code stringlengths 51 2.34k | sequence stringlengths 186 3.94k | docstring stringlengths 11 171 |
|---|---|---|
def stack_2_eqn(self,p):
stack_eqn = []
if p:
for n in p.stack:
self.eval_eqn(n,stack_eqn)
return stack_eqn[-1]
return [] | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier list if_statement identifier block for_statement identifier attribute identifier identifier block expression_statement call attribute identifier identifier argument_list identifier identifier return_statement subscript identifier unary_operator integer return_statement list | returns equation string for program stack |
def socket_send(self):
if len(self.send_buffer):
try:
sent = self.sock.send(self.send_buffer)
except socket.error, err:
print("!! SEND error '%d:%s' from %s" % (err[0], err[1],
self.addrport()))
self.active = False
return
self.bytes_sent += sent
self.send_buffer = self.send_buffer[sent:]
else:
self.send_pending = False | module function_definition identifier parameters identifier block if_statement call identifier argument_list attribute identifier identifier block try_statement block expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list attribute identifier identifier except_clause attribute identifier identifier identifier block expression_statement call identifier argument_list binary_operator string string_start string_content string_end tuple subscript identifier integer subscript identifier integer call attribute identifier identifier argument_list expression_statement assignment attribute identifier identifier false return_statement expression_statement augmented_assignment attribute identifier identifier identifier expression_statement assignment attribute identifier identifier subscript attribute identifier identifier slice identifier else_clause block expression_statement assignment attribute identifier identifier false | Called by TelnetServer when send data is ready. |
def ListGrrBinaries(context=None):
items = context.SendIteratorRequest("ListGrrBinaries", None)
return utils.MapItemsIterator(
lambda data: GrrBinary(data=data, context=context), items) | module function_definition identifier parameters default_parameter identifier none block expression_statement assignment identifier call attribute identifier identifier argument_list string string_start string_content string_end none return_statement call attribute identifier identifier argument_list lambda lambda_parameters identifier call identifier argument_list keyword_argument identifier identifier keyword_argument identifier identifier identifier | Lists all registered Grr binaries. |
def validate_protocol(protocol):
if not re.match(PROTOCOL_REGEX, protocol):
raise ValueError(f'invalid protocol: {protocol}')
return protocol.lower() | module function_definition identifier parameters identifier block if_statement not_operator call attribute identifier identifier argument_list identifier identifier block raise_statement call identifier argument_list string string_start string_content interpolation identifier string_end return_statement call attribute identifier identifier argument_list | Validate a protocol, a string, and return it. |
def print_title(title: str) -> None:
msg = "**** {} ".format(title)
print("{}{}{}{}".format(Style.BRIGHT, Fore.GREEN, msg, "*" * (80 - len(msg)))) | module function_definition identifier parameters typed_parameter identifier type identifier type none block expression_statement assignment identifier call attribute string string_start string_content string_end identifier argument_list identifier expression_statement call identifier argument_list call attribute string string_start string_content string_end identifier argument_list attribute identifier identifier attribute identifier identifier identifier binary_operator string string_start string_content string_end parenthesized_expression binary_operator integer call identifier argument_list identifier | Helper function to print a title. |
def destroy(name):
node = show_instance(name, call='action')
params = {'SUBID': node['SUBID']}
result = _query('server/destroy', method='POST', decode=False, data=_urlencode(params))
if result.get('body') == '' and result.get('text') == '':
return True
return result | module function_definition identifier parameters identifier block expression_statement assignment identifier call identifier argument_list identifier keyword_argument identifier string string_start string_content string_end expression_statement assignment identifier dictionary pair string string_start string_content string_end subscript identifier string string_start string_content string_end expression_statement assignment identifier call identifier argument_list string string_start string_content string_end keyword_argument identifier string string_start string_content string_end keyword_argument identifier false keyword_argument identifier call identifier argument_list identifier if_statement boolean_operator comparison_operator call attribute identifier identifier argument_list string string_start string_content string_end string string_start string_end comparison_operator call attribute identifier identifier argument_list string string_start string_content string_end string string_start string_end block return_statement true return_statement identifier | Remove a node from Vultr |
def handler(self):
printtime('Creating and populating objects', self.start)
self.populate()
printtime('Populating {} sequence profiles'.format(self.analysistype), self.start)
self.profiler()
self.annotatethreads()
self.cdsthreads()
self.cdssequencethreads()
self.allelematchthreads()
printtime('Determining {} sequence types'.format(self.analysistype), self.start)
self.sequencetyper()
printtime('Creating {} reports'.format(self.analysistype), self.start)
self.reporter() | module function_definition identifier parameters identifier block expression_statement call identifier argument_list string string_start string_content string_end attribute identifier identifier expression_statement call attribute identifier identifier argument_list expression_statement call identifier argument_list call attribute string string_start string_content string_end identifier argument_list attribute identifier identifier attribute identifier identifier expression_statement call attribute identifier identifier argument_list expression_statement call attribute identifier identifier argument_list expression_statement call attribute identifier identifier argument_list expression_statement call attribute identifier identifier argument_list expression_statement call attribute identifier identifier argument_list expression_statement call identifier argument_list call attribute string string_start string_content string_end identifier argument_list attribute identifier identifier attribute identifier identifier expression_statement call attribute identifier identifier argument_list expression_statement call identifier argument_list call attribute string string_start string_content string_end identifier argument_list attribute identifier identifier attribute identifier identifier expression_statement call attribute identifier identifier argument_list | Run the required analyses |
def apply_limit_to_sql(cls, sql, limit, database):
if cls.limit_method == LimitMethod.WRAP_SQL:
sql = sql.strip('\t\n ;')
qry = (
select('*')
.select_from(
TextAsFrom(text(sql), ['*']).alias('inner_qry'),
)
.limit(limit)
)
return database.compile_sqla_query(qry)
elif LimitMethod.FORCE_LIMIT:
parsed_query = sql_parse.ParsedQuery(sql)
sql = parsed_query.get_query_with_new_limit(limit)
return sql | module function_definition identifier parameters identifier identifier identifier identifier block if_statement comparison_operator attribute identifier identifier attribute identifier identifier block expression_statement assignment identifier call attribute identifier identifier argument_list string string_start string_content escape_sequence escape_sequence string_end expression_statement assignment identifier parenthesized_expression call attribute call attribute call identifier argument_list string string_start string_content string_end identifier argument_list call attribute call identifier argument_list call identifier argument_list identifier list string string_start string_content string_end identifier argument_list string string_start string_content string_end identifier argument_list identifier return_statement call attribute identifier identifier argument_list identifier elif_clause attribute identifier identifier block expression_statement assignment identifier call attribute identifier identifier argument_list identifier expression_statement assignment identifier call attribute identifier identifier argument_list identifier return_statement identifier | Alters the SQL statement to apply a LIMIT clause |
def isroutine(object):
return (isbuiltin(object)
or isfunction(object)
or ismethod(object)
or ismethoddescriptor(object)) | module function_definition identifier parameters identifier block return_statement parenthesized_expression boolean_operator boolean_operator boolean_operator call identifier argument_list identifier call identifier argument_list identifier call identifier argument_list identifier call identifier argument_list identifier | Return true if the object is any kind of function or method. |
def _display_stream(normalized_data, stream):
try:
stream.write(normalized_data['stream'])
except UnicodeEncodeError:
stream.write(normalized_data['stream'].encode("utf-8")) | module function_definition identifier parameters identifier identifier block try_statement block expression_statement call attribute identifier identifier argument_list subscript identifier string string_start string_content string_end except_clause identifier block expression_statement call attribute identifier identifier argument_list call attribute subscript identifier string string_start string_content string_end identifier argument_list string string_start string_content string_end | print stream message from docker-py stream. |
def mtf_bitransformer_tiny():
hparams = mtf_bitransformer_base()
hparams.batch_size = 2
hparams.mesh_shape = ""
hparams.d_model = 128
hparams.encoder_layers = ["self_att", "drd"] * 2
hparams.decoder_layers = ["self_att", "enc_att", "drd"] * 2
hparams.num_heads = 4
hparams.d_ff = 512
return hparams | module function_definition identifier parameters block expression_statement assignment identifier call identifier argument_list expression_statement assignment attribute identifier identifier integer expression_statement assignment attribute identifier identifier string string_start string_end expression_statement assignment attribute identifier identifier integer expression_statement assignment attribute identifier identifier binary_operator list string string_start string_content string_end string string_start string_content string_end integer expression_statement assignment attribute identifier identifier binary_operator list string string_start string_content string_end string string_start string_content string_end string string_start string_content string_end integer expression_statement assignment attribute identifier identifier integer expression_statement assignment attribute identifier identifier integer return_statement identifier | Small encoder-decoder model for testing. |
def orchestration(self):
if self._orchestration is not None:
return self._orchestration
API_VERSIONS = {
'1': 'heatclient.v1.client.Client',
}
heat_client = utils.get_client_class(
API_NAME,
self._instance._api_version[API_NAME],
API_VERSIONS)
LOG.debug('Instantiating orchestration client: %s', heat_client)
endpoint = self._instance.get_endpoint_for_service_type(
'orchestration')
token = self._instance.auth.get_token(self._instance.session)
client = heat_client(
endpoint=endpoint,
auth_url=self._instance._auth_url,
token=token,
username=self._instance._username,
password=self._instance._password,
region_name=self._instance._region_name,
insecure=self._instance._insecure,
ca_file=self._instance._cli_options.os_cacert,
)
self._orchestration = client
return self._orchestration | module function_definition identifier parameters identifier block if_statement comparison_operator attribute identifier identifier none block return_statement attribute identifier identifier expression_statement assignment identifier dictionary pair string string_start string_content string_end string string_start string_content string_end expression_statement assignment identifier call attribute identifier identifier argument_list identifier subscript attribute attribute identifier identifier identifier identifier identifier expression_statement call attribute identifier identifier argument_list string string_start string_content string_end identifier expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list string string_start string_content string_end expression_statement assignment identifier call attribute attribute attribute identifier identifier identifier identifier argument_list attribute attribute identifier identifier identifier expression_statement assignment identifier call identifier argument_list keyword_argument identifier identifier keyword_argument identifier attribute attribute identifier identifier identifier keyword_argument identifier identifier keyword_argument identifier attribute attribute identifier identifier identifier keyword_argument identifier attribute attribute identifier identifier identifier keyword_argument identifier attribute attribute identifier identifier identifier keyword_argument identifier attribute attribute identifier identifier identifier keyword_argument identifier attribute attribute attribute identifier identifier identifier identifier expression_statement assignment attribute identifier identifier identifier return_statement attribute identifier identifier | Returns an orchestration service client |
def assert_looks_like(first, second, msg=None):
first = _re.sub("\s+", " ", first.strip())
second = _re.sub("\s+", " ", second.strip())
if first != second:
raise AssertionError(msg or "%r does not look like %r" % (first, second)) | module function_definition identifier parameters identifier identifier default_parameter identifier none block expression_statement assignment identifier call attribute identifier identifier argument_list string string_start string_content string_end string string_start string_content string_end call attribute identifier identifier argument_list expression_statement assignment identifier call attribute identifier identifier argument_list string string_start string_content string_end string string_start string_content string_end call attribute identifier identifier argument_list if_statement comparison_operator identifier identifier block raise_statement call identifier argument_list boolean_operator identifier binary_operator string string_start string_content string_end tuple identifier identifier | Compare two strings if all contiguous whitespace is coalesced. |
def _get_cache_filename(name, filename):
filename = os.path.abspath(filename)[1:]
home_folder = os.path.expanduser('~')
base_cache_dir = os.path.join(home_folder, '.git-lint', 'cache')
return os.path.join(base_cache_dir, name, filename) | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier subscript call attribute attribute identifier identifier identifier argument_list identifier slice integer expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list string string_start string_content string_end expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list identifier string string_start string_content string_end string string_start string_content string_end return_statement call attribute attribute identifier identifier identifier argument_list identifier identifier identifier | Returns the cache location for filename and linter name. |
def _encode_json(obj):
def _dump_obj(obj):
if isinstance(obj, dict):
return obj
d = dict()
for k in dir(obj):
if not k.startswith('_'):
d[k] = getattr(obj, k)
return d
return json.dumps(obj, default=_dump_obj) | module function_definition identifier parameters identifier block function_definition identifier parameters identifier block if_statement call identifier argument_list identifier identifier block return_statement identifier expression_statement assignment identifier call identifier argument_list for_statement identifier call identifier argument_list identifier block if_statement not_operator call attribute identifier identifier argument_list string string_start string_content string_end block expression_statement assignment subscript identifier identifier call identifier argument_list identifier identifier return_statement identifier return_statement call attribute identifier identifier argument_list identifier keyword_argument identifier identifier | Encode object as json str. |
def product(sequence, initial=1):
if not isinstance(sequence, collections.Iterable):
raise TypeError("'{}' object is not iterable".format(type(sequence).__name__))
return reduce(operator.mul, sequence, initial) | module function_definition identifier parameters identifier default_parameter identifier integer block if_statement not_operator call identifier argument_list identifier attribute identifier identifier block raise_statement call identifier argument_list call attribute string string_start string_content string_end identifier argument_list attribute call identifier argument_list identifier identifier return_statement call identifier argument_list attribute identifier identifier identifier identifier | like the built-in sum, but for multiplication. |
def append_waiting_queue(self, transfer_coordinator):
logger.debug("Add to waiting queue count=%d" % self.waiting_coordinator_count())
with self._lockw:
self._waiting_transfer_coordinators.append(transfer_coordinator) | module function_definition identifier parameters identifier identifier block expression_statement call attribute identifier identifier argument_list binary_operator string string_start string_content string_end call attribute identifier identifier argument_list with_statement with_clause with_item attribute identifier identifier block expression_statement call attribute attribute identifier identifier identifier argument_list identifier | append item to waiting queue |
def list_hooks(self, key_name):
kf = self.dct[key_name]
if 'hooks' not in kf:
return []
else:
return kf['hooks'].iterkeys() | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier subscript attribute identifier identifier identifier if_statement comparison_operator string string_start string_content string_end identifier block return_statement list else_clause block return_statement call attribute subscript identifier string string_start string_content string_end identifier argument_list | Return list of all hooks attached to key_name. |
def center_of_mass(self):
center = np.zeros(3)
total_weight = 0
for site in self:
wt = site.species.weight
center += site.coords * wt
total_weight += wt
return center / total_weight | module function_definition identifier parameters identifier block expression_statement assignment identifier call attribute identifier identifier argument_list integer expression_statement assignment identifier integer for_statement identifier identifier block expression_statement assignment identifier attribute attribute identifier identifier identifier expression_statement augmented_assignment identifier binary_operator attribute identifier identifier identifier expression_statement augmented_assignment identifier identifier return_statement binary_operator identifier identifier | Center of mass of molecule. |
def rst_add_mathjax(content):
_, ext = os.path.splitext(os.path.basename(content.source_path))
if ext != '.rst':
return
if 'class="math"' in content._content:
content._content += "<script type='text/javascript'>%s</script>" % rst_add_mathjax.mathjax_script | module function_definition identifier parameters identifier block expression_statement assignment pattern_list identifier identifier call attribute attribute identifier identifier identifier argument_list call attribute attribute identifier identifier identifier argument_list attribute identifier identifier if_statement comparison_operator identifier string string_start string_content string_end block return_statement if_statement comparison_operator string string_start string_content string_end attribute identifier identifier block expression_statement augmented_assignment attribute identifier identifier binary_operator string string_start string_content string_end attribute identifier identifier | Adds mathjax script for reStructuredText |
def _delay(self):
if not self.next_scheduled:
self.next_scheduled = self.clock_func() + self.interval
return
while True:
current = self.clock_func()
if current >= self.next_scheduled:
extratime = current - self.next_scheduled
self.next_scheduled = current + self.interval - extratime
return
delay_amt = self.next_scheduled - current
if self.allow_negative_sleep or delay_amt >= 0:
self.sleep_func(self.next_scheduled - current) | module function_definition identifier parameters identifier block if_statement not_operator attribute identifier identifier block expression_statement assignment attribute identifier identifier binary_operator call attribute identifier identifier argument_list attribute identifier identifier return_statement while_statement true block expression_statement assignment identifier call attribute identifier identifier argument_list if_statement comparison_operator identifier attribute identifier identifier block expression_statement assignment identifier binary_operator identifier attribute identifier identifier expression_statement assignment attribute identifier identifier binary_operator binary_operator identifier attribute identifier identifier identifier return_statement expression_statement assignment identifier binary_operator attribute identifier identifier identifier if_statement boolean_operator attribute identifier identifier comparison_operator identifier integer block expression_statement call attribute identifier identifier argument_list binary_operator attribute identifier identifier identifier | Delay for between zero and self.interval time units |
def initialize_dendrites(self):
self.dendrites = SM32()
self.dendrites.reshape(self.dim, self.num_dendrites)
for row in range(self.num_dendrites):
synapses = numpy.random.choice(self.dim, self.dendrite_length, replace = False)
for synapse in synapses:
self.dendrites[synapse, row] = 1 | module function_definition identifier parameters identifier block expression_statement assignment attribute identifier identifier call identifier argument_list expression_statement call attribute attribute identifier identifier identifier argument_list attribute identifier identifier attribute identifier identifier for_statement identifier call identifier argument_list attribute identifier identifier block expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list attribute identifier identifier attribute identifier identifier keyword_argument identifier false for_statement identifier identifier block expression_statement assignment subscript attribute identifier identifier identifier identifier integer | Initialize all the dendrites of the neuron to a set of random connections |
def missing_nodes(self):
missing = set()
for target_addr, target_attrs in self.graph.node.items():
if 'target_obj' not in target_attrs:
missing.add(target_addr)
return missing | module function_definition identifier parameters identifier block expression_statement assignment identifier call identifier argument_list for_statement pattern_list identifier identifier call attribute attribute attribute identifier identifier identifier identifier argument_list block if_statement comparison_operator string string_start string_content string_end identifier block expression_statement call attribute identifier identifier argument_list identifier return_statement identifier | The set of targets known as dependencies but not yet defined. |
def randomize(length=6, choices=None):
if type(choices) == str:
choices = list(choices)
choices = choices or ascii_lowercase
return "".join(choice(choices) for _ in range(length)) | module function_definition identifier parameters default_parameter identifier integer default_parameter identifier none block if_statement comparison_operator call identifier argument_list identifier identifier block expression_statement assignment identifier call identifier argument_list identifier expression_statement assignment identifier boolean_operator identifier identifier return_statement call attribute string string_start string_end identifier generator_expression call identifier argument_list identifier for_in_clause identifier call identifier argument_list identifier | Returns a random string of the given length. |
def readSB(self, bits):
shift = 32 - bits
return int32(self.readbits(bits) << shift) >> shift | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier binary_operator integer identifier return_statement binary_operator call identifier argument_list binary_operator call attribute identifier identifier argument_list identifier identifier identifier | Read a signed int using the specified number of bits |
def _run_progress_callbacks(self, bytes_transferred):
if bytes_transferred:
for callback in self._progress_callbacks:
try:
callback(bytes_transferred=bytes_transferred)
except Exception as ex:
logger.error("Exception: %s" % str(ex)) | module function_definition identifier parameters identifier identifier block if_statement identifier block for_statement identifier attribute identifier identifier block try_statement block expression_statement call identifier argument_list keyword_argument identifier identifier except_clause as_pattern identifier as_pattern_target identifier block expression_statement call attribute identifier identifier argument_list binary_operator string string_start string_content string_end call identifier argument_list identifier | pass the number of bytes process to progress callbacks |
def timer():
if sys.platform == "win32":
default_timer = time.clock
else:
default_timer = time.time
return default_timer() | module function_definition identifier parameters block if_statement comparison_operator attribute identifier identifier string string_start string_content string_end block expression_statement assignment identifier attribute identifier identifier else_clause block expression_statement assignment identifier attribute identifier identifier return_statement call identifier argument_list | Timer used for calculate time elapsed |
def exception_handle(method):
def wrapper(*args, **kwargs):
try:
result = method(*args, **kwargs)
return result
except ProxyError:
LOG.exception('ProxyError when try to get %s.', args)
raise ProxyError('A proxy error occurred.')
except ConnectionException:
LOG.exception('ConnectionError when try to get %s.', args)
raise ConnectionException('DNS failure, refused connection, etc.')
except Timeout:
LOG.exception('Timeout when try to get %s', args)
raise Timeout('The request timed out.')
except RequestException:
LOG.exception('RequestException when try to get %s.', args)
raise RequestException('Please check out your network.')
return wrapper | module function_definition identifier parameters identifier block function_definition identifier parameters list_splat_pattern identifier dictionary_splat_pattern identifier block try_statement block expression_statement assignment identifier call identifier argument_list list_splat identifier dictionary_splat identifier return_statement identifier except_clause identifier block expression_statement call attribute identifier identifier argument_list string string_start string_content string_end identifier raise_statement call identifier argument_list string string_start string_content string_end except_clause identifier block expression_statement call attribute identifier identifier argument_list string string_start string_content string_end identifier raise_statement call identifier argument_list string string_start string_content string_end except_clause identifier block expression_statement call attribute identifier identifier argument_list string string_start string_content string_end identifier raise_statement call identifier argument_list string string_start string_content string_end except_clause identifier block expression_statement call attribute identifier identifier argument_list string string_start string_content string_end identifier raise_statement call identifier argument_list string string_start string_content string_end return_statement identifier | Handle exception raised by requests library. |
def _bp(editor, force=False):
eb = editor.window_arrangement.active_editor_buffer
if not force and eb.has_unsaved_changes:
editor.show_message(_NO_WRITE_SINCE_LAST_CHANGE_TEXT)
else:
editor.window_arrangement.go_to_previous_buffer() | module function_definition identifier parameters identifier default_parameter identifier false block expression_statement assignment identifier attribute attribute identifier identifier identifier if_statement boolean_operator not_operator identifier attribute identifier identifier block expression_statement call attribute identifier identifier argument_list identifier else_clause block expression_statement call attribute attribute identifier identifier identifier argument_list | Go to previous buffer. |
def _get_feed_data(self, file_paths):
rv = {}
for i in file_paths:
_ = i.split('/')
category = _[-2]
name = _[-1].split('.')[0]
page_config, md = self._get_config_and_content(i)
parsed_md = tools.parse_markdown(md, self.site_config)
rv.setdefault(category, {})
rv[category].update(
{
i: {
'title': page_config.get('title', ''),
'name': name.decode('utf-8'),
'content': parsed_md,
'date': page_config.get('date', '')
}
}
)
return rv | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier dictionary for_statement identifier identifier block expression_statement assignment identifier call attribute identifier identifier argument_list string string_start string_content string_end expression_statement assignment identifier subscript identifier unary_operator integer expression_statement assignment identifier subscript call attribute subscript identifier unary_operator integer identifier argument_list string string_start string_content string_end integer expression_statement assignment pattern_list identifier identifier call attribute identifier identifier argument_list identifier expression_statement assignment identifier call attribute identifier identifier argument_list identifier attribute identifier identifier expression_statement call attribute identifier identifier argument_list identifier dictionary expression_statement call attribute subscript identifier identifier identifier argument_list dictionary pair identifier dictionary pair string string_start string_content string_end call attribute identifier identifier argument_list string string_start string_content string_end string string_start string_end pair string string_start string_content string_end call attribute identifier identifier argument_list string string_start string_content string_end pair string string_start string_content string_end identifier pair string string_start string_content string_end call attribute identifier identifier argument_list string string_start string_content string_end string string_start string_end return_statement identifier | get data to display in feed file |
def _get_name(self):
if self.name is not None:
return self.name
if self.scoring_ is None:
return 'score'
if isinstance(self.scoring_, str):
return self.scoring_
if isinstance(self.scoring_, partial):
return self.scoring_.func.__name__
if isinstance(self.scoring_, _BaseScorer):
return self.scoring_._score_func.__name__
return self.scoring_.__name__ | module function_definition identifier parameters identifier block if_statement comparison_operator attribute identifier identifier none block return_statement attribute identifier identifier if_statement comparison_operator attribute identifier identifier none block return_statement string string_start string_content string_end if_statement call identifier argument_list attribute identifier identifier identifier block return_statement attribute identifier identifier if_statement call identifier argument_list attribute identifier identifier identifier block return_statement attribute attribute attribute identifier identifier identifier identifier if_statement call identifier argument_list attribute identifier identifier identifier block return_statement attribute attribute attribute identifier identifier identifier identifier return_statement attribute attribute identifier identifier identifier | Find name of scoring function. |
def python(code, show=True):
setup = "import os;" \
"os.environ[\'DJANGO_SETTINGS_MODULE\']=\'%s.settings\';" \
"import django;" \
"django.setup();" % env.proj_app
full_code = 'python -c "%s%s"' % (setup, code.replace("`", "\\\`"))
with project():
if show:
print_command(code)
result = run(full_code, show=False)
return result | module function_definition identifier parameters identifier default_parameter identifier true block expression_statement assignment identifier binary_operator concatenated_string string string_start string_content string_end string string_start string_content escape_sequence escape_sequence escape_sequence escape_sequence string_end string string_start string_content string_end string string_start string_content string_end attribute identifier identifier expression_statement assignment identifier binary_operator string string_start string_content string_end tuple identifier call attribute identifier identifier argument_list string string_start string_content string_end string string_start string_content escape_sequence string_end with_statement with_clause with_item call identifier argument_list block if_statement identifier block expression_statement call identifier argument_list identifier expression_statement assignment identifier call identifier argument_list identifier keyword_argument identifier false return_statement identifier | Runs Python code in the project's virtual environment, with Django loaded. |
def _find_by_chain(self, browser, criteria, tag, constraints):
return self._filter_elements(
browser.find_elements_by_ios_class_chain(criteria),
tag, constraints) | module function_definition identifier parameters identifier identifier identifier identifier identifier block return_statement call attribute identifier identifier argument_list call attribute identifier identifier argument_list identifier identifier identifier | Find element matches by iOSChainString. |
def reboot(self, devices):
for device in devices:
self.logger.info('Rebooting: %s', device.id)
try:
device.reboot()
except packet.baseapi.Error:
raise PacketManagerException('Unable to reboot instance "{}"'.format(device.id)) | module function_definition identifier parameters identifier identifier block for_statement identifier identifier block expression_statement call attribute attribute identifier identifier identifier argument_list string string_start string_content string_end attribute identifier identifier try_statement block expression_statement call attribute identifier identifier argument_list except_clause attribute attribute identifier identifier identifier block raise_statement call identifier argument_list call attribute string string_start string_content string_end identifier argument_list attribute identifier identifier | Reboot one or more devices. |
def ivorn_present(session, ivorn):
return bool(
session.query(Voevent.id).filter(Voevent.ivorn == ivorn).count()) | module function_definition identifier parameters identifier identifier block return_statement call identifier argument_list call attribute call attribute call attribute identifier identifier argument_list attribute identifier identifier identifier argument_list comparison_operator attribute identifier identifier identifier identifier argument_list | Predicate, returns whether the IVORN is in the database. |
def _required_attribute(element, name, default):
if element.get(name) is None:
element.set(name, default) | module function_definition identifier parameters identifier identifier identifier block if_statement comparison_operator call attribute identifier identifier argument_list identifier none block expression_statement call attribute identifier identifier argument_list identifier identifier | Add attribute with default value to element if it doesn't already exist. |
def _main_loop(self):
self.logger.debug("Running main loop")
old_time = 0
while True:
for plugin_key in self.plugins_dict:
obj = self.plugins_dict[plugin_key]
self._process_plugin(obj)
if self.settings['STATS_DUMP'] != 0:
new_time = int(old_div(time.time(), self.settings['STATS_DUMP']))
if new_time != old_time:
self._dump_stats()
if self.settings['STATS_DUMP_CRAWL']:
self._dump_crawl_stats()
if self.settings['STATS_DUMP_QUEUE']:
self._dump_queue_stats()
old_time = new_time
self._report_self()
time.sleep(self.settings['SLEEP_TIME']) | module function_definition identifier parameters identifier block expression_statement call attribute attribute identifier identifier identifier argument_list string string_start string_content string_end expression_statement assignment identifier integer while_statement true block for_statement identifier attribute identifier identifier block expression_statement assignment identifier subscript attribute identifier identifier identifier expression_statement call attribute identifier identifier argument_list identifier if_statement comparison_operator subscript attribute identifier identifier string string_start string_content string_end integer block expression_statement assignment identifier call identifier argument_list call identifier argument_list call attribute identifier identifier argument_list subscript attribute identifier identifier string string_start string_content string_end if_statement comparison_operator identifier identifier block expression_statement call attribute identifier identifier argument_list if_statement subscript attribute identifier identifier string string_start string_content string_end block expression_statement call attribute identifier identifier argument_list if_statement subscript attribute identifier identifier string string_start string_content string_end block expression_statement call attribute identifier identifier argument_list expression_statement assignment identifier identifier expression_statement call attribute identifier identifier argument_list expression_statement call attribute identifier identifier argument_list subscript attribute identifier identifier string string_start string_content string_end | The internal while true main loop for the redis monitor |
def _flip_sign_row(self, i):
L = np.eye(3, dtype='intc')
L[i, i] = -1
self._L.append(L.copy())
self._A = np.dot(L, self._A) | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier call attribute identifier identifier argument_list integer keyword_argument identifier string string_start string_content string_end expression_statement assignment subscript identifier identifier identifier unary_operator integer expression_statement call attribute attribute identifier identifier identifier argument_list call attribute identifier identifier argument_list expression_statement assignment attribute identifier identifier call attribute identifier identifier argument_list identifier attribute identifier identifier | Multiply -1 for all elements in row |
def __add_shared(self, original_token):
sid = self.__new_sid()
token = SymbolToken(original_token.text, sid, self.__import_location(sid))
self.__add(token)
return token | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier call attribute identifier identifier argument_list expression_statement assignment identifier call identifier argument_list attribute identifier identifier identifier call attribute identifier identifier argument_list identifier expression_statement call attribute identifier identifier argument_list identifier return_statement identifier | Adds a token, normalizing the SID and import reference to this table. |
def __html_rep(self, game_key, rep_code):
seas, gt, num = game_key.to_tuple()
url = [ self.__domain, "scores/htmlreports/", str(seas-1), str(seas),
"/", rep_code, "0", str(gt), ("%04i" % (num)), ".HTM" ]
url = ''.join(url)
return self.__open(url) | module function_definition identifier parameters identifier identifier identifier block expression_statement assignment pattern_list identifier identifier identifier call attribute identifier identifier argument_list expression_statement assignment identifier list attribute identifier identifier string string_start string_content string_end call identifier argument_list binary_operator identifier integer call identifier argument_list identifier string string_start string_content string_end identifier string string_start string_content string_end call identifier argument_list identifier parenthesized_expression binary_operator string string_start string_content string_end parenthesized_expression identifier string string_start string_content string_end expression_statement assignment identifier call attribute string string_start string_end identifier argument_list identifier return_statement call attribute identifier identifier argument_list identifier | Retrieves the nhl html reports for the specified game and report code |
def local_not_complete(self):
if self.process and self.process.poll() is None:
self._timeout_check()
return True
return False | module function_definition identifier parameters identifier block if_statement boolean_operator attribute identifier identifier comparison_operator call attribute attribute identifier identifier identifier argument_list none block expression_statement call attribute identifier identifier argument_list return_statement true return_statement false | Returns True if task is local and not completed |
def interlink_static_files(generator):
if generator.settings['STATIC_PATHS'] != []:
return
try:
static_content = generator.context['static_content']
except KeyError:
static_content = generator.context['filenames']
relpath = relpath_to_site(generator.settings['DEFAULT_LANG'], _MAIN_LANG)
for staticfile in _MAIN_STATIC_FILES:
if staticfile.get_relative_source_path() not in static_content:
staticfile = copy(staticfile)
staticfile.override_url = posixpath.join(relpath, staticfile.url)
try:
generator.add_source_path(staticfile, static=True)
except TypeError:
generator.add_source_path(staticfile) | module function_definition identifier parameters identifier block if_statement comparison_operator subscript attribute identifier identifier string string_start string_content string_end list block return_statement try_statement block expression_statement assignment identifier subscript attribute identifier identifier string string_start string_content string_end except_clause identifier block expression_statement assignment identifier subscript attribute identifier identifier string string_start string_content string_end expression_statement assignment identifier call identifier argument_list subscript attribute identifier identifier string string_start string_content string_end identifier for_statement identifier identifier block if_statement comparison_operator call attribute identifier identifier argument_list identifier block expression_statement assignment identifier call identifier argument_list identifier expression_statement assignment attribute identifier identifier call attribute identifier identifier argument_list identifier attribute identifier identifier try_statement block expression_statement call attribute identifier identifier argument_list identifier keyword_argument identifier true except_clause identifier block expression_statement call attribute identifier identifier argument_list identifier | Add links to static files in the main site if necessary |
def export(self, name, columns, points):
logger.debug("Export {} stats to ZeroMQ".format(name))
data = dict(zip(columns, points))
if data == {}:
return False
message = [b(self.prefix),
b(name),
asbytes(json.dumps(data))]
try:
self.client.send_multipart(message)
except Exception as e:
logger.error("Cannot export {} stats to ZeroMQ ({})".format(name, e))
return True | module function_definition identifier parameters identifier identifier identifier identifier block expression_statement call attribute identifier identifier argument_list call attribute string string_start string_content string_end identifier argument_list identifier expression_statement assignment identifier call identifier argument_list call identifier argument_list identifier identifier if_statement comparison_operator identifier dictionary block return_statement false expression_statement assignment identifier list call identifier argument_list attribute identifier identifier call identifier argument_list identifier call identifier argument_list call attribute identifier identifier argument_list identifier try_statement block expression_statement call attribute attribute identifier identifier identifier argument_list identifier except_clause as_pattern identifier as_pattern_target identifier block expression_statement call attribute identifier identifier argument_list call attribute string string_start string_content string_end identifier argument_list identifier identifier return_statement true | Write the points to the ZeroMQ server. |
def route(self, path):
logging.getLogger(__name__).debug("Routing path '%s'.", path)
cls = None
for strategy in self._strategies:
if strategy.can_route(path):
cls = strategy.route(path)
break
if cls is None:
raise RoutingError(path)
return self._create_result(cls) | module function_definition identifier parameters identifier identifier block expression_statement call attribute call attribute identifier identifier argument_list identifier identifier argument_list string string_start string_content string_end identifier expression_statement assignment identifier none for_statement identifier attribute identifier identifier block if_statement call attribute identifier identifier argument_list identifier block expression_statement assignment identifier call attribute identifier identifier argument_list identifier break_statement if_statement comparison_operator identifier none block raise_statement call identifier argument_list identifier return_statement call attribute identifier identifier argument_list identifier | Returns the task handling the given request path. |
def _get_intra_event_std(self, C, mag, sa1180, vs30, vs30measured,
rrup):
phi_al = self._get_phi_al_regional(C, mag, vs30measured, rrup)
derAmp = self._get_derivative(C, sa1180, vs30)
phi_amp = 0.4
idx = phi_al < phi_amp
if np.any(idx):
phi_amp = 0.4 * np.ones_like(phi_al)
phi_amp[idx] = 0.99 * phi_al[idx]
phi_b = np.sqrt(phi_al**2 - phi_amp**2)
phi = np.sqrt(phi_b**2 * (1 + derAmp)**2 + phi_amp**2)
return phi | module function_definition identifier parameters identifier identifier identifier identifier identifier identifier identifier block expression_statement assignment identifier call attribute identifier identifier argument_list identifier identifier identifier identifier expression_statement assignment identifier call attribute identifier identifier argument_list identifier identifier identifier expression_statement assignment identifier float expression_statement assignment identifier comparison_operator identifier identifier if_statement call attribute identifier identifier argument_list identifier block expression_statement assignment identifier binary_operator float call attribute identifier identifier argument_list identifier expression_statement assignment subscript identifier identifier binary_operator float subscript identifier identifier expression_statement assignment identifier call attribute identifier identifier argument_list binary_operator binary_operator identifier integer binary_operator identifier integer expression_statement assignment identifier call attribute identifier identifier argument_list binary_operator binary_operator binary_operator identifier integer binary_operator parenthesized_expression binary_operator integer identifier integer binary_operator identifier integer return_statement identifier | Returns Phi as described at pages 1046 and 1047 |
def import_model(cls, ins_name):
try:
package_space = getattr(cls, 'package_space')
except AttributeError:
raise ValueError('package_space not exist')
else:
return import_object(ins_name, package_space) | module function_definition identifier parameters identifier identifier block try_statement block expression_statement assignment identifier call identifier argument_list identifier string string_start string_content string_end except_clause identifier block raise_statement call identifier argument_list string string_start string_content string_end else_clause block return_statement call identifier argument_list identifier identifier | Import model class in models package |
def type(self):
if self is FeatureType.TIMESTAMP:
return list
if self is FeatureType.BBOX:
return BBox
return dict | module function_definition identifier parameters identifier block if_statement comparison_operator identifier attribute identifier identifier block return_statement identifier if_statement comparison_operator identifier attribute identifier identifier block return_statement identifier return_statement identifier | Returns type of the data for the given FeatureType. |
def main(client_id, client_secret, scopes):
client_config = ClientConfigBuilder(
client_type=ClientConfigBuilder.CLIENT_TYPE_WEB, client_id=client_id,
client_secret=client_secret)
flow = InstalledAppFlow.from_client_config(
client_config.Build(), scopes=scopes)
flow.redirect_uri = _REDIRECT_URI
auth_url, _ = flow.authorization_url(prompt='consent')
print ('Log into the Google Account you use to access your Ad Manager account'
'and go to the following URL: \n%s\n' % (auth_url))
print 'After approving the token enter the verification code (if specified).'
code = raw_input('Code: ').strip()
try:
flow.fetch_token(code=code)
except InvalidGrantError as ex:
print 'Authentication has failed: %s' % ex
sys.exit(1)
print 'Access token: %s' % flow.credentials.token
print 'Refresh token: %s' % flow.credentials.refresh_token | module function_definition identifier parameters identifier identifier identifier block expression_statement assignment identifier call identifier argument_list keyword_argument identifier attribute identifier identifier keyword_argument identifier identifier keyword_argument identifier identifier expression_statement assignment identifier call attribute identifier identifier argument_list call attribute identifier identifier argument_list keyword_argument identifier identifier expression_statement assignment attribute identifier identifier identifier expression_statement assignment pattern_list identifier identifier call attribute identifier identifier argument_list keyword_argument identifier string string_start string_content string_end expression_statement call identifier argument_list binary_operator concatenated_string string string_start string_content string_end string string_start string_content escape_sequence escape_sequence string_end parenthesized_expression identifier print_statement string string_start string_content string_end expression_statement assignment identifier call attribute call identifier argument_list string string_start string_content string_end identifier argument_list try_statement block expression_statement call attribute identifier identifier argument_list keyword_argument identifier identifier except_clause as_pattern identifier as_pattern_target identifier block print_statement binary_operator string string_start string_content string_end identifier expression_statement call attribute identifier identifier argument_list integer print_statement binary_operator string string_start string_content string_end attribute attribute identifier identifier identifier print_statement binary_operator string string_start string_content string_end attribute attribute identifier identifier identifier | Retrieve and display the access and refresh token. |
def calibrate_data(params, raw_data, calib_data):
start = calib_data.before(datetime.max)
if start is None:
start = datetime.min
start = raw_data.after(start + SECOND)
if start is None:
return start
del calib_data[start:]
calibrator = Calib(params, raw_data)
def calibgen(inputdata):
count = 0
for data in inputdata:
idx = data['idx']
count += 1
if count % 10000 == 0:
logger.info("calib: %s", idx.isoformat(' '))
elif count % 500 == 0:
logger.debug("calib: %s", idx.isoformat(' '))
for key in ('rain', 'abs_pressure', 'temp_in'):
if data[key] is None:
logger.error('Ignoring invalid data at %s', idx.isoformat(' '))
break
else:
yield calibrator.calib(data)
calib_data.update(calibgen(raw_data[start:]))
return start | module function_definition identifier parameters identifier identifier identifier block expression_statement assignment identifier call attribute identifier identifier argument_list attribute identifier identifier if_statement comparison_operator identifier none block expression_statement assignment identifier attribute identifier identifier expression_statement assignment identifier call attribute identifier identifier argument_list binary_operator identifier identifier if_statement comparison_operator identifier none block return_statement identifier delete_statement subscript identifier slice identifier expression_statement assignment identifier call identifier argument_list identifier identifier function_definition identifier parameters identifier block expression_statement assignment identifier integer for_statement identifier identifier block expression_statement assignment identifier subscript identifier string string_start string_content string_end expression_statement augmented_assignment identifier integer if_statement comparison_operator binary_operator identifier integer integer block expression_statement call attribute identifier identifier argument_list string string_start string_content string_end call attribute identifier identifier argument_list string string_start string_content string_end elif_clause comparison_operator binary_operator identifier integer integer block expression_statement call attribute identifier identifier argument_list string string_start string_content string_end call attribute identifier identifier argument_list string string_start string_content string_end for_statement identifier tuple string string_start string_content string_end string string_start string_content string_end string string_start string_content string_end block if_statement comparison_operator subscript identifier identifier none block expression_statement call attribute identifier identifier argument_list string string_start string_content string_end call attribute identifier identifier argument_list string string_start string_content string_end break_statement else_clause block expression_statement yield call attribute identifier identifier argument_list identifier expression_statement call attribute identifier identifier argument_list call identifier argument_list subscript identifier slice identifier return_statement identifier | Calibrate' raw data, using a user-supplied function. |
def _get_error_message(self, model_class, method_name, action_method_name):
if action_method_name:
return "'{}' does not have '{}' or '{}' defined.".format(model_class, method_name, action_method_name)
else:
return "'{}' does not have '{}' defined.".format(model_class, method_name) | module function_definition identifier parameters identifier identifier identifier identifier block if_statement identifier block return_statement call attribute string string_start string_content string_end identifier argument_list identifier identifier identifier else_clause block return_statement call attribute string string_start string_content string_end identifier argument_list identifier identifier | Get assertion error message depending if there are actions permissions methods defined. |
def OnMacroToolbarToggle(self, event):
self.main_window.macro_toolbar.SetGripperVisible(True)
macro_toolbar_info = self.main_window._mgr.GetPane("macro_toolbar")
self._toggle_pane(macro_toolbar_info)
event.Skip() | module function_definition identifier parameters identifier identifier block expression_statement call attribute attribute attribute identifier identifier identifier identifier argument_list true expression_statement assignment identifier call attribute attribute attribute identifier identifier identifier identifier argument_list string string_start string_content string_end expression_statement call attribute identifier identifier argument_list identifier expression_statement call attribute identifier identifier argument_list | Macro toolbar toggle event handler |
def pseudo_partial_waves(self):
pseudo_partial_waves = OrderedDict()
for (mesh, values, attrib) in self._parse_all_radfuncs("pseudo_partial_wave"):
state = attrib["state"]
pseudo_partial_waves[state] = RadialFunction(mesh, values)
return pseudo_partial_waves | module function_definition identifier parameters identifier block expression_statement assignment identifier call identifier argument_list for_statement tuple_pattern identifier identifier identifier call attribute identifier identifier argument_list string string_start string_content string_end block expression_statement assignment identifier subscript identifier string string_start string_content string_end expression_statement assignment subscript identifier identifier call identifier argument_list identifier identifier return_statement identifier | Dictionary with the pseudo partial waves indexed by state. |
def compute(self, inputVector, learn, activeArray):
super(SpatialPoolerWrapper, self).compute(inputVector, learn, activeArray)
self._updateAvgActivityPairs(activeArray) | module function_definition identifier parameters identifier identifier identifier identifier block expression_statement call attribute call identifier argument_list identifier identifier identifier argument_list identifier identifier identifier expression_statement call attribute identifier identifier argument_list identifier | This method resembles the primary public method of the SpatialPooler class. |
def html(self) -> str:
if self._inner_element:
return self.start_tag + self._inner_element.html + self.end_tag
return super().html | module function_definition identifier parameters identifier type identifier block if_statement attribute identifier identifier block return_statement binary_operator binary_operator attribute identifier identifier attribute attribute identifier identifier identifier attribute identifier identifier return_statement attribute call identifier argument_list identifier | Get whole html representation of this node. |
def display_callback(self, cpu_cycles, op_address, address, value):
self.display.write_byte(cpu_cycles, op_address, address, value)
return value | module function_definition identifier parameters identifier identifier identifier identifier identifier block expression_statement call attribute attribute identifier identifier identifier argument_list identifier identifier identifier identifier return_statement identifier | called via memory write_byte_middleware |
def _CreateZMQSocket(self):
super(ZeroMQBufferedQueue, self)._CreateZMQSocket()
if not self._zmq_thread:
thread_name = '{0:s}_zmq_responder'.format(self.name)
self._zmq_thread = threading.Thread(
target=self._ZeroMQResponder, args=[self._queue], name=thread_name)
self._zmq_thread.start() | module function_definition identifier parameters identifier block expression_statement call attribute call identifier argument_list identifier identifier identifier argument_list if_statement not_operator attribute identifier identifier block expression_statement assignment identifier call attribute string string_start string_content string_end identifier argument_list attribute identifier identifier expression_statement assignment attribute identifier identifier call attribute identifier identifier argument_list keyword_argument identifier attribute identifier identifier keyword_argument identifier list attribute identifier identifier keyword_argument identifier identifier expression_statement call attribute attribute identifier identifier identifier argument_list | Creates a ZeroMQ socket as well as a regular queue and a thread. |
def guess_width(self):
if len(self.header) <= 4:
nspace = 6
elif len(self.header) <= 6:
nspace = 5
else:
nspace = 4
ncol = len(self.header)
self._width = [nspace] * ncol
width = [0] * ncol
for idx, item in enumerate(self.header):
width[idx] = len(str(item))
samples = min(len(self.data), 10)
for col in range(ncol):
for idx in range(samples):
data = self.data[idx][col]
if not isinstance(data, (float, int)):
temp = len(data)
else:
temp = 10
if temp > width[col]:
width[col] = temp
for col in range(ncol):
self._width[col] += width[col] | module function_definition identifier parameters identifier block if_statement comparison_operator call identifier argument_list attribute identifier identifier integer block expression_statement assignment identifier integer elif_clause comparison_operator call identifier argument_list attribute identifier identifier integer block expression_statement assignment identifier integer else_clause block expression_statement assignment identifier integer expression_statement assignment identifier call identifier argument_list attribute identifier identifier expression_statement assignment attribute identifier identifier binary_operator list identifier identifier expression_statement assignment identifier binary_operator list integer identifier for_statement pattern_list identifier identifier call identifier argument_list attribute identifier identifier block expression_statement assignment subscript identifier identifier call identifier argument_list call identifier argument_list identifier expression_statement assignment identifier call identifier argument_list call identifier argument_list attribute identifier identifier integer for_statement identifier call identifier argument_list identifier block for_statement identifier call identifier argument_list identifier block expression_statement assignment identifier subscript subscript attribute identifier identifier identifier identifier if_statement not_operator call identifier argument_list identifier tuple identifier identifier block expression_statement assignment identifier call identifier argument_list identifier else_clause block expression_statement assignment identifier integer if_statement comparison_operator identifier subscript identifier identifier block expression_statement assignment subscript identifier identifier identifier for_statement identifier call identifier argument_list identifier block expression_statement augmented_assignment subscript attribute identifier identifier identifier subscript identifier identifier | auto fit column width |
def _string_to_substitute(self, mo, methods_dict):
matched_text, f_name = mo.groups()
if f_name not in methods_dict:
return matched_text
a_tree = ast.parse(matched_text)
args_list = [self._get_value_from_ast(a) for a in a_tree.body[0].value.args]
kwargs_list = {
kw.arg: self._get_value_from_ast(kw.value)
for kw in a_tree.body[0].value.keywords
}
return methods_dict[f_name](*args_list, **kwargs_list) | module function_definition identifier parameters identifier identifier identifier block expression_statement assignment pattern_list identifier identifier call attribute identifier identifier argument_list if_statement comparison_operator identifier identifier block return_statement identifier expression_statement assignment identifier call attribute identifier identifier argument_list identifier expression_statement assignment identifier list_comprehension call attribute identifier identifier argument_list identifier for_in_clause identifier attribute attribute subscript attribute identifier identifier integer identifier identifier expression_statement assignment identifier dictionary_comprehension pair attribute identifier identifier call attribute identifier identifier argument_list attribute identifier identifier for_in_clause identifier attribute attribute subscript attribute identifier identifier integer identifier identifier return_statement call subscript identifier identifier argument_list list_splat identifier dictionary_splat identifier | Return the string to be substituted for the match. |
def reporter(self):
logging.info('Creating {} report'.format(self.analysistype))
make_path(self.reportpath)
header = 'Strain,ReferenceGenus,ReferenceFile,ReferenceGenomeMashDistance,Pvalue,NumMatchingHashes\n'
data = ''
for sample in self.metadata:
try:
data += '{},{},{},{},{},{}\n'.format(sample.name,
sample[self.analysistype].closestrefseqgenus,
sample[self.analysistype].closestrefseq,
sample[self.analysistype].mashdistance,
sample[self.analysistype].pvalue,
sample[self.analysistype].nummatches)
except AttributeError:
data += '{}\n'.format(sample.name)
reportfile = os.path.join(self.reportpath, 'mash.csv')
with open(reportfile, 'w') as report:
report.write(header)
report.write(data) | module function_definition identifier parameters identifier block expression_statement call attribute identifier identifier argument_list call attribute string string_start string_content string_end identifier argument_list attribute identifier identifier expression_statement call identifier argument_list attribute identifier identifier expression_statement assignment identifier string string_start string_content escape_sequence string_end expression_statement assignment identifier string string_start string_end for_statement identifier attribute identifier identifier block try_statement block expression_statement augmented_assignment identifier call attribute string string_start string_content escape_sequence string_end identifier argument_list attribute identifier identifier attribute subscript identifier attribute identifier identifier identifier attribute subscript identifier attribute identifier identifier identifier attribute subscript identifier attribute identifier identifier identifier attribute subscript identifier attribute identifier identifier identifier attribute subscript identifier attribute identifier identifier identifier except_clause identifier block expression_statement augmented_assignment identifier call attribute string string_start string_content escape_sequence string_end identifier argument_list attribute identifier identifier expression_statement assignment identifier call attribute attribute identifier identifier identifier argument_list attribute identifier identifier string string_start string_content string_end with_statement with_clause with_item as_pattern call identifier argument_list identifier string string_start string_content string_end as_pattern_target identifier block expression_statement call attribute identifier identifier argument_list identifier expression_statement call attribute identifier identifier argument_list identifier | Create the MASH report |
def _add_meta_info(self, eopatch, request_params, service_type):
for param, eoparam in zip(['time', 'time_difference', 'maxcc'], ['time_interval', 'time_difference', 'maxcc']):
if eoparam not in eopatch.meta_info:
eopatch.meta_info[eoparam] = request_params[param]
if 'service_type' not in eopatch.meta_info:
eopatch.meta_info['service_type'] = service_type.value
for param in ['size_x', 'size_y']:
if param not in eopatch.meta_info:
eopatch.meta_info[param] = getattr(self, param)
if eopatch.bbox is None:
eopatch.bbox = request_params['bbox'] | module function_definition identifier parameters identifier identifier identifier identifier block for_statement pattern_list identifier identifier call identifier argument_list list string string_start string_content string_end string string_start string_content string_end string string_start string_content string_end list string string_start string_content string_end string string_start string_content string_end string string_start string_content string_end block if_statement comparison_operator identifier attribute identifier identifier block expression_statement assignment subscript attribute identifier identifier identifier subscript identifier identifier if_statement comparison_operator string string_start string_content string_end attribute identifier identifier block expression_statement assignment subscript attribute identifier identifier string string_start string_content string_end attribute identifier identifier for_statement identifier list string string_start string_content string_end string string_start string_content string_end block if_statement comparison_operator identifier attribute identifier identifier block expression_statement assignment subscript attribute identifier identifier identifier call identifier argument_list identifier identifier if_statement comparison_operator attribute identifier identifier none block expression_statement assignment attribute identifier identifier subscript identifier string string_start string_content string_end | Adds any missing metadata info to EOPatch |
def human_size_to_bytes(human_size):
size_exp_map = {'K': 1, 'M': 2, 'G': 3, 'T': 4, 'P': 5}
human_size_str = six.text_type(human_size)
match = re.match(r'^(\d+)([KMGTP])?$', human_size_str)
if not match:
raise ValueError(
'Size must be all digits, with an optional unit type '
'(K, M, G, T, or P)'
)
size_num = int(match.group(1))
unit_multiplier = 1024 ** size_exp_map.get(match.group(2), 0)
return size_num * unit_multiplier | module function_definition identifier parameters identifier block expression_statement assignment identifier dictionary pair string string_start string_content string_end integer pair string string_start string_content string_end integer pair string string_start string_content string_end integer pair string string_start string_content string_end integer pair string string_start string_content string_end integer expression_statement assignment identifier call attribute identifier identifier argument_list identifier expression_statement assignment identifier call attribute identifier identifier argument_list string string_start string_content string_end identifier if_statement not_operator identifier block raise_statement call identifier argument_list concatenated_string string string_start string_content string_end string string_start string_content string_end expression_statement assignment identifier call identifier argument_list call attribute identifier identifier argument_list integer expression_statement assignment identifier binary_operator integer call attribute identifier identifier argument_list call attribute identifier identifier argument_list integer integer return_statement binary_operator identifier identifier | Convert human-readable units to bytes |
def _request(self, base_url, client_id, client_secret,
parameters, **kwargs):
logging.debug('Getting an OAuth token for client "%s" with scope "%s"',
client_id, parameters.get('scope'))
headers = {'Content-Type': 'application/x-www-form-urlencoded',
'Accept': 'application/json'}
api = API(base_url,
auth_username=client_id,
auth_password=client_secret,
**kwargs)
endpoint = api.auth.token
response = yield endpoint.post(body=urllib.urlencode(parameters),
request_timeout=60,
headers=headers)
logging.debug('Received token: %s', response.get('access_token'))
raise Return(response) | module function_definition identifier parameters identifier identifier identifier identifier identifier dictionary_splat_pattern identifier block expression_statement call attribute identifier identifier argument_list string string_start string_content string_end identifier call attribute identifier identifier argument_list string string_start string_content string_end expression_statement assignment identifier dictionary pair string string_start string_content string_end string string_start string_content string_end pair string string_start string_content string_end string string_start string_content string_end expression_statement assignment identifier call identifier argument_list identifier keyword_argument identifier identifier keyword_argument identifier identifier dictionary_splat identifier expression_statement assignment identifier attribute attribute identifier identifier identifier expression_statement assignment identifier yield call attribute identifier identifier argument_list keyword_argument identifier call attribute identifier identifier argument_list identifier keyword_argument identifier integer keyword_argument identifier identifier expression_statement call attribute identifier identifier argument_list string string_start string_content string_end call attribute identifier identifier argument_list string string_start string_content string_end raise_statement call identifier argument_list identifier | Make an API request to get the token |
def trace(self):
if len(self.errors) > 0:
numerrs = len(self.errors)
print("========= Trace (" + str(numerrs) + ") =========")
self._print_errs()
self.errors = [] | module function_definition identifier parameters identifier block if_statement comparison_operator call identifier argument_list attribute identifier identifier integer block expression_statement assignment identifier call identifier argument_list attribute identifier identifier expression_statement call identifier argument_list binary_operator binary_operator string string_start string_content string_end call identifier argument_list identifier string string_start string_content string_end expression_statement call attribute identifier identifier argument_list expression_statement assignment attribute identifier identifier list | Print the errors trace if there are some errors |
def value_at_coord(dset,coords):
return nl.numberize(nl.run(['3dmaskave','-q','-dbox'] + list(coords) + [dset],stderr=None).output) | module function_definition identifier parameters identifier identifier block return_statement call attribute identifier identifier argument_list attribute call attribute identifier identifier argument_list binary_operator binary_operator list string string_start string_content string_end string string_start string_content string_end string string_start string_content string_end call identifier argument_list identifier list identifier keyword_argument identifier none identifier | returns value at specified coordinate in ``dset`` |
def _glyph_for_monomer_pattern(self, pattern):
pattern.matches_key = lambda: str(pattern)
agent_id = self._make_agent_id(pattern)
if pattern.monomer.name in ('__source', '__sink'):
return None
glyph = emaker.glyph(emaker.label(text=pattern.monomer.name),
emaker.bbox(**self.monomer_style),
class_('macromolecule'), id=agent_id)
for site, value in pattern.site_conditions.items():
if value is None or isinstance(value, int):
continue
if site == 'phospho':
site = 'p'
elif site == 'activity':
site = 'act'
if value == 'active':
value = 'a'
elif value == 'inactive':
value = 'i'
state = emaker.state(variable=site, value=value)
state_glyph = \
emaker.glyph(state, emaker.bbox(**self.entity_state_style),
class_('state variable'), id=self._make_id())
glyph.append(state_glyph)
return glyph | module function_definition identifier parameters identifier identifier block expression_statement assignment attribute identifier identifier lambda call identifier argument_list identifier expression_statement assignment identifier call attribute identifier identifier argument_list identifier if_statement comparison_operator attribute attribute identifier identifier identifier tuple string string_start string_content string_end string string_start string_content string_end block return_statement none expression_statement assignment identifier call attribute identifier identifier argument_list call attribute identifier identifier argument_list keyword_argument identifier attribute attribute identifier identifier identifier call attribute identifier identifier argument_list dictionary_splat attribute identifier identifier call identifier argument_list string string_start string_content string_end keyword_argument identifier identifier for_statement pattern_list identifier identifier call attribute attribute identifier identifier identifier argument_list block if_statement boolean_operator comparison_operator identifier none call identifier argument_list identifier identifier block continue_statement if_statement comparison_operator identifier string string_start string_content string_end block expression_statement assignment identifier string string_start string_content string_end elif_clause comparison_operator identifier string string_start string_content string_end block expression_statement assignment identifier string string_start string_content string_end if_statement comparison_operator identifier string string_start string_content string_end block expression_statement assignment identifier string string_start string_content string_end elif_clause comparison_operator identifier string string_start string_content string_end block expression_statement assignment identifier string string_start string_content string_end expression_statement assignment identifier call attribute identifier identifier argument_list keyword_argument identifier identifier keyword_argument identifier identifier expression_statement assignment identifier line_continuation call attribute identifier identifier argument_list identifier call attribute identifier identifier argument_list dictionary_splat attribute identifier identifier call identifier argument_list string string_start string_content string_end keyword_argument identifier call attribute identifier identifier argument_list expression_statement call attribute identifier identifier argument_list identifier return_statement identifier | Add glyph for a PySB MonomerPattern. |
def startAll(self):
self.logger.info("Starting all workers...")
for worker in self.getWorkers():
process = self.getWorker(worker)
self.logger.debug("Starting {0}".format(process.name))
process.start()
self.logger.info("Started all workers") | module function_definition identifier parameters identifier block expression_statement call attribute attribute identifier identifier identifier argument_list string string_start string_content string_end for_statement identifier call attribute identifier identifier argument_list block expression_statement assignment identifier call attribute identifier identifier argument_list identifier expression_statement call attribute attribute identifier identifier identifier argument_list call attribute string string_start string_content string_end identifier argument_list attribute identifier identifier expression_statement call attribute identifier identifier argument_list expression_statement call attribute attribute identifier identifier identifier argument_list string string_start string_content string_end | Start all registered Workers. |
def terminal_size():
try:
(rows, columns) = os.popen('stty size', 'r').read().split()
rows = int(rows)
columns = int(columns)
return (columns, rows)
except:
pass
return (80, 24) | module function_definition identifier parameters block try_statement block expression_statement assignment tuple_pattern identifier identifier call attribute call attribute call attribute identifier identifier argument_list string string_start string_content string_end string string_start string_content string_end identifier argument_list identifier argument_list expression_statement assignment identifier call identifier argument_list identifier expression_statement assignment identifier call identifier argument_list identifier return_statement tuple identifier identifier except_clause block pass_statement return_statement tuple integer integer | Detect the current size of terminal window as a numer of rows and columns. |
def do_shell(self, args: argparse.Namespace) -> None:
import subprocess
tokens = [args.command] + args.command_args
for index, _ in enumerate(tokens):
if tokens[index]:
first_char = tokens[index][0]
if first_char in constants.QUOTES:
tokens[index] = utils.strip_quotes(tokens[index])
tokens[index] = os.path.expanduser(tokens[index])
if first_char in constants.QUOTES:
tokens[index] = first_char + tokens[index] + first_char
expanded_command = ' '.join(tokens)
with self.sigint_protection:
proc = subprocess.Popen(expanded_command,
stdout=subprocess.PIPE if isinstance(self.stdout, utils.StdSim) else self.stdout,
stderr=subprocess.PIPE if isinstance(sys.stderr, utils.StdSim) else sys.stderr,
shell=True)
proc_reader = utils.ProcReader(proc, self.stdout, sys.stderr)
proc_reader.wait() | module function_definition identifier parameters identifier typed_parameter identifier type attribute identifier identifier type none block import_statement dotted_name identifier expression_statement assignment identifier binary_operator list attribute identifier identifier attribute identifier identifier for_statement pattern_list identifier identifier call identifier argument_list identifier block if_statement subscript identifier identifier block expression_statement assignment identifier subscript subscript identifier identifier integer if_statement comparison_operator identifier attribute identifier identifier block expression_statement assignment subscript identifier identifier call attribute identifier identifier argument_list subscript identifier identifier expression_statement assignment subscript identifier identifier call attribute attribute identifier identifier identifier argument_list subscript identifier identifier if_statement comparison_operator identifier attribute identifier identifier block expression_statement assignment subscript identifier identifier binary_operator binary_operator identifier subscript identifier identifier identifier expression_statement assignment identifier call attribute string string_start string_content string_end identifier argument_list identifier with_statement with_clause with_item attribute identifier identifier block expression_statement assignment identifier call attribute identifier identifier argument_list identifier keyword_argument identifier conditional_expression attribute identifier identifier call identifier argument_list attribute identifier identifier attribute identifier identifier attribute identifier identifier keyword_argument identifier conditional_expression attribute identifier identifier call identifier argument_list attribute identifier identifier attribute identifier identifier attribute identifier identifier keyword_argument identifier true expression_statement assignment identifier call attribute identifier identifier argument_list identifier attribute identifier identifier attribute identifier identifier expression_statement call attribute identifier identifier argument_list | Execute a command as if at the OS prompt |
def put(self, endpoint: str, **kwargs) -> dict:
return self._request('PUT', endpoint, **kwargs) | module function_definition identifier parameters identifier typed_parameter identifier type identifier dictionary_splat_pattern identifier type identifier block return_statement call attribute identifier identifier argument_list string string_start string_content string_end identifier dictionary_splat identifier | HTTP PUT operation to API endpoint. |
def _download_extract(self, resource):
if isinstance(resource, six.string_types):
resource = resource_lib.Resource(url=resource)
def callback(path):
resource.path = path
return self._extract(resource)
return self._download(resource).then(callback) | module function_definition identifier parameters identifier identifier block if_statement call identifier argument_list identifier attribute identifier identifier block expression_statement assignment identifier call attribute identifier identifier argument_list keyword_argument identifier identifier function_definition identifier parameters identifier block expression_statement assignment attribute identifier identifier identifier return_statement call attribute identifier identifier argument_list identifier return_statement call attribute call attribute identifier identifier argument_list identifier identifier argument_list identifier | Download-extract `Resource` or url, returns Promise->path. |
def OnPasteAs(self, event):
data = self.main_window.clipboard.get_clipboard()
key = self.main_window.grid.actions.cursor
with undo.group(_("Paste As...")):
self.main_window.actions.paste_as(key, data)
self.main_window.grid.ForceRefresh()
event.Skip() | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier call attribute attribute attribute identifier identifier identifier identifier argument_list expression_statement assignment identifier attribute attribute attribute attribute identifier identifier identifier identifier identifier with_statement with_clause with_item call attribute identifier identifier argument_list call identifier argument_list string string_start string_content string_end block expression_statement call attribute attribute attribute identifier identifier identifier identifier argument_list identifier identifier expression_statement call attribute attribute attribute identifier identifier identifier identifier argument_list expression_statement call attribute identifier identifier argument_list | Clipboard paste as event handler |
def pop(self, key=util_const.NoParam, default=util_const.NoParam):
if key is not util_const.NoParam:
if default is util_const.NoParam:
return (key, self._dict.pop(key))
else:
return (key, self._dict.pop(key, default))
try:
_heap = self._heap
_dict = self._dict
val, key = self._heappop(_heap)
while key not in _dict or _dict[key] != val:
val, key = self._heappop(_heap)
except IndexError:
if len(_heap) == 0:
raise IndexError('queue is empty')
else:
raise
del _dict[key]
return key, val | module function_definition identifier parameters identifier default_parameter identifier attribute identifier identifier default_parameter identifier attribute identifier identifier block if_statement comparison_operator identifier attribute identifier identifier block if_statement comparison_operator identifier attribute identifier identifier block return_statement tuple identifier call attribute attribute identifier identifier identifier argument_list identifier else_clause block return_statement tuple identifier call attribute attribute identifier identifier identifier argument_list identifier identifier try_statement block expression_statement assignment identifier attribute identifier identifier expression_statement assignment identifier attribute identifier identifier expression_statement assignment pattern_list identifier identifier call attribute identifier identifier argument_list identifier while_statement boolean_operator comparison_operator identifier identifier comparison_operator subscript identifier identifier identifier block expression_statement assignment pattern_list identifier identifier call attribute identifier identifier argument_list identifier except_clause identifier block if_statement comparison_operator call identifier argument_list identifier integer block raise_statement call identifier argument_list string string_start string_content string_end else_clause block raise_statement delete_statement subscript identifier identifier return_statement expression_list identifier identifier | Pop the next item off the queue |
def live_scores(self, live_scores):
headers = ['League', 'Home Team Name', 'Home Team Goals',
'Away Team Goals', 'Away Team Name']
result = [headers]
result.extend([game['league'], game['homeTeamName'],
game['goalsHomeTeam'], game['goalsAwayTeam'],
game['awayTeamName']] for game in live_scores['games'])
self.generate_output(result) | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier list string string_start string_content string_end string string_start string_content string_end string string_start string_content string_end string string_start string_content string_end string string_start string_content string_end expression_statement assignment identifier list identifier expression_statement call attribute identifier identifier generator_expression list subscript identifier string string_start string_content string_end subscript identifier string string_start string_content string_end subscript identifier string string_start string_content string_end subscript identifier string string_start string_content string_end subscript identifier string string_start string_content string_end for_in_clause identifier subscript identifier string string_start string_content string_end expression_statement call attribute identifier identifier argument_list identifier | Store output of live scores to a CSV file |
def RunValidationOutputToFilename(feed, options, output_filename):
try:
output_file = open(output_filename, 'w')
exit_code = RunValidationOutputToFile(feed, options, output_file)
output_file.close()
except IOError as e:
print('Error while writing %s: %s' % (output_filename, e))
output_filename = None
exit_code = 2
if options.manual_entry and output_filename:
webbrowser.open('file://%s' % os.path.abspath(output_filename))
return exit_code | module function_definition identifier parameters identifier identifier identifier block try_statement block expression_statement assignment identifier call identifier argument_list identifier string string_start string_content string_end expression_statement assignment identifier call identifier argument_list identifier identifier identifier expression_statement call attribute identifier identifier argument_list except_clause as_pattern identifier as_pattern_target identifier block expression_statement call identifier argument_list binary_operator string string_start string_content string_end tuple identifier identifier expression_statement assignment identifier none expression_statement assignment identifier integer if_statement boolean_operator attribute identifier identifier identifier block expression_statement call attribute identifier identifier argument_list binary_operator string string_start string_content string_end call attribute attribute identifier identifier identifier argument_list identifier return_statement identifier | Validate feed, save HTML at output_filename and return an exit code. |
def morelikethis(self, index, doc_type, id, fields, **query_params):
path = make_path(index, doc_type, id, '_mlt')
query_params['mlt_fields'] = ','.join(fields)
body = query_params["body"] if "body" in query_params else None
return self._send_request('GET', path, body=body, params=query_params) | module function_definition identifier parameters identifier identifier identifier identifier identifier dictionary_splat_pattern identifier block expression_statement assignment identifier call identifier argument_list identifier identifier identifier string string_start string_content string_end expression_statement assignment subscript identifier string string_start string_content string_end call attribute string string_start string_content string_end identifier argument_list identifier expression_statement assignment identifier conditional_expression subscript identifier string string_start string_content string_end comparison_operator string string_start string_content string_end identifier none return_statement call attribute identifier identifier argument_list string string_start string_content string_end identifier keyword_argument identifier identifier keyword_argument identifier identifier | Execute a "more like this" search query against one or more fields and get back search hits. |
def textMD5(text):
m = hash_md5()
if isinstance(text, str):
m.update(text.encode())
else:
m.update(text)
return m.hexdigest() | module function_definition identifier parameters identifier block expression_statement assignment identifier call identifier argument_list if_statement call identifier argument_list identifier identifier block expression_statement call attribute identifier identifier argument_list call attribute identifier identifier argument_list else_clause block expression_statement call attribute identifier identifier argument_list identifier return_statement call attribute identifier identifier argument_list | Get md5 of a piece of text |
def _find_titles(self, row_index, column_index):
titles = []
for column_search in range(self.start[1], column_index):
cell = self.table[row_index][column_search]
if cell == None or (isinstance(cell, basestring) and not cell):
continue
elif isinstance(cell, basestring):
titles.append(cell)
else:
break
for row_search in range(self.start[0], row_index):
cell = self.table[row_search][column_index]
if cell == None or (isinstance(cell, basestring) and not cell):
continue
elif isinstance(cell, basestring):
titles.append(cell)
else:
break
return titles | module function_definition identifier parameters identifier identifier identifier block expression_statement assignment identifier list for_statement identifier call identifier argument_list subscript attribute identifier identifier integer identifier block expression_statement assignment identifier subscript subscript attribute identifier identifier identifier identifier if_statement boolean_operator comparison_operator identifier none parenthesized_expression boolean_operator call identifier argument_list identifier identifier not_operator identifier block continue_statement elif_clause call identifier argument_list identifier identifier block expression_statement call attribute identifier identifier argument_list identifier else_clause block break_statement for_statement identifier call identifier argument_list subscript attribute identifier identifier integer identifier block expression_statement assignment identifier subscript subscript attribute identifier identifier identifier identifier if_statement boolean_operator comparison_operator identifier none parenthesized_expression boolean_operator call identifier argument_list identifier identifier not_operator identifier block continue_statement elif_clause call identifier argument_list identifier identifier block expression_statement call attribute identifier identifier argument_list identifier else_clause block break_statement return_statement identifier | Helper method to find all titles for a particular cell. |
def plot_by_gene_and_domain(name, seqs, tax, id2name):
for gene in set([seq[0] for seq in list(seqs.values())]):
for domain in set([seq[1] for seq in list(seqs.values())]):
plot_insertions(name, seqs, gene, domain, tax, id2name) | module function_definition identifier parameters identifier identifier identifier identifier block for_statement identifier call identifier argument_list list_comprehension subscript identifier integer for_in_clause identifier call identifier argument_list call attribute identifier identifier argument_list block for_statement identifier call identifier argument_list list_comprehension subscript identifier integer for_in_clause identifier call identifier argument_list call attribute identifier identifier argument_list block expression_statement call identifier argument_list identifier identifier identifier identifier identifier identifier | plot insertions for each gene and domain |
def _quantize(x, params, randomize=True):
if not params.quantize:
return x
if not randomize:
return tf.bitcast(
tf.cast(x / params.quantization_scale, tf.int16), tf.float16)
abs_x = tf.abs(x)
sign_x = tf.sign(x)
y = abs_x / params.quantization_scale
y = tf.floor(y + tf.random_uniform(common_layers.shape_list(x)))
y = tf.minimum(y, tf.int16.max) * sign_x
q = tf.bitcast(tf.cast(y, tf.int16), tf.float16)
return q | module function_definition identifier parameters identifier identifier default_parameter identifier true block if_statement not_operator attribute identifier identifier block return_statement identifier if_statement not_operator identifier block return_statement call attribute identifier identifier argument_list call attribute identifier identifier argument_list binary_operator identifier attribute identifier identifier attribute identifier identifier attribute identifier identifier expression_statement assignment identifier call attribute identifier identifier argument_list identifier expression_statement assignment identifier call attribute identifier identifier argument_list identifier expression_statement assignment identifier binary_operator identifier attribute identifier identifier expression_statement assignment identifier call attribute identifier identifier argument_list binary_operator identifier call attribute identifier identifier argument_list call attribute identifier identifier argument_list identifier expression_statement assignment identifier binary_operator call attribute identifier identifier argument_list identifier attribute attribute identifier identifier identifier identifier expression_statement assignment identifier call attribute identifier identifier argument_list call attribute identifier identifier argument_list identifier attribute identifier identifier attribute identifier identifier return_statement identifier | Quantize x according to params, optionally randomizing the rounding. |
def updateEditorGeometry(self, editor, option, index):
cti = index.model().getItem(index)
if cti.checkState is None:
displayRect = option.rect
else:
checkBoxRect = widgetSubCheckBoxRect(editor, option)
offset = checkBoxRect.x() + checkBoxRect.width()
displayRect = option.rect
displayRect.adjust(offset, 0, 0, 0)
editor.setGeometry(displayRect) | module function_definition identifier parameters identifier identifier identifier identifier block expression_statement assignment identifier call attribute call attribute identifier identifier argument_list identifier argument_list identifier if_statement comparison_operator attribute identifier identifier none block expression_statement assignment identifier attribute identifier identifier else_clause block expression_statement assignment identifier call identifier argument_list identifier identifier expression_statement assignment identifier binary_operator call attribute identifier identifier argument_list call attribute identifier identifier argument_list expression_statement assignment identifier attribute identifier identifier expression_statement call attribute identifier identifier argument_list identifier integer integer integer expression_statement call attribute identifier identifier argument_list identifier | Ensures that the editor is displayed correctly with respect to the item view. |
def with_source(self, lease):
super().with_source(lease)
self.offset = lease.offset
self.sequence_number = lease.sequence_number | module function_definition identifier parameters identifier identifier block expression_statement call attribute call identifier argument_list identifier argument_list identifier expression_statement assignment attribute identifier identifier attribute identifier identifier expression_statement assignment attribute identifier identifier attribute identifier identifier | Init Azure Blob Lease from existing. |
def fetch_json(self, method, url, data=None, expected_status_code=None):
return self.fetch(method, url, data, expected_status_code).json() | module function_definition identifier parameters identifier identifier identifier default_parameter identifier none default_parameter identifier none block return_statement call attribute call attribute identifier identifier argument_list identifier identifier identifier identifier identifier argument_list | Return json decoded data from fetch |
def list_customer_users(self, customer_id):
content = self._fetch("/customer/users/%s" % customer_id)
return map(lambda x: FastlyUser(self, x), content) | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier call attribute identifier identifier argument_list binary_operator string string_start string_content string_end identifier return_statement call identifier argument_list lambda lambda_parameters identifier call identifier argument_list identifier identifier identifier | List all users from a specified customer id. |
def _from_dict(cls, _dict):
args = {}
if 'batches' in _dict:
args['batches'] = [
BatchStatus._from_dict(x) for x in (_dict.get('batches'))
]
return cls(**args) | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier dictionary if_statement comparison_operator string string_start string_content string_end identifier block expression_statement assignment subscript identifier string string_start string_content string_end list_comprehension call attribute identifier identifier argument_list identifier for_in_clause identifier parenthesized_expression call attribute identifier identifier argument_list string string_start string_content string_end return_statement call identifier argument_list dictionary_splat identifier | Initialize a Batches object from a json dictionary. |
def change_id(self, new_id):
self._load_raw_content()
self._id = new_id
self.get_filename(renew=True)
self.get_filepath(renew=True)
return | module function_definition identifier parameters identifier identifier block expression_statement call attribute identifier identifier argument_list expression_statement assignment attribute identifier identifier identifier expression_statement call attribute identifier identifier argument_list keyword_argument identifier true expression_statement call attribute identifier identifier argument_list keyword_argument identifier true return_statement | Change the id of this content. |
def getBlizzBotPlayers():
ret = {}
for pName,p in iteritems(getKnownPlayers()):
if p.isComputer:
ret[pName] = p
return ret | module function_definition identifier parameters block expression_statement assignment identifier dictionary for_statement pattern_list identifier identifier call identifier argument_list call identifier argument_list block if_statement attribute identifier identifier block expression_statement assignment subscript identifier identifier identifier return_statement identifier | identify all of Blizzard's built-in bots |
def invcdf(x):
x_flat = np.ravel(x)
x_trans = np.array([flib.ppnd16(y, 1) for y in x_flat])
return np.reshape(x_trans, np.shape(x)) | module function_definition identifier parameters identifier block expression_statement assignment identifier call attribute identifier identifier argument_list identifier expression_statement assignment identifier call attribute identifier identifier argument_list list_comprehension call attribute identifier identifier argument_list identifier integer for_in_clause identifier identifier return_statement call attribute identifier identifier argument_list identifier call attribute identifier identifier argument_list identifier | Inverse of normal cumulative density function. |
def save_config(self, cmd="write", confirm=False, confirm_response=""):
return super(IpInfusionOcNOSBase, self).save_config(
cmd=cmd, confirm=confirm, confirm_response=confirm_response
) | module function_definition identifier parameters identifier default_parameter identifier string string_start string_content string_end default_parameter identifier false default_parameter identifier string string_start string_end block return_statement call attribute call identifier argument_list identifier identifier identifier argument_list keyword_argument identifier identifier keyword_argument identifier identifier keyword_argument identifier identifier | Saves Config Using write command |
def png_img_html_from_pyplot_figure(fig: "Figure",
dpi: int = 100,
extra_html_class: str = None) -> str:
if fig is None:
return ""
memfile = io.BytesIO()
fig.savefig(memfile, format="png", dpi=dpi)
memfile.seek(0)
pngblob = memoryview(memfile.read())
return rnc_web.get_png_img_html(pngblob, extra_html_class) | module function_definition identifier parameters typed_parameter identifier type string string_start string_content string_end typed_default_parameter identifier type identifier integer typed_default_parameter identifier type identifier none type identifier block if_statement comparison_operator identifier none block return_statement string string_start string_end expression_statement assignment identifier call attribute identifier identifier argument_list expression_statement call attribute identifier identifier argument_list identifier keyword_argument identifier string string_start string_content string_end keyword_argument identifier identifier expression_statement call attribute identifier identifier argument_list integer expression_statement assignment identifier call identifier argument_list call attribute identifier identifier argument_list return_statement call attribute identifier identifier argument_list identifier identifier | Converts a ``pyplot`` figure to an HTML IMG tag with encapsulated PNG. |
def cluster_autocomplete(self, text, line, start_index, end_index):
"autocomplete for the use command, obtain list of clusters first"
if not self.CACHED_CLUSTERS:
clusters = [cluster.name for cluster in api.get_all_clusters()]
self.CACHED_CLUSTERS = clusters
if text:
return [cluster for cluster in self.CACHED_CLUSTERS if cluster.startswith(text)]
else:
return self.CACHED_CLUSTERS | module function_definition identifier parameters identifier identifier identifier identifier identifier block expression_statement string string_start string_content string_end if_statement not_operator attribute identifier identifier block expression_statement assignment identifier list_comprehension attribute identifier identifier for_in_clause identifier call attribute identifier identifier argument_list expression_statement assignment attribute identifier identifier identifier if_statement identifier block return_statement list_comprehension identifier for_in_clause identifier attribute identifier identifier if_clause call attribute identifier identifier argument_list identifier else_clause block return_statement attribute identifier identifier | autocomplete for the use command, obtain list of clusters first |
def reset(self):
simulation = self.survey_scenario.simulation
holder = simulation.get_holder(self.weight_name)
holder.array = numpy.array(self.initial_weight, dtype = holder.variable.dtype) | module function_definition identifier parameters identifier block expression_statement assignment identifier attribute attribute identifier identifier identifier expression_statement assignment identifier call attribute identifier identifier argument_list attribute identifier identifier expression_statement assignment attribute identifier identifier call attribute identifier identifier argument_list attribute identifier identifier keyword_argument identifier attribute attribute identifier identifier identifier | Reset the calibration to it initial state |
def upload(self, local_path, remote_url):
bucket, key = _parse_url(remote_url)
with open(local_path, 'rb') as fp:
return self.call("PutObject", bucket=bucket, key=key, body=fp) | module function_definition identifier parameters identifier identifier identifier block expression_statement assignment pattern_list identifier identifier call identifier argument_list identifier with_statement with_clause with_item as_pattern call identifier argument_list identifier string string_start string_content string_end as_pattern_target identifier block return_statement call attribute identifier identifier argument_list string string_start string_content string_end keyword_argument identifier identifier keyword_argument identifier identifier keyword_argument identifier identifier | Copy a local file to an S3 location. |
def Escape(self, string="", **_):
self.stack[-1] += self.STRING_ESCAPES.get(string, string) | module function_definition identifier parameters identifier default_parameter identifier string string_start string_end dictionary_splat_pattern identifier block expression_statement augmented_assignment subscript attribute identifier identifier unary_operator integer call attribute attribute identifier identifier identifier argument_list identifier identifier | Support standard string escaping. |
def launch(self, tunnelPorts=None):
if self.isLocal():
c = self._getWorkerCommandList()
self.subprocesses.append(subprocess.Popen(c))
else:
BASE_SSH[0] = self.ssh_executable
sshCmd = BASE_SSH if not self.rsh else BASE_RSH
if tunnelPorts is not None:
sshCmd += [
'-R {0}:127.0.0.1:{0}'.format(tunnelPorts[0]),
'-R {0}:127.0.0.1:{0}'.format(tunnelPorts[1]),
]
self.subprocesses.append(
subprocess.Popen(sshCmd + [self.hostname, self.getCommand()],
bufsize=-1,
stdout=None,
stderr=None,
stdin=subprocess.PIPE
)
)
return self.subprocesses | module function_definition identifier parameters identifier default_parameter identifier none block if_statement call attribute identifier identifier argument_list block expression_statement assignment identifier call attribute identifier identifier argument_list expression_statement call attribute attribute identifier identifier identifier argument_list call attribute identifier identifier argument_list identifier else_clause block expression_statement assignment subscript identifier integer attribute identifier identifier expression_statement assignment identifier conditional_expression identifier not_operator attribute identifier identifier identifier if_statement comparison_operator identifier none block expression_statement augmented_assignment identifier list call attribute string string_start string_content string_end identifier argument_list subscript identifier integer call attribute string string_start string_content string_end identifier argument_list subscript identifier integer expression_statement call attribute attribute identifier identifier identifier argument_list call attribute identifier identifier argument_list binary_operator identifier list attribute identifier identifier call attribute identifier identifier argument_list keyword_argument identifier unary_operator integer keyword_argument identifier none keyword_argument identifier none keyword_argument identifier attribute identifier identifier return_statement attribute identifier identifier | Launch every worker assigned on this host. |
def run_task(self, task, source_patterns=None):
self.log('Running Task: %s...' % task.get('name', ''), 1)
self.default_encoding = task.get('default_encoding', '')
options = self.setup_spellchecker(task)
personal_dict = self.setup_dictionary(task)
glob_flags = self._to_flags(task.get('glob_flags', "N|B|G"))
self._build_pipeline(task)
if not source_patterns:
source_patterns = task.get('sources', [])
for sources in self._walk_src(source_patterns, glob_flags, self.pipeline_steps):
if self.pipeline_steps is not None:
yield from self._spelling_pipeline(sources, options, personal_dict)
else:
yield from self.spell_check_no_pipeline(sources, options, personal_dict) | module function_definition identifier parameters identifier identifier default_parameter identifier none block expression_statement call attribute identifier identifier argument_list binary_operator string string_start string_content string_end call attribute identifier identifier argument_list string string_start string_content string_end string string_start string_end integer expression_statement assignment attribute identifier identifier call attribute identifier identifier argument_list string string_start string_content string_end string string_start string_end expression_statement assignment identifier call attribute identifier identifier argument_list identifier expression_statement assignment identifier call attribute identifier identifier argument_list identifier expression_statement assignment identifier call attribute identifier identifier argument_list call attribute identifier identifier argument_list string string_start string_content string_end string string_start string_content string_end expression_statement call attribute identifier identifier argument_list identifier if_statement not_operator identifier block expression_statement assignment identifier call attribute identifier identifier argument_list string string_start string_content string_end list for_statement identifier call attribute identifier identifier argument_list identifier identifier attribute identifier identifier block if_statement comparison_operator attribute identifier identifier none block expression_statement yield call attribute identifier identifier argument_list identifier identifier identifier else_clause block expression_statement yield call attribute identifier identifier argument_list identifier identifier identifier | Walk source and initiate spell check. |
def check_config(config):
essential_keys = ['number_earthquakes']
for key in essential_keys:
if key not in config:
raise ValueError('For Kijko Nonparametric Gaussian the key %s '
'needs to be set in the configuation' % key)
if config.get('tolerance', 0.0) <= 0.0:
config['tolerance'] = 0.05
if config.get('maximum_iterations', 0) < 1:
config['maximum_iterations'] = 100
if config.get('number_samples', 0) < 2:
config['number_samples'] = 51
return config | module function_definition identifier parameters identifier block expression_statement assignment identifier list string string_start string_content string_end for_statement identifier identifier block if_statement comparison_operator identifier identifier block raise_statement call identifier argument_list binary_operator concatenated_string string string_start string_content string_end string string_start string_content string_end identifier if_statement comparison_operator call attribute identifier identifier argument_list string string_start string_content string_end float float block expression_statement assignment subscript identifier string string_start string_content string_end float if_statement comparison_operator call attribute identifier identifier argument_list string string_start string_content string_end integer integer block expression_statement assignment subscript identifier string string_start string_content string_end integer if_statement comparison_operator call attribute identifier identifier argument_list string string_start string_content string_end integer integer block expression_statement assignment subscript identifier string string_start string_content string_end integer return_statement identifier | Check config file inputs and overwrite bad values with the defaults |
def delete_by_user_name(user_name):
try:
del_count = TabMember.delete().where(TabMember.user_name == user_name)
del_count.execute()
return True
except:
return False | module function_definition identifier parameters identifier block try_statement block expression_statement assignment identifier call attribute call attribute identifier identifier argument_list identifier argument_list comparison_operator attribute identifier identifier identifier expression_statement call attribute identifier identifier argument_list return_statement true except_clause block return_statement false | Delete user in the database by `user_name`. |
def unpacktar(tarfile, destdir):
nullfd = open(os.devnull, "w")
tarfile = cygpath(os.path.abspath(tarfile))
log.debug("unpack tar %s into %s", tarfile, destdir)
try:
check_call([TAR, '-xzf', tarfile], cwd=destdir,
stdout=nullfd, preexec_fn=_noumask)
except Exception:
log.exception("Error unpacking tar file %s to %s", tarfile, destdir)
raise
nullfd.close() | module function_definition identifier parameters identifier identifier block expression_statement assignment identifier call identifier argument_list attribute identifier identifier string string_start string_content string_end expression_statement assignment identifier call identifier argument_list call attribute attribute identifier identifier identifier argument_list identifier expression_statement call attribute identifier identifier argument_list string string_start string_content string_end identifier identifier try_statement block expression_statement call identifier argument_list list identifier string string_start string_content string_end identifier keyword_argument identifier identifier keyword_argument identifier identifier keyword_argument identifier identifier except_clause identifier block expression_statement call attribute identifier identifier argument_list string string_start string_content string_end identifier identifier raise_statement expression_statement call attribute identifier identifier argument_list | Unpack given tarball into the specified dir |
def parseSLURM(string):
import subprocess, os
hostsstr = subprocess.check_output(["scontrol", "show", "hostnames", string])
if sys.version_info.major > 2:
hostsstr = hostsstr.decode()
hosts = hostsstr.split(os.linesep)
hosts = filter(None, hosts)
hosts = [(host, 1) for host in hosts]
return hosts | module function_definition identifier parameters identifier block import_statement dotted_name identifier dotted_name identifier expression_statement assignment identifier call attribute identifier identifier argument_list list string string_start string_content string_end string string_start string_content string_end string string_start string_content string_end identifier if_statement comparison_operator attribute attribute identifier identifier identifier integer block expression_statement assignment identifier call attribute identifier identifier argument_list expression_statement assignment identifier call attribute identifier identifier argument_list attribute identifier identifier expression_statement assignment identifier call identifier argument_list none identifier expression_statement assignment identifier list_comprehension tuple identifier integer for_in_clause identifier identifier return_statement identifier | Return a host list from a SLURM string |
def omnigraffle(self):
temp = self.rdf_source("dot")
try:
from os.path import expanduser
home = expanduser("~")
filename = home + "/tmp/turtle_sketch.dot"
f = open(filename, "w")
except:
filename = "turtle_sketch.dot"
f = open(filename, "w")
f.write(temp)
f.close()
try:
os.system("open " + filename)
except:
os.system("start " + filename) | module function_definition identifier parameters identifier block expression_statement assignment identifier call attribute identifier identifier argument_list string string_start string_content string_end try_statement block import_from_statement dotted_name identifier identifier dotted_name identifier expression_statement assignment identifier call identifier argument_list string string_start string_content string_end expression_statement assignment identifier binary_operator identifier string string_start string_content string_end expression_statement assignment identifier call identifier argument_list identifier string string_start string_content string_end except_clause block expression_statement assignment identifier string string_start string_content string_end expression_statement assignment identifier call identifier argument_list identifier string string_start string_content string_end expression_statement call attribute identifier identifier argument_list identifier expression_statement call attribute identifier identifier argument_list try_statement block expression_statement call attribute identifier identifier argument_list binary_operator string string_start string_content string_end identifier except_clause block expression_statement call attribute identifier identifier argument_list binary_operator string string_start string_content string_end identifier | tries to open an export directly in omnigraffle |
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