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(module (function_definition (function_name_box_text) function_name_box_text (parameters (identifier_text) identifier_text (identifier_width) identifier_width (default_parameter (identifier_offset) identifier_offset (integer_0) integer_0 )default_parameter )paramete...
Return text inside an ascii textbox
(module (function_definition (function_name_match_comment) function_name_match_comment (parameters (identifier_self) identifier_self )parameters (block (expression_statement (assignment (identifier_match) identifier_match (call (attribute ...
matches the multiline version of a comment
(module (function_definition (function_name__change_kind) function_name__change_kind (parameters (identifier_self) identifier_self (identifier_post_uid) identifier_post_uid )parameters (block (expression_statement (assignment (identifier_post_data) identifier_post_d...
To modify the category of the post, and kind.
(module (function_definition (function_name_acknowledge_streamer) function_name_acknowledge_streamer (parameters (identifier_self) identifier_self (identifier_index) identifier_index (identifier_ack) identifier_ack (identifier_force) identifier_force )parameters (block (i...
Acknowledge a streamer value as received from the remote side.
(module (function_definition (function_name_merge_nested_environment_dicts) function_name_merge_nested_environment_dicts (parameters (identifier_env_dicts) identifier_env_dicts (default_parameter (identifier_env_name) identifier_env_name (None) None )default_parameter (...
Return single-level dictionary from dictionary of dictionaries.
(module (function_definition (function_name_match) function_name_match (parameters (identifier_tgt) identifier_tgt (default_parameter (identifier_opts) identifier_opts (None) None )default_parameter )parameters (block (if_statement (not_operator ...
Matches based on range cluster
(module (function_definition (function_name_register_foreign_device) function_name_register_foreign_device (parameters (identifier_self) identifier_self (identifier_addr) identifier_addr (identifier_ttl) identifier_ttl )parameters (block (if_statement (identifier__debug...
Add a foreign device to the FDT.
(module (function_definition (function_name__write) function_name__write (parameters (identifier_self) identifier_self (identifier_stream) identifier_stream (identifier_text) identifier_text (identifier_byte_order) identifier_byte_order )parameters (block (if_statement ...
Write the data to a PLY file.
(module (function_definition (function_name_open) function_name_open (parameters (identifier_self) identifier_self (identifier_filename) identifier_filename (default_parameter (identifier_mode) identifier_mode (string_'r') string_'r' )default_parameter (default_pa...
Open a file on the remote system and return a file-like object.
(module (function_definition (function_name_setup_buttons) function_name_setup_buttons (parameters (identifier_self) identifier_self )parameters (block (expression_statement (assignment (attribute (identifier_self) identifier_self (identifier_fromc...
Setup the buttons of the outline explorer widget toolbar.
(module (function_definition (function_name_to_dict) function_name_to_dict (parameters (identifier_self) identifier_self )parameters (block (return_statement (dictionary (pair (string_'id') string_'id' (binary_operator (binary_operato...
Return a dict representation of KnwKBRVAL.
(module (function_definition (function_name_table_path) function_name_table_path (parameters (identifier_cls) identifier_cls (identifier_project) identifier_project (identifier_instance) identifier_instance (identifier_table) identifier_table )parameters (block (return_st...
Return a fully-qualified table string.
(module (function_definition (function_name_to_plot_units) function_name_to_plot_units (parameters (identifier_self) identifier_self (identifier_data) identifier_data (default_parameter (identifier_dtype_vert) identifier_dtype_vert (False) False )default_parameter )...
Convert the given data to plotting units.
(module (function_definition (function_name_success) function_name_success (parameters (identifier_self) identifier_self (identifier_objects) identifier_objects (default_parameter (identifier_message) identifier_message (None) None )default_parameter )parameters ...
Redirects the user to success page with informative message
(module (function_definition (function_name__load_meta_cache) function_name__load_meta_cache (parameters (identifier_self) identifier_self )parameters (block (try_statement (block (if_statement (call (attribute (identifier_self) i...
Try to load metadata from file.
(module (function_definition (function_name_story_archive) function_name_story_archive (parameters (identifier_request) identifier_request (identifier_slug) identifier_slug (default_parameter (identifier_template_name) identifier_template_name (string_'staffmembers/story_arch...
Return the list of stories written by this staff member
(module (function_definition (function_name_accept_quality) function_name_accept_quality (parameters (identifier_accept) identifier_accept (default_parameter (identifier_default) identifier_default (integer_1) integer_1 )default_parameter )parameters (block (exp...
Separates out the quality score from the accepted content_type
(module (function_definition (function_name_directory_files) function_name_directory_files (parameters (identifier_path) identifier_path )parameters (block (for_statement (identifier_entry) identifier_entry (call (attribute (identifier_os) identifier_o...
Yield directory file names.
(module (function_definition (function_name_detect_vcs) function_name_detect_vcs (parameters )parameters (block (expression_statement (assignment (identifier_location) identifier_location (call (attribute (attribute (identifie...
Detect the version control system used for the current directory.
(module (function_definition (function_name_local_bifurcation_angles) function_name_local_bifurcation_angles (parameters (identifier_neurites) identifier_neurites (default_parameter (identifier_neurite_type) identifier_neurite_type (attribute (identifier_NeuriteType) iden...
Get a list of local bifurcation angles in a collection of neurites
(module (function_definition (function_name_validate) function_name_validate (parameters (identifier_self) identifier_self (identifier_instance) identifier_instance (identifier_value) identifier_value )parameters (block (if_statement (call (identifier_isinstan...
Check if value is a valid datetime object or JSON datetime string
(module (function_definition (function_name__SendTerminationMessage) function_name__SendTerminationMessage (parameters (identifier_self) identifier_self (default_parameter (identifier_status) identifier_status (None) None )default_parameter )parameters (block (i...
This notifies the parent flow of our termination.
(module (function_definition (function_name_read_kioslaverc) function_name_read_kioslaverc (parameters (identifier_kde_config_dir) identifier_kde_config_dir )parameters (block (expression_statement (assignment (identifier_data) identifier_data (dictionary ...
Read kioslaverc into data dictionary.
(module (function_definition (function_name_render_to_response) function_name_render_to_response (parameters (identifier_self) identifier_self (identifier_form) identifier_form (dictionary_splat_pattern (identifier_kwargs) identifier_kwargs )dictionary_splat_pattern )parame...
Render Datatables expected JSON format
(module (function_definition (function_name_add_network_to_dhcp_agent) function_name_add_network_to_dhcp_agent (parameters (identifier_self) identifier_self (identifier_dhcp_agent) identifier_dhcp_agent (default_parameter (identifier_body) identifier_body (None) None )d...
Adds a network to dhcp agent.
(module (function_definition (function_name_mean_crossings) function_name_mean_crossings (parameters (identifier_X) identifier_X )parameters (block (expression_statement (assignment (identifier_X) identifier_X (call (attribute (identifi...
Computes number of mean crossings for each variable in a segmented time series
(module (function_definition (function_name_can_execute) function_name_can_execute (parameters (identifier_self) identifier_self )parameters (block (return_statement (boolean_operator (not_operator (attribute (identifier_self) identifier_self ...
True if we can execute the callback.
(module (function_definition (function_name_path) function_name_path (parameters (identifier_self) identifier_self )parameters (block (expression_statement (assignment (identifier_out) identifier_out (call (attribute (attribute ...
Timestamp for placing into filepaths.
(module (function_definition (function_name_int32) function_name_int32 (parameters (identifier_x) identifier_x )parameters (block (if_statement (comparison_operator (identifier_x) identifier_x (integer_0xFFFFFFFF) integer_0xFFFFFFFF )comparison_operator ...
Return a signed or unsigned int
(module (function_definition (function_name_clean_slug) function_name_clean_slug (parameters (identifier_self) identifier_self )parameters (block (expression_statement (assignment (identifier_source) identifier_source (call (attribute (...
Generate a valid slug, in case the given one is taken
(module (function_definition (function_name_split_vcf) function_name_split_vcf (parameters (identifier_in_file) identifier_in_file (identifier_ref_file) identifier_ref_file (identifier_config) identifier_config (default_parameter (identifier_out_dir) identifier_out_dir ...
Split a VCF file into separate files by chromosome.
(module (function_definition (function_name_next_tzolkin_haab) function_name_next_tzolkin_haab (parameters (identifier_tzolkin) identifier_tzolkin (identifier_haab) identifier_haab (identifier_jd) identifier_jd )parameters (block (expression_statement (assignment ...
For a given haab-tzolk'in combination, and a Julian day count, find the next occurrance of the combination after the date
(module (function_definition (function_name_calcTm) function_name_calcTm (parameters (identifier_seq) identifier_seq (default_parameter (identifier_mv_conc) identifier_mv_conc (integer_50) integer_50 )default_parameter (default_parameter (identifier_dv_conc) ide...
Return the tm of `seq` as a float.
(module (function_definition (function_name_authorize) function_name_authorize (parameters (identifier_self) identifier_self )parameters (block (with_statement (with_clause (with_item (as_pattern (call (attribute ...
Prepare the master to expect a signing request
(module (function_definition (function_name_prompt_terminal) function_name_prompt_terminal (parameters (identifier_path) identifier_path )parameters (block (function_definition (function_name_rlinput) function_name_rlinput (parameters (identifier_prompt_msg) ident...
Prompt for a new filename via terminal.
(module (function_definition (function_name__int_size_to_type) function_name__int_size_to_type (parameters (identifier_size) identifier_size )parameters (block (if_statement (comparison_operator (identifier_size) identifier_size (integer_8) integer_8 )co...
Return the Catalyst datatype from the size of integers.
(module (function_definition (function_name_create_workspace) function_name_create_workspace (parameters (identifier_self) identifier_self )parameters (type (None) None )type (block (function_definition (function_name_create_clicked) function_name_create_clicked ...
Pose a dialog to name and create a workspace.
(module (function_definition (function_name_print_result_from_timeit) function_name_print_result_from_timeit (parameters (default_parameter (identifier_stmt) identifier_stmt (string_'pass') string_'pass' )default_parameter (default_parameter (identifier_setup) identif...
Clean function to know how much time took the execution of one statement
(module (function_definition (function_name_setup_logfile_raw) function_name_setup_logfile_raw (parameters (identifier_self) identifier_self (identifier_logfile) identifier_logfile (default_parameter (identifier_mode) identifier_mode (string_'w') string_'w' )default_par...
start logging raw bytes to the given logfile, without timestamps
(module (function_definition (function_name_salt_api) function_name_salt_api (parameters )parameters (block (import_statement (dotted_name (identifier_salt) identifier_salt (identifier_utils) identifier_utils (identifier_process) identifier_process )...
The main function for salt-api
(module (function_definition (function_name_params) function_name_params (parameters (identifier_self) identifier_self )parameters (block (if_statement (comparison_operator (attribute (identifier_self) identifier_self (identifier__GETPOST) identifi...
A combined MultiDict with POST and GET parameters.
(module (function_definition (function_name_conflicts_with) function_name_conflicts_with (parameters (identifier_self) identifier_self (identifier_section) identifier_section )parameters (block (expression_statement (string_"Returns True if the given section conflicts with th...
Returns True if the given section conflicts with this time range.
(module (function_definition (function_name__get_tgt_length) function_name__get_tgt_length (parameters (identifier_self) identifier_self (identifier_var) identifier_var )parameters (block (if_statement (boolean_operator (comparison_operator (attribute ...
Get the total length of the whole reference sequence
(module (function_definition (function_name__modify_event) function_name__modify_event (parameters (identifier_self) identifier_self (identifier_event_name) identifier_event_name (identifier_method) identifier_method (identifier_func) identifier_func )parameters (block (i...
Wrapper to call a list's method from one of the events
(module (function_definition (function_name_find_identifier) function_name_find_identifier (parameters (identifier_self) identifier_self )parameters (block (expression_statement (assignment (identifier_features) identifier_features (subscript (attrib...
Find a unique identifier for each feature, create it if needed.
(module (function_definition (function_name_write_csv_line) function_name_write_csv_line (parameters (identifier_mol) identifier_mol (identifier_csv_writer) identifier_csv_writer (identifier_options) identifier_options )parameters (block (expression_statement (assignmen...
Parse mol object and write a line to the csv file
(module (function_definition (function_name_on_scroll) function_name_on_scroll (parameters (identifier_self) identifier_self )parameters (block (try_statement (block (expression_statement (assignment (identifier_sw) identifier_sw (s...
Called to scroll text
(module (function_definition (function_name_until_state) function_name_until_state (parameters (identifier_self) identifier_self (identifier_state) identifier_state (default_parameter (identifier_timeout) identifier_timeout (None) None )default_parameter )parameters...
Return a tornado Future that will resolve when the requested state is set
(module (function_definition (function_name_enqueue_jobs) function_name_enqueue_jobs (parameters (identifier_self) identifier_self )parameters (block (expression_statement (call (attribute (attribute (identifier_self) identifier_self ...
Move scheduled jobs into queues.
(module (function_definition (function_name_validate_model_specification_file) function_name_validate_model_specification_file (parameters (typed_parameter (identifier_file_path) identifier_file_path (type (identifier_str) identifier_str )type )typed_parameter ...
Ensures the provided file is a yaml file
(module (function_definition (function_name_write_data_to_file) function_name_write_data_to_file (parameters (identifier_data) identifier_data (identifier_filepath) identifier_filepath )parameters (block (try_statement (block (expression_statement (call ...
Write data to file
(module (function_definition (function_name_iter_ROOT_classes) function_name_iter_ROOT_classes (parameters )parameters (block (expression_statement (assignment (identifier_class_index) identifier_class_index (string_"http://root.cern.ch/root/html/ClassIndex.html") str...
Iterator over all available ROOT classes
(module (function_definition (function_name_DropTables) function_name_DropTables (parameters (identifier_self) identifier_self )parameters (block (expression_statement (assignment (pattern_list (identifier_rows) identifier_rows (identifier__) ident...
Drop all existing tables.
(module (function_definition (function_name_delta_stream) function_name_delta_stream (parameters (identifier_self) identifier_self (default_parameter (identifier_target) identifier_target (string_'HEAD') string_'HEAD' )default_parameter (default_parameter (ident...
Return an iterator of policy changes along a commit lineage in a repo.
(module (function_definition (function_name_file_matches_regexps) function_name_file_matches_regexps (parameters (identifier_filename) identifier_filename (identifier_patterns) identifier_patterns )parameters (block (return_statement (call (identifier_any) identifie...
Does this filename match any of the regular expressions?
(module (function_definition (function_name_version) function_name_version (parameters )parameters (block (expression_statement (assignment (identifier_namespace) identifier_namespace (dictionary )dictionary )assignment )expression_statement ...
Get the version number without importing the mrcfile package.
(module (function_definition (function_name_add) function_name_add (parameters (identifier_self) identifier_self (identifier_client_id) identifier_client_id (identifier_email_address) identifier_email_address (identifier_name) identifier_name (identifier_access_level) identifier_...
Adds a person to a client. Password is optional and if not supplied, an invitation will be emailed to the person
(module (function_definition (function_name_write_nginx_config) function_name_write_nginx_config (parameters (identifier_self) identifier_self )parameters (block (expression_statement (assignment (identifier_log) identifier_log (call (attribute ...
Write the Nginx configuration file for this Site
(module (function_definition (function_name_validate) function_name_validate (parameters (identifier_self) identifier_self )parameters (block (for_statement (identifier_client) identifier_client (attribute (identifier_self) identifier_self (identifier_cl...
Check the value of the config attributes.
(module (function_definition (function_name_find_data) function_name_find_data (parameters (identifier_path) identifier_path (default_parameter (identifier_warn) identifier_warn (True) True )default_parameter )parameters (block (expression_statement (ass...
Return the absolute path to a data file within the data directory.
(module (function_definition (function_name_clone) function_name_clone (parameters (identifier_self) identifier_self (default_parameter (identifier_date) identifier_date (None) None )default_parameter (default_parameter (identifier_data) identifier_data ...
Create a clone of timeseries
(module (function_definition (function_name_eval) function_name_eval (parameters (identifier_self) identifier_self (identifier_script) identifier_script (default_parameter (identifier_keys) identifier_keys (list )list )default_parameter (default_parameter ...
Execute a Lua script server side.
(module (function_definition (function_name_connect) function_name_connect (parameters (identifier_self) identifier_self (identifier_connection) identifier_connection )parameters (block (if_statement (attribute (identifier_self) identifier_self (identifier...
Connects to the specified given connection using the given auth key.
(module (function_definition (function_name_do_metric_create_raw) function_name_do_metric_create_raw (parameters (identifier_mc) identifier_mc (identifier_args) identifier_args )parameters (block (try_statement (block (expression_statement (call ...
Create metric from raw json body.
(module (function_definition (function_name_send_unsubscribe) function_name_send_unsubscribe (parameters (identifier_self) identifier_self (identifier_dup) identifier_dup (identifier_topics) identifier_topics )parameters (block (expression_statement (assignment ...
Send unsubscribe COMMAND to server.
(module (function_definition (function_name_run) function_name_run (parameters (identifier_self) identifier_self )parameters (type (None) None )type (block (while_statement (not_operator (attribute (identifier_self) identifier_self (i...
processes entries in the queue until told to stop
(module (function_definition (function_name_run_track) function_name_run_track (parameters (identifier_track) identifier_track (default_parameter (identifier_result_hosts) identifier_result_hosts (None) None )default_parameter (default_parameter (identifier_crat...
Execute a track file
(module (function_definition (function_name_restart) function_name_restart (parameters (identifier_self) identifier_self (default_parameter (identifier_all) identifier_all (False) False )default_parameter )parameters (block (if_statement (identifier_all)...
Restarts the given process.
(module (function_definition (function_name_set) function_name_set (parameters (identifier_self) identifier_self (identifier_option) identifier_option (identifier_value) identifier_value )parameters (block (if_statement (comparison_operator (attribute ...
Sets an option to a value.
(module (function_definition (function_name_remove_group) function_name_remove_group (parameters (identifier_self) identifier_self (identifier_group) identifier_group )parameters (block (if_statement (not_operator (call (identifier_isinstance) identifier...
Remove the specified group.
(module (function_definition (function_name__custom_icon) function_name__custom_icon (parameters (identifier_self) identifier_self (identifier_name) identifier_name (dictionary_splat_pattern (identifier_kwargs) identifier_kwargs )dictionary_splat_pattern )parameters (bl...
Return the custom icon corresponding to the given name.
(module (function_definition (function_name_error) function_name_error (parameters (identifier_self) identifier_self (identifier_msg) identifier_msg )parameters (block (expression_statement (assignment (attribute (identifier_self) identifier_self ...
Callback run when a recoverable parsing error occurs
(module (function_definition (function_name_fmt_cell) function_name_fmt_cell (parameters (identifier_self) identifier_self (identifier_value) identifier_value (identifier_width) identifier_width (identifier_cell_formating) identifier_cell_formating (dictionary_splat_pattern ...
Format sigle table cell.
(module (function_definition (function_name__handle_template) function_name__handle_template (parameters (identifier_self) identifier_self (identifier_token) identifier_token )parameters (block (expression_statement (assignment (identifier_params) identifier_params ...
Handle a case where a template is at the head of the tokens.
(module (function_definition (function_name_htmlize_list) function_name_htmlize_list (parameters (identifier_items) identifier_items )parameters (block (expression_statement (assignment (identifier_out) identifier_out (list (string_"<ul>") string_"<u...
Turn a python list into an html list.
(module (function_definition (function_name__dequantize) function_name__dequantize (parameters (identifier_q) identifier_q (identifier_params) identifier_params )parameters (block (if_statement (not_operator (attribute (identifier_params) identifier_para...
Dequantize q according to params.
(module (function_definition (function_name_create_with_virtualenv) function_name_create_with_virtualenv (parameters (identifier_self) identifier_self (identifier_interpreter) identifier_interpreter (identifier_virtualenv_options) identifier_virtualenv_options )parameters (block ...
Create a virtualenv using the virtualenv lib.
(module (function_definition (function_name_cyan) function_name_cyan (parameters (identifier_cls) identifier_cls )parameters (block (expression_statement (string_"Make the text foreground color cyan.") string_"Make the text foreground color cyan." )expression_statement ...
Make the text foreground color cyan.
(module (function_definition (function_name_restore_initial_state) function_name_restore_initial_state (parameters (identifier_self) identifier_self )parameters (block (expression_statement (call (attribute (attribute (identifier_self) identifier...
Restores initial cursors and initial active editor.
(module (function_definition (function_name__stop_process) function_name__stop_process (parameters (identifier_p) identifier_p (identifier_name) identifier_name )parameters (block (if_statement (comparison_operator (call (attribute (identif...
Stop process, by applying terminate and kill.
(module (function_definition (function_name_render) function_name_render (parameters (identifier_self) identifier_self (identifier_view) identifier_view (default_parameter (identifier_context) identifier_context (None) None )default_parameter )parameters (block ...
Render `view` with this block's runtime and the supplied `context`
(module (function_definition (function_name__has_bcftools_germline_stats) function_name__has_bcftools_germline_stats (parameters (identifier_data) identifier_data )parameters (block (expression_statement (assignment (identifier_stats_file) identifier_stats_file ...
Check for the presence of a germline stats file, CWL compatible.
(module (function_definition (function_name_delete) function_name_delete (parameters (identifier_self) identifier_self (identifier_key) identifier_key )parameters (block (expression_statement (call (identifier_validate_is_bytes) identifier_validate_is_bytes ...
Equals to setting the value to None
(module (function_definition (function_name_map) function_name_map (parameters (identifier_self) identifier_self (identifier_fn) identifier_fn (list_splat_pattern (identifier_seq) identifier_seq )list_splat_pattern )parameters (block (expression_statement ...
Perform a map operation distributed among the workers. Will
(module (function_definition (function_name__processDDL) function_name__processDDL (parameters (identifier_self) identifier_self )parameters (block (expression_statement (assignment (identifier_sql_statements) identifier_sql_statements (call (attribu...
Generate and process table SQL, SQLLite version
(module (function_definition (function_name_relevant_rules_for_match) function_name_relevant_rules_for_match (parameters (identifier_self) identifier_self (identifier_action) identifier_action (identifier_subject) identifier_subject )parameters (block (expression_statement ...
retrive match action and subject
(module (function_definition (function_name__calculate_dispersion) function_name__calculate_dispersion (parameters (typed_parameter (identifier_X) identifier_X (type (generic_type (identifier_Union) identifier_Union (type_parameter (type ...
Calculate the dispersion between actual points and their assigned centroids
(module (function_definition (function_name_charge) function_name_charge (parameters (identifier_self) identifier_self (identifier_data) identifier_data )parameters (block (expression_statement (assignment (identifier_token) identifier_token (call ...
Second stage of an OPR request
(module (function_definition (function_name_getDefaultParList) function_name_getDefaultParList (parameters (identifier_self) identifier_self )parameters (block (if_statement (comparison_operator (attribute (identifier_self) identifier_self (identif...
Return a par list just like ours, but with all default values.
(module (function_definition (function_name_between_or_equal_to) function_name_between_or_equal_to (parameters (identifier_y) identifier_y (identifier_z) identifier_z )parameters (block (return_statement (call (identifier__combinable) identifier__combinable ...
Greater than or equal to y and less than or equal to z.
(module (function_definition (function_name_load_config) function_name_load_config (parameters (identifier_args) identifier_args (default_parameter (identifier_config_path) identifier_config_path (string_".inlineplz.yml") string_".inlineplz.yml" )default_parameter )parame...
Load inline-plz config from yaml config file with reasonable defaults.
(module (function_definition (function_name_process_save) function_name_process_save (parameters (identifier_X) identifier_X (identifier_y) identifier_y (identifier_tokenizer) identifier_tokenizer (identifier_proc_data_path) identifier_proc_data_path (default_parameter (i...
Process text and save as Dataset
(module (function_definition (function_name_construct_mapping) function_name_construct_mapping (parameters (identifier_self) identifier_self (identifier_node) identifier_node (default_parameter (identifier_deep) identifier_deep (False) False )default_parameter )para...
Use ODict for maps
(module (function_definition (function_name_newDocPI) function_name_newDocPI (parameters (identifier_self) identifier_self (identifier_name) identifier_name (identifier_content) identifier_content )parameters (block (expression_statement (assignment (identifie...
Creation of a processing instruction element.
(module (function_definition (function_name_batch) function_name_batch (parameters (identifier_input_iter) identifier_input_iter (default_parameter (identifier_batch_size) identifier_batch_size (integer_32) integer_32 )default_parameter )parameters (block (expre...
Batches data from an iterator that returns single items at a time.
(module (function_definition (function_name___set_log_file_name) function_name___set_log_file_name (parameters (identifier_self) identifier_self )parameters (block (expression_statement (assignment (pattern_list (identifier_dir) identifier_dir (ide...
Automatically set logFileName attribute
(module (function_definition (function_name_sorted) function_name_sorted (parameters (identifier_cls) identifier_cls (identifier_items) identifier_items (identifier_orders) identifier_orders )parameters (block (return_statement (call (identifier_sorted) identi...
Returns the elements in `items` sorted according to `orders`
(module (function_definition (function_name_from_memdb_file) function_name_from_memdb_file (parameters (identifier_path) identifier_path )parameters (block (expression_statement (assignment (identifier_path) identifier_path (call (identifier_to_bytes...
Creates a sourcemap view from MemDB at a given file.
(module (function_definition (function_name__check_realign) function_name__check_realign (parameters (identifier_data) identifier_data )parameters (block (if_statement (boolean_operator (comparison_operator (string_"gatk4") string_"gatk4" (call ...
Check for realignment, which is not supported in GATK4
(module (function_definition (function_name__create_entry) function_name__create_entry (parameters (typed_parameter (identifier_entry) identifier_entry (type (identifier_dict) identifier_dict )type )typed_parameter (typed_default_parameter (identifie...
Filter and normalize the output of pipdeptree entry.