) identifier_self )parameters (block (if_statement (comparison_operator (attribute (identifier_self) identifier_self (identifier__unit_system_id) identifier__unit_system_id )attribute (None) None )comparison_operator (block (expression_statement (assignment (identifier_hash_data) identifier_hash_data (call (identifier_bytearray) identifier_bytearray (argument_list )argument_list )call )assignment )expression_statement (for_statement (pattern_list (identifier_k) identifier_k (identifier_v) identifier_v )pattern_list (call (identifier_sorted) identifier_sorted (argument_list (call (attribute (attribute (identifier_self) identifier_self (identifier_lut) identifier_lut )attribute (identifier_items) identifier_items )attribute (argument_list )argument_list )call )argument_list )call (block (expression_statement (call (attribute (identifier_hash_data) identifier_hash_data (identifier_extend) identifier_extend )attribute (argument_list (call (attribute (identifier_k) identifier_k (identifier_encode) identifier_encode )attribute (argument_list (string_"utf8") string_"utf8" )argument_list )call )argument_list )call )expression_statement (expression_statement (call (attribute (identifier_hash_data) identifier_hash_data (identifier_extend) identifier_extend )attribute (argument_list (call (attribute (call (identifier_repr) identifier_repr (argument_list (identifier_v) identifier_v )argument_list )call (identifier_encode) identifier_encode )attribute (argument_list (string_"utf8") string_"utf8" )argument_list )call )argument_list )call )expression_statement )block )for_statement (expression_statement (assignment (identifier_m) identifier_m (call (identifier_md5) identifier_md5 (argument_list )argument_list )call )assignment )expression_statement (expression_statement (call (attribute (identifier_m) identifier_m (identifier_update) identifier_update )attribute (argument_list (identifier_hash_data) identifier_hash_data )argument_list )call )expression_statement (expression_statement (assignment (attribute (identifier_self) identifier_self (identifier__unit_system_id) identifier__unit_system_id )attribute (call (identifier_str) identifier_str (argument_list (call (attribute (identifier_m) identifier_m (identifier_hexdigest) identifier_hexdigest )attribute (argument_list )argument_list )call )argument_list )call )assignment )expression_statement )block )if_statement (return_statement (attribute (identifier_self) identifier_self (identifier__unit_system_id) identifier__unit_system_id )attribute )return_statement )block )function_definition )module
This is a unique identifier for the unit registry created from a FNV hash. It is needed to register a dataset's code unit system in the unit system registry.
(module (function_definition (function_name_prepare_gag_lsm) function_name_prepare_gag_lsm (parameters (identifier_self) identifier_self (identifier_lsm_precip_data_var) identifier_lsm_precip_data_var (identifier_lsm_precip_type) identifier_lsm_precip_type (default_parameter (identifier_interpolation_type) identifier_interpolation_type (None) None )default_parameter )parameters (block (if_statement (comparison_operator (attribute (identifier_self) identifier_self (identifier_l2g) identifier_l2g )attribute (None) None )comparison_operator (block (raise_statement (call (identifier_ValueError) identifier_ValueError (argument_list (string_"LSM converter not loaded ...") string_"LSM converter not loaded ..." )argument_list )call )raise_statement )block )if_statement (for_statement (identifier_unif_precip_card) identifier_unif_precip_card (attribute (identifier_self) identifier_self (identifier_UNIFORM_PRECIP_CARDS) identifier_UNIFORM_PRECIP_CARDS )attribute (block (expression_statement (call (attribute (attribute (identifier_self) identifier_self (identifier_project_manager) identifier_project_manager )attribute (identifier_deleteCard) identifier_deleteCard )attribute (argument_list (identifier_unif_precip_card) identifier_unif_precip_card (attribute (identifier_self) identifier_self (identifier_db_session) identifier_db_session )attribute )argument_list )call )expression_statement )block )for_statement (with_statement (with_clause (with_item (call (identifier_tmp_chdir) identifier_tmp_chdir (argument_list (attribute (attribute (identifier_self) identifier_self (identifier_project_manager) identifier_project_manager )attribute (identifier_project_directory) identifier_project_directory )attribute )argument_list )call )with_item )with_clause (block (expression_statement (assignment (identifier_out_gage_file) identifier_out_gage_file (call (attribute (string_'{0}.gag') string_'{0}.gag' (identifier_format) identifier_format )attribute (argument_list (attribute (attribute (identifier_self) identifier_self (identifier_project_manager) identifier_project_manager )attribute (identifier_name) identifier_name )attribute )argument_list )call )assignment )expression_statement (expression_statement (call (attribute (attribute (identifier_self) identifier_self (identifier_l2g) identifier_l2g )attribute (identifier_lsm_precip_to_gssha_precip_gage) identifier_lsm_precip_to_gssha_precip_gage )attribute (argument_list (identifier_out_gage_file) identifier_out_gage_file (keyword_argument (identifier_lsm_data_var) identifier_lsm_data_var (identifier_lsm_precip_data_var) identifier_lsm_precip_data_var )keyword_argument (keyword_argument (identifier_precip_type) identifier_precip_type (identifier_lsm_precip_type) identifier_lsm_precip_type )keyword_argument )argument_list )call )expression_statement (expression_statement (call (attribute (identifier_self) identifier_self (identifier__update_simulation_end_from_lsm) identifier__update_simulation_end_from_lsm )attribute (argument_list )argument_list )call )expression_statement (expression_statement (call (attribute (identifier_self) identifier_self (identifier_set_simulation_duration) identifier_set_simulation_duration )attribute (argument_list (binary_operator (attribute (identifier_self) identifier_self (identifier_simulation_end) identifier_simulation_end )attribute (attribute (identifier_self) identifier_self (identifier_simulation_start) identifier_simulation_start )attribute )binary_operator )argument_list )call )expression_statement (expression_statement (call (attribute (identifier_self) identifier_self (identifier_add_precip_file) identifier_add_precip_file )attribute (argument_list (identifier_out_gage_file) identifier_out_gage_file (identifier_interpolation_type) identifier_interpolation_type )argument_list )call )expression_statement (expression_statement (call (attribute (attribute (attribute (identifier_self) identifier_self (identifier_l2g) identifier_l2g )attribute (identifier_xd) identifier_xd )attribute (identifier_close) identifier_close )attribute (argument_list )argument_list )call )expression_statement )block )with_statement )block )function_definition )module
Prepares Gage output for GSSHA simulation Parameters: lsm_precip_data_var(list or str): String of name for precipitation variable name or list of precip variable names. See: :func:`~gsshapy.grid.GRIDtoGSSHA.lsm_precip_to_gssha_precip_gage`. lsm_precip_type(str): Type of precipitation. See: :func:`~gsshapy.grid.GRIDtoGSSHA.lsm_precip_to_gssha_precip_gage`. interpolation_type(str): Type of interpolation for LSM precipitation. Can be "INV_DISTANCE" or "THIESSEN". Default is "THIESSEN".
(module (function_definition (function_name___get_supported_file_types_string) function_name___get_supported_file_types_string (parameters (identifier_self) identifier_self )parameters (block (expression_statement (assignment (identifier_languages) identifier_languages (list (string_"All Files (*)") string_"All Files (*)" )list )assignment )expression_statement (for_statement (identifier_language) identifier_language (attribute (attribute (identifier_self) identifier_self (identifier___languages_model) identifier___languages_model )attribute (identifier_languages) identifier_languages )attribute (block (expression_statement (call (attribute (identifier_languages) identifier_languages (identifier_append) identifier_append )attribute (argument_list (call (attribute (string_"{0} Files ({1})") string_"{0} Files ({1})" (identifier_format) identifier_format )attribute (argument_list (attribute (identifier_language) identifier_language (identifier_name) identifier_name )attribute (call (attribute (call (attribute (string_" ") string_" " (identifier_join) identifier_join )attribute (argument_list (call (attribute (attribute (identifier_language) identifier_language (identifier_extensions) identifier_extensions )attribute (identifier_split) identifier_split )attribute (argument_list (string_"|") string_"|" )argument_list )call )argument_list )call (identifier_replace) identifier_replace )attribute (argument_list (string_"\\") string_"\\" (string_"*") string_"*" )argument_list )call )argument_list )call )argument_list )call )expression_statement )block )for_statement (return_statement (call (attribute (string_";;") string_";;" (identifier_join) identifier_join )attribute (argument_list (identifier_languages) identifier_languages )argument_list )call )return_statement )block )function_definition )module
Returns the supported file types dialog string.
(module (function_definition (function_name_extractOne) function_name_extractOne (parameters (identifier_query) identifier_query (identifier_choices) identifier_choices (default_parameter (identifier_processor) identifier_processor (identifier_default_processor) identifier_default_processor )default_parameter (default_parameter (identifier_scorer) identifier_scorer (identifier_default_scorer) identifier_default_scorer )default_parameter (default_parameter (identifier_score_cutoff) identifier_score_cutoff (integer_0) integer_0 )default_parameter )parameters (block (expression_statement (assignment (identifier_best_list) identifier_best_list (call (identifier_extractWithoutOrder) identifier_extractWithoutOrder (argument_list (identifier_query) identifier_query (identifier_choices) identifier_choices (identifier_processor) identifier_processor (identifier_scorer) identifier_scorer (identifier_score_cutoff) identifier_score_cutoff )argument_list )call )assignment )expression_statement (try_statement (block (return_statement (call (identifier_max) identifier_max (argument_list (identifier_best_list) identifier_best_list (keyword_argument (identifier_key) identifier_key (lambda (lambda_parameters (identifier_i) identifier_i )lambda_parameters (subscript (identifier_i) identifier_i (integer_1) integer_1 )subscript )lambda )keyword_argument )argument_list )call )return_statement )block (except_clause (identifier_ValueError) identifier_ValueError (block (return_statement (None) None )return_statement )block )except_clause )try_statement )block )function_definition )module
Find the single best match above a score in a list of choices. This is a convenience method which returns the single best choice. See extract() for the full arguments list. Args: query: A string to match against choices: A list or dictionary of choices, suitable for use with extract(). processor: Optional function for transforming choices before matching. See extract(). scorer: Scoring function for extract(). score_cutoff: Optional argument for score threshold. If the best match is found, but it is not greater than this number, then return None anyway ("not a good enough match"). Defaults to 0. Returns: A tuple containing a single match and its score, if a match was found that was above score_cutoff. Otherwise, returns None.
(module (function_definition (function_name_path_list) function_name_path_list (parameters (identifier_self) identifier_self (default_parameter (identifier_sep) identifier_sep (attribute (identifier_os) identifier_os (identifier_pathsep) identifier_pathsep )attribute )default_parameter )parameters (block (import_from_statement (dotted_name (identifier_pathlib) identifier_pathlib )dotted_name (dotted_name (identifier_Path) identifier_Path )dotted_name )import_from_statement (return_statement (list_comprehension (call (identifier_Path) identifier_Path (argument_list (identifier_pathstr) identifier_pathstr )argument_list )call (for_in_clause (identifier_pathstr) identifier_pathstr (call (attribute (identifier_self) identifier_self (identifier_split) identifier_split )attribute (argument_list (identifier_sep) identifier_sep )argument_list )call )for_in_clause )list_comprehension )return_statement )block )function_definition )module
Return list of Path objects.
(module (function_definition (function_name_zrange) function_name_zrange (parameters (identifier_self) identifier_self (identifier_name) identifier_name (identifier_start) identifier_start (identifier_end) identifier_end (default_parameter (identifier_desc) identifier_desc (False) False )default_parameter (default_parameter (identifier_withscores) identifier_withscores (False) False )default_parameter (default_parameter (identifier_score_cast_func) identifier_score_cast_func (identifier_float) identifier_float )default_parameter )parameters (block (if_statement (identifier_desc) identifier_desc (block (return_statement (await (call (attribute (identifier_self) identifier_self (identifier_zrevrange) identifier_zrevrange )attribute (argument_list (identifier_name) identifier_name (identifier_start) identifier_start (identifier_end) identifier_end (identifier_withscores) identifier_withscores (identifier_score_cast_func) identifier_score_cast_func )argument_list )call )await )return_statement )block )if_statement (expression_statement (assignment (identifier_pieces) identifier_pieces (list (string_'ZRANGE') string_'ZRANGE' (identifier_name) identifier_name (identifier_start) identifier_start (identifier_end) identifier_end )list )assignment )expression_statement (if_statement (identifier_withscores) identifier_withscores (block (expression_statement (call (attribute (identifier_pieces) identifier_pieces (identifier_append) identifier_append )attribute (argument_list (call (identifier_b) identifier_b (argument_list (string_'WITHSCORES') string_'WITHSCORES' )argument_list )call )argument_list )call )expression_statement )block )if_statement (expression_statement (assignment (identifier_options) identifier_options (dictionary (pair (string_'withscores') string_'withscores' (identifier_withscores) identifier_withscores )pair (pair (string_'score_cast_func') string_'score_cast_func' (identifier_score_cast_func) identifier_score_cast_func )pair )dictionary )assignment )expression_statement (return_statement (await (call (attribute (identifier_self) identifier_self (identifier_execute_command) identifier_execute_command )attribute (argument_list (list_splat (identifier_pieces) identifier_pieces )list_splat (dictionary_splat (identifier_options) identifier_options )dictionary_splat )argument_list )call )await )return_statement )block )function_definition )module
Return a range of values from sorted set ``name`` between ``start`` and ``end`` sorted in ascending order. ``start`` and ``end`` can be negative, indicating the end of the range. ``desc`` a boolean indicating whether to sort the results descendingly ``withscores`` indicates to return the scores along with the values. The return type is a list of (value, score) pairs ``score_cast_func`` a callable used to cast the score return value
(module (function_definition (function_name_connect_edges) function_name_connect_edges (parameters (identifier_graph) identifier_graph )parameters (block (expression_statement (assignment (identifier_paths) identifier_paths (list )list )assignment )expression_statement (for_statement (pattern_list (identifier_start) identifier_start (identifier_end) identifier_end )pattern_list (call (attribute (identifier_graph) identifier_graph (identifier_array) identifier_array )attribute (argument_list (attribute (identifier_graph) identifier_graph (identifier_kdims) identifier_kdims )attribute )argument_list )call (block (expression_statement (assignment (identifier_start_ds) identifier_start_ds (subscript (attribute (identifier_graph) identifier_graph (identifier_nodes) identifier_nodes )attribute (slice (colon) colon )slice (slice (colon) colon )slice (identifier_start) identifier_start )subscript )assignment )expression_statement (expression_statement (assignment (identifier_end_ds) identifier_end_ds (subscript (attribute (identifier_graph) identifier_graph (identifier_nodes) identifier_nodes )attribute (slice (colon) colon )slice (slice (colon) colon )slice (identifier_end) identifier_end )subscript )assignment )expression_statement (if_statement (boolean_operator (not_operator (call (identifier_len) identifier_len (argument_list (identifier_start_ds) identifier_start_ds )argument_list )call )not_operator (not_operator (call (identifier_len) identifier_len (argument_list (identifier_end_ds) identifier_end_ds )argument_list )call )not_operator )boolean_operator (block (raise_statement (call (identifier_ValueError) identifier_ValueError (argument_list (string_'Could not find node positions for all edges') string_'Could not find node positions for all edges' )argument_list )call )raise_statement )block )if_statement (expression_statement (assignment (identifier_start) identifier_start (call (attribute (identifier_start_ds) identifier_start_ds (identifier_array) identifier_array )attribute (argument_list (subscript (attribute (identifier_start_ds) identifier_start_ds (identifier_kdims) identifier_kdims )attribute (slice (colon) colon (integer_2) integer_2 )slice )subscript )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_end) identifier_end (call (attribute (identifier_end_ds) identifier_end_ds (identifier_array) identifier_array )attribute (argument_list (subscript (attribute (identifier_end_ds) identifier_end_ds (identifier_kdims) identifier_kdims )attribute (slice (colon) colon (integer_2) integer_2 )slice )subscript )argument_list )call )assignment )expression_statement (expression_statement (call (attribute (identifier_paths) identifier_paths (identifier_append) identifier_append )attribute (argument_list (call (attribute (identifier_np) identifier_np (identifier_array) identifier_array )attribute (argument_list (list (subscript (identifier_start) identifier_start (integer_0) integer_0 )subscript (subscript (identifier_end) identifier_end (integer_0) integer_0 )subscript )list )argument_list )call )argument_list )call )expression_statement )block )for_statement (return_statement (identifier_paths) identifier_paths )return_statement )block )function_definition )module
Given a Graph element containing abstract edges compute edge segments directly connecting the source and target nodes. This operation just uses internal HoloViews operations and will be a lot slower than the pandas equivalent.
(module (function_definition (function_name_delete_duplicates) function_name_delete_duplicates (parameters (identifier_seq) identifier_seq )parameters (block (expression_statement (assignment (identifier_seen) identifier_seen (call (identifier_set) identifier_set (argument_list )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_seen_add) identifier_seen_add (attribute (identifier_seen) identifier_seen (identifier_add) identifier_add )attribute )assignment )expression_statement (return_statement (list_comprehension (identifier_x) identifier_x (for_in_clause (identifier_x) identifier_x (identifier_seq) identifier_seq )for_in_clause (if_clause (not_operator (parenthesized_expression (boolean_operator (comparison_operator (identifier_x) identifier_x (identifier_seen) identifier_seen )comparison_operator (call (identifier_seen_add) identifier_seen_add (argument_list (identifier_x) identifier_x )argument_list )call )boolean_operator )parenthesized_expression )not_operator )if_clause )list_comprehension )return_statement )block )function_definition )module
Remove duplicates from an iterable, preserving the order. Args: seq: Iterable of various type. Returns: list: List of unique objects.
(module (function_definition (function_name_emit_after) function_name_emit_after (parameters (identifier_self) identifier_self (typed_parameter (identifier_event) identifier_event (type (identifier_str) identifier_str )type )typed_parameter )parameters (type (identifier_Callable) identifier_Callable )type (block (function_definition (function_name_outer) function_name_outer (parameters (identifier_func) identifier_func )parameters (block (decorated_definition (decorator (call (identifier_wraps) identifier_wraps (argument_list (identifier_func) identifier_func )argument_list )call )decorator (function_definition (function_name_wrapper) function_name_wrapper (parameters (list_splat_pattern (identifier_args) identifier_args )list_splat_pattern (dictionary_splat_pattern (identifier_kwargs) identifier_kwargs )dictionary_splat_pattern )parameters (block (expression_statement (assignment (identifier_returned) identifier_returned (call (identifier_func) identifier_func (argument_list (list_splat (identifier_args) identifier_args )list_splat (dictionary_splat (identifier_kwargs) identifier_kwargs )dictionary_splat )argument_list )call )assignment )expression_statement (expression_statement (call (attribute (identifier_self) identifier_self (identifier_emit) identifier_emit )attribute (argument_list (identifier_event) identifier_event )argument_list )call )expression_statement (return_statement (identifier_returned) identifier_returned )return_statement )block )function_definition )decorated_definition (return_statement (identifier_wrapper) identifier_wrapper )return_statement )block )function_definition (return_statement (identifier_outer) identifier_outer )return_statement )block )function_definition )module
Decorator that emits events after the function is completed. :param event: Name of the event. :type event: str :return: Callable .. note: This plainly just calls functions without passing params into the subscribed callables. This is great if you want to do some kind of post processing without the callable requiring information before doing so.
(module (function_definition (function_name__cldf2lexstat) function_name__cldf2lexstat (parameters (identifier_dataset) identifier_dataset (default_parameter (identifier_segments) identifier_segments (string_'segments') string_'segments' )default_parameter (default_parameter (identifier_transcription) identifier_transcription (string_'value') string_'value' )default_parameter (default_parameter (identifier_row) identifier_row (string_'parameter_id') string_'parameter_id' )default_parameter (default_parameter (identifier_col) identifier_col (string_'language_id') string_'language_id' )default_parameter )parameters (block (expression_statement (assignment (identifier_D) identifier_D (call (identifier__cldf2wld) identifier__cldf2wld (argument_list (identifier_dataset) identifier_dataset )argument_list )call )assignment )expression_statement (return_statement (call (attribute (identifier_lingpy) identifier_lingpy (identifier_LexStat) identifier_LexStat )attribute (argument_list (identifier_D) identifier_D (keyword_argument (identifier_segments) identifier_segments (identifier_segments) identifier_segments )keyword_argument (keyword_argument (identifier_transcription) identifier_transcription (identifier_transcription) identifier_transcription )keyword_argument (keyword_argument (identifier_row) identifier_row (identifier_row) identifier_row )keyword_argument (keyword_argument (identifier_col) identifier_col (identifier_col) identifier_col )keyword_argument )argument_list )call )return_statement )block )function_definition )module
Read LexStat object from cldf dataset.
(module (function_definition (function_name_auc) function_name_auc (parameters (identifier_y_true) identifier_y_true (identifier_y_pred) identifier_y_pred (default_parameter (identifier_round) identifier_round (True) True )default_parameter )parameters (block (expression_statement (assignment (pattern_list (identifier_y_true) identifier_y_true (identifier_y_pred) identifier_y_pred )pattern_list (call (identifier__mask_value_nan) identifier__mask_value_nan (argument_list (identifier_y_true) identifier_y_true (identifier_y_pred) identifier_y_pred )argument_list )call )assignment )expression_statement (if_statement (identifier_round) identifier_round (block (expression_statement (assignment (identifier_y_true) identifier_y_true (call (attribute (identifier_y_true) identifier_y_true (identifier_round) identifier_round )attribute (argument_list )argument_list )call )assignment )expression_statement )block )if_statement (if_statement (boolean_operator (comparison_operator (call (identifier_len) identifier_len (argument_list (identifier_y_true) identifier_y_true )argument_list )call (integer_0) integer_0 )comparison_operator (comparison_operator (call (identifier_len) identifier_len (argument_list (call (attribute (identifier_np) identifier_np (identifier_unique) identifier_unique )attribute (argument_list (identifier_y_true) identifier_y_true )argument_list )call )argument_list )call (integer_2) integer_2 )comparison_operator )boolean_operator (block (return_statement (attribute (identifier_np) identifier_np (identifier_nan) identifier_nan )attribute )return_statement )block )if_statement (return_statement (call (attribute (identifier_skm) identifier_skm (identifier_roc_auc_score) identifier_roc_auc_score )attribute (argument_list (identifier_y_true) identifier_y_true (identifier_y_pred) identifier_y_pred )argument_list )call )return_statement )block )function_definition )module
Area under the ROC curve
(module (function_definition (function_name_notify_systemd) function_name_notify_systemd (parameters )parameters (block (try_statement (block (import_statement (dotted_name (identifier_systemd) identifier_systemd (identifier_daemon) identifier_daemon )dotted_name )import_statement )block (except_clause (identifier_ImportError) identifier_ImportError (block (if_statement (boolean_operator (call (attribute (attribute (attribute (identifier_salt) identifier_salt (identifier_utils) identifier_utils )attribute (identifier_path) identifier_path )attribute (identifier_which) identifier_which )attribute (argument_list (string_'systemd-notify') string_'systemd-notify' )argument_list )call (line_continuation_\) line_continuation_\ (call (identifier_systemd_notify_call) identifier_systemd_notify_call (argument_list (string_'--booted') string_'--booted' )argument_list )call )boolean_operator (block (expression_statement (assignment (identifier_notify_socket) identifier_notify_socket (call (attribute (identifier_os) identifier_os (identifier_getenv) identifier_getenv )attribute (argument_list (string_'NOTIFY_SOCKET') string_'NOTIFY_SOCKET' )argument_list )call )assignment )expression_statement (if_statement (identifier_notify_socket) identifier_notify_socket (block (if_statement (call (attribute (identifier_notify_socket) identifier_notify_socket (identifier_startswith) identifier_startswith )attribute (argument_list (string_'@') string_'@' )argument_list )call (block (expression_statement (assignment (identifier_notify_socket) identifier_notify_socket (call (attribute (string_'\0{0}') string_'\0{0}' (identifier_format) identifier_format )attribute (argument_list (subscript (identifier_notify_socket) identifier_notify_socket (slice (integer_1) integer_1 (colon) colon )slice )subscript )argument_list )call )assignment )expression_statement )block )if_statement (try_statement (block (expression_statement (assignment (identifier_sock) identifier_sock (call (attribute (identifier_socket) identifier_socket (identifier_socket) identifier_socket )attribute (argument_list (attribute (identifier_socket) identifier_socket (identifier_AF_UNIX) identifier_AF_UNIX )attribute (attribute (identifier_socket) identifier_socket (identifier_SOCK_DGRAM) identifier_SOCK_DGRAM )attribute )argument_list )call )assignment )expression_statement (expression_statement (call (attribute (identifier_sock) identifier_sock (identifier_connect) identifier_connect )attribute (argument_list (identifier_notify_socket) identifier_notify_socket )argument_list )call )expression_statement (expression_statement (call (attribute (identifier_sock) identifier_sock (identifier_sendall) identifier_sendall )attribute (argument_list (call (attribute (string_'READY=1') string_'READY=1' (identifier_encode) identifier_encode )attribute (argument_list )argument_list )call )argument_list )call )expression_statement (expression_statement (call (attribute (identifier_sock) identifier_sock (identifier_close) identifier_close )attribute (argument_list )argument_list )call )expression_statement )block (except_clause (attribute (identifier_socket) identifier_socket (identifier_error) identifier_error )attribute (block (return_statement (call (identifier_systemd_notify_call) identifier_systemd_notify_call (argument_list (string_'--ready') string_'--ready' )argument_list )call )return_statement )block )except_clause )try_statement (return_statement (True) True )return_statement )block )if_statement )block )if_statement (return_statement (False) False )return_statement )block )except_clause )try_statement (if_statement (call (attribute (attribute (identifier_systemd) identifier_systemd (identifier_daemon) identifier_daemon )attribute (identifier_booted) identifier_booted )attribute (argument_list )argument_list )call (block (try_statement (block (return_statement (call (attribute (attribute (identifier_systemd) identifier_systemd (identifier_daemon) identifier_daemon )attribute (identifier_notify) identifier_notify )attribute (argument_list (string_'READY=1') string_'READY=1' )argument_list )call )return_statement )block (except_clause (identifier_SystemError) identifier_SystemError (block (pass_statement )pass_statement )block )except_clause )try_statement )block )if_statement )block )function_definition )module
Notify systemd that this process has started
(module (function_definition (function_name_unconsumed_ranges) function_name_unconsumed_ranges (parameters (identifier_self) identifier_self )parameters (block (expression_statement (assignment (identifier_res) identifier_res (call (identifier_IntervalTree) identifier_IntervalTree (argument_list )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_prev) identifier_prev (None) None )assignment )expression_statement (expression_statement (assignment (identifier_ranges) identifier_ranges (call (identifier_sorted) identifier_sorted (argument_list (list_comprehension (identifier_x) identifier_x (for_in_clause (identifier_x) identifier_x (attribute (identifier_self) identifier_self (identifier_range_set) identifier_range_set )attribute )for_in_clause )list_comprehension (keyword_argument (identifier_key) identifier_key (lambda (lambda_parameters (identifier_x) identifier_x )lambda_parameters (attribute (identifier_x) identifier_x (identifier_begin) identifier_begin )attribute )lambda )keyword_argument )argument_list )call )assignment )expression_statement (for_statement (identifier_rng) identifier_rng (identifier_ranges) identifier_ranges (block (if_statement (comparison_operator (identifier_prev) identifier_prev (None) None )comparison_operator (block (expression_statement (assignment (identifier_prev) identifier_prev (identifier_rng) identifier_rng )assignment )expression_statement (continue_statement )continue_statement )block )if_statement (expression_statement (call (attribute (identifier_res) identifier_res (identifier_add) identifier_add )attribute (argument_list (call (identifier_Interval) identifier_Interval (argument_list (attribute (identifier_prev) identifier_prev (identifier_end) identifier_end )attribute (attribute (identifier_rng) identifier_rng (identifier_begin) identifier_begin )attribute )argument_list )call )argument_list )call )expression_statement (expression_statement (assignment (identifier_prev) identifier_prev (identifier_rng) identifier_rng )assignment )expression_statement )block )for_statement (if_statement (comparison_operator (call (identifier_len) identifier_len (argument_list (subscript (attribute (identifier_self) identifier_self (identifier_range_set) identifier_range_set )attribute (call (attribute (identifier_self) identifier_self (identifier_tell) identifier_tell )attribute (argument_list )argument_list )call )subscript )argument_list )call (integer_1) integer_1 )comparison_operator (block (expression_statement (call (attribute (identifier_res) identifier_res (identifier_add) identifier_add )attribute (argument_list (call (identifier_Interval) identifier_Interval (argument_list (attribute (identifier_prev) identifier_prev (identifier_end) identifier_end )attribute (call (attribute (identifier_self) identifier_self (identifier_tell) identifier_tell )attribute (argument_list )argument_list )call )argument_list )call )argument_list )call )expression_statement )block )if_statement (return_statement (identifier_res) identifier_res )return_statement )block )function_definition )module
Return an IntervalTree of unconsumed ranges, of the format (start, end] with the end value not being included
(module (function_definition (function_name__compute_hparam_info_from_values) function_name__compute_hparam_info_from_values (parameters (identifier_self) identifier_self (identifier_name) identifier_name (identifier_values) identifier_values )parameters (block (expression_statement (assignment (identifier_result) identifier_result (call (attribute (identifier_api_pb2) identifier_api_pb2 (identifier_HParamInfo) identifier_HParamInfo )attribute (argument_list (keyword_argument (identifier_name) identifier_name (identifier_name) identifier_name )keyword_argument (keyword_argument (identifier_type) identifier_type (attribute (identifier_api_pb2) identifier_api_pb2 (identifier_DATA_TYPE_UNSET) identifier_DATA_TYPE_UNSET )attribute )keyword_argument )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_distinct_values) identifier_distinct_values (call (identifier_set) identifier_set (generator_expression (call (identifier__protobuf_value_to_string) identifier__protobuf_value_to_string (argument_list (identifier_v) identifier_v )argument_list )call (for_in_clause (identifier_v) identifier_v (identifier_values) identifier_values )for_in_clause (if_clause (call (identifier__protobuf_value_type) identifier__protobuf_value_type (argument_list (identifier_v) identifier_v )argument_list )call )if_clause )generator_expression )call )assignment )expression_statement (for_statement (identifier_v) identifier_v (identifier_values) identifier_values (block (expression_statement (assignment (identifier_v_type) identifier_v_type (call (identifier__protobuf_value_type) identifier__protobuf_value_type (argument_list (identifier_v) identifier_v )argument_list )call )assignment )expression_statement (if_statement (not_operator (identifier_v_type) identifier_v_type )not_operator (block (continue_statement )continue_statement )block )if_statement (if_statement (comparison_operator (attribute (identifier_result) identifier_result (identifier_type) identifier_type )attribute (attribute (identifier_api_pb2) identifier_api_pb2 (identifier_DATA_TYPE_UNSET) identifier_DATA_TYPE_UNSET )attribute )comparison_operator (block (expression_statement (assignment (attribute (identifier_result) identifier_result (identifier_type) identifier_type )attribute (identifier_v_type) identifier_v_type )assignment )expression_statement )block (elif_clause (comparison_operator (attribute (identifier_result) identifier_result (identifier_type) identifier_type )attribute (identifier_v_type) identifier_v_type )comparison_operator (block (expression_statement (assignment (attribute (identifier_result) identifier_result (identifier_type) identifier_type )attribute (attribute (identifier_api_pb2) identifier_api_pb2 (identifier_DATA_TYPE_STRING) identifier_DATA_TYPE_STRING )attribute )assignment )expression_statement )block )elif_clause )if_statement (if_statement (comparison_operator (attribute (identifier_result) identifier_result (identifier_type) identifier_type )attribute (attribute (identifier_api_pb2) identifier_api_pb2 (identifier_DATA_TYPE_STRING) identifier_DATA_TYPE_STRING )attribute )comparison_operator (block (break_statement )break_statement )block )if_statement )block )for_statement (if_statement (comparison_operator (attribute (identifier_result) identifier_result (identifier_type) identifier_type )attribute (attribute (identifier_api_pb2) identifier_api_pb2 (identifier_DATA_TYPE_UNSET) identifier_DATA_TYPE_UNSET )attribute )comparison_operator (block (return_statement (None) None )return_statement )block )if_statement (if_statement (parenthesized_expression (boolean_operator (comparison_operator (attribute (identifier_result) identifier_result (identifier_type) identifier_type )attribute (attribute (identifier_api_pb2) identifier_api_pb2 (identifier_DATA_TYPE_STRING) identifier_DATA_TYPE_STRING )attribute )comparison_operator (comparison_operator (call (identifier_len) identifier_len (argument_list (identifier_distinct_values) identifier_distinct_values )argument_list )call (attribute (identifier_self) identifier_self (identifier__max_domain_discrete_len) identifier__max_domain_discrete_len )attribute )comparison_operator )boolean_operator )parenthesized_expression (block (expression_statement (call (attribute (attribute (identifier_result) identifier_result (identifier_domain_discrete) identifier_domain_discrete )attribute (identifier_extend) identifier_extend )attribute (argument_list (identifier_distinct_values) identifier_distinct_values )argument_list )call )expression_statement )block )if_statement (return_statement (identifier_result) identifier_result )return_statement )block )function_definition )module
Builds an HParamInfo message from the hparam name and list of values. Args: name: string. The hparam name. values: list of google.protobuf.Value messages. The list of values for the hparam. Returns: An api_pb2.HParamInfo message.
(module (function_definition (function_name_do_p) function_name_do_p (parameters (identifier_self) identifier_self (identifier_arg) identifier_arg )parameters (block (try_statement (block (expression_statement (call (attribute (identifier_self) identifier_self (identifier_message) identifier_message )attribute (argument_list (call (attribute (identifier_bdb) identifier_bdb (identifier_safe_repr) identifier_safe_repr )attribute (argument_list (call (attribute (identifier_self) identifier_self (identifier__getval) identifier__getval )attribute (argument_list (identifier_arg) identifier_arg )argument_list )call )argument_list )call )argument_list )call )expression_statement )block (except_clause (identifier_Exception) identifier_Exception (block (pass_statement )pass_statement )block )except_clause )try_statement )block )function_definition )module
p expression Print the value of the expression.
(module (function_definition (function_name_get_default_ca_certs) function_name_get_default_ca_certs (parameters )parameters (block (if_statement (not_operator (call (identifier_hasattr) identifier_hasattr (argument_list (identifier_get_default_ca_certs) identifier_get_default_ca_certs (string_'_path') string_'_path' )argument_list )call )not_operator (block (for_statement (identifier_path) identifier_path (call (identifier_get_default_ca_cert_paths) identifier_get_default_ca_cert_paths (argument_list )argument_list )call (block (if_statement (call (attribute (attribute (identifier_os) identifier_os (identifier_path) identifier_path )attribute (identifier_exists) identifier_exists )attribute (argument_list (identifier_path) identifier_path )argument_list )call (block (expression_statement (assignment (attribute (identifier_get_default_ca_certs) identifier_get_default_ca_certs (identifier__path) identifier__path )attribute (identifier_path) identifier_path )assignment )expression_statement (break_statement )break_statement )block )if_statement )block (else_clause (block (expression_statement (assignment (attribute (identifier_get_default_ca_certs) identifier_get_default_ca_certs (identifier__path) identifier__path )attribute (None) None )assignment )expression_statement )block )else_clause )for_statement )block )if_statement (return_statement (attribute (identifier_get_default_ca_certs) identifier_get_default_ca_certs (identifier__path) identifier__path )attribute )return_statement )block )function_definition )module
Try to find out system path with ca certificates. This path is cached and returned. If no path is found out, None is returned.
(module (function_definition (function_name_standard_lstm_lm_200) function_name_standard_lstm_lm_200 (parameters (default_parameter (identifier_dataset_name) identifier_dataset_name (None) None )default_parameter (default_parameter (identifier_vocab) identifier_vocab (None) None )default_parameter (default_parameter (identifier_pretrained) identifier_pretrained (False) False )default_parameter (default_parameter (identifier_ctx) identifier_ctx (call (identifier_cpu) identifier_cpu (argument_list )argument_list )call )default_parameter (default_parameter (identifier_root) identifier_root (call (attribute (attribute (identifier_os) identifier_os (identifier_path) identifier_path )attribute (identifier_join) identifier_join )attribute (argument_list (call (identifier_get_home_dir) identifier_get_home_dir (argument_list )argument_list )call (string_'models') string_'models' )argument_list )call )default_parameter (dictionary_splat_pattern (identifier_kwargs) identifier_kwargs )dictionary_splat_pattern )parameters (block (expression_statement (identifier_r) identifier_r )expression_statement (expression_statement (assignment (identifier_predefined_args) identifier_predefined_args (dictionary (pair (string_'embed_size') string_'embed_size' (integer_200) integer_200 )pair (pair (string_'hidden_size') string_'hidden_size' (integer_200) integer_200 )pair (pair (string_'mode') string_'mode' (string_'lstm') string_'lstm' )pair (pair (string_'num_layers') string_'num_layers' (integer_2) integer_2 )pair (pair (string_'tie_weights') string_'tie_weights' (True) True )pair (pair (string_'dropout') string_'dropout' (float_0.2) float_0.2 )pair )dictionary )assignment )expression_statement (expression_statement (assignment (identifier_mutable_args) identifier_mutable_args (list (string_'dropout') string_'dropout' )list )assignment )expression_statement (assert_statement (call (identifier_all) identifier_all (generator_expression (parenthesized_expression (boolean_operator (comparison_operator (identifier_k) identifier_k (identifier_kwargs) identifier_kwargs )comparison_operator (comparison_operator (identifier_k) identifier_k (identifier_mutable_args) identifier_mutable_args )comparison_operator )boolean_operator )parenthesized_expression (for_in_clause (identifier_k) identifier_k (identifier_predefined_args) identifier_predefined_args )for_in_clause )generator_expression )call (string_'Cannot override predefined model settings.') string_'Cannot override predefined model settings.' )assert_statement (expression_statement (call (attribute (identifier_predefined_args) identifier_predefined_args (identifier_update) identifier_update )attribute (argument_list (identifier_kwargs) identifier_kwargs )argument_list )call )expression_statement (return_statement (call (identifier__get_rnn_model) identifier__get_rnn_model (argument_list (identifier_StandardRNN) identifier_StandardRNN (string_'standard_lstm_lm_200') string_'standard_lstm_lm_200' (identifier_dataset_name) identifier_dataset_name (identifier_vocab) identifier_vocab (identifier_pretrained) identifier_pretrained (identifier_ctx) identifier_ctx (identifier_root) identifier_root (dictionary_splat (identifier_predefined_args) identifier_predefined_args )dictionary_splat )argument_list )call )return_statement )block )function_definition )module
r"""Standard 2-layer LSTM language model with tied embedding and output weights. Both embedding and hidden dimensions are 200. Parameters ---------- dataset_name : str or None, default None The dataset name on which the pre-trained model is trained. Options are 'wikitext-2'. If specified, then the returned vocabulary is extracted from the training set of the dataset. If None, then vocab is required, for specifying embedding weight size, and is directly returned. The pre-trained model achieves 108.25/102.26 ppl on Val and Test of wikitext-2 respectively. vocab : gluonnlp.Vocab or None, default None Vocabulary object to be used with the language model. Required when dataset_name is not specified. pretrained : bool, default False Whether to load the pre-trained weights for model. ctx : Context, default CPU The context in which to load the pre-trained weights. root : str, default '$MXNET_HOME/models' Location for keeping the model parameters. MXNET_HOME defaults to '~/.mxnet'. Returns ------- gluon.Block, gluonnlp.Vocab
(module (function_definition (function_name_append) function_name_append (parameters (identifier_self) identifier_self (identifier_key) identifier_key (default_parameter (identifier_value) identifier_value (None) None )default_parameter (default_parameter (identifier_dir) identifier_dir (False) False )default_parameter (default_parameter (identifier_ttl) identifier_ttl (None) None )default_parameter (default_parameter (identifier_timeout) identifier_timeout (None) None )default_parameter )parameters (block (return_statement (call (attribute (attribute (identifier_self) identifier_self (identifier_adapter) identifier_adapter )attribute (identifier_append) identifier_append )attribute (argument_list (identifier_key) identifier_key (identifier_value) identifier_value (keyword_argument (identifier_dir) identifier_dir (identifier_dir) identifier_dir )keyword_argument (keyword_argument (identifier_ttl) identifier_ttl (identifier_ttl) identifier_ttl )keyword_argument (keyword_argument (identifier_timeout) identifier_timeout (identifier_timeout) identifier_timeout )keyword_argument )argument_list )call )return_statement )block )function_definition )module
Creates a new automatically increasing key in the given directory key.
(module (function_definition (function_name_authnkey) function_name_authnkey (parameters (identifier_self) identifier_self )parameters (type (identifier_dict) identifier_dict )type (block (return_statement (dictionary_comprehension (pair (identifier_k) identifier_k (subscript (attribute (identifier_self) identifier_self (identifier__pubkey) identifier__pubkey )attribute (identifier_k) identifier_k )subscript )pair (for_in_clause (identifier_k) identifier_k (attribute (identifier_self) identifier_self (identifier__pubkey) identifier__pubkey )attribute )for_in_clause (if_clause (attribute (subscript (attribute (identifier_self) identifier_self (identifier__pubkey) identifier__pubkey )attribute (identifier_k) identifier_k )subscript (identifier_authn) identifier_authn )attribute )if_clause )dictionary_comprehension )return_statement )block )function_definition )module
Accessor for public keys marked as authentication keys, by identifier.
(module (function_definition (function_name_compute_eigenvalues) function_name_compute_eigenvalues (parameters (identifier_in_prefix) identifier_in_prefix (identifier_out_prefix) identifier_out_prefix )parameters (block (with_statement (with_clause (with_item (as_pattern (call (identifier_open) identifier_open (argument_list (binary_operator (identifier_out_prefix) identifier_out_prefix (string_".parameters") string_".parameters" )binary_operator (string_"w") string_"w" )argument_list )call (as_pattern_target (identifier_o_file) identifier_o_file )as_pattern_target )as_pattern )with_item )with_clause (block (print_statement (chevron (identifier_o_file) identifier_o_file )chevron (binary_operator (binary_operator (string_"genotypename: ") string_"genotypename: " (identifier_in_prefix) identifier_in_prefix )binary_operator (string_".bed") string_".bed" )binary_operator )print_statement (print_statement (chevron (identifier_o_file) identifier_o_file )chevron (binary_operator (binary_operator (string_"snpname: ") string_"snpname: " (identifier_in_prefix) identifier_in_prefix )binary_operator (string_".bim") string_".bim" )binary_operator )print_statement (print_statement (chevron (identifier_o_file) identifier_o_file )chevron (binary_operator (binary_operator (string_"indivname: ") string_"indivname: " (identifier_in_prefix) identifier_in_prefix )binary_operator (string_".fam") string_".fam" )binary_operator )print_statement (print_statement (chevron (identifier_o_file) identifier_o_file )chevron (binary_operator (binary_operator (string_"evecoutname: ") string_"evecoutname: " (identifier_out_prefix) identifier_out_prefix )binary_operator (string_".evec.txt") string_".evec.txt" )binary_operator )print_statement (print_statement (chevron (identifier_o_file) identifier_o_file )chevron (binary_operator (binary_operator (string_"evaloutname: ") string_"evaloutname: " (identifier_out_prefix) identifier_out_prefix )binary_operator (string_".eval.txt") string_".eval.txt" )binary_operator )print_statement (print_statement (chevron (identifier_o_file) identifier_o_file )chevron (string_"numoutlieriter: 0") string_"numoutlieriter: 0" )print_statement (print_statement (chevron (identifier_o_file) identifier_o_file )chevron (string_"altnormstyle: NO") string_"altnormstyle: NO" )print_statement )block )with_statement (expression_statement (assignment (identifier_command) identifier_command (list (string_"smartpca") string_"smartpca" (string_"-p") string_"-p" (binary_operator (identifier_out_prefix) identifier_out_prefix (string_".parameters") string_".parameters" )binary_operator )list )assignment )expression_statement (expression_statement (call (identifier_runCommand) identifier_runCommand (argument_list (identifier_command) identifier_command )argument_list )call )expression_statement )block )function_definition )module
Computes the Eigenvalues using smartpca from Eigensoft. :param in_prefix: the prefix of the input files. :param out_prefix: the prefix of the output files. :type in_prefix: str :type out_prefix: str Creates a "parameter file" used by smartpca and runs it.
(module (function_definition (function_name_get_hooks) function_name_get_hooks (parameters (identifier_self) identifier_self )parameters (block (if_statement (boolean_operator (comparison_operator (attribute (identifier_self) identifier_self (identifier___hooks) identifier___hooks )attribute (None) None )comparison_operator (comparison_operator (attribute (identifier_self) identifier_self (identifier_hooks_class_name) identifier_hooks_class_name )attribute (None) None )comparison_operator )boolean_operator (block (expression_statement (assignment (identifier_hooks_class) identifier_hooks_class (call (attribute (identifier_util) identifier_util (identifier_for_name) identifier_for_name )attribute (argument_list (attribute (identifier_self) identifier_self (identifier_hooks_class_name) identifier_hooks_class_name )attribute )argument_list )call )assignment )expression_statement (if_statement (not_operator (call (identifier_isinstance) identifier_isinstance (argument_list (identifier_hooks_class) identifier_hooks_class (identifier_type) identifier_type )argument_list )call )not_operator (block (raise_statement (call (identifier_ValueError) identifier_ValueError (argument_list (binary_operator (string_"hooks_class_name must refer to a class, got %s") string_"hooks_class_name must refer to a class, got %s" (attribute (call (identifier_type) identifier_type (argument_list (identifier_hooks_class) identifier_hooks_class )argument_list )call (identifier___name__) identifier___name__ )attribute )binary_operator )argument_list )call )raise_statement )block )if_statement (if_statement (not_operator (call (identifier_issubclass) identifier_issubclass (argument_list (identifier_hooks_class) identifier_hooks_class (attribute (identifier_hooks) identifier_hooks (identifier_Hooks) identifier_Hooks )attribute )argument_list )call )not_operator (block (raise_statement (call (identifier_ValueError) identifier_ValueError (argument_list (string_"hooks_class_name must refer to a hooks.Hooks subclass") string_"hooks_class_name must refer to a hooks.Hooks subclass" )argument_list )call )raise_statement )block )if_statement (expression_statement (assignment (attribute (identifier_self) identifier_self (identifier___hooks) identifier___hooks )attribute (call (identifier_hooks_class) identifier_hooks_class (argument_list (identifier_self) identifier_self )argument_list )call )assignment )expression_statement )block )if_statement (return_statement (attribute (identifier_self) identifier_self (identifier___hooks) identifier___hooks )attribute )return_statement )block )function_definition )module
Returns a hooks.Hooks class or None if no hooks class has been set.
(module (function_definition (function_name_install_module) function_name_install_module (parameters (identifier_self) identifier_self (default_parameter (identifier_target) identifier_target (None) None )default_parameter (default_parameter (identifier_package_manager) identifier_package_manager (None) None )default_parameter (default_parameter (identifier_install_optional) identifier_install_optional (False) False )default_parameter (default_parameter (identifier_production_only) identifier_production_only (False) False )default_parameter (default_parameter (identifier_force) identifier_force (False) False )default_parameter (default_parameter (identifier_node_paths) identifier_node_paths (None) None )default_parameter (default_parameter (identifier_frozen_lockfile) identifier_frozen_lockfile (None) None )default_parameter (default_parameter (identifier_workunit_name) identifier_workunit_name (None) None )default_parameter (default_parameter (identifier_workunit_labels) identifier_workunit_labels (None) None )default_parameter )parameters (block (expression_statement (assignment (identifier_package_manager) identifier_package_manager (boolean_operator (identifier_package_manager) identifier_package_manager (call (attribute (identifier_self) identifier_self (identifier_get_package_manager) identifier_get_package_manager )attribute (argument_list (keyword_argument (identifier_target) identifier_target (identifier_target) identifier_target )keyword_argument )argument_list )call )boolean_operator )assignment )expression_statement (expression_statement (assignment (identifier_command) identifier_command (call (attribute (identifier_package_manager) identifier_package_manager (identifier_install_module) identifier_install_module )attribute (argument_list (keyword_argument (identifier_install_optional) identifier_install_optional (identifier_install_optional) identifier_install_optional )keyword_argument (keyword_argument (identifier_force) identifier_force (identifier_force) identifier_force )keyword_argument (keyword_argument (identifier_production_only) identifier_production_only (identifier_production_only) identifier_production_only )keyword_argument (keyword_argument (identifier_node_paths) identifier_node_paths (identifier_node_paths) identifier_node_paths )keyword_argument (keyword_argument (identifier_frozen_lockfile) identifier_frozen_lockfile (identifier_frozen_lockfile) identifier_frozen_lockfile )keyword_argument )argument_list )call )assignment )expression_statement (return_statement (call (attribute (identifier_self) identifier_self (identifier__execute_command) identifier__execute_command )attribute (argument_list (identifier_command) identifier_command (keyword_argument (identifier_workunit_name) identifier_workunit_name (identifier_workunit_name) identifier_workunit_name )keyword_argument (keyword_argument (identifier_workunit_labels) identifier_workunit_labels (identifier_workunit_labels) identifier_workunit_labels )keyword_argument )argument_list )call )return_statement )block )function_definition )module
Installs node module using requested package_manager.
(module (function_definition (function_name_create_table) function_name_create_table (parameters (identifier_self) identifier_self (identifier_table_name) identifier_table_name (default_parameter (identifier_obj) identifier_obj (None) None )default_parameter (dictionary_splat_pattern (identifier_kwargs) identifier_kwargs )dictionary_splat_pattern )parameters (block (return_statement (call (attribute (attribute (identifier_self) identifier_self (identifier_client) identifier_client )attribute (identifier_create_table) identifier_create_table )attribute (argument_list (identifier_table_name) identifier_table_name (keyword_argument (identifier_obj) identifier_obj (identifier_obj) identifier_obj )keyword_argument (keyword_argument (identifier_database) identifier_database (attribute (identifier_self) identifier_self (identifier_name) identifier_name )attribute )keyword_argument (dictionary_splat (identifier_kwargs) identifier_kwargs )dictionary_splat )argument_list )call )return_statement )block )function_definition )module
Dispatch to ImpalaClient.create_table. See that function's docstring for more
(module (function_definition (function_name__set_timeouts) function_name__set_timeouts (parameters (identifier_self) identifier_self (identifier_timeouts) identifier_timeouts )parameters (block (expression_statement (assignment (tuple_pattern (identifier_send_timeout) identifier_send_timeout (identifier_recv_timeout) identifier_recv_timeout )tuple_pattern (tuple (None) None (None) None )tuple )assignment )expression_statement (try_statement (block (expression_statement (assignment (tuple_pattern (identifier_send_timeout) identifier_send_timeout (identifier_recv_timeout) identifier_recv_timeout )tuple_pattern (identifier_timeouts) identifier_timeouts )assignment )expression_statement )block (except_clause (identifier_TypeError) identifier_TypeError (block (raise_statement (call (identifier_EndpointError) identifier_EndpointError (argument_list (concatenated_string (string_'`timeouts` must be a pair of numbers (2, 3) which represent ') string_'`timeouts` must be a pair of numbers (2, 3) which represent ' (string_'the timeout values for send and receive respectively') string_'the timeout values for send and receive respectively' )concatenated_string )argument_list )call )raise_statement )block )except_clause )try_statement (if_statement (comparison_operator (identifier_send_timeout) identifier_send_timeout (None) None )comparison_operator (block (expression_statement (call (attribute (attribute (identifier_self) identifier_self (identifier_socket) identifier_socket )attribute (identifier_set_int_option) identifier_set_int_option )attribute (argument_list (attribute (identifier_nanomsg) identifier_nanomsg (identifier_SOL_SOCKET) identifier_SOL_SOCKET )attribute (attribute (identifier_nanomsg) identifier_nanomsg (identifier_SNDTIMEO) identifier_SNDTIMEO )attribute (identifier_send_timeout) identifier_send_timeout )argument_list )call )expression_statement )block )if_statement (if_statement (comparison_operator (identifier_recv_timeout) identifier_recv_timeout (None) None )comparison_operator (block (expression_statement (call (attribute (attribute (identifier_self) identifier_self (identifier_socket) identifier_socket )attribute (identifier_set_int_option) identifier_set_int_option )attribute (argument_list (attribute (identifier_nanomsg) identifier_nanomsg (identifier_SOL_SOCKET) identifier_SOL_SOCKET )attribute (attribute (identifier_nanomsg) identifier_nanomsg (identifier_RCVTIMEO) identifier_RCVTIMEO )attribute (identifier_recv_timeout) identifier_recv_timeout )argument_list )call )expression_statement )block )if_statement )block )function_definition )module
Set socket timeouts for send and receive respectively
(module (function_definition (function_name_create_roadmap_doc) function_name_create_roadmap_doc (parameters (identifier_dat) identifier_dat (identifier_opFile) identifier_opFile )parameters (block (expression_statement (assignment (identifier_op) identifier_op (call (identifier_format_title) identifier_format_title (argument_list (string_'Roadmap for AIKIF') string_'Roadmap for AIKIF' )argument_list )call )assignment )expression_statement (for_statement (identifier_h1) identifier_h1 (subscript (identifier_dat) identifier_dat (string_'projects') string_'projects' )subscript (block (expression_statement (augmented_assignment (identifier_op) identifier_op (call (identifier_format_h1) identifier_format_h1 (argument_list (identifier_h1) identifier_h1 )argument_list )call )augmented_assignment )expression_statement (if_statement (comparison_operator (subscript (identifier_dat) identifier_dat (identifier_h1) identifier_h1 )subscript (None) None )comparison_operator (block (expression_statement (augmented_assignment (identifier_op) identifier_op (string_'(No details)\n') string_'(No details)\n' )augmented_assignment )expression_statement )block (else_clause (block (for_statement (identifier_h2) identifier_h2 (subscript (identifier_dat) identifier_dat (identifier_h1) identifier_h1 )subscript (block (expression_statement (augmented_assignment (identifier_op) identifier_op (binary_operator (string_'\n') string_'\n' (call (identifier_format_h2) identifier_format_h2 (argument_list (identifier_h2) identifier_h2 )argument_list )call )binary_operator )augmented_assignment )expression_statement (if_statement (comparison_operator (subscript (subscript (identifier_dat) identifier_dat (identifier_h1) identifier_h1 )subscript (identifier_h2) identifier_h2 )subscript (None) None )comparison_operator (block (expression_statement (augmented_assignment (identifier_op) identifier_op (string_'(blank text)\n') string_'(blank text)\n' )augmented_assignment )expression_statement )block (else_clause (block (for_statement (identifier_txt) identifier_txt (subscript (subscript (identifier_dat) identifier_dat (identifier_h1) identifier_h1 )subscript (identifier_h2) identifier_h2 )subscript (block (expression_statement (augmented_assignment (identifier_op) identifier_op (binary_operator (binary_operator (string_' - ') string_' - ' (identifier_txt) identifier_txt )binary_operator (string_'\n') string_'\n' )binary_operator )augmented_assignment )expression_statement )block )for_statement )block )else_clause )if_statement )block )for_statement )block )else_clause )if_statement (expression_statement (augmented_assignment (identifier_op) identifier_op (string_'\n') string_'\n' )augmented_assignment )expression_statement )block )for_statement (with_statement (with_clause (with_item (as_pattern (call (identifier_open) identifier_open (argument_list (identifier_opFile) identifier_opFile (string_'w') string_'w' )argument_list )call (as_pattern_target (identifier_f) identifier_f )as_pattern_target )as_pattern )with_item )with_clause (block (expression_statement (call (attribute (identifier_f) identifier_f (identifier_write) identifier_write )attribute (argument_list (identifier_op) identifier_op )argument_list )call )expression_statement )block )with_statement )block )function_definition )module
takes a dictionary read from a yaml file and converts it to the roadmap documentation
(module (function_definition (function_name_join_struct_arrays) function_name_join_struct_arrays (parameters (identifier_arrays) identifier_arrays )parameters (block (expression_statement (assignment (identifier_sizes) identifier_sizes (call (attribute (identifier_np) identifier_np (identifier_array) identifier_array )attribute (argument_list (list_comprehension (attribute (identifier_a) identifier_a (identifier_itemsize) identifier_itemsize )attribute (for_in_clause (identifier_a) identifier_a (identifier_arrays) identifier_arrays )for_in_clause )list_comprehension )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_offsets) identifier_offsets (subscript (attribute (identifier_np) identifier_np (identifier_r_) identifier_r_ )attribute (integer_0) integer_0 (call (attribute (identifier_sizes) identifier_sizes (identifier_cumsum) identifier_cumsum )attribute (argument_list )argument_list )call )subscript )assignment )expression_statement (expression_statement (assignment (identifier_shape) identifier_shape (attribute (subscript (identifier_arrays) identifier_arrays (integer_0) integer_0 )subscript (identifier_shape) identifier_shape )attribute )assignment )expression_statement (expression_statement (assignment (identifier_joint) identifier_joint (call (attribute (identifier_np) identifier_np (identifier_empty) identifier_empty )attribute (argument_list (binary_operator (identifier_shape) identifier_shape (tuple (subscript (identifier_offsets) identifier_offsets (unary_operator (integer_1) integer_1 )unary_operator )subscript )tuple )binary_operator (keyword_argument (identifier_dtype) identifier_dtype (attribute (identifier_np) identifier_np (identifier_uint8) identifier_uint8 )attribute )keyword_argument )argument_list )call )assignment )expression_statement (for_statement (pattern_list (identifier_a) identifier_a (identifier_size) identifier_size (identifier_offset) identifier_offset )pattern_list (call (identifier_zip) identifier_zip (argument_list (identifier_arrays) identifier_arrays (identifier_sizes) identifier_sizes (identifier_offsets) identifier_offsets )argument_list )call (block (expression_statement (assignment (subscript (identifier_joint) identifier_joint (ellipsis_...) ellipsis_... (slice (identifier_offset) identifier_offset (colon) colon (binary_operator (identifier_offset) identifier_offset (identifier_size) identifier_size )binary_operator )slice )subscript (call (attribute (call (attribute (call (attribute (identifier_np) identifier_np (identifier_atleast_1d) identifier_atleast_1d )attribute (argument_list (identifier_a) identifier_a )argument_list )call (identifier_view) identifier_view )attribute (argument_list (attribute (identifier_np) identifier_np (identifier_uint8) identifier_uint8 )attribute )argument_list )call (identifier_reshape) identifier_reshape )attribute (argument_list (binary_operator (identifier_shape) identifier_shape (tuple (identifier_size) identifier_size )tuple )binary_operator )argument_list )call )assignment )expression_statement )block )for_statement (expression_statement (assignment (identifier_dtype) identifier_dtype (call (identifier_sum) identifier_sum (argument_list (generator_expression (attribute (attribute (identifier_a) identifier_a (identifier_dtype) identifier_dtype )attribute (identifier_descr) identifier_descr )attribute (for_in_clause (identifier_a) identifier_a (identifier_arrays) identifier_arrays )for_in_clause )generator_expression (list )list )argument_list )call )assignment )expression_statement (return_statement (call (attribute (call (attribute (identifier_joint) identifier_joint (identifier_ravel) identifier_ravel )attribute (argument_list )argument_list )call (identifier_view) identifier_view )attribute (argument_list (identifier_dtype) identifier_dtype )argument_list )call )return_statement )block )function_definition )module
Takes a list of possibly structured arrays, concatenates their dtypes, and returns one big array with that dtype. Does the inverse of ``separate_struct_array``. :param list arrays: List of ``np.ndarray``s
(module (function_definition (function_name_estimate_band_connection) function_name_estimate_band_connection (parameters (identifier_prev_eigvecs) identifier_prev_eigvecs (identifier_eigvecs) identifier_eigvecs (identifier_prev_band_order) identifier_prev_band_order )parameters (block (expression_statement (assignment (identifier_metric) identifier_metric (call (attribute (identifier_np) identifier_np (identifier_abs) identifier_abs )attribute (argument_list (call (attribute (identifier_np) identifier_np (identifier_dot) identifier_dot )attribute (argument_list (attribute (call (attribute (identifier_prev_eigvecs) identifier_prev_eigvecs (identifier_conjugate) identifier_conjugate )attribute (argument_list )argument_list )call (identifier_T) identifier_T )attribute (identifier_eigvecs) identifier_eigvecs )argument_list )call )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_connection_order) identifier_connection_order (list )list )assignment )expression_statement (for_statement (identifier_overlaps) identifier_overlaps (identifier_metric) identifier_metric (block (expression_statement (assignment (identifier_maxval) identifier_maxval (integer_0) integer_0 )assignment )expression_statement (for_statement (identifier_i) identifier_i (call (identifier_reversed) identifier_reversed (argument_list (call (identifier_range) identifier_range (argument_list (call (identifier_len) identifier_len (argument_list (identifier_metric) identifier_metric )argument_list )call )argument_list )call )argument_list )call (block (expression_statement (assignment (identifier_val) identifier_val (subscript (identifier_overlaps) identifier_overlaps (identifier_i) identifier_i )subscript )assignment )expression_statement (if_statement (comparison_operator (identifier_i) identifier_i (identifier_connection_order) identifier_connection_order )comparison_operator (block (continue_statement )continue_statement )block )if_statement (if_statement (comparison_operator (identifier_val) identifier_val (identifier_maxval) identifier_maxval )comparison_operator (block (expression_statement (assignment (identifier_maxval) identifier_maxval (identifier_val) identifier_val )assignment )expression_statement (expression_statement (assignment (identifier_maxindex) identifier_maxindex (identifier_i) identifier_i )assignment )expression_statement )block )if_statement )block )for_statement (expression_statement (call (attribute (identifier_connection_order) identifier_connection_order (identifier_append) identifier_append )attribute (argument_list (identifier_maxindex) identifier_maxindex )argument_list )call )expression_statement )block )for_statement (expression_statement (assignment (identifier_band_order) identifier_band_order (list_comprehension (subscript (identifier_connection_order) identifier_connection_order (identifier_x) identifier_x )subscript (for_in_clause (identifier_x) identifier_x (identifier_prev_band_order) identifier_prev_band_order )for_in_clause )list_comprehension )assignment )expression_statement (return_statement (identifier_band_order) identifier_band_order )return_statement )block )function_definition )module
A function to order the phonon eigenvectors taken from phonopy
(module (function_definition (function_name_write) function_name_write (parameters (identifier_self) identifier_self (identifier_datapoint) identifier_datapoint )parameters (block (if_statement (not_operator (call (identifier_isinstance) identifier_isinstance (argument_list (identifier_datapoint) identifier_datapoint (identifier_DataPoint) identifier_DataPoint )argument_list )call )not_operator (block (raise_statement (call (identifier_TypeError) identifier_TypeError (argument_list (string_"First argument must be a DataPoint object") string_"First argument must be a DataPoint object" )argument_list )call )raise_statement )block )if_statement (expression_statement (assignment (attribute (identifier_datapoint) identifier_datapoint (identifier__stream_id) identifier__stream_id )attribute (call (attribute (identifier_self) identifier_self (identifier_get_stream_id) identifier_get_stream_id )attribute (argument_list )argument_list )call )assignment )expression_statement (if_statement (boolean_operator (comparison_operator (attribute (identifier_self) identifier_self (identifier__cached_data) identifier__cached_data )attribute (None) None )comparison_operator (comparison_operator (call (attribute (identifier_datapoint) identifier_datapoint (identifier_get_data_type) identifier_get_data_type )attribute (argument_list )argument_list )call (None) None )comparison_operator )boolean_operator (block (expression_statement (assignment (attribute (identifier_datapoint) identifier_datapoint (identifier__data_type) identifier__data_type )attribute (call (attribute (identifier_self) identifier_self (identifier_get_data_type) identifier_get_data_type )attribute (argument_list )argument_list )call )assignment )expression_statement )block )if_statement (expression_statement (call (attribute (attribute (identifier_self) identifier_self (identifier__conn) identifier__conn )attribute (identifier_post) identifier_post )attribute (argument_list (call (attribute (string_"/ws/DataPoint/{}") string_"/ws/DataPoint/{}" (identifier_format) identifier_format )attribute (argument_list (call (attribute (identifier_self) identifier_self (identifier_get_stream_id) identifier_get_stream_id )attribute (argument_list )argument_list )call )argument_list )call (call (attribute (identifier_datapoint) identifier_datapoint (identifier_to_xml) identifier_to_xml )attribute (argument_list )argument_list )call )argument_list )call )expression_statement )block )function_definition )module
Write some raw data to a stream using the DataPoint API This method will mutate the datapoint provided to populate it with information available from the stream as it is available (but without making any new HTTP requests). For instance, we will add in information about the stream data type if it is available so that proper type conversion happens. Values already set on the datapoint will not be overridden (except for path) :param DataPoint datapoint: The :class:`.DataPoint` that should be written to Device Cloud
(module (function_definition (function_name__resource) function_name__resource (parameters (identifier_resource) identifier_resource (typed_default_parameter (identifier_pretty) identifier_pretty (type (identifier_bool) identifier_bool )type (None) None )typed_default_parameter (dictionary_splat_pattern (identifier_data) identifier_data )dictionary_splat_pattern )parameters (block (expression_statement (assignment (identifier_data) identifier_data (call (identifier_clean_data) identifier_clean_data (argument_list (identifier_data) identifier_data )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_ctx) identifier_ctx (call (attribute (identifier_click) identifier_click (identifier_get_current_context) identifier_get_current_context )attribute (argument_list )argument_list )call )assignment )expression_statement (if_statement (call (attribute (attribute (identifier_ctx) identifier_ctx (identifier_obj) identifier_obj )attribute (identifier_get) identifier_get )attribute (argument_list (string_"env_prefix") string_"env_prefix" )argument_list )call (block (expression_statement (assignment (subscript (identifier_data) identifier_data (string_"env_prefix") string_"env_prefix" )subscript (subscript (attribute (identifier_ctx) identifier_ctx (identifier_obj) identifier_obj )attribute (string_"env_prefix") string_"env_prefix" )subscript )assignment )expression_statement )block )if_statement (expression_statement (assignment (identifier_rsp) identifier_rsp (call (identifier_resource) identifier_resource (argument_list (dictionary_splat (identifier_data) identifier_data )dictionary_splat )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_dump) identifier_dump (conditional_expression (call (identifier_partial) identifier_partial (argument_list (attribute (identifier_json) identifier_json (identifier_dumps) identifier_dumps )attribute (keyword_argument (identifier_indent) identifier_indent (integer_4) integer_4 )keyword_argument )argument_list )call (identifier_pretty) identifier_pretty (call (identifier_partial) identifier_partial (argument_list (attribute (identifier_json) identifier_json (identifier_dumps) identifier_dumps )attribute )argument_list )call )conditional_expression )assignment )expression_statement (expression_statement (call (attribute (identifier_click) identifier_click (identifier_echo) identifier_echo )attribute (argument_list (call (identifier_dump) identifier_dump (argument_list (identifier_rsp) identifier_rsp )argument_list )call )argument_list )call )expression_statement )block )function_definition )module
The callback func that will be hooked to the generic resource commands
(module (function_definition (function_name_ascolumn) function_name_ascolumn (parameters (identifier_x) identifier_x (default_parameter (identifier_dtype) identifier_dtype (None) None )default_parameter )parameters (block (expression_statement (assignment (identifier_x) identifier_x (call (identifier_asarray) identifier_asarray (argument_list (identifier_x) identifier_x (identifier_dtype) identifier_dtype )argument_list )call )assignment )expression_statement (return_statement (conditional_expression (identifier_x) identifier_x (comparison_operator (call (identifier_len) identifier_len (argument_list (attribute (identifier_x) identifier_x (identifier_shape) identifier_shape )attribute )argument_list )call (integer_2) integer_2 )comparison_operator (call (attribute (identifier_x) identifier_x (identifier_reshape) identifier_reshape )attribute (argument_list (call (identifier_len) identifier_len (argument_list (identifier_x) identifier_x )argument_list )call (integer_1) integer_1 )argument_list )call )conditional_expression )return_statement )block )function_definition )module
Convert ``x`` into a ``column``-type ``numpy.ndarray``.
(module (function_definition (function_name_get_next) function_name_get_next (parameters (identifier_self) identifier_self )parameters (block (expression_statement (augmented_assignment (attribute (identifier_self) identifier_self (identifier__counter_curr) identifier__counter_curr )attribute (integer_1) integer_1 )augmented_assignment )expression_statement (expression_statement (assignment (identifier_suffix) identifier_suffix (binary_operator (attribute (identifier_self) identifier_self (identifier__separator) identifier__separator )attribute (binary_operator (string_"%s") string_"%s" (call (identifier_str) identifier_str (argument_list (attribute (identifier_self) identifier_self (identifier__counter_curr) identifier__counter_curr )attribute )argument_list )call )binary_operator )binary_operator )assignment )expression_statement (return_statement (binary_operator (attribute (identifier_self) identifier_self (identifier__base_name) identifier__base_name )attribute (identifier_suffix) identifier_suffix )binary_operator )return_statement )block )function_definition )module
Return next name.
(module (function_definition (function_name_insert) function_name_insert (parameters (identifier_self) identifier_self (identifier_rectangle) identifier_rectangle )parameters (block (expression_statement (assignment (identifier_rectangle) identifier_rectangle (call (attribute (identifier_np) identifier_np (identifier_asanyarray) identifier_asanyarray )attribute (argument_list (identifier_rectangle) identifier_rectangle (keyword_argument (identifier_dtype) identifier_dtype (attribute (identifier_np) identifier_np (identifier_float64) identifier_float64 )attribute )keyword_argument )argument_list )call )assignment )expression_statement (for_statement (identifier_child) identifier_child (attribute (identifier_self) identifier_self (identifier_child) identifier_child )attribute (block (if_statement (comparison_operator (identifier_child) identifier_child (None) None )comparison_operator (block (expression_statement (assignment (identifier_attempt) identifier_attempt (call (attribute (identifier_child) identifier_child (identifier_insert) identifier_insert )attribute (argument_list (identifier_rectangle) identifier_rectangle )argument_list )call )assignment )expression_statement (if_statement (comparison_operator (identifier_attempt) identifier_attempt (None) None )comparison_operator (block (return_statement (identifier_attempt) identifier_attempt )return_statement )block )if_statement )block )if_statement )block )for_statement (if_statement (attribute (identifier_self) identifier_self (identifier_occupied) identifier_occupied )attribute (block (return_statement (None) None )return_statement )block )if_statement (expression_statement (assignment (identifier_size_test) identifier_size_test (binary_operator (attribute (identifier_self) identifier_self (identifier_extents) identifier_extents )attribute (identifier_rectangle) identifier_rectangle )binary_operator )assignment )expression_statement (if_statement (call (attribute (identifier_np) identifier_np (identifier_any) identifier_any )attribute (argument_list (comparison_operator (identifier_size_test) identifier_size_test (unary_operator (attribute (identifier_tol) identifier_tol (identifier_zero) identifier_zero )attribute )unary_operator )comparison_operator )argument_list )call (block (return_statement (None) None )return_statement )block )if_statement (expression_statement (assignment (attribute (identifier_self) identifier_self (identifier_occupied) identifier_occupied )attribute (True) True )assignment )expression_statement (if_statement (call (attribute (identifier_np) identifier_np (identifier_all) identifier_all )attribute (argument_list (comparison_operator (identifier_size_test) identifier_size_test (attribute (identifier_tol) identifier_tol (identifier_zero) identifier_zero )attribute )comparison_operator )argument_list )call (block (return_statement (subscript (attribute (identifier_self) identifier_self (identifier_bounds) identifier_bounds )attribute (slice (integer_0) integer_0 (colon) colon (integer_2) integer_2 )slice )subscript )return_statement )block )if_statement (expression_statement (assignment (identifier_vertical) identifier_vertical (comparison_operator (subscript (identifier_size_test) identifier_size_test (integer_0) integer_0 )subscript (subscript (identifier_size_test) identifier_size_test (integer_1) integer_1 )subscript )comparison_operator )assignment )expression_statement (expression_statement (assignment (identifier_length) identifier_length (subscript (identifier_rectangle) identifier_rectangle (call (identifier_int) identifier_int (argument_list (not_operator (identifier_vertical) identifier_vertical )not_operator )argument_list )call )subscript )assignment )expression_statement (expression_statement (assignment (identifier_child_bounds) identifier_child_bounds (call (attribute (identifier_self) identifier_self (identifier_split) identifier_split )attribute (argument_list (identifier_length) identifier_length (identifier_vertical) identifier_vertical )argument_list )call )assignment )expression_statement (expression_statement (assignment (subscript (attribute (identifier_self) identifier_self (identifier_child) identifier_child )attribute (integer_0) integer_0 )subscript (call (identifier_RectangleBin) identifier_RectangleBin (argument_list (keyword_argument (identifier_bounds) identifier_bounds (subscript (identifier_child_bounds) identifier_child_bounds (integer_0) integer_0 )subscript )keyword_argument )argument_list )call )assignment )expression_statement (expression_statement (assignment (subscript (attribute (identifier_self) identifier_self (identifier_child) identifier_child )attribute (integer_1) integer_1 )subscript (call (identifier_RectangleBin) identifier_RectangleBin (argument_list (keyword_argument (identifier_bounds) identifier_bounds (subscript (identifier_child_bounds) identifier_child_bounds (integer_1) integer_1 )subscript )keyword_argument )argument_list )call )assignment )expression_statement (return_statement (call (attribute (subscript (attribute (identifier_self) identifier_self (identifier_child) identifier_child )attribute (integer_0) integer_0 )subscript (identifier_insert) identifier_insert )attribute (argument_list (identifier_rectangle) identifier_rectangle )argument_list )call )return_statement )block )function_definition )module
Insert a rectangle into the bin. Parameters ------------- rectangle: (2,) float, size of rectangle to insert
(module (function_definition (function_name_make_int) function_name_make_int (parameters (identifier_value) identifier_value (default_parameter (identifier_missing) identifier_missing (unary_operator (integer_1) integer_1 )unary_operator )default_parameter )parameters (block (if_statement (call (identifier_isinstance) identifier_isinstance (argument_list (identifier_value) identifier_value (attribute (identifier_six) identifier_six (identifier_string_types) identifier_string_types )attribute )argument_list )call (block (if_statement (not_operator (call (attribute (identifier_value) identifier_value (identifier_strip) identifier_strip )attribute (argument_list )argument_list )call )not_operator (block (return_statement (identifier_missing) identifier_missing )return_statement )block )if_statement )block (elif_clause (comparison_operator (identifier_value) identifier_value (None) None )comparison_operator (block (return_statement (identifier_missing) identifier_missing )return_statement )block )elif_clause )if_statement (return_statement (call (identifier_int) identifier_int (argument_list (identifier_value) identifier_value )argument_list )call )return_statement )block )function_definition )module
Convert string value to long, '' to missing
(module (function_definition (function_name_separator) function_name_separator (parameters (identifier_self) identifier_self (list_splat_pattern (identifier_args) identifier_args )list_splat_pattern (dictionary_splat_pattern (identifier_kwargs) identifier_kwargs )dictionary_splat_pattern )parameters (block (expression_statement (assignment (identifier_levelOverride) identifier_levelOverride (boolean_operator (call (attribute (identifier_kwargs) identifier_kwargs (identifier_get) identifier_get )attribute (argument_list (string_'level') string_'level' )argument_list )call (attribute (identifier_self) identifier_self (identifier__lastlevel) identifier__lastlevel )attribute )boolean_operator )assignment )expression_statement (expression_statement (call (attribute (identifier_self) identifier_self (identifier__log) identifier__log )attribute (argument_list (identifier_levelOverride) identifier_levelOverride (string_'') string_'' (string_'separator') string_'separator' (identifier_args) identifier_args (identifier_kwargs) identifier_kwargs )argument_list )call )expression_statement )block )function_definition )module
Prints a separator to the log. This can be used to separate blocks of log messages. The separator will default its log level to the level of the last message printed unless specified with the level= kwarg. The length and type of the separator string is determined by the current style. See ``setStyle``
(module (function_definition (function_name_create_paired_device) function_name_create_paired_device (parameters (identifier_self) identifier_self (identifier_dev_id) identifier_dev_id (identifier_agent_path) identifier_agent_path (identifier_capability) identifier_capability (identifier_cb_notify_device) identifier_cb_notify_device (identifier_cb_notify_error) identifier_cb_notify_error )parameters (block (return_statement (call (attribute (attribute (identifier_self) identifier_self (identifier__interface) identifier__interface )attribute (identifier_CreatePairedDevice) identifier_CreatePairedDevice )attribute (argument_list (identifier_dev_id) identifier_dev_id (identifier_agent_path) identifier_agent_path (identifier_capability) identifier_capability (keyword_argument (identifier_reply_handler) identifier_reply_handler (identifier_cb_notify_device) identifier_cb_notify_device )keyword_argument (keyword_argument (identifier_error_handler) identifier_error_handler (identifier_cb_notify_error) identifier_cb_notify_error )keyword_argument )argument_list )call )return_statement )block )function_definition )module
Creates a new object path for a remote device. This method will connect to the remote device and retrieve all SDP records and then initiate the pairing. If a previously :py:meth:`create_device` was used successfully, this method will only initiate the pairing. Compared to :py:meth:`create_device` this method will fail if the pairing already exists, but not if the object path already has been created. This allows applications to use :py:meth:`create_device` first and then, if needed, use :py:meth:`create_paired_device` to initiate pairing. The agent object path is assumed to reside within the process (D-Bus connection instance) that calls this method. No separate registration procedure is needed for it and it gets automatically released once the pairing operation is complete. :param str dev_id: New device MAC address create e.g., '11:22:33:44:55:66' :param str agent_path: Path used when creating the bluetooth agent e.g., '/test/agent' :param str capability: Pairing agent capability e.g., 'DisplayYesNo', etc :param func cb_notify_device: Callback on success. The callback is called with the new device's object path as an argument. :param func cb_notify_error: Callback on error. The callback is called with the error reason. :return: :raises dbus.Exception: org.bluez.Error.InvalidArguments :raises dbus.Exception: org.bluez.Error.Failed
(module (function_definition (function_name_get_request_headers) function_name_get_request_headers (parameters (identifier_self) identifier_self (list_splat_pattern (identifier_args) identifier_args )list_splat_pattern (dictionary_splat_pattern (identifier_kwds) identifier_kwds )dictionary_splat_pattern )parameters (block (if_statement (attribute (identifier_self) identifier_self (identifier_request_headers) identifier_request_headers )attribute (block (return_statement (call (attribute (identifier_self) identifier_self (identifier__unpack_headers) identifier__unpack_headers )attribute (argument_list (attribute (identifier_self) identifier_self (identifier_request_headers) identifier_request_headers )attribute )argument_list )call )return_statement )block )if_statement )block )function_definition )module
A convenience method for obtaining the headers that were sent to the S3 server. The AWS S3 API depends upon setting headers. This method is provided as a convenience for debugging issues with the S3 communications.
(module (function_definition (function_name__pixel_to_tile) function_name__pixel_to_tile (parameters (typed_parameter (identifier_x) identifier_x (type (identifier_float) identifier_float )type )typed_parameter (typed_parameter (identifier_y) identifier_y (type (identifier_float) identifier_float )type )typed_parameter )parameters (type (generic_type (identifier_Tuple) identifier_Tuple (type_parameter (type (identifier_float) identifier_float )type (type (identifier_float) identifier_float )type )type_parameter )generic_type )type (block (expression_statement (assignment (identifier_xy) identifier_xy (call (attribute (attribute (identifier_tcod) identifier_tcod (identifier_ffi) identifier_ffi )attribute (identifier_new) identifier_new )attribute (argument_list (string_"double[2]") string_"double[2]" (tuple (identifier_x) identifier_x (identifier_y) identifier_y )tuple )argument_list )call )assignment )expression_statement (expression_statement (call (attribute (attribute (identifier_tcod) identifier_tcod (identifier_lib) identifier_lib )attribute (identifier_TCOD_sys_pixel_to_tile) identifier_TCOD_sys_pixel_to_tile )attribute (argument_list (identifier_xy) identifier_xy (binary_operator (identifier_xy) identifier_xy (integer_1) integer_1 )binary_operator )argument_list )call )expression_statement (return_statement (expression_list (subscript (identifier_xy) identifier_xy (integer_0) integer_0 )subscript (subscript (identifier_xy) identifier_xy (integer_1) integer_1 )subscript )expression_list )return_statement )block )function_definition )module
Convert pixel coordinates to tile coordinates.
(module (function_definition (function_name_post_slack_message) function_name_post_slack_message (parameters (default_parameter (identifier_message) identifier_message (None) None )default_parameter (default_parameter (identifier_channel) identifier_channel (None) None )default_parameter (default_parameter (identifier_username) identifier_username (None) None )default_parameter (default_parameter (identifier_icon_emoji) identifier_icon_emoji (None) None )default_parameter )parameters (block (expression_statement (call (attribute (identifier_LOG) identifier_LOG (identifier_debug) identifier_debug )attribute (argument_list (string_'Slack Channel: %s\nSlack Message: %s') string_'Slack Channel: %s\nSlack Message: %s' (identifier_channel) identifier_channel (identifier_message) identifier_message )argument_list )call )expression_statement (expression_statement (assignment (identifier_slack) identifier_slack (call (attribute (identifier_slacker) identifier_slacker (identifier_Slacker) identifier_Slacker )attribute (argument_list (identifier_SLACK_TOKEN) identifier_SLACK_TOKEN )argument_list )call )assignment )expression_statement (try_statement (block (expression_statement (call (attribute (attribute (identifier_slack) identifier_slack (identifier_chat) identifier_chat )attribute (identifier_post_message) identifier_post_message )attribute (argument_list (keyword_argument (identifier_channel) identifier_channel (identifier_channel) identifier_channel )keyword_argument (keyword_argument (identifier_text) identifier_text (identifier_message) identifier_message )keyword_argument (keyword_argument (identifier_username) identifier_username (identifier_username) identifier_username )keyword_argument (keyword_argument (identifier_icon_emoji) identifier_icon_emoji (identifier_icon_emoji) identifier_icon_emoji )keyword_argument )argument_list )call )expression_statement (expression_statement (call (attribute (identifier_LOG) identifier_LOG (identifier_info) identifier_info )attribute (argument_list (string_'Message posted to %s') string_'Message posted to %s' (identifier_channel) identifier_channel )argument_list )call )expression_statement )block (except_clause (attribute (identifier_slacker) identifier_slacker (identifier_Error) identifier_Error )attribute (block (expression_statement (call (attribute (identifier_LOG) identifier_LOG (identifier_info) identifier_info )attribute (argument_list (string_"error posted message to %s") string_"error posted message to %s" (identifier_channel) identifier_channel )argument_list )call )expression_statement )block )except_clause )try_statement )block )function_definition )module
Format the message and post to the appropriate slack channel. Args: message (str): Message to post to slack channel (str): Desired channel. Must start with #
(module (function_definition (function_name_getAllReadGroupSets) function_name_getAllReadGroupSets (parameters (identifier_self) identifier_self )parameters (block (for_statement (identifier_dataset) identifier_dataset (call (attribute (identifier_self) identifier_self (identifier_getAllDatasets) identifier_getAllDatasets )attribute (argument_list )argument_list )call (block (expression_statement (assignment (identifier_iterator) identifier_iterator (call (attribute (attribute (identifier_self) identifier_self (identifier__client) identifier__client )attribute (identifier_search_read_group_sets) identifier_search_read_group_sets )attribute (argument_list (keyword_argument (identifier_dataset_id) identifier_dataset_id (attribute (identifier_dataset) identifier_dataset (identifier_id) identifier_id )attribute )keyword_argument )argument_list )call )assignment )expression_statement (for_statement (identifier_readGroupSet) identifier_readGroupSet (identifier_iterator) identifier_iterator (block (expression_statement (yield (identifier_readGroupSet) identifier_readGroupSet )yield )expression_statement )block )for_statement )block )for_statement )block )function_definition )module
Returns all readgroup sets on the server.
(module (function_definition (function_name_add_field_like) function_name_add_field_like (parameters (identifier_self) identifier_self (identifier_name) identifier_name (identifier_like_array) identifier_like_array )parameters (block (expression_statement (assignment (identifier_new_shape) identifier_new_shape (call (identifier_list) identifier_list (argument_list (attribute (identifier_like_array) identifier_like_array (identifier_shape) identifier_shape )attribute )argument_list )call )assignment )expression_statement (expression_statement (assignment (subscript (identifier_new_shape) identifier_new_shape (integer_0) integer_0 )subscript (call (identifier_len) identifier_len (argument_list (identifier_self) identifier_self )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_new_data) identifier_new_data (call (attribute (identifier_ma) identifier_ma (identifier_empty) identifier_empty )attribute (argument_list (identifier_new_shape) identifier_new_shape (attribute (identifier_like_array) identifier_like_array (identifier_dtype) identifier_dtype )attribute )argument_list )call )assignment )expression_statement (expression_statement (assignment (attribute (identifier_new_data) identifier_new_data (identifier_mask) identifier_mask )attribute (True) True )assignment )expression_statement (expression_statement (call (attribute (identifier_self) identifier_self (identifier_add_field) identifier_add_field )attribute (argument_list (identifier_name) identifier_name (identifier_new_data) identifier_new_data )argument_list )call )expression_statement )block )function_definition )module
Add a new field to the Datamat with the dtype of the like_array and the shape of the like_array except for the first dimension which will be instead the field-length of this Datamat.
(module (function_definition (function_name__make_ssh_forward_server) function_name__make_ssh_forward_server (parameters (identifier_self) identifier_self (identifier_remote_address) identifier_remote_address (identifier_local_bind_address) identifier_local_bind_address )parameters (block (expression_statement (assignment (identifier__Handler) identifier__Handler (call (attribute (identifier_self) identifier_self (identifier__make_ssh_forward_handler_class) identifier__make_ssh_forward_handler_class )attribute (argument_list (identifier_remote_address) identifier_remote_address )argument_list )call )assignment )expression_statement (try_statement (block (if_statement (call (identifier_isinstance) identifier_isinstance (argument_list (identifier_local_bind_address) identifier_local_bind_address (identifier_string_types) identifier_string_types )argument_list )call (block (expression_statement (assignment (identifier_forward_maker_class) identifier_forward_maker_class (attribute (identifier_self) identifier_self (identifier__make_unix_ssh_forward_server_class) identifier__make_unix_ssh_forward_server_class )attribute )assignment )expression_statement )block (else_clause (block (expression_statement (assignment (identifier_forward_maker_class) identifier_forward_maker_class (attribute (identifier_self) identifier_self (identifier__make_ssh_forward_server_class) identifier__make_ssh_forward_server_class )attribute )assignment )expression_statement )block )else_clause )if_statement (expression_statement (assignment (identifier__Server) identifier__Server (call (identifier_forward_maker_class) identifier_forward_maker_class (argument_list (identifier_remote_address) identifier_remote_address )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_ssh_forward_server) identifier_ssh_forward_server (call (identifier__Server) identifier__Server (argument_list (identifier_local_bind_address) identifier_local_bind_address (identifier__Handler) identifier__Handler (keyword_argument (identifier_logger) identifier_logger (attribute (identifier_self) identifier_self (identifier_logger) identifier_logger )attribute )keyword_argument )argument_list )call )assignment )expression_statement (if_statement (identifier_ssh_forward_server) identifier_ssh_forward_server (block (expression_statement (assignment (attribute (identifier_ssh_forward_server) identifier_ssh_forward_server (identifier_daemon_threads) identifier_daemon_threads )attribute (attribute (identifier_self) identifier_self (identifier_daemon_forward_servers) identifier_daemon_forward_servers )attribute )assignment )expression_statement (expression_statement (call (attribute (attribute (identifier_self) identifier_self (identifier__server_list) identifier__server_list )attribute (identifier_append) identifier_append )attribute (argument_list (identifier_ssh_forward_server) identifier_ssh_forward_server )argument_list )call )expression_statement (expression_statement (assignment (subscript (attribute (identifier_self) identifier_self (identifier_tunnel_is_up) identifier_tunnel_is_up )attribute (attribute (identifier_ssh_forward_server) identifier_ssh_forward_server (identifier_server_address) identifier_server_address )attribute )subscript (False) False )assignment )expression_statement )block (else_clause (block (expression_statement (call (attribute (identifier_self) identifier_self (identifier__raise) identifier__raise )attribute (argument_list (identifier_BaseSSHTunnelForwarderError) identifier_BaseSSHTunnelForwarderError (call (attribute (concatenated_string (string_'Problem setting up ssh {0} <> {1} forwarder. You can ') string_'Problem setting up ssh {0} <> {1} forwarder. You can ' (string_'suppress this exception by using the `mute_exceptions`') string_'suppress this exception by using the `mute_exceptions`' (string_'argument') string_'argument' )concatenated_string (identifier_format) identifier_format )attribute (argument_list (call (identifier_address_to_str) identifier_address_to_str (argument_list (identifier_local_bind_address) identifier_local_bind_address )argument_list )call (call (identifier_address_to_str) identifier_address_to_str (argument_list (identifier_remote_address) identifier_remote_address )argument_list )call )argument_list )call )argument_list )call )expression_statement )block )else_clause )if_statement )block (except_clause (identifier_IOError) identifier_IOError (block (expression_statement (call (attribute (identifier_self) identifier_self (identifier__raise) identifier__raise )attribute (argument_list (identifier_BaseSSHTunnelForwarderError) identifier_BaseSSHTunnelForwarderError (call (attribute (concatenated_string (string_"Couldn't open tunnel {0} <> {1} might be in use or ") string_"Couldn't open tunnel {0} <> {1} might be in use or " (string_"destination not reachable") string_"destination not reachable" )concatenated_string (identifier_format) identifier_format )attribute (argument_list (call (identifier_address_to_str) identifier_address_to_str (argument_list (identifier_local_bind_address) identifier_local_bind_address )argument_list )call (call (identifier_address_to_str) identifier_address_to_str (argument_list (identifier_remote_address) identifier_remote_address )argument_list )call )argument_list )call )argument_list )call )expression_statement )block )except_clause )try_statement )block )function_definition )module
Make SSH forward proxy Server class
(module (function_definition (function_name_create) function_name_create (parameters (identifier_self) identifier_self (identifier_neighbors) identifier_neighbors )parameters (block (expression_statement (assignment (identifier_data) identifier_data (dictionary (pair (string_'neighbors') string_'neighbors' (identifier_neighbors) identifier_neighbors )pair )dictionary )assignment )expression_statement (return_statement (call (attribute (call (identifier_super) identifier_super (argument_list (identifier_ApiV4Neighbor) identifier_ApiV4Neighbor (identifier_self) identifier_self )argument_list )call (identifier_post) identifier_post )attribute (argument_list (string_'api/v4/neighbor/') string_'api/v4/neighbor/' (identifier_data) identifier_data )argument_list )call )return_statement )block )function_definition )module
Method to create neighbors :param neighbors: List containing neighbors desired to be created on database :return: None
(module (function_definition (function_name_unescape) function_name_unescape (parameters (identifier_s) identifier_s (default_parameter (identifier_unicode_action) identifier_unicode_action (string_"replace") string_"replace" )default_parameter )parameters (block (import_statement (dotted_name (identifier_HTMLParser) identifier_HTMLParser )dotted_name )import_statement (expression_statement (assignment (identifier_hp) identifier_hp (call (attribute (identifier_HTMLParser) identifier_HTMLParser (identifier_HTMLParser) identifier_HTMLParser )attribute (argument_list )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_s) identifier_s (call (attribute (identifier_hp) identifier_hp (identifier_unescape) identifier_unescape )attribute (argument_list (identifier_s) identifier_s )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_s) identifier_s (call (attribute (identifier_s) identifier_s (identifier_encode) identifier_encode )attribute (argument_list (string_'ascii') string_'ascii' (identifier_unicode_action) identifier_unicode_action )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_s) identifier_s (call (attribute (call (attribute (identifier_s) identifier_s (identifier_replace) identifier_replace )attribute (argument_list (string_"\n") string_"\n" (string_"") string_"" )argument_list )call (identifier_strip) identifier_strip )attribute (argument_list )argument_list )call )assignment )expression_statement (return_statement (identifier_s) identifier_s )return_statement )block )function_definition )module
Unescape HTML strings, and convert &amp; etc.
(module (function_definition (function_name_class_balancing_sample_weights) function_name_class_balancing_sample_weights (parameters (identifier_y) identifier_y )parameters (block (expression_statement (assignment (identifier_h) identifier_h (call (attribute (identifier_np) identifier_np (identifier_bincount) identifier_bincount )attribute (argument_list (identifier_y) identifier_y )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_cls_weight) identifier_cls_weight (binary_operator (float_1.0) float_1.0 (parenthesized_expression (binary_operator (call (attribute (identifier_h) identifier_h (identifier_astype) identifier_astype )attribute (argument_list (identifier_float) identifier_float )argument_list )call (call (identifier_len) identifier_len (argument_list (subscript (call (attribute (identifier_np) identifier_np (identifier_nonzero) identifier_nonzero )attribute (argument_list (identifier_h) identifier_h )argument_list )call (integer_0) integer_0 )subscript )argument_list )call )binary_operator )parenthesized_expression )binary_operator )assignment )expression_statement (expression_statement (assignment (subscript (identifier_cls_weight) identifier_cls_weight (call (attribute (identifier_np) identifier_np (identifier_isnan) identifier_isnan )attribute (argument_list (identifier_cls_weight) identifier_cls_weight )argument_list )call )subscript (float_0.0) float_0.0 )assignment )expression_statement (expression_statement (assignment (identifier_sample_weight) identifier_sample_weight (subscript (identifier_cls_weight) identifier_cls_weight (identifier_y) identifier_y )subscript )assignment )expression_statement (return_statement (identifier_sample_weight) identifier_sample_weight )return_statement )block )function_definition )module
Compute sample weight given an array of sample classes. The weights are assigned on a per-class basis and the per-class weights are inversely proportional to their frequency. Parameters ---------- y: NumPy array, 1D dtype=int sample classes, values must be 0 or positive Returns ------- NumPy array, 1D dtype=float per sample weight array
(module (function_definition (function_name_ucnstring_to_unicode) function_name_ucnstring_to_unicode (parameters (identifier_ucn_string) identifier_ucn_string )parameters (block (expression_statement (assignment (identifier_ucn_string) identifier_ucn_string (call (attribute (call (identifier_ucnstring_to_python) identifier_ucnstring_to_python (argument_list (identifier_ucn_string) identifier_ucn_string )argument_list )call (identifier_decode) identifier_decode )attribute (argument_list (string_'utf-8') string_'utf-8' )argument_list )call )assignment )expression_statement (assert_statement (call (identifier_isinstance) identifier_isinstance (argument_list (identifier_ucn_string) identifier_ucn_string (identifier_text_type) identifier_text_type )argument_list )call )assert_statement (return_statement (identifier_ucn_string) identifier_ucn_string )return_statement )block )function_definition )module
Return ucnstring as Unicode.
(module (function_definition (function_name_start) function_name_start (parameters (identifier_sync_event_source) identifier_sync_event_source (default_parameter (identifier_loop) identifier_loop (None) None )default_parameter )parameters (block (if_statement (not_operator (identifier_loop) identifier_loop )not_operator (block (expression_statement (assignment (identifier_loop) identifier_loop (call (attribute (identifier_asyncio) identifier_asyncio (identifier_get_event_loop) identifier_get_event_loop )attribute (argument_list )argument_list )call )assignment )expression_statement )block )if_statement (expression_statement (assignment (identifier_event_source) identifier_event_source (call (attribute (identifier_asyncio) identifier_asyncio (identifier_Queue) identifier_Queue )attribute (argument_list (keyword_argument (identifier_loop) identifier_loop (identifier_loop) identifier_loop )keyword_argument )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_bridge) identifier_bridge (call (attribute (identifier_threading) identifier_threading (identifier_Thread) identifier_Thread )attribute (argument_list (keyword_argument (identifier_target) identifier_target (identifier__multiprocessing_to_asyncio) identifier__multiprocessing_to_asyncio )keyword_argument (keyword_argument (identifier_args) identifier_args (tuple (identifier_sync_event_source) identifier_sync_event_source (identifier_event_source) identifier_event_source (identifier_loop) identifier_loop )tuple )keyword_argument (keyword_argument (identifier_daemon) identifier_daemon (True) True )keyword_argument )argument_list )call )assignment )expression_statement (expression_statement (call (attribute (identifier_bridge) identifier_bridge (identifier_start) identifier_start )attribute (argument_list )argument_list )call )expression_statement (expression_statement (assignment (identifier_app) identifier_app (call (identifier_init_app) identifier_init_app (argument_list (identifier_event_source) identifier_event_source (keyword_argument (identifier_loop) identifier_loop (identifier_loop) identifier_loop )keyword_argument )argument_list )call )assignment )expression_statement (expression_statement (call (attribute (attribute (identifier_aiohttp) identifier_aiohttp (identifier_web) identifier_web )attribute (identifier_run_app) identifier_run_app )attribute (argument_list (identifier_app) identifier_app (keyword_argument (identifier_host) identifier_host (subscript (subscript (identifier_config) identifier_config (string_'wsserver') string_'wsserver' )subscript (string_'host') string_'host' )subscript )keyword_argument (keyword_argument (identifier_port) identifier_port (subscript (subscript (identifier_config) identifier_config (string_'wsserver') string_'wsserver' )subscript (string_'port') string_'port' )subscript )keyword_argument )argument_list )call )expression_statement )block )function_definition )module
Create and start the WebSocket server.
(module (function_definition (function_name_list_event_sources) function_name_list_event_sources (parameters (identifier_self) identifier_self )parameters (block (expression_statement (assignment (identifier_path) identifier_path (call (attribute (string_'/archive/{}/events/sources') string_'/archive/{}/events/sources' (identifier_format) identifier_format )attribute (argument_list (attribute (identifier_self) identifier_self (identifier__instance) identifier__instance )attribute )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_response) identifier_response (call (attribute (attribute (identifier_self) identifier_self (identifier__client) identifier__client )attribute (identifier_get_proto) identifier_get_proto )attribute (argument_list (keyword_argument (identifier_path) identifier_path (identifier_path) identifier_path )keyword_argument )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_message) identifier_message (call (attribute (identifier_archive_pb2) identifier_archive_pb2 (identifier_EventSourceInfo) identifier_EventSourceInfo )attribute (argument_list )argument_list )call )assignment )expression_statement (expression_statement (call (attribute (identifier_message) identifier_message (identifier_ParseFromString) identifier_ParseFromString )attribute (argument_list (attribute (identifier_response) identifier_response (identifier_content) identifier_content )attribute )argument_list )call )expression_statement (expression_statement (assignment (identifier_sources) identifier_sources (call (identifier_getattr) identifier_getattr (argument_list (identifier_message) identifier_message (string_'source') string_'source' )argument_list )call )assignment )expression_statement (return_statement (call (identifier_iter) identifier_iter (argument_list (identifier_sources) identifier_sources )argument_list )call )return_statement )block )function_definition )module
Returns the existing event sources. :rtype: ~collections.Iterable[str]
(module (function_definition (function_name__compute) function_name__compute (parameters (identifier_self) identifier_self )parameters (block (expression_statement (assignment (identifier_src_path) identifier_src_path (attribute (attribute (identifier_self) identifier_self (identifier_ctx) identifier_ctx )attribute (identifier_src_path) identifier_src_path )attribute )assignment )expression_statement (if_statement (not_operator (attribute (identifier_src_path) identifier_src_path (identifier_exists) identifier_exists )attribute )not_operator (block (return_statement (identifier_NONE) identifier_NONE )return_statement )block )if_statement (if_statement (attribute (identifier_src_path) identifier_src_path (identifier_is_null) identifier_is_null )attribute (block (return_statement (None) None )return_statement )block )if_statement (try_statement (block (if_statement (attribute (identifier_self) identifier_self (identifier_parse) identifier_parse )attribute (block (expression_statement (assignment (identifier_value) identifier_value (call (attribute (identifier_self) identifier_self (identifier_parse) identifier_parse )attribute (argument_list (identifier_src_path) identifier_src_path )argument_list )call )assignment )expression_statement )block (else_clause (block (expression_statement (assignment (identifier_value) identifier_value (call (attribute (identifier_self) identifier_self (identifier__parse) identifier__parse )attribute (argument_list (identifier_src_path) identifier_src_path )argument_list )call )assignment )expression_statement )block )else_clause )if_statement (return_statement (identifier_value) identifier_value )return_statement )block (except_clause (tuple (identifier_SourceError) identifier_SourceError (identifier_ValueError) identifier_ValueError )tuple (identifier_ex) identifier_ex (block (expression_statement (call (attribute (attribute (attribute (identifier_self) identifier_self (identifier_ctx) identifier_ctx )attribute (identifier_errors) identifier_errors )attribute (identifier_invalid) identifier_invalid )attribute (argument_list (call (identifier_str) identifier_str (argument_list (identifier_ex) identifier_ex )argument_list )call )argument_list )call )expression_statement (return_statement (identifier_ERROR) identifier_ERROR )return_statement )block )except_clause )try_statement )block )function_definition )module
Processes this fields `src` from `ctx.src`.
(module (function_definition (function_name_Check) function_name_Check (parameters (identifier_self) identifier_self (identifier_stream) identifier_stream )parameters (block (expression_statement (assignment (identifier_request) identifier_request (await (call (attribute (identifier_stream) identifier_stream (identifier_recv_message) identifier_recv_message )attribute (argument_list )argument_list )call )await )assignment )expression_statement (expression_statement (assignment (identifier_checks) identifier_checks (call (attribute (attribute (identifier_self) identifier_self (identifier__checks) identifier__checks )attribute (identifier_get) identifier_get )attribute (argument_list (attribute (identifier_request) identifier_request (identifier_service) identifier_service )attribute )argument_list )call )assignment )expression_statement (if_statement (comparison_operator (identifier_checks) identifier_checks (None) None )comparison_operator (block (expression_statement (await (call (attribute (identifier_stream) identifier_stream (identifier_send_trailing_metadata) identifier_send_trailing_metadata )attribute (argument_list (keyword_argument (identifier_status) identifier_status (attribute (identifier_Status) identifier_Status (identifier_NOT_FOUND) identifier_NOT_FOUND )attribute )keyword_argument )argument_list )call )await )expression_statement )block (elif_clause (comparison_operator (call (identifier_len) identifier_len (argument_list (identifier_checks) identifier_checks )argument_list )call (integer_0) integer_0 )comparison_operator (block (expression_statement (await (call (attribute (identifier_stream) identifier_stream (identifier_send_message) identifier_send_message )attribute (argument_list (call (identifier_HealthCheckResponse) identifier_HealthCheckResponse (argument_list (keyword_argument (identifier_status) identifier_status (attribute (identifier_HealthCheckResponse) identifier_HealthCheckResponse (identifier_SERVING) identifier_SERVING )attribute )keyword_argument )argument_list )call )argument_list )call )await )expression_statement )block )elif_clause (else_clause (block (for_statement (identifier_check) identifier_check (identifier_checks) identifier_checks (block (expression_statement (await (call (attribute (identifier_check) identifier_check (identifier___check__) identifier___check__ )attribute (argument_list )argument_list )call )await )expression_statement )block )for_statement (expression_statement (await (call (attribute (identifier_stream) identifier_stream (identifier_send_message) identifier_send_message )attribute (argument_list (call (identifier_HealthCheckResponse) identifier_HealthCheckResponse (argument_list (keyword_argument (identifier_status) identifier_status (call (identifier__status) identifier__status (argument_list (identifier_checks) identifier_checks )argument_list )call )keyword_argument )argument_list )call )argument_list )call )await )expression_statement )block )else_clause )if_statement )block )function_definition )module
Implements synchronous periodic checks
(module (function_definition (function_name_register) function_name_register (parameters (identifier_self) identifier_self (identifier_resource) identifier_resource (identifier_event) identifier_event (identifier_trigger) identifier_trigger (dictionary_splat_pattern (identifier_kwargs) identifier_kwargs )dictionary_splat_pattern )parameters (block (expression_statement (call (attribute (call (identifier_super) identifier_super (argument_list (identifier_AristaTrunkDriver) identifier_AristaTrunkDriver (identifier_self) identifier_self )argument_list )call (identifier_register) identifier_register )attribute (argument_list (identifier_resource) identifier_resource (identifier_event) identifier_event (identifier_trigger) identifier_trigger (identifier_kwargs) identifier_kwargs )argument_list )call )expression_statement (expression_statement (call (attribute (identifier_registry) identifier_registry (identifier_subscribe) identifier_subscribe )attribute (argument_list (attribute (identifier_self) identifier_self (identifier_subport_create) identifier_subport_create )attribute (attribute (identifier_resources) identifier_resources (identifier_SUBPORTS) identifier_SUBPORTS )attribute (attribute (identifier_events) identifier_events (identifier_AFTER_CREATE) identifier_AFTER_CREATE )attribute )argument_list )call )expression_statement (expression_statement (call (attribute (identifier_registry) identifier_registry (identifier_subscribe) identifier_subscribe )attribute (argument_list (attribute (identifier_self) identifier_self (identifier_subport_delete) identifier_subport_delete )attribute (attribute (identifier_resources) identifier_resources (identifier_SUBPORTS) identifier_SUBPORTS )attribute (attribute (identifier_events) identifier_events (identifier_AFTER_DELETE) identifier_AFTER_DELETE )attribute )argument_list )call )expression_statement (expression_statement (call (attribute (identifier_registry) identifier_registry (identifier_subscribe) identifier_subscribe )attribute (argument_list (attribute (identifier_self) identifier_self (identifier_trunk_create) identifier_trunk_create )attribute (attribute (identifier_resources) identifier_resources (identifier_TRUNK) identifier_TRUNK )attribute (attribute (identifier_events) identifier_events (identifier_AFTER_CREATE) identifier_AFTER_CREATE )attribute )argument_list )call )expression_statement (expression_statement (call (attribute (identifier_registry) identifier_registry (identifier_subscribe) identifier_subscribe )attribute (argument_list (attribute (identifier_self) identifier_self (identifier_trunk_update) identifier_trunk_update )attribute (attribute (identifier_resources) identifier_resources (identifier_TRUNK) identifier_TRUNK )attribute (attribute (identifier_events) identifier_events (identifier_AFTER_UPDATE) identifier_AFTER_UPDATE )attribute )argument_list )call )expression_statement (expression_statement (call (attribute (identifier_registry) identifier_registry (identifier_subscribe) identifier_subscribe )attribute (argument_list (attribute (identifier_self) identifier_self (identifier_trunk_delete) identifier_trunk_delete )attribute (attribute (identifier_resources) identifier_resources (identifier_TRUNK) identifier_TRUNK )attribute (attribute (identifier_events) identifier_events (identifier_AFTER_DELETE) identifier_AFTER_DELETE )attribute )argument_list )call )expression_statement (expression_statement (assignment (attribute (identifier_self) identifier_self (identifier_core_plugin) identifier_core_plugin )attribute (call (attribute (identifier_directory) identifier_directory (identifier_get_plugin) identifier_get_plugin )attribute (argument_list )argument_list )call )assignment )expression_statement (expression_statement (call (attribute (identifier_LOG) identifier_LOG (identifier_debug) identifier_debug )attribute (argument_list (string_"Arista trunk driver initialized.") string_"Arista trunk driver initialized." )argument_list )call )expression_statement )block )function_definition )module
Called in trunk plugin's AFTER_INIT
(module (function_definition (function_name_loaders) function_name_loaders (parameters (list_splat_pattern (identifier_specifiers) identifier_specifiers )list_splat_pattern )parameters (block (for_statement (identifier_specifier) identifier_specifier (identifier_specifiers) identifier_specifiers (block (if_statement (call (identifier_isinstance) identifier_isinstance (argument_list (identifier_specifier) identifier_specifier (identifier_Locality) identifier_Locality )argument_list )call (block (expression_statement (yield (subscript (identifier__LOADERS) identifier__LOADERS (identifier_specifier) identifier_specifier )subscript )yield )expression_statement )block (else_clause (block (expression_statement (yield (identifier_specifier) identifier_specifier )yield )expression_statement )block )else_clause )if_statement )block )for_statement )block )function_definition )module
Generates loaders in the specified order. Arguments can be `.Locality` instances, producing the loader(s) available for that locality, `str` instances (used as file path templates) or `callable`s. These can be mixed: .. code-block:: python # define a load order using predefined user-local locations, # an explicit path, a template and a user-defined function load_order = loaders(Locality.user, '/etc/defaults/hard-coded.yaml', '/path/to/{name}.{extension}', my_loader) # load configuration for name 'my-application' using the load order # defined above config = load_name('my-application', load_order=load_order) :param specifiers: :return: a `generator` of configuration loaders in the specified order
(module (function_definition (function_name_dft_task) function_name_dft_task (parameters (identifier_cls) identifier_cls (identifier_mol) identifier_mol (default_parameter (identifier_xc) identifier_xc (string_"b3lyp") string_"b3lyp" )default_parameter (dictionary_splat_pattern (identifier_kwargs) identifier_kwargs )dictionary_splat_pattern )parameters (block (expression_statement (assignment (identifier_t) identifier_t (call (attribute (identifier_NwTask) identifier_NwTask (identifier_from_molecule) identifier_from_molecule )attribute (argument_list (identifier_mol) identifier_mol (keyword_argument (identifier_theory) identifier_theory (string_"dft") string_"dft" )keyword_argument (dictionary_splat (identifier_kwargs) identifier_kwargs )dictionary_splat )argument_list )call )assignment )expression_statement (expression_statement (call (attribute (attribute (identifier_t) identifier_t (identifier_theory_directives) identifier_theory_directives )attribute (identifier_update) identifier_update )attribute (argument_list (dictionary (pair (string_"xc") string_"xc" (identifier_xc) identifier_xc )pair (pair (string_"mult") string_"mult" (attribute (identifier_t) identifier_t (identifier_spin_multiplicity) identifier_spin_multiplicity )attribute )pair )dictionary )argument_list )call )expression_statement (return_statement (identifier_t) identifier_t )return_statement )block )function_definition )module
A class method for quickly creating DFT tasks with optional cosmo parameter . Args: mol: Input molecule xc: Exchange correlation to use. \\*\\*kwargs: Any of the other kwargs supported by NwTask. Note the theory is always "dft" for a dft task.
(module (function_definition (function_name_events) function_name_events (parameters (identifier_self) identifier_self (identifier_argv) identifier_argv )parameters (block (expression_statement (assignment (identifier_opts) identifier_opts (call (identifier_cmdline) identifier_cmdline (argument_list (identifier_argv) identifier_argv (identifier_FLAGS_EVENTS) identifier_FLAGS_EVENTS )argument_list )call )assignment )expression_statement (expression_statement (call (attribute (identifier_self) identifier_self (identifier_foreach) identifier_foreach )attribute (argument_list (attribute (identifier_opts) identifier_opts (identifier_args) identifier_args )attribute (lambda (lambda_parameters (identifier_job) identifier_job )lambda_parameters (call (identifier_output) identifier_output (argument_list (call (attribute (identifier_job) identifier_job (identifier_events) identifier_events )attribute (argument_list (dictionary_splat (attribute (identifier_opts) identifier_opts (identifier_kwargs) identifier_kwargs )attribute )dictionary_splat )argument_list )call )argument_list )call )lambda )argument_list )call )expression_statement )block )function_definition )module
Retrieve events for the specified search jobs.
(module (function_definition (function_name__prepare_conn_args) function_name__prepare_conn_args (parameters (identifier_self) identifier_self (identifier_kwargs) identifier_kwargs )parameters (block (expression_statement (assignment (subscript (identifier_kwargs) identifier_kwargs (string_'connect_over_uds') string_'connect_over_uds' )subscript (True) True )assignment )expression_statement (expression_statement (assignment (subscript (identifier_kwargs) identifier_kwargs (string_'timeout') string_'timeout' )subscript (call (attribute (identifier_kwargs) identifier_kwargs (identifier_get) identifier_get )attribute (argument_list (string_'timeout') string_'timeout' (integer_60) integer_60 )argument_list )call )assignment )expression_statement (expression_statement (assignment (subscript (identifier_kwargs) identifier_kwargs (string_'cookie') string_'cookie' )subscript (call (attribute (identifier_kwargs) identifier_kwargs (identifier_get) identifier_get )attribute (argument_list (string_'cookie') string_'cookie' (string_'admin') string_'admin' )argument_list )call )assignment )expression_statement (if_statement (call (attribute (identifier_self) identifier_self (identifier__use_remote_connection) identifier__use_remote_connection )attribute (argument_list (identifier_kwargs) identifier_kwargs )argument_list )call (block (expression_statement (assignment (subscript (identifier_kwargs) identifier_kwargs (string_'transport') string_'transport' )subscript (call (attribute (identifier_kwargs) identifier_kwargs (identifier_get) identifier_get )attribute (argument_list (string_'transport') string_'transport' (string_'https') string_'https' )argument_list )call )assignment )expression_statement (if_statement (comparison_operator (subscript (identifier_kwargs) identifier_kwargs (string_'transport') string_'transport' )subscript (string_'https') string_'https' )comparison_operator (block (expression_statement (assignment (subscript (identifier_kwargs) identifier_kwargs (string_'port') string_'port' )subscript (call (attribute (identifier_kwargs) identifier_kwargs (identifier_get) identifier_get )attribute (argument_list (string_'port') string_'port' (integer_443) integer_443 )argument_list )call )assignment )expression_statement )block (else_clause (block (expression_statement (assignment (subscript (identifier_kwargs) identifier_kwargs (string_'port') string_'port' )subscript (call (attribute (identifier_kwargs) identifier_kwargs (identifier_get) identifier_get )attribute (argument_list (string_'port') string_'port' (integer_80) integer_80 )argument_list )call )assignment )expression_statement )block )else_clause )if_statement (expression_statement (assignment (subscript (identifier_kwargs) identifier_kwargs (string_'verify') string_'verify' )subscript (call (attribute (identifier_kwargs) identifier_kwargs (identifier_get) identifier_get )attribute (argument_list (string_'verify') string_'verify' (True) True )argument_list )call )assignment )expression_statement (if_statement (call (identifier_isinstance) identifier_isinstance (argument_list (subscript (identifier_kwargs) identifier_kwargs (string_'verify') string_'verify' )subscript (identifier_bool) identifier_bool )argument_list )call (block (expression_statement (assignment (subscript (identifier_kwargs) identifier_kwargs (string_'verify_ssl') string_'verify_ssl' )subscript (subscript (identifier_kwargs) identifier_kwargs (string_'verify') string_'verify' )subscript )assignment )expression_statement )block (else_clause (block (expression_statement (assignment (subscript (identifier_kwargs) identifier_kwargs (string_'ca_bundle') string_'ca_bundle' )subscript (subscript (identifier_kwargs) identifier_kwargs (string_'verify') string_'verify' )subscript )assignment )expression_statement )block )else_clause )if_statement (expression_statement (assignment (subscript (identifier_kwargs) identifier_kwargs (string_'connect_over_uds') string_'connect_over_uds' )subscript (False) False )assignment )expression_statement )block )if_statement (return_statement (identifier_kwargs) identifier_kwargs )return_statement )block )function_definition )module
Set connection arguments for remote or local connection.
(module (function_definition (function_name_append) function_name_append (parameters (identifier_self) identifier_self (typed_parameter (list_splat_pattern (identifier_nodes) identifier_nodes )list_splat_pattern (type (generic_type (identifier_Union) identifier_Union (type_parameter (type (identifier_AbstractNode) identifier_AbstractNode )type (type (identifier_str) identifier_str )type )type_parameter )generic_type )type )typed_parameter )parameters (type (None) None )type (block (expression_statement (assignment (identifier_node) identifier_node (call (identifier__to_node_list) identifier__to_node_list (argument_list (identifier_nodes) identifier_nodes )argument_list )call )assignment )expression_statement (expression_statement (call (attribute (identifier_self) identifier_self (identifier_appendChild) identifier_appendChild )attribute (argument_list (identifier_node) identifier_node )argument_list )call )expression_statement )block )function_definition )module
Append new nodes after last child node.
(module (function_definition (function_name_query) function_name_query (parameters (identifier_number) identifier_number (identifier_domains) identifier_domains (default_parameter (identifier_resolver) identifier_resolver (None) None )default_parameter )parameters (block (if_statement (comparison_operator (identifier_resolver) identifier_resolver (None) None )comparison_operator (block (expression_statement (assignment (identifier_resolver) identifier_resolver (call (attribute (attribute (identifier_dns) identifier_dns (identifier_resolver) identifier_resolver )attribute (identifier_get_default_resolver) identifier_get_default_resolver )attribute (argument_list )argument_list )call )assignment )expression_statement )block )if_statement (for_statement (identifier_domain) identifier_domain (identifier_domains) identifier_domains (block (if_statement (call (identifier_isinstance) identifier_isinstance (argument_list (identifier_domain) identifier_domain (tuple (identifier_str) identifier_str (identifier_unicode) identifier_unicode )tuple )argument_list )call (block (expression_statement (assignment (identifier_domain) identifier_domain (call (attribute (attribute (identifier_dns) identifier_dns (identifier_name) identifier_name )attribute (identifier_from_text) identifier_from_text )attribute (argument_list (identifier_domain) identifier_domain )argument_list )call )assignment )expression_statement )block )if_statement (expression_statement (assignment (identifier_qname) identifier_qname (call (attribute (attribute (identifier_dns) identifier_dns (identifier_e164) identifier_e164 )attribute (identifier_from_e164) identifier_from_e164 )attribute (argument_list (identifier_number) identifier_number (identifier_domain) identifier_domain )argument_list )call )assignment )expression_statement (try_statement (block (return_statement (call (attribute (identifier_resolver) identifier_resolver (identifier_query) identifier_query )attribute (argument_list (identifier_qname) identifier_qname (string_'NAPTR') string_'NAPTR' )argument_list )call )return_statement )block (except_clause (attribute (attribute (identifier_dns) identifier_dns (identifier_resolver) identifier_resolver )attribute (identifier_NXDOMAIN) identifier_NXDOMAIN )attribute (block (pass_statement )pass_statement )block )except_clause )try_statement )block )for_statement (raise_statement (attribute (attribute (identifier_dns) identifier_dns (identifier_resolver) identifier_resolver )attribute (identifier_NXDOMAIN) identifier_NXDOMAIN )attribute )raise_statement )block )function_definition )module
Look for NAPTR RRs for the specified number in the specified domains. e.g. lookup('16505551212', ['e164.dnspython.org.', 'e164.arpa.'])
(module (function_definition (function_name_match) function_name_match (parameters (identifier_self) identifier_self (identifier_package) identifier_package )parameters (block (if_statement (call (identifier_isinstance) identifier_isinstance (argument_list (identifier_package) identifier_package (identifier_basestring) identifier_basestring )argument_list )call (block (import_from_statement (relative_import (import_prefix )import_prefix (dotted_name (identifier_packages) identifier_packages )dotted_name )relative_import (dotted_name (identifier_Package) identifier_Package )dotted_name )import_from_statement (expression_statement (assignment (identifier_package) identifier_package (call (attribute (identifier_Package) identifier_Package (identifier_parse) identifier_parse )attribute (argument_list (identifier_package) identifier_package )argument_list )call )assignment )expression_statement )block )if_statement (if_statement (comparison_operator (attribute (identifier_self) identifier_self (identifier_name) identifier_name )attribute (attribute (identifier_package) identifier_package (identifier_name) identifier_name )attribute )comparison_operator (block (return_statement (False) False )return_statement )block )if_statement (if_statement (boolean_operator (attribute (identifier_self) identifier_self (identifier_version_constraints) identifier_version_constraints )attribute (line_continuation_\) line_continuation_\ (comparison_operator (attribute (identifier_package) identifier_package (identifier_version) identifier_version )attribute (attribute (identifier_self) identifier_self (identifier_version_constraints) identifier_version_constraints )attribute )comparison_operator )boolean_operator (block (return_statement (False) False )return_statement )block )if_statement (if_statement (attribute (identifier_self) identifier_self (identifier_build_options) identifier_build_options )attribute (block (if_statement (attribute (identifier_package) identifier_package (identifier_build_options) identifier_build_options )attribute (block (if_statement (binary_operator (attribute (identifier_self) identifier_self (identifier_build_options) identifier_build_options )attribute (attribute (identifier_package) identifier_package (identifier_build_options) identifier_build_options )attribute )binary_operator (block (return_statement (False) False )return_statement )block (else_clause (block (return_statement (True) True )return_statement )block )else_clause )if_statement )block (else_clause (block (return_statement (False) False )return_statement )block )else_clause )if_statement )block (else_clause (block (return_statement (True) True )return_statement )block )else_clause )if_statement )block )function_definition )module
Match ``package`` with the requirement. :param package: Package to test with the requirement. :type package: package expression string or :class:`Package` :returns: ``True`` if ``package`` satisfies the requirement. :rtype: bool
(module (function_definition (function_name_lookup_object) function_name_lookup_object (parameters (identifier_model) identifier_model (identifier_object_id) identifier_object_id (identifier_slug) identifier_slug (identifier_slug_field) identifier_slug_field )parameters (block (expression_statement (assignment (identifier_lookup_kwargs) identifier_lookup_kwargs (dictionary )dictionary )assignment )expression_statement (if_statement (identifier_object_id) identifier_object_id (block (expression_statement (assignment (subscript (identifier_lookup_kwargs) identifier_lookup_kwargs (binary_operator (string_'%s__exact') string_'%s__exact' (attribute (attribute (attribute (identifier_model) identifier_model (identifier__meta) identifier__meta )attribute (identifier_pk) identifier_pk )attribute (identifier_name) identifier_name )attribute )binary_operator )subscript (identifier_object_id) identifier_object_id )assignment )expression_statement )block (elif_clause (boolean_operator (identifier_slug) identifier_slug (identifier_slug_field) identifier_slug_field )boolean_operator (block (expression_statement (assignment (subscript (identifier_lookup_kwargs) identifier_lookup_kwargs (binary_operator (string_'%s__exact') string_'%s__exact' (identifier_slug_field) identifier_slug_field )binary_operator )subscript (identifier_slug) identifier_slug )assignment )expression_statement )block )elif_clause (else_clause (block (raise_statement (call (identifier_GenericViewError) identifier_GenericViewError (argument_list (concatenated_string (string_"Generic view must be called with either an object_id or a") string_"Generic view must be called with either an object_id or a" (string_" slug/slug_field.") string_" slug/slug_field." )concatenated_string )argument_list )call )raise_statement )block )else_clause )if_statement (try_statement (block (return_statement (call (attribute (attribute (identifier_model) identifier_model (identifier_objects) identifier_objects )attribute (identifier_get) identifier_get )attribute (argument_list (dictionary_splat (identifier_lookup_kwargs) identifier_lookup_kwargs )dictionary_splat )argument_list )call )return_statement )block (except_clause (identifier_ObjectDoesNotExist) identifier_ObjectDoesNotExist (block (raise_statement (call (identifier_Http404) identifier_Http404 (argument_list (binary_operator (string_"No %s found for %s") string_"No %s found for %s" (tuple (attribute (attribute (identifier_model) identifier_model (identifier__meta) identifier__meta )attribute (identifier_verbose_name) identifier_verbose_name )attribute (identifier_lookup_kwargs) identifier_lookup_kwargs )tuple )binary_operator )argument_list )call )raise_statement )block )except_clause )try_statement )block )function_definition )module
Return the ``model`` object with the passed ``object_id``. If ``object_id`` is None, then return the object whose ``slug_field`` equals the passed ``slug``. If ``slug`` and ``slug_field`` are not passed, then raise Http404 exception.
(module (function_definition (function_name_get_peer_resources) function_name_get_peer_resources (parameters (identifier_self) identifier_self (identifier_peer_jid) identifier_peer_jid )parameters (block (try_statement (block (expression_statement (assignment (identifier_d) identifier_d (call (identifier_dict) identifier_dict (argument_list (subscript (attribute (identifier_self) identifier_self (identifier__presences) identifier__presences )attribute (identifier_peer_jid) identifier_peer_jid )subscript )argument_list )call )assignment )expression_statement (expression_statement (call (attribute (identifier_d) identifier_d (identifier_pop) identifier_pop )attribute (argument_list (None) None (None) None )argument_list )call )expression_statement (return_statement (identifier_d) identifier_d )return_statement )block (except_clause (identifier_KeyError) identifier_KeyError (block (return_statement (dictionary )dictionary )return_statement )block )except_clause )try_statement )block )function_definition )module
Return a dict mapping resources of the given bare `peer_jid` to the presence state last received for that resource. Unavailable presence states are not included. If the bare JID is in a error state (i.e. an error presence stanza has been received), the returned mapping is empty.
(module (function_definition (function_name_tryload_cache) function_name_tryload_cache (parameters (identifier_dpath) identifier_dpath (identifier_fname) identifier_fname (identifier_cfgstr) identifier_cfgstr (default_parameter (identifier_verbose) identifier_verbose (None) None )default_parameter )parameters (block (try_statement (block (return_statement (call (identifier_load_cache) identifier_load_cache (argument_list (identifier_dpath) identifier_dpath (identifier_fname) identifier_fname (identifier_cfgstr) identifier_cfgstr (keyword_argument (identifier_verbose) identifier_verbose (identifier_verbose) identifier_verbose )keyword_argument )argument_list )call )return_statement )block (except_clause (identifier_IOError) identifier_IOError (block (return_statement (None) None )return_statement )block )except_clause )try_statement )block )function_definition )module
returns None if cache cannot be loaded
(module (function_definition (function_name_clean_community_indexes) function_name_clean_community_indexes (parameters (identifier_communityID) identifier_communityID )parameters (block (expression_statement (assignment (identifier_communityID) identifier_communityID (call (attribute (identifier_np) identifier_np (identifier_array) identifier_array )attribute (argument_list (identifier_communityID) identifier_communityID )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_cid_shape) identifier_cid_shape (attribute (identifier_communityID) identifier_communityID (identifier_shape) identifier_shape )attribute )assignment )expression_statement (if_statement (comparison_operator (call (identifier_len) identifier_len (argument_list (identifier_cid_shape) identifier_cid_shape )argument_list )call (integer_1) integer_1 )comparison_operator (block (expression_statement (assignment (identifier_communityID) identifier_communityID (call (attribute (identifier_communityID) identifier_communityID (identifier_flatten) identifier_flatten )attribute (argument_list )argument_list )call )assignment )expression_statement )block )if_statement (expression_statement (assignment (identifier_new_communityID) identifier_new_communityID (call (attribute (identifier_np) identifier_np (identifier_zeros) identifier_zeros )attribute (argument_list (call (identifier_len) identifier_len (argument_list (identifier_communityID) identifier_communityID )argument_list )call )argument_list )call )assignment )expression_statement (for_statement (pattern_list (identifier_i) identifier_i (identifier_n) identifier_n )pattern_list (call (identifier_enumerate) identifier_enumerate (argument_list (call (attribute (identifier_np) identifier_np (identifier_unique) identifier_unique )attribute (argument_list (identifier_communityID) identifier_communityID )argument_list )call )argument_list )call (block (expression_statement (assignment (subscript (identifier_new_communityID) identifier_new_communityID (comparison_operator (identifier_communityID) identifier_communityID (identifier_n) identifier_n )comparison_operator )subscript (identifier_i) identifier_i )assignment )expression_statement )block )for_statement (if_statement (comparison_operator (call (identifier_len) identifier_len (argument_list (identifier_cid_shape) identifier_cid_shape )argument_list )call (integer_1) integer_1 )comparison_operator (block (expression_statement (assignment (identifier_new_communityID) identifier_new_communityID (call (attribute (identifier_new_communityID) identifier_new_communityID (identifier_reshape) identifier_reshape )attribute (argument_list (identifier_cid_shape) identifier_cid_shape )argument_list )call )assignment )expression_statement )block )if_statement (return_statement (identifier_new_communityID) identifier_new_communityID )return_statement )block )function_definition )module
Takes input of community assignments. Returns reindexed community assignment by using smallest numbers possible. Parameters ---------- communityID : array-like list or array of integers. Output from community detection algorithems. Returns ------- new_communityID : array cleaned list going from 0 to len(np.unique(communityID))-1 Note ----- Behaviour of funciton entails that the lowest community integer in communityID will recieve the lowest integer in new_communityID.
(module (function_definition (function_name_clear_key_before) function_name_clear_key_before (parameters (identifier_self) identifier_self (identifier_key) identifier_key (default_parameter (identifier_namespace) identifier_namespace (None) None )default_parameter (default_parameter (identifier_timestamp) identifier_timestamp (None) None )default_parameter )parameters (block (expression_statement (assignment (identifier_block_size) identifier_block_size (attribute (attribute (identifier_self) identifier_self (identifier_config) identifier_config )attribute (identifier_block_size) identifier_block_size )attribute )assignment )expression_statement (if_statement (comparison_operator (identifier_namespace) identifier_namespace (None) None )comparison_operator (block (expression_statement (assignment (identifier_namespace) identifier_namespace (attribute (attribute (identifier_self) identifier_self (identifier_config) identifier_config )attribute (identifier_namespace) identifier_namespace )attribute )assignment )expression_statement )block )if_statement (if_statement (comparison_operator (identifier_timestamp) identifier_timestamp (None) None )comparison_operator (block (expression_statement (assignment (pattern_list (identifier_offset) identifier_offset (identifier_remainder) identifier_remainder )pattern_list (call (identifier_divmod) identifier_divmod (argument_list (identifier_timestamp) identifier_timestamp (identifier_block_size) identifier_block_size )argument_list )call )assignment )expression_statement (if_statement (identifier_remainder) identifier_remainder (block (raise_statement (call (identifier_ValueError) identifier_ValueError (argument_list (string_'timestamp must be on a block boundary') string_'timestamp must be on a block boundary' )argument_list )call )raise_statement )block )if_statement (if_statement (comparison_operator (identifier_offset) identifier_offset (integer_0) integer_0 )comparison_operator (block (raise_statement (call (identifier_ValueError) identifier_ValueError (argument_list (string_'cannot delete before offset zero') string_'cannot delete before offset zero' )argument_list )call )raise_statement )block )if_statement (expression_statement (augmented_assignment (identifier_offset) identifier_offset (integer_1) integer_1 )augmented_assignment )expression_statement (expression_statement (call (attribute (attribute (identifier_self) identifier_self (identifier_driver) identifier_driver )attribute (identifier_clear_key_before) identifier_clear_key_before )attribute (argument_list (identifier_key) identifier_key (identifier_namespace) identifier_namespace (identifier_offset) identifier_offset (identifier_timestamp) identifier_timestamp )argument_list )call )expression_statement )block (else_clause (block (expression_statement (call (attribute (attribute (identifier_self) identifier_self (identifier_driver) identifier_driver )attribute (identifier_clear_key_before) identifier_clear_key_before )attribute (argument_list (identifier_key) identifier_key (identifier_namespace) identifier_namespace )argument_list )call )expression_statement )block )else_clause )if_statement )block )function_definition )module
Clear all data before `timestamp` for a given key. Note that the timestamp is rounded down to the nearest block boundary
(module (function_definition (function_name_format_citations) function_name_format_citations (parameters (identifier_zid) identifier_zid (default_parameter (identifier_url) identifier_url (string_'https://zenodo.org/') string_'https://zenodo.org/' )default_parameter (default_parameter (identifier_hits) identifier_hits (integer_10) integer_10 )default_parameter (default_parameter (identifier_tag_prefix) identifier_tag_prefix (string_'v') string_'v' )default_parameter )parameters (block (expression_statement (assignment (identifier_url) identifier_url (parenthesized_expression (call (attribute (concatenated_string (string_'{url}/api/records/?') string_'{url}/api/records/?' (string_'page=1&') string_'page=1&' (string_'size={hits}&') string_'size={hits}&' (string_'q=conceptrecid:"{id}"&') string_'q=conceptrecid:"{id}"&' (string_'sort=-version&') string_'sort=-version&' (string_'all_versions=True') string_'all_versions=True' )concatenated_string (identifier_format) identifier_format )attribute (argument_list (keyword_argument (identifier_id) identifier_id (identifier_zid) identifier_zid )keyword_argument (keyword_argument (identifier_url) identifier_url (identifier_url) identifier_url )keyword_argument (keyword_argument (identifier_hits) identifier_hits (identifier_hits) identifier_hits )keyword_argument )argument_list )call )parenthesized_expression )assignment )expression_statement (expression_statement (assignment (identifier_metadata) identifier_metadata (call (attribute (call (attribute (identifier_requests) identifier_requests (identifier_get) identifier_get )attribute (argument_list (identifier_url) identifier_url )argument_list )call (identifier_json) identifier_json )attribute (argument_list )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_lines) identifier_lines (list )list )assignment )expression_statement (for_statement (pattern_list (identifier_i) identifier_i (identifier_hit) identifier_hit )pattern_list (call (identifier_enumerate) identifier_enumerate (argument_list (subscript (subscript (identifier_metadata) identifier_metadata (string_'hits') string_'hits' )subscript (string_'hits') string_'hits' )subscript )argument_list )call (block (expression_statement (assignment (identifier_version) identifier_version (subscript (subscript (subscript (identifier_hit) identifier_hit (string_'metadata') string_'metadata' )subscript (string_'version') string_'version' )subscript (slice (call (identifier_len) identifier_len (argument_list (identifier_tag_prefix) identifier_tag_prefix )argument_list )call (colon) colon )slice )subscript )assignment )expression_statement (expression_statement (call (attribute (identifier_lines) identifier_lines (identifier_append) identifier_append )attribute (argument_list (binary_operator (string_'-') string_'-' (call (identifier_len) identifier_len (argument_list (identifier_version) identifier_version )argument_list )call )binary_operator )argument_list )call )expression_statement (expression_statement (call (attribute (identifier_lines) identifier_lines (identifier_append) identifier_append )attribute (argument_list (identifier_version) identifier_version )argument_list )call )expression_statement (expression_statement (call (attribute (identifier_lines) identifier_lines (identifier_append) identifier_append )attribute (argument_list (binary_operator (string_'-') string_'-' (call (identifier_len) identifier_len (argument_list (identifier_version) identifier_version )argument_list )call )binary_operator )argument_list )call )expression_statement (expression_statement (call (attribute (identifier_lines) identifier_lines (identifier_append) identifier_append )attribute (argument_list (string_'') string_'' )argument_list )call )expression_statement (expression_statement (call (attribute (identifier_lines) identifier_lines (identifier_append) identifier_append )attribute (argument_list (call (attribute (concatenated_string (string_'.. image:: {badge}\n') string_'.. image:: {badge}\n' (string_' :target: {doi}') string_' :target: {doi}' )concatenated_string (identifier_format) identifier_format )attribute (argument_list (dictionary_splat (subscript (identifier_hit) identifier_hit (string_'links') string_'links' )subscript )dictionary_splat )argument_list )call )argument_list )call )expression_statement (if_statement (comparison_operator (identifier_i) identifier_i (binary_operator (identifier_hits) identifier_hits (integer_1) integer_1 )binary_operator )comparison_operator (block (expression_statement (call (attribute (identifier_lines) identifier_lines (identifier_append) identifier_append )attribute (argument_list (string_'') string_'' )argument_list )call )expression_statement )block )if_statement )block )for_statement (return_statement (call (attribute (string_'\n') string_'\n' (identifier_join) identifier_join )attribute (argument_list (identifier_lines) identifier_lines )argument_list )call )return_statement )block )function_definition )module
Query and format a citations page from Zenodo entries Parameters ---------- zid : `int`, `str` the Zenodo ID of the target record url : `str`, optional the base URL of the Zenodo host, defaults to ``https://zenodo.org`` hist : `int`, optional the maximum number of hits to show, default: ``10`` tag_prefix : `str`, optional the prefix for git tags. This is removed to generate the section headers in the output RST Returns ------- rst : `str` an RST-formatted string of DOI badges with URLs
(module (function_definition (function_name_needsattached) function_name_needsattached (parameters (identifier_func) identifier_func )parameters (block (decorated_definition (decorator (call (attribute (identifier_functools) identifier_functools (identifier_wraps) identifier_wraps )attribute (argument_list (identifier_func) identifier_func )argument_list )call )decorator (function_definition (function_name_wrap) function_name_wrap (parameters (identifier_self) identifier_self (list_splat_pattern (identifier_args) identifier_args )list_splat_pattern (dictionary_splat_pattern (identifier_kwargs) identifier_kwargs )dictionary_splat_pattern )parameters (block (if_statement (not_operator (attribute (identifier_self) identifier_self (identifier_attached) identifier_attached )attribute )not_operator (block (raise_statement (call (identifier_PositionError) identifier_PositionError (argument_list (string_'Not attached to any process.') string_'Not attached to any process.' )argument_list )call )raise_statement )block )if_statement (return_statement (call (identifier_func) identifier_func (argument_list (identifier_self) identifier_self (list_splat (identifier_args) identifier_args )list_splat (dictionary_splat (identifier_kwargs) identifier_kwargs )dictionary_splat )argument_list )call )return_statement )block )function_definition )decorated_definition (return_statement (identifier_wrap) identifier_wrap )return_statement )block )function_definition )module
Decorator to prevent commands from being used when not attached.
(module (function_definition (function_name_print_sorted_counter) function_name_print_sorted_counter (parameters (identifier_counter) identifier_counter (default_parameter (identifier_tab) identifier_tab (integer_1) integer_1 )default_parameter )parameters (block (for_statement (pattern_list (identifier_key) identifier_key (identifier_count) identifier_count )pattern_list (call (identifier_sorted) identifier_sorted (argument_list (call (attribute (identifier_counter) identifier_counter (identifier_items) identifier_items )attribute (argument_list )argument_list )call (keyword_argument (identifier_key) identifier_key (call (identifier_itemgetter) identifier_itemgetter (argument_list (integer_1) integer_1 )argument_list )call )keyword_argument (keyword_argument (identifier_reverse) identifier_reverse (True) True )keyword_argument )argument_list )call (block (print_statement (call (attribute (string_"{0}{1} - {2}") string_"{0}{1} - {2}" (identifier_format) identifier_format )attribute (argument_list (binary_operator (string_'\t') string_'\t' (identifier_tab) identifier_tab )binary_operator (identifier_key) identifier_key (identifier_count) identifier_count )argument_list )call )print_statement )block )for_statement )block )function_definition )module
print all elements of a counter in descending order
(module (function_definition (function_name_get_instance) function_name_get_instance (parameters (identifier_self) identifier_self (identifier_payload) identifier_payload )parameters (block (return_statement (call (identifier_CertificateInstance) identifier_CertificateInstance (argument_list (attribute (identifier_self) identifier_self (identifier__version) identifier__version )attribute (identifier_payload) identifier_payload (keyword_argument (identifier_fleet_sid) identifier_fleet_sid (subscript (attribute (identifier_self) identifier_self (identifier__solution) identifier__solution )attribute (string_'fleet_sid') string_'fleet_sid' )subscript )keyword_argument )argument_list )call )return_statement )block )function_definition )module
Build an instance of CertificateInstance :param dict payload: Payload response from the API :returns: twilio.rest.preview.deployed_devices.fleet.certificate.CertificateInstance :rtype: twilio.rest.preview.deployed_devices.fleet.certificate.CertificateInstance
(module (function_definition (function_name_cmd_sync) function_name_cmd_sync (parameters (identifier_self) identifier_self (identifier_low) identifier_low )parameters (block (expression_statement (assignment (identifier_kwargs) identifier_kwargs (call (attribute (identifier_copy) identifier_copy (identifier_deepcopy) identifier_deepcopy )attribute (argument_list (identifier_low) identifier_low )argument_list )call )assignment )expression_statement (for_statement (identifier_ignore) identifier_ignore (list (string_'tgt') string_'tgt' (string_'fun') string_'fun' (string_'arg') string_'arg' (string_'timeout') string_'timeout' (string_'tgt_type') string_'tgt_type' (string_'kwarg') string_'kwarg' )list (block (if_statement (comparison_operator (identifier_ignore) identifier_ignore (identifier_kwargs) identifier_kwargs )comparison_operator (block (delete_statement (subscript (identifier_kwargs) identifier_kwargs (identifier_ignore) identifier_ignore )subscript )delete_statement )block )if_statement )block )for_statement (return_statement (call (attribute (identifier_self) identifier_self (identifier_cmd) identifier_cmd )attribute (argument_list (subscript (identifier_low) identifier_low (string_'tgt') string_'tgt' )subscript (subscript (identifier_low) identifier_low (string_'fun') string_'fun' )subscript (call (attribute (identifier_low) identifier_low (identifier_get) identifier_get )attribute (argument_list (string_'arg') string_'arg' (list )list )argument_list )call (call (attribute (identifier_low) identifier_low (identifier_get) identifier_get )attribute (argument_list (string_'timeout') string_'timeout' )argument_list )call (call (attribute (identifier_low) identifier_low (identifier_get) identifier_get )attribute (argument_list (string_'tgt_type') string_'tgt_type' )argument_list )call (call (attribute (identifier_low) identifier_low (identifier_get) identifier_get )attribute (argument_list (string_'kwarg') string_'kwarg' )argument_list )call (dictionary_splat (identifier_kwargs) identifier_kwargs )dictionary_splat )argument_list )call )return_statement )block )function_definition )module
Execute a salt-ssh call synchronously. .. versionadded:: 2015.5.0 WARNING: Eauth is **NOT** respected .. code-block:: python client.cmd_sync({ 'tgt': 'silver', 'fun': 'test.ping', 'arg': (), 'tgt_type'='glob', 'kwarg'={} }) {'silver': {'fun_args': [], 'jid': '20141202152721523072', 'return': True, 'retcode': 0, 'success': True, 'fun': 'test.ping', 'id': 'silver'}}
(module (function_definition (function_name_attach_image) function_name_attach_image (parameters (identifier_field) identifier_field (identifier_nested_fields) identifier_nested_fields (identifier_page) identifier_page (default_parameter (identifier_record_keeper) identifier_record_keeper (None) None )default_parameter )parameters (block (if_statement (boolean_operator (parenthesized_expression (comparison_operator (identifier_field) identifier_field (identifier_nested_fields) identifier_nested_fields )comparison_operator )parenthesized_expression (subscript (identifier_nested_fields) identifier_nested_fields (identifier_field) identifier_field )subscript )boolean_operator (block (expression_statement (assignment (identifier_foreign_image_id) identifier_foreign_image_id (subscript (subscript (identifier_nested_fields) identifier_nested_fields (identifier_field) identifier_field )subscript (string_"id") string_"id" )subscript )assignment )expression_statement (if_statement (identifier_record_keeper) identifier_record_keeper (block (try_statement (block (expression_statement (assignment (identifier_local_image_id) identifier_local_image_id (call (attribute (identifier_record_keeper) identifier_record_keeper (identifier_get_local_image) identifier_get_local_image )attribute (argument_list (identifier_foreign_image_id) identifier_foreign_image_id )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_local_image) identifier_local_image (call (attribute (attribute (identifier_Image) identifier_Image (identifier_objects) identifier_objects )attribute (identifier_get) identifier_get )attribute (argument_list (keyword_argument (identifier_id) identifier_id (identifier_local_image_id) identifier_local_image_id )keyword_argument )argument_list )call )assignment )expression_statement (expression_statement (call (identifier_setattr) identifier_setattr (argument_list (identifier_page) identifier_page (identifier_field) identifier_field (identifier_local_image) identifier_local_image )argument_list )call )expression_statement )block (except_clause (identifier_ObjectDoesNotExist) identifier_ObjectDoesNotExist (block (raise_statement (call (identifier_ObjectDoesNotExist) identifier_ObjectDoesNotExist (argument_list (parenthesized_expression (concatenated_string (string_"executing attach_image: local image referenced") string_"executing attach_image: local image referenced" (string_"in record_keeper does not actually exist.") string_"in record_keeper does not actually exist." )concatenated_string )parenthesized_expression (None) None )argument_list )call )raise_statement )block )except_clause (except_clause (identifier_Exception) identifier_Exception (block (raise_statement )raise_statement )block )except_clause )try_statement )block (else_clause (block (raise_statement (call (identifier_Exception) identifier_Exception (argument_list (parenthesized_expression (concatenated_string (string_"Attempted to attach image without record_keeper. ") string_"Attempted to attach image without record_keeper. " (string_"This functionality is not yet implemented") string_"This functionality is not yet implemented" )concatenated_string )parenthesized_expression )argument_list )call )raise_statement )block )else_clause )if_statement )block )if_statement )block )function_definition )module
Returns a function that attaches an image to page if it exists Currenlty assumes that images have already been imported and info has been stored in record_keeper
(module (function_definition (function_name_singleOrPair) function_name_singleOrPair (parameters (identifier_obj) identifier_obj )parameters (block (if_statement (comparison_operator (call (identifier_len) identifier_len (argument_list (call (identifier_list) identifier_list (argument_list (attribute (attribute (identifier_obj) identifier_obj (identifier___class__) identifier___class__ )attribute (identifier___mro__) identifier___mro__ )attribute )argument_list )call )argument_list )call (integer_2) integer_2 )comparison_operator (block (return_statement (string_'Neither') string_'Neither' )return_statement )block (else_clause (block (if_statement (comparison_operator (call (identifier_ancestorJr) identifier_ancestorJr (argument_list (identifier_obj) identifier_obj )argument_list )call (identifier_Pair) identifier_Pair )comparison_operator (block (return_statement (string_'Pair') string_'Pair' )return_statement )block (elif_clause (comparison_operator (call (identifier_ancestor) identifier_ancestor (argument_list (identifier_obj) identifier_obj )argument_list )call (identifier_Single) identifier_Single )comparison_operator (block (return_statement (string_'Single') string_'Single' )return_statement )block )elif_clause (else_clause (block (return_statement (string_'Neither') string_'Neither' )return_statement )block )else_clause )if_statement )block )else_clause )if_statement )block )function_definition )module
Chech an object is single or pair or neither. Of course,, all pairs are single, so what the function is really detecting is whether an object is only single or at the same time a pair. Args: obj (object): Literally anything. Returns: str: 'Single', or 'Pair', or 'Neither'
(module (function_definition (function_name_version) function_name_version (parameters (identifier_self) identifier_self (default_parameter (identifier_context) identifier_context (None) None )default_parameter )parameters (block (if_statement (boolean_operator (attribute (identifier_self) identifier_self (identifier_replaces_scope) identifier_replaces_scope )attribute (attribute (identifier_self) identifier_self (identifier_replaces_name) identifier_replaces_name )attribute )boolean_operator (block (if_statement (identifier_context) identifier_context (block (expression_statement (assignment (identifier_old_opts) identifier_old_opts (call (attribute (attribute (identifier_context) identifier_context (identifier_options) identifier_options )attribute (identifier_for_scope) identifier_for_scope )attribute (argument_list (attribute (identifier_self) identifier_self (identifier_replaces_scope) identifier_replaces_scope )attribute )argument_list )call )assignment )expression_statement (if_statement (boolean_operator (call (attribute (identifier_old_opts) identifier_old_opts (identifier_get) identifier_get )attribute (argument_list (attribute (identifier_self) identifier_self (identifier_replaces_name) identifier_replaces_name )attribute )argument_list )call (not_operator (call (attribute (identifier_old_opts) identifier_old_opts (identifier_is_default) identifier_is_default )attribute (argument_list (attribute (identifier_self) identifier_self (identifier_replaces_name) identifier_replaces_name )attribute )argument_list )call )not_operator )boolean_operator (block (return_statement (call (attribute (identifier_old_opts) identifier_old_opts (identifier_get) identifier_get )attribute (argument_list (attribute (identifier_self) identifier_self (identifier_replaces_name) identifier_replaces_name )attribute )argument_list )call )return_statement )block )if_statement )block (else_clause (block (expression_statement (call (attribute (identifier_logger) identifier_logger (identifier_warn) identifier_warn )attribute (argument_list (call (attribute (concatenated_string (string_'Cannot resolve version of {} from deprecated option {} in scope {} without a ') string_'Cannot resolve version of {} from deprecated option {} in scope {} without a ' (string_'context!') string_'context!' )concatenated_string (identifier_format) identifier_format )attribute (argument_list (call (attribute (identifier_self) identifier_self (identifier__get_name) identifier__get_name )attribute (argument_list )argument_list )call (attribute (identifier_self) identifier_self (identifier_replaces_name) identifier_replaces_name )attribute (attribute (identifier_self) identifier_self (identifier_replaces_scope) identifier_replaces_scope )attribute )argument_list )call )argument_list )call )expression_statement )block )else_clause )if_statement )block )if_statement (return_statement (attribute (call (attribute (identifier_self) identifier_self (identifier_get_options) identifier_get_options )attribute (argument_list )argument_list )call (identifier_version) identifier_version )attribute )return_statement )block )function_definition )module
Returns the version of the specified binary tool. If replaces_scope and replaces_name are defined, then the caller must pass in a context, otherwise no context should be passed. # TODO: Once we're migrated, get rid of the context arg. :API: public
(module (function_definition (function_name_apply_single_tag_set) function_name_apply_single_tag_set (parameters (identifier_tag_set) identifier_tag_set (identifier_selection) identifier_selection )parameters (block (function_definition (function_name_tags_match) function_name_tags_match (parameters (identifier_server_tags) identifier_server_tags )parameters (block (for_statement (pattern_list (identifier_key) identifier_key (identifier_value) identifier_value )pattern_list (call (attribute (identifier_tag_set) identifier_tag_set (identifier_items) identifier_items )attribute (argument_list )argument_list )call (block (if_statement (boolean_operator (comparison_operator (identifier_key) identifier_key (identifier_server_tags) identifier_server_tags )comparison_operator (comparison_operator (subscript (identifier_server_tags) identifier_server_tags (identifier_key) identifier_key )subscript (identifier_value) identifier_value )comparison_operator )boolean_operator (block (return_statement (False) False )return_statement )block )if_statement )block )for_statement (return_statement (True) True )return_statement )block )function_definition (return_statement (call (attribute (identifier_selection) identifier_selection (identifier_with_server_descriptions) identifier_with_server_descriptions )attribute (argument_list (list_comprehension (identifier_s) identifier_s (for_in_clause (identifier_s) identifier_s (attribute (identifier_selection) identifier_selection (identifier_server_descriptions) identifier_server_descriptions )attribute )for_in_clause (if_clause (call (identifier_tags_match) identifier_tags_match (argument_list (attribute (identifier_s) identifier_s (identifier_tags) identifier_tags )attribute )argument_list )call )if_clause )list_comprehension )argument_list )call )return_statement )block )function_definition )module
All servers matching one tag set. A tag set is a dict. A server matches if its tags are a superset: A server tagged {'a': '1', 'b': '2'} matches the tag set {'a': '1'}. The empty tag set {} matches any server.
(module (function_definition (function_name_load_profiles) function_name_load_profiles (parameters (identifier_self) identifier_self (default_parameter (identifier_overwrite) identifier_overwrite (False) False )default_parameter )parameters (block (for_statement (identifier_profile) identifier_profile (call (attribute (attribute (identifier_self) identifier_self (identifier_minimum_needs) identifier_minimum_needs )attribute (identifier_get_profiles) identifier_get_profiles )attribute (argument_list (identifier_overwrite) identifier_overwrite )argument_list )call (block (expression_statement (call (attribute (attribute (identifier_self) identifier_self (identifier_profile_combo) identifier_profile_combo )attribute (identifier_addItem) identifier_addItem )attribute (argument_list (identifier_profile) identifier_profile )argument_list )call )expression_statement )block )for_statement (expression_statement (assignment (identifier_minimum_needs) identifier_minimum_needs (call (attribute (attribute (identifier_self) identifier_self (identifier_minimum_needs) identifier_minimum_needs )attribute (identifier_get_full_needs) identifier_get_full_needs )attribute (argument_list )argument_list )call )assignment )expression_statement (expression_statement (call (attribute (attribute (identifier_self) identifier_self (identifier_profile_combo) identifier_profile_combo )attribute (identifier_setCurrentIndex) identifier_setCurrentIndex )attribute (argument_list (call (attribute (attribute (identifier_self) identifier_self (identifier_profile_combo) identifier_profile_combo )attribute (identifier_findText) identifier_findText )attribute (argument_list (subscript (identifier_minimum_needs) identifier_minimum_needs (string_'profile') string_'profile' )subscript )argument_list )call )argument_list )call )expression_statement )block )function_definition )module
Load the profiles into the dropdown list. :param overwrite: If we overwrite existing profiles from the plugin. :type overwrite: bool
(module (function_definition (function_name_show_detailed_monitoring) function_name_show_detailed_monitoring (parameters (default_parameter (identifier_name) identifier_name (None) None )default_parameter (default_parameter (identifier_instance_id) identifier_instance_id (None) None )default_parameter (default_parameter (identifier_call) identifier_call (None) None )default_parameter (default_parameter (identifier_quiet) identifier_quiet (False) False )default_parameter )parameters (block (if_statement (comparison_operator (identifier_call) identifier_call (string_'action') string_'action' )comparison_operator (block (raise_statement (call (identifier_SaltCloudSystemExit) identifier_SaltCloudSystemExit (argument_list (string_'The show_detailed_monitoring action must be called with -a or --action.') string_'The show_detailed_monitoring action must be called with -a or --action.' )argument_list )call )raise_statement )block )if_statement (expression_statement (assignment (identifier_location) identifier_location (call (identifier_get_location) identifier_get_location (argument_list )argument_list )call )assignment )expression_statement (if_statement (boolean_operator (call (attribute (call (attribute (identifier_six) identifier_six (identifier_text_type) identifier_text_type )attribute (argument_list (identifier_name) identifier_name )argument_list )call (identifier_startswith) identifier_startswith )attribute (argument_list (string_'i-') string_'i-' )argument_list )call (parenthesized_expression (boolean_operator (comparison_operator (call (identifier_len) identifier_len (argument_list (identifier_name) identifier_name )argument_list )call (integer_10) integer_10 )comparison_operator (comparison_operator (call (identifier_len) identifier_len (argument_list (identifier_name) identifier_name )argument_list )call (integer_19) integer_19 )comparison_operator )boolean_operator )parenthesized_expression )boolean_operator (block (expression_statement (assignment (identifier_instance_id) identifier_instance_id (identifier_name) identifier_name )assignment )expression_statement )block )if_statement (if_statement (boolean_operator (not_operator (identifier_name) identifier_name )not_operator (not_operator (identifier_instance_id) identifier_instance_id )not_operator )boolean_operator (block (raise_statement (call (identifier_SaltCloudSystemExit) identifier_SaltCloudSystemExit (argument_list (string_'The show_detailed_monitoring action must be provided with a name or instance\ ID') string_'The show_detailed_monitoring action must be provided with a name or instance\ ID' )argument_list )call )raise_statement )block )if_statement (expression_statement (assignment (identifier_matched) identifier_matched (call (identifier__get_node) identifier__get_node (argument_list (keyword_argument (identifier_name) identifier_name (identifier_name) identifier_name )keyword_argument (keyword_argument (identifier_instance_id) identifier_instance_id (identifier_instance_id) identifier_instance_id )keyword_argument (keyword_argument (identifier_location) identifier_location (identifier_location) identifier_location )keyword_argument )argument_list )call )assignment )expression_statement (expression_statement (call (attribute (identifier_log) identifier_log (identifier_log) identifier_log )attribute (argument_list (conditional_expression (attribute (identifier_logging) identifier_logging (identifier_DEBUG) identifier_DEBUG )attribute (comparison_operator (identifier_quiet) identifier_quiet (True) True )comparison_operator (attribute (identifier_logging) identifier_logging (identifier_INFO) identifier_INFO )attribute )conditional_expression (string_'Detailed Monitoring is %s for %s') string_'Detailed Monitoring is %s for %s' (subscript (identifier_matched) identifier_matched (string_'monitoring') string_'monitoring' )subscript (identifier_name) identifier_name )argument_list )call )expression_statement (return_statement (subscript (identifier_matched) identifier_matched (string_'monitoring') string_'monitoring' )subscript )return_statement )block )function_definition )module
Show the details from EC2 regarding cloudwatch detailed monitoring.
(module (function_definition (function_name__wait_output) function_name__wait_output (parameters (identifier_popen) identifier_popen (identifier_is_slow) identifier_is_slow )parameters (block (expression_statement (assignment (identifier_proc) identifier_proc (call (identifier_Process) identifier_Process (argument_list (attribute (identifier_popen) identifier_popen (identifier_pid) identifier_pid )attribute )argument_list )call )assignment )expression_statement (try_statement (block (expression_statement (call (attribute (identifier_proc) identifier_proc (identifier_wait) identifier_wait )attribute (argument_list (conditional_expression (attribute (identifier_settings) identifier_settings (identifier_wait_slow_command) identifier_wait_slow_command )attribute (identifier_is_slow) identifier_is_slow (attribute (identifier_settings) identifier_settings (identifier_wait_command) identifier_wait_command )attribute )conditional_expression )argument_list )call )expression_statement (return_statement (True) True )return_statement )block (except_clause (identifier_TimeoutExpired) identifier_TimeoutExpired (block (for_statement (identifier_child) identifier_child (call (attribute (identifier_proc) identifier_proc (identifier_children) identifier_children )attribute (argument_list (keyword_argument (identifier_recursive) identifier_recursive (True) True )keyword_argument )argument_list )call (block (expression_statement (call (identifier__kill_process) identifier__kill_process (argument_list (identifier_child) identifier_child )argument_list )call )expression_statement )block )for_statement (expression_statement (call (identifier__kill_process) identifier__kill_process (argument_list (identifier_proc) identifier_proc )argument_list )call )expression_statement (return_statement (False) False )return_statement )block )except_clause )try_statement )block )function_definition )module
Returns `True` if we can get output of the command in the `settings.wait_command` time. Command will be killed if it wasn't finished in the time. :type popen: Popen :rtype: bool
(module (function_definition (function_name_display) function_name_display (parameters (identifier_self) identifier_self )parameters (block (expression_statement (assignment (pattern_list (identifier_w) identifier_w (identifier_h) identifier_h )pattern_list (tuple (integer_0) integer_0 (integer_0) integer_0 )tuple )assignment )expression_statement (for_statement (identifier_line) identifier_line (call (attribute (call (attribute (identifier_self) identifier_self (identifier_shell) identifier_shell )attribute (argument_list (string_'dumpsys') string_'dumpsys' (string_'display') string_'display' )argument_list )call (identifier_splitlines) identifier_splitlines )attribute (argument_list )argument_list )call (block (expression_statement (assignment (identifier_m) identifier_m (call (attribute (identifier__DISPLAY_RE) identifier__DISPLAY_RE (identifier_search) identifier_search )attribute (argument_list (identifier_line) identifier_line (integer_0) integer_0 )argument_list )call )assignment )expression_statement (if_statement (not_operator (identifier_m) identifier_m )not_operator (block (continue_statement )continue_statement )block )if_statement (expression_statement (assignment (identifier_w) identifier_w (call (identifier_int) identifier_int (argument_list (call (attribute (identifier_m) identifier_m (identifier_group) identifier_group )attribute (argument_list (string_'width') string_'width' )argument_list )call )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_h) identifier_h (call (identifier_int) identifier_int (argument_list (call (attribute (identifier_m) identifier_m (identifier_group) identifier_group )attribute (argument_list (string_'height') string_'height' )argument_list )call )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_o) identifier_o (call (identifier_int) identifier_int (argument_list (call (attribute (identifier_m) identifier_m (identifier_group) identifier_group )attribute (argument_list (string_'orientation') string_'orientation' )argument_list )call )argument_list )call )assignment )expression_statement (expression_statement (assignment (pattern_list (identifier_w) identifier_w (identifier_h) identifier_h )pattern_list (expression_list (call (identifier_min) identifier_min (argument_list (identifier_w) identifier_w (identifier_h) identifier_h )argument_list )call (call (identifier_max) identifier_max (argument_list (identifier_w) identifier_w (identifier_h) identifier_h )argument_list )call )expression_list )assignment )expression_statement (return_statement (call (attribute (identifier_self) identifier_self (identifier_Display) identifier_Display )attribute (argument_list (identifier_w) identifier_w (identifier_h) identifier_h (identifier_o) identifier_o )argument_list )call )return_statement )block )for_statement (expression_statement (assignment (identifier_output) identifier_output (call (attribute (identifier_self) identifier_self (identifier_shell) identifier_shell )attribute (argument_list (string_'LD_LIBRARY_PATH=/data/local/tmp') string_'LD_LIBRARY_PATH=/data/local/tmp' (attribute (identifier_self) identifier_self (identifier___minicap) identifier___minicap )attribute (string_'-i') string_'-i' )argument_list )call )assignment )expression_statement (try_statement (block (expression_statement (assignment (identifier_data) identifier_data (call (attribute (identifier_json) identifier_json (identifier_loads) identifier_loads )attribute (argument_list (identifier_output) identifier_output )argument_list )call )assignment )expression_statement (expression_statement (assignment (tuple_pattern (identifier_w) identifier_w (identifier_h) identifier_h (identifier_o) identifier_o )tuple_pattern (tuple (subscript (identifier_data) identifier_data (string_'width') string_'width' )subscript (subscript (identifier_data) identifier_data (string_'height') string_'height' )subscript (binary_operator (subscript (identifier_data) identifier_data (string_'rotation') string_'rotation' )subscript (integer_90) integer_90 )binary_operator )tuple )assignment )expression_statement (return_statement (call (attribute (identifier_self) identifier_self (identifier_Display) identifier_Display )attribute (argument_list (identifier_w) identifier_w (identifier_h) identifier_h (identifier_o) identifier_o )argument_list )call )return_statement )block (except_clause (identifier_ValueError) identifier_ValueError (block (pass_statement )pass_statement )block )except_clause )try_statement )block )function_definition )module
Return device width, height, rotation
(module (function_definition (function_name_constructRows) function_name_constructRows (parameters (identifier_self) identifier_self (identifier_items) identifier_items )parameters (block (expression_statement (assignment (identifier_rows) identifier_rows (list )list )assignment )expression_statement (for_statement (identifier_item) identifier_item (identifier_items) identifier_items (block (expression_statement (assignment (identifier_row) identifier_row (call (identifier_dict) identifier_dict (generator_expression (tuple (identifier_colname) identifier_colname (call (attribute (identifier_col) identifier_col (identifier_extractValue) identifier_extractValue )attribute (argument_list (identifier_self) identifier_self (identifier_item) identifier_item )argument_list )call )tuple (for_in_clause (tuple_pattern (identifier_colname) identifier_colname (identifier_col) identifier_col )tuple_pattern (call (attribute (attribute (identifier_self) identifier_self (identifier_columns) identifier_columns )attribute (identifier_iteritems) identifier_iteritems )attribute (argument_list )argument_list )call )for_in_clause )generator_expression )call )assignment )expression_statement (expression_statement (assignment (identifier_link) identifier_link (call (attribute (identifier_self) identifier_self (identifier_linkToItem) identifier_linkToItem )attribute (argument_list (identifier_item) identifier_item )argument_list )call )assignment )expression_statement (if_statement (comparison_operator (identifier_link) identifier_link (None) None )comparison_operator (block (expression_statement (assignment (subscript (identifier_row) identifier_row (string_u'__id__') string_u'__id__' )subscript (identifier_link) identifier_link )assignment )expression_statement )block )if_statement (expression_statement (call (attribute (identifier_rows) identifier_rows (identifier_append) identifier_append )attribute (argument_list (identifier_row) identifier_row )argument_list )call )expression_statement )block )for_statement (return_statement (identifier_rows) identifier_rows )return_statement )block )function_definition )module
Build row objects that are serializable using Athena for sending to the client. @param items: an iterable of objects compatible with my columns' C{extractValue} methods. @return: a list of dictionaries, where each dictionary has a string key for each column name in my list of columns.
(module (function_definition (function_name_get_command_templates) function_name_get_command_templates (parameters (identifier_command_tokens) identifier_command_tokens (default_parameter (identifier_file_tokens) identifier_file_tokens (list )list )default_parameter (default_parameter (identifier_path_tokens) identifier_path_tokens (list )list )default_parameter (default_parameter (identifier_job_options) identifier_job_options (list )list )default_parameter )parameters (block (expression_statement (assignment (identifier_files) identifier_files (call (identifier_get_files) identifier_get_files (argument_list (identifier_file_tokens) identifier_file_tokens )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_paths) identifier_paths (call (identifier_get_paths) identifier_get_paths (argument_list (identifier_path_tokens) identifier_path_tokens )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_job_options) identifier_job_options (call (identifier_get_options) identifier_get_options (argument_list (identifier_job_options) identifier_job_options )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_templates) identifier_templates (call (identifier__get_command_templates) identifier__get_command_templates (argument_list (identifier_command_tokens) identifier_command_tokens (identifier_files) identifier_files (identifier_paths) identifier_paths (identifier_job_options) identifier_job_options )argument_list )call )assignment )expression_statement (for_statement (identifier_command_template) identifier_command_template (identifier_templates) identifier_templates (block (expression_statement (assignment (attribute (identifier_command_template) identifier_command_template (identifier__dependencies) identifier__dependencies )attribute (call (identifier__get_prelim_dependencies) identifier__get_prelim_dependencies (argument_list (identifier_command_template) identifier_command_template (identifier_templates) identifier_templates )argument_list )call )assignment )expression_statement )block )for_statement (return_statement (identifier_templates) identifier_templates )return_statement )block )function_definition )module
Given a list of tokens from the grammar, return a list of commands.
(module (function_definition (function_name__generate_default_grp_constraints) function_name__generate_default_grp_constraints (parameters (identifier_roles) identifier_roles (identifier_network_constraints) identifier_network_constraints )parameters (block (expression_statement (assignment (identifier_default_delay) identifier_default_delay (call (attribute (identifier_network_constraints) identifier_network_constraints (identifier_get) identifier_get )attribute (argument_list (string_'default_delay') string_'default_delay' )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_default_rate) identifier_default_rate (call (attribute (identifier_network_constraints) identifier_network_constraints (identifier_get) identifier_get )attribute (argument_list (string_'default_rate') string_'default_rate' )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_default_loss) identifier_default_loss (call (attribute (identifier_network_constraints) identifier_network_constraints (identifier_get) identifier_get )attribute (argument_list (string_'default_loss') string_'default_loss' (integer_0) integer_0 )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_except_groups) identifier_except_groups (call (attribute (identifier_network_constraints) identifier_network_constraints (identifier_get) identifier_get )attribute (argument_list (string_'except') string_'except' (list )list )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_grps) identifier_grps (call (attribute (identifier_network_constraints) identifier_network_constraints (identifier_get) identifier_get )attribute (argument_list (string_'groups') string_'groups' (call (attribute (identifier_roles) identifier_roles (identifier_keys) identifier_keys )attribute (argument_list )argument_list )call )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_grps) identifier_grps (list_comprehension (call (identifier_expand_groups) identifier_expand_groups (argument_list (identifier_g) identifier_g )argument_list )call (for_in_clause (identifier_g) identifier_g (identifier_grps) identifier_grps )for_in_clause )list_comprehension )assignment )expression_statement (expression_statement (assignment (identifier_grps) identifier_grps (list_comprehension (identifier_x) identifier_x (for_in_clause (identifier_expanded_group) identifier_expanded_group (identifier_grps) identifier_grps )for_in_clause (for_in_clause (identifier_x) identifier_x (identifier_expanded_group) identifier_expanded_group )for_in_clause )list_comprehension )assignment )expression_statement (return_statement (list_comprehension (dictionary (pair (string_'src') string_'src' (identifier_grp1) identifier_grp1 )pair (pair (string_'dst') string_'dst' (identifier_grp2) identifier_grp2 )pair (pair (string_'delay') string_'delay' (identifier_default_delay) identifier_default_delay )pair (pair (string_'rate') string_'rate' (identifier_default_rate) identifier_default_rate )pair (pair (string_'loss') string_'loss' (identifier_default_loss) identifier_default_loss )pair )dictionary (for_in_clause (identifier_grp1) identifier_grp1 (identifier_grps) identifier_grps )for_in_clause (for_in_clause (identifier_grp2) identifier_grp2 (identifier_grps) identifier_grps )for_in_clause (if_clause (parenthesized_expression (boolean_operator (boolean_operator (parenthesized_expression (boolean_operator (comparison_operator (identifier_grp1) identifier_grp1 (identifier_grp2) identifier_grp2 )comparison_operator (call (identifier__src_equals_dst_in_constraints) identifier__src_equals_dst_in_constraints (argument_list (identifier_network_constraints) identifier_network_constraints (identifier_grp1) identifier_grp1 )argument_list )call )boolean_operator )parenthesized_expression (comparison_operator (identifier_grp1) identifier_grp1 (identifier_except_groups) identifier_except_groups )comparison_operator )boolean_operator (comparison_operator (identifier_grp2) identifier_grp2 (identifier_except_groups) identifier_except_groups )comparison_operator )boolean_operator )parenthesized_expression )if_clause )list_comprehension )return_statement )block )function_definition )module
Generate default symetric grp constraints.
(module (function_definition (function_name_run) function_name_run (parameters (default_parameter (identifier_host) identifier_host (string_'0.0.0.0') string_'0.0.0.0' )default_parameter (default_parameter (identifier_port) identifier_port (integer_5000) integer_5000 )default_parameter (default_parameter (identifier_reload) identifier_reload (True) True )default_parameter (default_parameter (identifier_debug) identifier_debug (True) True )default_parameter )parameters (block (import_from_statement (dotted_name (identifier_werkzeug) identifier_werkzeug (identifier_serving) identifier_serving )dotted_name (dotted_name (identifier_run_simple) identifier_run_simple )dotted_name )import_from_statement (expression_statement (assignment (identifier_app) identifier_app (call (attribute (identifier_bootstrap) identifier_bootstrap (identifier_get_app) identifier_get_app )attribute (argument_list )argument_list )call )assignment )expression_statement (return_statement (call (identifier_run_simple) identifier_run_simple (argument_list (keyword_argument (identifier_hostname) identifier_hostname (identifier_host) identifier_host )keyword_argument (keyword_argument (identifier_port) identifier_port (identifier_port) identifier_port )keyword_argument (keyword_argument (identifier_application) identifier_application (identifier_app) identifier_app )keyword_argument (keyword_argument (identifier_use_reloader) identifier_use_reloader (identifier_reload) identifier_reload )keyword_argument (keyword_argument (identifier_use_debugger) identifier_use_debugger (identifier_debug) identifier_debug )keyword_argument )argument_list )call )return_statement )block )function_definition )module
Run development server
(module (function_definition (function_name__highlight_lines) function_name__highlight_lines (parameters (identifier_self) identifier_self (identifier_tokensource) identifier_tokensource )parameters (block (expression_statement (assignment (identifier_hls) identifier_hls (attribute (identifier_self) identifier_self (identifier_hl_lines) identifier_hl_lines )attribute )assignment )expression_statement (for_statement (pattern_list (identifier_i) identifier_i (tuple_pattern (identifier_t) identifier_t (identifier_value) identifier_value )tuple_pattern )pattern_list (call (identifier_enumerate) identifier_enumerate (argument_list (identifier_tokensource) identifier_tokensource )argument_list )call (block (if_statement (comparison_operator (identifier_t) identifier_t (integer_1) integer_1 )comparison_operator (block (expression_statement (yield (expression_list (identifier_t) identifier_t (identifier_value) identifier_value )expression_list )yield )expression_statement )block )if_statement (if_statement (comparison_operator (binary_operator (identifier_i) identifier_i (integer_1) integer_1 )binary_operator (identifier_hls) identifier_hls )comparison_operator (block (if_statement (attribute (identifier_self) identifier_self (identifier_noclasses) identifier_noclasses )attribute (block (expression_statement (assignment (identifier_style) identifier_style (string_'') string_'' )assignment )expression_statement (if_statement (comparison_operator (attribute (attribute (identifier_self) identifier_self (identifier_style) identifier_style )attribute (identifier_highlight_color) identifier_highlight_color )attribute (None) None )comparison_operator (block (expression_statement (assignment (identifier_style) identifier_style (parenthesized_expression (binary_operator (string_' style="background-color: %s"') string_' style="background-color: %s"' (tuple (attribute (attribute (identifier_self) identifier_self (identifier_style) identifier_style )attribute (identifier_highlight_color) identifier_highlight_color )attribute )tuple )binary_operator )parenthesized_expression )assignment )expression_statement )block )if_statement (expression_statement (yield (expression_list (integer_1) integer_1 (binary_operator (string_'<span%s>%s</span>') string_'<span%s>%s</span>' (tuple (identifier_style) identifier_style (identifier_value) identifier_value )tuple )binary_operator )expression_list )yield )expression_statement )block (else_clause (block (expression_statement (yield (expression_list (integer_1) integer_1 (binary_operator (string_'<span class="hll">%s</span>') string_'<span class="hll">%s</span>' (identifier_value) identifier_value )binary_operator )expression_list )yield )expression_statement )block )else_clause )if_statement )block (else_clause (block (expression_statement (yield (expression_list (integer_1) integer_1 (identifier_value) identifier_value )expression_list )yield )expression_statement )block )else_clause )if_statement )block )for_statement )block )function_definition )module
Highlighted the lines specified in the `hl_lines` option by post-processing the token stream coming from `_format_lines`.
(module (function_definition (function_name_smooth_angle_channels) function_name_smooth_angle_channels (parameters (identifier_self) identifier_self (identifier_channels) identifier_channels )parameters (block (for_statement (identifier_vertex) identifier_vertex (attribute (identifier_self) identifier_self (identifier_vertices) identifier_vertices )attribute (block (for_statement (identifier_col) identifier_col (subscript (attribute (identifier_vertex) identifier_vertex (identifier_meta) identifier_meta )attribute (string_'rot_ind') string_'rot_ind' )subscript (block (if_statement (identifier_col) identifier_col (block (for_statement (identifier_k) identifier_k (call (identifier_range) identifier_range (argument_list (integer_1) integer_1 (subscript (attribute (identifier_channels) identifier_channels (identifier_shape) identifier_shape )attribute (integer_0) integer_0 )subscript )argument_list )call (block (expression_statement (assignment (identifier_diff) identifier_diff (binary_operator (subscript (identifier_channels) identifier_channels (identifier_k) identifier_k (identifier_col) identifier_col )subscript (subscript (identifier_channels) identifier_channels (binary_operator (identifier_k) identifier_k (integer_1) integer_1 )binary_operator (identifier_col) identifier_col )subscript )binary_operator )assignment )expression_statement )block )for_statement (if_statement (comparison_operator (call (identifier_abs) identifier_abs (argument_list (binary_operator (identifier_diff) identifier_diff (float_360.) float_360. )binary_operator )argument_list )call (call (identifier_abs) identifier_abs (argument_list (identifier_diff) identifier_diff )argument_list )call )comparison_operator (block (expression_statement (assignment (subscript (identifier_channels) identifier_channels (slice (identifier_k) identifier_k (colon) colon )slice (identifier_col) identifier_col )subscript (binary_operator (subscript (identifier_channels) identifier_channels (slice (identifier_k) identifier_k (colon) colon )slice (identifier_col) identifier_col )subscript (float_360.) float_360. )binary_operator )assignment )expression_statement )block (elif_clause (comparison_operator (call (identifier_abs) identifier_abs (argument_list (binary_operator (identifier_diff) identifier_diff (float_360.) float_360. )binary_operator )argument_list )call (call (identifier_abs) identifier_abs (argument_list (identifier_diff) identifier_diff )argument_list )call )comparison_operator (block (expression_statement (assignment (subscript (identifier_channels) identifier_channels (slice (identifier_k) identifier_k (colon) colon )slice (identifier_col) identifier_col )subscript (binary_operator (subscript (identifier_channels) identifier_channels (slice (identifier_k) identifier_k (colon) colon )slice (identifier_col) identifier_col )subscript (float_360.) float_360. )binary_operator )assignment )expression_statement )block )elif_clause )if_statement )block )if_statement )block )for_statement )block )for_statement )block )function_definition )module
Remove discontinuities in angle channels so that they don't cause artifacts in algorithms that rely on the smoothness of the functions.
(module (function_definition (function_name_finalize_sv) function_name_finalize_sv (parameters (identifier_orig_vcf) identifier_orig_vcf (identifier_data) identifier_data (identifier_items) identifier_items )parameters (block (expression_statement (assignment (identifier_paired) identifier_paired (call (attribute (identifier_vcfutils) identifier_vcfutils (identifier_get_paired) identifier_get_paired )attribute (argument_list (identifier_items) identifier_items )argument_list )call )assignment )expression_statement (if_statement (identifier_paired) identifier_paired (block (expression_statement (assignment (identifier_sample_vcf) identifier_sample_vcf (conditional_expression (identifier_orig_vcf) identifier_orig_vcf (comparison_operator (attribute (identifier_paired) identifier_paired (identifier_tumor_name) identifier_tumor_name )attribute (call (attribute (identifier_dd) identifier_dd (identifier_get_sample_name) identifier_get_sample_name )attribute (argument_list (identifier_data) identifier_data )argument_list )call )comparison_operator (None) None )conditional_expression )assignment )expression_statement )block (else_clause (block (expression_statement (assignment (identifier_sample_vcf) identifier_sample_vcf (binary_operator (string_"%s-%s.vcf.gz") string_"%s-%s.vcf.gz" (tuple (subscript (call (attribute (identifier_utils) identifier_utils (identifier_splitext_plus) identifier_splitext_plus )attribute (argument_list (identifier_orig_vcf) identifier_orig_vcf )argument_list )call (integer_0) integer_0 )subscript (call (attribute (identifier_dd) identifier_dd (identifier_get_sample_name) identifier_get_sample_name )attribute (argument_list (identifier_data) identifier_data )argument_list )call )tuple )binary_operator )assignment )expression_statement (expression_statement (assignment (identifier_sample_vcf) identifier_sample_vcf (call (attribute (identifier_vcfutils) identifier_vcfutils (identifier_select_sample) identifier_select_sample )attribute (argument_list (identifier_orig_vcf) identifier_orig_vcf (call (attribute (identifier_dd) identifier_dd (identifier_get_sample_name) identifier_get_sample_name )attribute (argument_list (identifier_data) identifier_data )argument_list )call (identifier_sample_vcf) identifier_sample_vcf (subscript (identifier_data) identifier_data (string_"config") string_"config" )subscript )argument_list )call )assignment )expression_statement )block )else_clause )if_statement (if_statement (identifier_sample_vcf) identifier_sample_vcf (block (expression_statement (assignment (pattern_list (identifier_effects_vcf) identifier_effects_vcf (identifier__) identifier__ )pattern_list (call (attribute (identifier_effects) identifier_effects (identifier_add_to_vcf) identifier_add_to_vcf )attribute (argument_list (identifier_sample_vcf) identifier_sample_vcf (identifier_data) identifier_data (string_"snpeff") string_"snpeff" )argument_list )call )assignment )expression_statement )block (else_clause (block (expression_statement (assignment (identifier_effects_vcf) identifier_effects_vcf (None) None )assignment )expression_statement )block )else_clause )if_statement (return_statement (boolean_operator (identifier_effects_vcf) identifier_effects_vcf (identifier_sample_vcf) identifier_sample_vcf )boolean_operator )return_statement )block )function_definition )module
Finalize structural variants, adding effects and splitting if needed.
(module (function_definition (function_name__container_blacklist) function_name__container_blacklist (parameters (identifier_self) identifier_self )parameters (block (if_statement (comparison_operator (attribute (identifier_self) identifier_self (identifier___container_blacklist) identifier___container_blacklist )attribute (None) None )comparison_operator (block (expression_statement (assignment (attribute (identifier_self) identifier_self (identifier___container_blacklist) identifier___container_blacklist )attribute (line_continuation_\) line_continuation_\ (call (identifier_set) identifier_set (argument_list (boolean_operator (attribute (identifier_self) identifier_self (identifier_CLOUD_BROWSER_CONTAINER_BLACKLIST) identifier_CLOUD_BROWSER_CONTAINER_BLACKLIST )attribute (list )list )boolean_operator )argument_list )call )assignment )expression_statement )block )if_statement (return_statement (attribute (identifier_self) identifier_self (identifier___container_blacklist) identifier___container_blacklist )attribute )return_statement )block )function_definition )module
Container blacklist.
(module (function_definition (function_name_replace_uuid_w_names) function_name_replace_uuid_w_names (parameters (identifier_self) identifier_self (identifier_resp) identifier_resp )parameters (block (expression_statement (assignment (identifier_col_mapper) identifier_col_mapper (call (attribute (subscript (call (attribute (identifier_self) identifier_self (identifier_get_point_name) identifier_get_point_name )attribute (argument_list (attribute (identifier_resp) identifier_resp (identifier_context) identifier_context )attribute )argument_list )call (string_"?point") string_"?point" )subscript (identifier_to_dict) identifier_to_dict )attribute (argument_list )argument_list )call )assignment )expression_statement (expression_statement (call (attribute (attribute (identifier_resp) identifier_resp (identifier_df) identifier_df )attribute (identifier_rename) identifier_rename )attribute (argument_list (keyword_argument (identifier_columns) identifier_columns (identifier_col_mapper) identifier_col_mapper )keyword_argument (keyword_argument (identifier_inplace) identifier_inplace (True) True )keyword_argument )argument_list )call )expression_statement (return_statement (identifier_resp) identifier_resp )return_statement )block )function_definition )module
Replace the uuid's with names. Parameters ---------- resp : ??? ??? Returns ------- ??? ???
(module (function_definition (function_name_initialize_page) function_name_initialize_page (parameters (identifier_title) identifier_title (identifier_style) identifier_style (identifier_script) identifier_script (default_parameter (identifier_header) identifier_header (None) None )default_parameter )parameters (block (expression_statement (assignment (identifier_page) identifier_page (call (attribute (identifier_markup) identifier_markup (identifier_page) identifier_page )attribute (argument_list (keyword_argument (identifier_mode) identifier_mode (string_"strict_html") string_"strict_html" )keyword_argument )argument_list )call )assignment )expression_statement (expression_statement (assignment (attribute (identifier_page) identifier_page (identifier__escape) identifier__escape )attribute (False) False )assignment )expression_statement (expression_statement (call (attribute (identifier_page) identifier_page (identifier_init) identifier_init )attribute (argument_list (keyword_argument (identifier_title) identifier_title (identifier_title) identifier_title )keyword_argument (keyword_argument (identifier_css) identifier_css (identifier_style) identifier_style )keyword_argument (keyword_argument (identifier_script) identifier_script (identifier_script) identifier_script )keyword_argument (keyword_argument (identifier_header) identifier_header (identifier_header) identifier_header )keyword_argument )argument_list )call )expression_statement (return_statement (identifier_page) identifier_page )return_statement )block )function_definition )module
A function that returns a markup.py page object with the required html header.
(module (function_definition (function_name_vertex_fingerprints) function_name_vertex_fingerprints (parameters (identifier_self) identifier_self )parameters (block (return_statement (call (attribute (identifier_self) identifier_self (identifier_get_vertex_fingerprints) identifier_get_vertex_fingerprints )attribute (argument_list (list_comprehension (call (attribute (identifier_self) identifier_self (identifier_get_vertex_string) identifier_get_vertex_string )attribute (argument_list (identifier_i) identifier_i )argument_list )call (for_in_clause (identifier_i) identifier_i (call (identifier_range) identifier_range (argument_list (attribute (identifier_self) identifier_self (identifier_num_vertices) identifier_num_vertices )attribute )argument_list )call )for_in_clause )list_comprehension (list_comprehension (call (attribute (identifier_self) identifier_self (identifier_get_edge_string) identifier_get_edge_string )attribute (argument_list (identifier_i) identifier_i )argument_list )call (for_in_clause (identifier_i) identifier_i (call (identifier_range) identifier_range (argument_list (attribute (identifier_self) identifier_self (identifier_num_edges) identifier_num_edges )attribute )argument_list )call )for_in_clause )list_comprehension )argument_list )call )return_statement )block )function_definition )module
A fingerprint for each vertex The result is invariant under permutation of the vertex indexes. Vertices that are symmetrically equivalent will get the same fingerprint, e.g. the hydrogens in methane would get the same fingerprint.
(module (function_definition (function_name_first) function_name_first (parameters (identifier_sequence) identifier_sequence (default_parameter (identifier_message) identifier_message (None) None )default_parameter )parameters (block (try_statement (block (return_statement (call (identifier_next) identifier_next (argument_list (call (identifier_iter) identifier_iter (argument_list (identifier_sequence) identifier_sequence )argument_list )call )argument_list )call )return_statement )block (except_clause (identifier_StopIteration) identifier_StopIteration (block (raise_statement (call (identifier_ValueError) identifier_ValueError (argument_list (boolean_operator (identifier_message) identifier_message (parenthesized_expression (binary_operator (string_'Sequence is empty: %s') string_'Sequence is empty: %s' (identifier_sequence) identifier_sequence )binary_operator )parenthesized_expression )boolean_operator )argument_list )call )raise_statement )block )except_clause )try_statement )block )function_definition )module
The first item in that sequence If there aren't any, raise a ValueError with that message
(module (function_definition (function_name_list_suites) function_name_list_suites (parameters (default_parameter (identifier_suitedir) identifier_suitedir (string_"./testcases/suites") string_"./testcases/suites" )default_parameter (default_parameter (identifier_cloud) identifier_cloud (False) False )default_parameter )parameters (block (expression_statement (assignment (identifier_suites) identifier_suites (list )list )assignment )expression_statement (expression_statement (call (attribute (identifier_suites) identifier_suites (identifier_extend) identifier_extend )attribute (argument_list (call (attribute (identifier_TestSuite) identifier_TestSuite (identifier_get_suite_files) identifier_get_suite_files )attribute (argument_list (identifier_suitedir) identifier_suitedir )argument_list )call )argument_list )call )expression_statement (if_statement (identifier_cloud) identifier_cloud (block (expression_statement (assignment (identifier_names) identifier_names (call (attribute (identifier_cloud) identifier_cloud (identifier_get_campaign_names) identifier_get_campaign_names )attribute (argument_list )argument_list )call )assignment )expression_statement (if_statement (identifier_names) identifier_names (block (expression_statement (call (attribute (identifier_suites) identifier_suites (identifier_append) identifier_append )attribute (argument_list (string_"------------------------------------") string_"------------------------------------" )argument_list )call )expression_statement (expression_statement (call (attribute (identifier_suites) identifier_suites (identifier_append) identifier_append )attribute (argument_list (string_"FROM CLOUD:") string_"FROM CLOUD:" )argument_list )call )expression_statement (expression_statement (call (attribute (identifier_suites) identifier_suites (identifier_extend) identifier_extend )attribute (argument_list (identifier_names) identifier_names )argument_list )call )expression_statement )block )if_statement )block )if_statement (if_statement (not_operator (identifier_suites) identifier_suites )not_operator (block (return_statement (None) None )return_statement )block )if_statement (import_from_statement (dotted_name (identifier_prettytable) identifier_prettytable )dotted_name (dotted_name (identifier_PrettyTable) identifier_PrettyTable )dotted_name )import_from_statement (expression_statement (assignment (identifier_table) identifier_table (call (identifier_PrettyTable) identifier_PrettyTable (argument_list (list (string_"Testcase suites") string_"Testcase suites" )list )argument_list )call )assignment )expression_statement (for_statement (identifier_suite) identifier_suite (identifier_suites) identifier_suites (block (expression_statement (call (attribute (identifier_table) identifier_table (identifier_add_row) identifier_add_row )attribute (argument_list (list (identifier_suite) identifier_suite )list )argument_list )call )expression_statement )block )for_statement (return_statement (identifier_table) identifier_table )return_statement )block )function_definition )module
Static method for listing suites from both local source and cloud. Uses PrettyTable to generate the table. :param suitedir: Local directory for suites. :param cloud: cloud module :return: PrettyTable object or None if no test cases were found