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(module (function_definition (function_name__item_type) function_name__item_type (parameters (identifier_item) identifier_item )parameters (block (expression_statement (assignment (identifier_tag) identifier_tag (subscript (identifier_item) identifier_item (string_'tag') string_'tag' )subscript )assignment )expression_statement (expression_statement (assignment (identifier_style) identifier_style (call (attribute (identifier_item) identifier_item (identifier_get) identifier_get )attribute (argument_list (string_'style') string_'style' (None) None )argument_list )call )assignment )expression_statement (if_statement (comparison_operator (identifier_tag) identifier_tag (string_'p') string_'p' )comparison_operator (block (if_statement (boolean_operator (comparison_operator (identifier_style) identifier_style (None) None )comparison_operator (comparison_operator (string_'paragraph') string_'paragraph' (identifier_style) identifier_style )comparison_operator )boolean_operator (block (return_statement (string_'paragraph') string_'paragraph' )return_statement )block (else_clause (block (return_statement (identifier_style) identifier_style )return_statement )block )else_clause )if_statement )block (elif_clause (comparison_operator (identifier_tag) identifier_tag (string_'span') string_'span' )comparison_operator (block (if_statement (comparison_operator (identifier_style) identifier_style (tuple (None) None (string_'normal-text') string_'normal-text' )tuple )comparison_operator (block (return_statement (string_'text') string_'text' )return_statement )block (elif_clause (comparison_operator (identifier_style) identifier_style (string_'url') string_'url' )comparison_operator (block (return_statement (string_'link') string_'link' )return_statement )block )elif_clause (else_clause (block (return_statement (identifier_style) identifier_style )return_statement )block )else_clause )if_statement )block )elif_clause (elif_clause (comparison_operator (identifier_tag) identifier_tag (string_'h') string_'h' )comparison_operator (block (assert_statement (comparison_operator (identifier_style) identifier_style (None) None )comparison_operator )assert_statement (return_statement (identifier_style) identifier_style )return_statement )block )elif_clause (elif_clause (comparison_operator (identifier_tag) identifier_tag (tuple (string_'list') string_'list' (string_'list-item') string_'list-item' (string_'line-break') string_'line-break' )tuple )comparison_operator (block (if_statement (comparison_operator (identifier_style) identifier_style (string_'_numbered_list') string_'_numbered_list' )comparison_operator (block (return_statement (string_'numbered-list') string_'numbered-list' )return_statement )block (else_clause (block (return_statement (identifier_tag) identifier_tag )return_statement )block )else_clause )if_statement )block )elif_clause (elif_clause (comparison_operator (identifier_tag) identifier_tag (string_'s') string_'s' )comparison_operator (block (return_statement (string_'spaces') string_'spaces' )return_statement )block )elif_clause )if_statement (raise_statement (call (identifier_Exception) identifier_Exception (argument_list (call (attribute (concatenated_string (string_"The tag '{0}' with style '{1}' hasn't ") string_"The tag '{0}' with style '{1}' hasn't " (string_"been implemented.") string_"been implemented." )concatenated_string (identifier_format) identifier_format )attribute (argument_list (identifier_tag) identifier_tag (identifier_style) identifier_style )argument_list )call )argument_list )call )raise_statement )block )function_definition )module
Indicate to the ODF reader the type of the block or text.
(module (function_definition (function_name_rlmb_long_stochastic_discrete_simulation_deterministic_starts) function_name_rlmb_long_stochastic_discrete_simulation_deterministic_starts (parameters )parameters (block (expression_statement (assignment (identifier_hparams) identifier_hparams (call (identifier_rlmb_base_stochastic_discrete) identifier_rlmb_base_stochastic_discrete (argument_list )argument_list )call )assignment )expression_statement (expression_statement (assignment (attribute (identifier_hparams) identifier_hparams (identifier_generative_model_params) identifier_generative_model_params )attribute (string_"next_frame_basic_stochastic_discrete_long") string_"next_frame_basic_stochastic_discrete_long" )assignment )expression_statement (expression_statement (assignment (attribute (identifier_hparams) identifier_hparams (identifier_ppo_epochs_num) identifier_ppo_epochs_num )attribute (integer_1000) integer_1000 )assignment )expression_statement (expression_statement (assignment (attribute (identifier_hparams) identifier_hparams (identifier_simulation_random_starts) identifier_simulation_random_starts )attribute (False) False )assignment )expression_statement (return_statement (identifier_hparams) identifier_hparams )return_statement )block )function_definition )module
Long setting with stochastic discrete model & deterministic sim starts.
(module (function_definition (function_name_count_missense_per_gene) function_name_count_missense_per_gene (parameters (identifier_lines) identifier_lines )parameters (block (expression_statement (assignment (identifier_counts) identifier_counts (dictionary )dictionary )assignment )expression_statement (for_statement (identifier_x) identifier_x (identifier_lines) identifier_lines (block (expression_statement (assignment (identifier_x) identifier_x (call (attribute (identifier_x) identifier_x (identifier_split) identifier_split )attribute (argument_list (string_"\t") string_"\t" )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_gene) identifier_gene (subscript (identifier_x) identifier_x (integer_0) integer_0 )subscript )assignment )expression_statement (expression_statement (assignment (identifier_consequence) identifier_consequence (subscript (identifier_x) identifier_x (integer_3) integer_3 )subscript )assignment )expression_statement (if_statement (comparison_operator (identifier_gene) identifier_gene (identifier_counts) identifier_counts )comparison_operator (block (expression_statement (assignment (subscript (identifier_counts) identifier_counts (identifier_gene) identifier_gene )subscript (integer_0) integer_0 )assignment )expression_statement )block )if_statement (if_statement (comparison_operator (identifier_consequence) identifier_consequence (string_"missense_variant") string_"missense_variant" )comparison_operator (block (continue_statement )continue_statement )block )if_statement (expression_statement (augmented_assignment (subscript (identifier_counts) identifier_counts (identifier_gene) identifier_gene )subscript (integer_1) integer_1 )augmented_assignment )expression_statement )block )for_statement (return_statement (identifier_counts) identifier_counts )return_statement )block )function_definition )module
count the number of missense variants in each gene.
(module (function_definition (function_name__isvalid) function_name__isvalid (parameters (identifier_self) identifier_self (identifier_datatype) identifier_datatype )parameters (block (if_statement (comparison_operator (identifier_datatype) identifier_datatype (attribute (identifier_self) identifier_self (identifier_meta) identifier_meta )attribute )comparison_operator (block (return_statement (call (identifier_bool) identifier_bool (argument_list (call (attribute (subscript (attribute (identifier_Dap) identifier_Dap (identifier__meta_valid) identifier__meta_valid )attribute (identifier_datatype) identifier_datatype )subscript (identifier_match) identifier_match )attribute (argument_list (subscript (attribute (identifier_self) identifier_self (identifier_meta) identifier_meta )attribute (identifier_datatype) identifier_datatype )subscript )argument_list )call )argument_list )call )return_statement )block (else_clause (block (return_statement (comparison_operator (identifier_datatype) identifier_datatype (attribute (identifier_Dap) identifier_Dap (identifier__optional_meta) identifier__optional_meta )attribute )comparison_operator )return_statement )block )else_clause )if_statement )block )function_definition )module
Checks if the given datatype is valid in meta
(module (function_definition (function_name_egg_name) function_name_egg_name (parameters (identifier_self) identifier_self )parameters (block (expression_statement (assignment (identifier_filename) identifier_filename (binary_operator (string_"%s-%s-py%s") string_"%s-%s-py%s" (tuple (call (identifier_to_filename) identifier_to_filename (argument_list (attribute (identifier_self) identifier_self (identifier_project_name) identifier_project_name )attribute )argument_list )call (call (identifier_to_filename) identifier_to_filename (argument_list (attribute (identifier_self) identifier_self (identifier_version) identifier_version )attribute )argument_list )call (boolean_operator (attribute (identifier_self) identifier_self (identifier_py_version) identifier_py_version )attribute (identifier_PY_MAJOR) identifier_PY_MAJOR )boolean_operator )tuple )binary_operator )assignment )expression_statement (if_statement (attribute (identifier_self) identifier_self (identifier_platform) identifier_platform )attribute (block (expression_statement (augmented_assignment (identifier_filename) identifier_filename (binary_operator (string_'-') string_'-' (attribute (identifier_self) identifier_self (identifier_platform) identifier_platform )attribute )binary_operator )augmented_assignment )expression_statement )block )if_statement (return_statement (identifier_filename) identifier_filename )return_statement )block )function_definition )module
Return what this distribution's standard .egg filename should be
(module (function_definition (function_name__visit_functiondef) function_name__visit_functiondef (parameters (identifier_self) identifier_self (identifier_cls) identifier_cls (identifier_node) identifier_node (identifier_parent) identifier_parent )parameters (block (expression_statement (call (attribute (attribute (identifier_self) identifier_self (identifier__global_names) identifier__global_names )attribute (identifier_append) identifier_append )attribute (argument_list (dictionary )dictionary )argument_list )call )expression_statement (expression_statement (assignment (pattern_list (identifier_node) identifier_node (identifier_doc) identifier_doc )pattern_list (call (attribute (identifier_self) identifier_self (identifier__get_doc) identifier__get_doc )attribute (argument_list (identifier_node) identifier_node )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_newnode) identifier_newnode (call (identifier_cls) identifier_cls (argument_list (attribute (identifier_node) identifier_node (identifier_name) identifier_name )attribute (identifier_doc) identifier_doc (attribute (identifier_node) identifier_node (identifier_lineno) identifier_lineno )attribute (attribute (identifier_node) identifier_node (identifier_col_offset) identifier_col_offset )attribute (identifier_parent) identifier_parent )argument_list )call )assignment )expression_statement (if_statement (attribute (identifier_node) identifier_node (identifier_decorator_list) identifier_decorator_list )attribute (block (expression_statement (assignment (identifier_decorators) identifier_decorators (call (attribute (identifier_self) identifier_self (identifier_visit_decorators) identifier_visit_decorators )attribute (argument_list (identifier_node) identifier_node (identifier_newnode) identifier_newnode )argument_list )call )assignment )expression_statement )block (else_clause (block (expression_statement (assignment (identifier_decorators) identifier_decorators (None) None )assignment )expression_statement )block )else_clause )if_statement (if_statement (boolean_operator (identifier_PY3) identifier_PY3 (attribute (identifier_node) identifier_node (identifier_returns) identifier_returns )attribute )boolean_operator (block (expression_statement (assignment (identifier_returns) identifier_returns (call (attribute (identifier_self) identifier_self (identifier_visit) identifier_visit )attribute (argument_list (attribute (identifier_node) identifier_node (identifier_returns) identifier_returns )attribute (identifier_newnode) identifier_newnode )argument_list )call )assignment )expression_statement )block (else_clause (block (expression_statement (assignment (identifier_returns) identifier_returns (None) None )assignment )expression_statement )block )else_clause )if_statement (expression_statement (assignment (identifier_type_comment_args) identifier_type_comment_args (assignment (identifier_type_comment_returns) identifier_type_comment_returns (None) None )assignment )assignment )expression_statement (expression_statement (assignment (identifier_type_comment_annotation) identifier_type_comment_annotation (call (attribute (identifier_self) identifier_self (identifier_check_function_type_comment) identifier_check_function_type_comment )attribute (argument_list (identifier_node) identifier_node )argument_list )call )assignment )expression_statement (if_statement (identifier_type_comment_annotation) identifier_type_comment_annotation (block (expression_statement (assignment (pattern_list (identifier_type_comment_returns) identifier_type_comment_returns (identifier_type_comment_args) identifier_type_comment_args )pattern_list (identifier_type_comment_annotation) identifier_type_comment_annotation )assignment )expression_statement )block )if_statement (expression_statement (call (attribute (identifier_newnode) identifier_newnode (identifier_postinit) identifier_postinit )attribute (argument_list (keyword_argument (identifier_args) identifier_args (call (attribute (identifier_self) identifier_self (identifier_visit) identifier_visit )attribute (argument_list (attribute (identifier_node) identifier_node (identifier_args) identifier_args )attribute (identifier_newnode) identifier_newnode )argument_list )call )keyword_argument (keyword_argument (identifier_body) identifier_body (list_comprehension (call (attribute (identifier_self) identifier_self (identifier_visit) identifier_visit )attribute (argument_list (identifier_child) identifier_child (identifier_newnode) identifier_newnode )argument_list )call (for_in_clause (identifier_child) identifier_child (attribute (identifier_node) identifier_node (identifier_body) identifier_body )attribute )for_in_clause )list_comprehension )keyword_argument (keyword_argument (identifier_decorators) identifier_decorators (identifier_decorators) identifier_decorators )keyword_argument (keyword_argument (identifier_returns) identifier_returns (identifier_returns) identifier_returns )keyword_argument (keyword_argument (identifier_type_comment_returns) identifier_type_comment_returns (identifier_type_comment_returns) identifier_type_comment_returns )keyword_argument (keyword_argument (identifier_type_comment_args) identifier_type_comment_args (identifier_type_comment_args) identifier_type_comment_args )keyword_argument )argument_list )call )expression_statement (expression_statement (call (attribute (attribute (identifier_self) identifier_self (identifier__global_names) identifier__global_names )attribute (identifier_pop) identifier_pop )attribute (argument_list )argument_list )call )expression_statement (return_statement (identifier_newnode) identifier_newnode )return_statement )block )function_definition )module
visit an FunctionDef node to become astroid
(module (function_definition (function_name_start_review) function_name_start_review (parameters (identifier_self) identifier_self )parameters (block (if_statement (attribute (identifier_self) identifier_self (identifier_set_status) identifier_set_status )attribute (block (expression_statement (call (attribute (attribute (identifier_self) identifier_self (identifier_github_repo) identifier_github_repo )attribute (identifier_create_status) identifier_create_status )attribute (argument_list (keyword_argument (identifier_state) identifier_state (string_"pending") string_"pending" )keyword_argument (keyword_argument (identifier_description) identifier_description (string_"Static analysis in progress.") string_"Static analysis in progress." )keyword_argument (keyword_argument (identifier_context) identifier_context (string_"inline-plz") string_"inline-plz" )keyword_argument (keyword_argument (identifier_sha) identifier_sha (attribute (identifier_self) identifier_self (identifier_last_sha) identifier_last_sha )attribute )keyword_argument )argument_list )call )expression_statement )block )if_statement )block )function_definition )module
Mark our review as started.
(module (function_definition (function_name_unique) function_name_unique (parameters (identifier_transactions) identifier_transactions )parameters (block (expression_statement (assignment (identifier_seen) identifier_seen (call (identifier_set) identifier_set (argument_list )argument_list )call )assignment )expression_statement (return_statement (list_comprehension (identifier_x) identifier_x (for_in_clause (identifier_x) identifier_x (identifier_transactions) identifier_transactions )for_in_clause (if_clause (not_operator (parenthesized_expression (boolean_operator (comparison_operator (identifier_x) identifier_x (identifier_seen) identifier_seen )comparison_operator (call (attribute (identifier_seen) identifier_seen (identifier_add) identifier_add )attribute (argument_list (identifier_x) identifier_x )argument_list )call )boolean_operator )parenthesized_expression )not_operator )if_clause )list_comprehension )return_statement )block )function_definition )module
Remove any duplicate entries.
(module (function_definition (function_name_GetConsistentValueOrRaise) function_name_GetConsistentValueOrRaise (parameters (identifier_self) identifier_self (identifier_error_format) identifier_error_format (default_parameter (identifier_context) identifier_context (None) None )default_parameter )parameters (block (if_statement (attribute (identifier_self) identifier_self (identifier_has_error) identifier_has_error )attribute (block (expression_statement (assignment (identifier_full_context) identifier_full_context (call (identifier_dict) identifier_dict (argument_list (attribute (identifier_self) identifier_self (identifier__context) identifier__context )attribute )argument_list )call )assignment )expression_statement (if_statement (identifier_context) identifier_context (block (expression_statement (call (attribute (identifier_full_context) identifier_full_context (identifier_update) identifier_update )attribute (argument_list (identifier_context) identifier_context )argument_list )call )expression_statement )block )if_statement (raise_statement (call (identifier_ValueError) identifier_ValueError (argument_list (call (attribute (identifier_error_format) identifier_error_format (identifier_format) identifier_format )attribute (argument_list (dictionary_splat (identifier_full_context) identifier_full_context )dictionary_splat )argument_list )call )argument_list )call )raise_statement )block )if_statement (return_statement (attribute (identifier_self) identifier_self (identifier_value) identifier_value )attribute )return_statement )block )function_definition )module
Gets consistent value or raises ValueError with formatted contexts.
(module (function_definition (function_name_info) function_name_info (parameters (identifier_message) identifier_message (list_splat_pattern (identifier_args) identifier_args )list_splat_pattern (dictionary_splat_pattern (identifier_kwargs) identifier_kwargs )dictionary_splat_pattern )parameters (block (if_statement (comparison_operator (string_'end') string_'end' (identifier_kwargs) identifier_kwargs )comparison_operator (block (expression_statement (assignment (identifier_end) identifier_end (subscript (identifier_kwargs) identifier_kwargs (string_'end') string_'end' )subscript )assignment )expression_statement )block (else_clause (block (expression_statement (assignment (identifier_end) identifier_end (string_'\n') string_'\n' )assignment )expression_statement )block )else_clause )if_statement (if_statement (comparison_operator (call (identifier_len) identifier_len (argument_list (identifier_args) identifier_args )argument_list )call (integer_0) integer_0 )comparison_operator (block (expression_statement (call (attribute (attribute (identifier_sys) identifier_sys (identifier_stdout) identifier_stdout )attribute (identifier_write) identifier_write )attribute (argument_list (identifier_message) identifier_message )argument_list )call )expression_statement )block (else_clause (block (expression_statement (call (attribute (attribute (identifier_sys) identifier_sys (identifier_stdout) identifier_stdout )attribute (identifier_write) identifier_write )attribute (argument_list (binary_operator (identifier_message) identifier_message (identifier_args) identifier_args )binary_operator )argument_list )call )expression_statement )block )else_clause )if_statement (expression_statement (call (attribute (attribute (identifier_sys) identifier_sys (identifier_stdout) identifier_stdout )attribute (identifier_write) identifier_write )attribute (argument_list (identifier_end) identifier_end )argument_list )call )expression_statement (expression_statement (call (attribute (attribute (identifier_sys) identifier_sys (identifier_stdout) identifier_stdout )attribute (identifier_flush) identifier_flush )attribute (argument_list )argument_list )call )expression_statement )block )function_definition )module
write a message to stdout
(module (function_definition (function_name_output) function_name_output (parameters (identifier_id) identifier_id (identifier_url) identifier_url )parameters (block (try_statement (block (expression_statement (assignment (identifier_experiment) identifier_experiment (call (attribute (call (identifier_ExperimentClient) identifier_ExperimentClient (argument_list )argument_list )call (identifier_get) identifier_get )attribute (argument_list (call (identifier_normalize_job_name) identifier_normalize_job_name (argument_list (identifier_id) identifier_id )argument_list )call )argument_list )call )assignment )expression_statement )block (except_clause (identifier_FloydException) identifier_FloydException (block (expression_statement (assignment (identifier_experiment) identifier_experiment (call (attribute (call (identifier_ExperimentClient) identifier_ExperimentClient (argument_list )argument_list )call (identifier_get) identifier_get )attribute (argument_list (identifier_id) identifier_id )argument_list )call )assignment )expression_statement )block )except_clause )try_statement (expression_statement (assignment (identifier_output_dir_url) identifier_output_dir_url (binary_operator (string_"%s/%s/files") string_"%s/%s/files" (tuple (attribute (identifier_floyd) identifier_floyd (identifier_floyd_web_host) identifier_floyd_web_host )attribute (attribute (identifier_experiment) identifier_experiment (identifier_name) identifier_name )attribute )tuple )binary_operator )assignment )expression_statement (if_statement (identifier_url) identifier_url (block (expression_statement (call (attribute (identifier_floyd_logger) identifier_floyd_logger (identifier_info) identifier_info )attribute (argument_list (identifier_output_dir_url) identifier_output_dir_url )argument_list )call )expression_statement )block (else_clause (block (expression_statement (call (attribute (identifier_floyd_logger) identifier_floyd_logger (identifier_info) identifier_info )attribute (argument_list (string_"Opening output path in your browser ...") string_"Opening output path in your browser ..." )argument_list )call )expression_statement (expression_statement (call (attribute (identifier_webbrowser) identifier_webbrowser (identifier_open) identifier_open )attribute (argument_list (identifier_output_dir_url) identifier_output_dir_url )argument_list )call )expression_statement )block )else_clause )if_statement )block )function_definition )module
View the files from a job.
(module (function_definition (function_name_do_cat) function_name_do_cat (parameters (identifier_self) identifier_self (identifier_path) identifier_path )parameters (block (expression_statement (assignment (identifier_path) identifier_path (subscript (identifier_path) identifier_path (integer_0) integer_0 )subscript )assignment )expression_statement (expression_statement (assignment (identifier_tmp_file_path) identifier_tmp_file_path (binary_operator (attribute (identifier_self) identifier_self (identifier_TMP_PATH) identifier_TMP_PATH )attribute (string_'tmp') string_'tmp' )binary_operator )assignment )expression_statement (if_statement (not_operator (call (attribute (attribute (identifier_os) identifier_os (identifier_path) identifier_path )attribute (identifier_exists) identifier_exists )attribute (argument_list (attribute (identifier_self) identifier_self (identifier_TMP_PATH) identifier_TMP_PATH )attribute )argument_list )call )not_operator (block (expression_statement (call (attribute (identifier_os) identifier_os (identifier_makedirs) identifier_makedirs )attribute (argument_list (attribute (identifier_self) identifier_self (identifier_TMP_PATH) identifier_TMP_PATH )attribute )argument_list )call )expression_statement )block )if_statement (expression_statement (assignment (identifier_f) identifier_f (call (attribute (attribute (identifier_self) identifier_self (identifier_n) identifier_n )attribute (identifier_downloadFile) identifier_downloadFile )attribute (argument_list (binary_operator (attribute (identifier_self) identifier_self (identifier_current_path) identifier_current_path )attribute (identifier_path) identifier_path )binary_operator (identifier_tmp_file_path) identifier_tmp_file_path )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_f) identifier_f (call (identifier_open) identifier_open (argument_list (identifier_tmp_file_path) identifier_tmp_file_path (string_'r') string_'r' )argument_list )call )assignment )expression_statement (expression_statement (call (attribute (attribute (identifier_self) identifier_self (identifier_stdout) identifier_stdout )attribute (identifier_write) identifier_write )attribute (argument_list (call (attribute (identifier_f) identifier_f (identifier_read) identifier_read )attribute (argument_list )argument_list )call )argument_list )call )expression_statement (expression_statement (call (attribute (attribute (identifier_self) identifier_self (identifier_stdout) identifier_stdout )attribute (identifier_write) identifier_write )attribute (argument_list (string_"\n") string_"\n" )argument_list )call )expression_statement )block )function_definition )module
display the contents of a file
(module (function_definition (function_name_emit) function_name_emit (parameters (identifier_self) identifier_self (identifier_item) identifier_item (default_parameter (identifier_defaults) identifier_defaults (None) None )default_parameter (default_parameter (identifier_stencil) identifier_stencil (None) None )default_parameter (default_parameter (identifier_to_log) identifier_to_log (False) False )default_parameter (default_parameter (identifier_item_formatter) identifier_item_formatter (None) None )default_parameter )parameters (block (expression_statement (assignment (identifier_item_text) identifier_item_text (call (attribute (identifier_self) identifier_self (identifier_format_item) identifier_format_item )attribute (argument_list (identifier_item) identifier_item (identifier_defaults) identifier_defaults (identifier_stencil) identifier_stencil )argument_list )call )assignment )expression_statement (if_statement (identifier_item_formatter) identifier_item_formatter (block (expression_statement (assignment (identifier_item_text) identifier_item_text (call (identifier_item_formatter) identifier_item_formatter (argument_list (identifier_item_text) identifier_item_text )argument_list )call )assignment )expression_statement )block )if_statement (if_statement (boolean_operator (comparison_operator (identifier_item) identifier_item (None) None )comparison_operator (call (attribute (identifier_os) identifier_os (identifier_isatty) identifier_isatty )attribute (argument_list (call (attribute (attribute (identifier_sys) identifier_sys (identifier_stdout) identifier_stdout )attribute (identifier_fileno) identifier_fileno )attribute (argument_list )argument_list )call )argument_list )call )boolean_operator (block (expression_statement (assignment (identifier_item_text) identifier_item_text (call (attribute (string_'') string_'' (identifier_join) identifier_join )attribute (argument_list (tuple (attribute (identifier_config) identifier_config (identifier_output_header_ecma48) identifier_output_header_ecma48 )attribute (identifier_item_text) identifier_item_text (string_"\x1B[0m") string_"\x1B[0m" )tuple )argument_list )call )assignment )expression_statement )block )if_statement (if_statement (identifier_to_log) identifier_to_log (block (if_statement (call (identifier_callable) identifier_callable (argument_list (identifier_to_log) identifier_to_log )argument_list )call (block (expression_statement (call (identifier_to_log) identifier_to_log (argument_list (identifier_item_text) identifier_item_text )argument_list )call )expression_statement )block (else_clause (block (expression_statement (call (attribute (attribute (identifier_self) identifier_self (identifier_LOG) identifier_LOG )attribute (identifier_info) identifier_info )attribute (argument_list (identifier_item_text) identifier_item_text )argument_list )call )expression_statement )block )else_clause )if_statement )block (elif_clause (attribute (attribute (identifier_self) identifier_self (identifier_options) identifier_options )attribute (identifier_nul) identifier_nul )attribute (block (expression_statement (call (attribute (attribute (identifier_sys) identifier_sys (identifier_stdout) identifier_stdout )attribute (identifier_write) identifier_write )attribute (argument_list (binary_operator (identifier_item_text) identifier_item_text (string_'\0') string_'\0' )binary_operator )argument_list )call )expression_statement (expression_statement (call (attribute (attribute (identifier_sys) identifier_sys (identifier_stdout) identifier_stdout )attribute (identifier_flush) identifier_flush )attribute (argument_list )argument_list )call )expression_statement )block )elif_clause (else_clause (block (expression_statement (call (identifier_print) identifier_print (argument_list (identifier_item_text) identifier_item_text )argument_list )call )expression_statement )block )else_clause )if_statement (return_statement (binary_operator (call (attribute (identifier_item_text) identifier_item_text (identifier_count) identifier_count )attribute (argument_list (string_'\n') string_'\n' )argument_list )call (integer_1) integer_1 )binary_operator )return_statement )block )function_definition )module
Print an item to stdout, or the log on INFO level.
(module (function_definition (function_name_load_json) function_name_load_json (parameters (identifier_file) identifier_file )parameters (block (expression_statement (assignment (identifier_here) identifier_here (call (attribute (attribute (identifier_os) identifier_os (identifier_path) identifier_path )attribute (identifier_dirname) identifier_dirname )attribute (argument_list (call (attribute (attribute (identifier_os) identifier_os (identifier_path) identifier_path )attribute (identifier_abspath) identifier_abspath )attribute (argument_list (identifier___file__) identifier___file__ )argument_list )call )argument_list )call )assignment )expression_statement (with_statement (with_clause (with_item (as_pattern (call (identifier_open) identifier_open (argument_list (call (attribute (attribute (identifier_os) identifier_os (identifier_path) identifier_path )attribute (identifier_join) identifier_join )attribute (argument_list (identifier_here) identifier_here (identifier_file) identifier_file )argument_list )call )argument_list )call (as_pattern_target (identifier_jfile) identifier_jfile )as_pattern_target )as_pattern )with_item )with_clause (block (expression_statement (assignment (identifier_data) identifier_data (call (attribute (identifier_json) identifier_json (identifier_load) identifier_load )attribute (argument_list (identifier_jfile) identifier_jfile )argument_list )call )assignment )expression_statement )block )with_statement (return_statement (identifier_data) identifier_data )return_statement )block )function_definition )module
Load JSON file at app start
(module (function_definition (function_name_find_agent) function_name_find_agent (parameters (identifier_self) identifier_self (identifier_desc) identifier_desc )parameters (block (expression_statement (assignment (identifier_agent_id) identifier_agent_id (parenthesized_expression (conditional_expression (attribute (identifier_desc) identifier_desc (identifier_doc_id) identifier_doc_id )attribute (call (attribute (identifier_IDocument) identifier_IDocument (identifier_providedBy) identifier_providedBy )attribute (argument_list (identifier_desc) identifier_desc )argument_list )call (identifier_desc) identifier_desc )conditional_expression )parenthesized_expression )assignment )expression_statement (expression_statement (call (attribute (identifier_self) identifier_self (identifier_log) identifier_log )attribute (argument_list (string_"I'm trying to find the agent with id: %s") string_"I'm trying to find the agent with id: %s" (identifier_agent_id) identifier_agent_id )argument_list )call )expression_statement (expression_statement (assignment (identifier_result) identifier_result (call (identifier_first) identifier_first (generator_expression (identifier_x) identifier_x (for_in_clause (identifier_x) identifier_x (attribute (identifier_self) identifier_self (identifier__agents) identifier__agents )attribute )for_in_clause (if_clause (comparison_operator (attribute (attribute (identifier_x) identifier_x (identifier__descriptor) identifier__descriptor )attribute (identifier_doc_id) identifier_doc_id )attribute (identifier_agent_id) identifier_agent_id )comparison_operator )if_clause )generator_expression )call )assignment )expression_statement (return_statement (call (attribute (identifier_defer) identifier_defer (identifier_succeed) identifier_succeed )attribute (argument_list (identifier_result) identifier_result )argument_list )call )return_statement )block )function_definition )module
Gives medium class of the agent if the agency hosts it.
(module (function_definition (function_name_best) function_name_best (parameters (identifier_self) identifier_self )parameters (block (expression_statement (assignment (identifier_b) identifier_b (tuple (unary_operator (float_1e999999) float_1e999999 )unary_operator (None) None )tuple )assignment )expression_statement (for_statement (pattern_list (identifier_k) identifier_k (identifier_c) identifier_c )pattern_list (call (identifier_iteritems) identifier_iteritems (argument_list (attribute (identifier_self) identifier_self (identifier_counts) identifier_counts )attribute )argument_list )call (block (expression_statement (assignment (identifier_b) identifier_b (call (identifier_max) identifier_max (argument_list (identifier_b) identifier_b (tuple (identifier_c) identifier_c (identifier_k) identifier_k )tuple )argument_list )call )assignment )expression_statement )block )for_statement (return_statement (subscript (identifier_b) identifier_b (integer_1) integer_1 )subscript )return_statement )block )function_definition )module
Returns the element with the highest probability.
(module (function_definition (function_name_get) function_name_get (parameters (identifier_self) identifier_self (identifier_idx) identifier_idx (default_parameter (identifier_default) identifier_default (string_'') string_'' )default_parameter )parameters (block (if_statement (boolean_operator (call (identifier_isinstance) identifier_isinstance (argument_list (identifier_idx) identifier_idx (identifier_int) identifier_int )argument_list )call (parenthesized_expression (boolean_operator (comparison_operator (identifier_idx) identifier_idx (call (identifier_len) identifier_len (argument_list (identifier_self) identifier_self )argument_list )call )comparison_operator (comparison_operator (identifier_idx) identifier_idx (binary_operator (unary_operator (integer_1) integer_1 )unary_operator (call (identifier_len) identifier_len (argument_list (identifier_self) identifier_self )argument_list )call )binary_operator )comparison_operator )boolean_operator )parenthesized_expression )boolean_operator (block (return_statement (identifier_default) identifier_default )return_statement )block )if_statement (return_statement (call (attribute (call (identifier_super) identifier_super (argument_list )argument_list )call (identifier___getitem__) identifier___getitem__ )attribute (argument_list (identifier_idx) identifier_idx )argument_list )call )return_statement )block )function_definition )module
Returns the element at idx, or default if idx is beyond the length of the list
(module (function_definition (function_name__get_assessment_part_collection) function_name__get_assessment_part_collection (parameters (identifier_self) identifier_self (identifier_assessment_part_id) identifier_assessment_part_id )parameters (block (expression_statement (assignment (identifier_collection) identifier_collection (call (identifier_JSONClientValidated) identifier_JSONClientValidated (argument_list (string_'assessment_authoring') string_'assessment_authoring' (keyword_argument (identifier_collection) identifier_collection (string_'AssessmentPart') string_'AssessmentPart' )keyword_argument (keyword_argument (identifier_runtime) identifier_runtime (attribute (identifier_self) identifier_self (identifier__runtime) identifier__runtime )attribute )keyword_argument )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_assessment_part_map) identifier_assessment_part_map (call (attribute (identifier_collection) identifier_collection (identifier_find_one) identifier_find_one )attribute (argument_list (dictionary (pair (string_'_id') string_'_id' (call (identifier_ObjectId) identifier_ObjectId (argument_list (call (attribute (identifier_assessment_part_id) identifier_assessment_part_id (identifier_get_identifier) identifier_get_identifier )attribute (argument_list )argument_list )call )argument_list )call )pair )dictionary )argument_list )call )assignment )expression_statement (if_statement (comparison_operator (string_'itemIds') string_'itemIds' (identifier_assessment_part_map) identifier_assessment_part_map )comparison_operator (block (raise_statement (call (attribute (identifier_errors) identifier_errors (identifier_NotFound) identifier_NotFound )attribute (argument_list (string_'no Items are assigned to this AssessmentPart') string_'no Items are assigned to this AssessmentPart' )argument_list )call )raise_statement )block )if_statement (return_statement (expression_list (identifier_assessment_part_map) identifier_assessment_part_map (identifier_collection) identifier_collection )expression_list )return_statement )block )function_definition )module
Returns a Mongo Collection and AssessmentPart given a AssessmentPart Id
(module (function_definition (function_name_update_commands) function_name_update_commands (parameters (identifier_self) identifier_self (identifier_commands_str) identifier_commands_str )parameters (block (expression_statement (assignment (identifier_commands) identifier_commands (call (identifier_dict) identifier_dict (argument_list (call (identifier_parse_qsl) identifier_parse_qsl (argument_list (identifier_commands_str) identifier_commands_str (keyword_argument (identifier_keep_blank_values) identifier_keep_blank_values (True) True )keyword_argument )argument_list )call )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier__if) identifier__if (call (attribute (identifier_commands) identifier_commands (identifier_get) identifier_get )attribute (argument_list (string_"if") string_"if" (attribute (identifier_self) identifier_self (identifier__if) identifier__if )attribute )argument_list )call )assignment )expression_statement (if_statement (identifier__if) identifier__if (block (expression_statement (assignment (attribute (identifier_self) identifier_self (identifier__if) identifier__if )attribute (call (identifier_Condition) identifier_Condition (argument_list (identifier__if) identifier__if )argument_list )call )assignment )expression_statement )block )if_statement (expression_statement (call (attribute (identifier_self) identifier_self (identifier__set_int) identifier__set_int )attribute (argument_list (identifier_commands) identifier_commands (string_"max_length") string_"max_length" )argument_list )call )expression_statement (expression_statement (call (attribute (identifier_self) identifier_self (identifier__set_int) identifier__set_int )attribute (argument_list (identifier_commands) identifier_commands (string_"min_length") string_"min_length" )argument_list )call )expression_statement (expression_statement (assignment (attribute (identifier_self) identifier_self (identifier_color) identifier_color )attribute (call (attribute (identifier_self) identifier_self (identifier__check_color) identifier__check_color )attribute (argument_list (call (attribute (identifier_commands) identifier_commands (identifier_get) identifier_get )attribute (argument_list (string_"color") string_"color" )argument_list )call )argument_list )call )assignment )expression_statement (expression_statement (assignment (attribute (identifier_self) identifier_self (identifier_not_zero) identifier_not_zero )attribute (boolean_operator (comparison_operator (string_"not_zero") string_"not_zero" (identifier_commands) identifier_commands )comparison_operator (attribute (identifier_self) identifier_self (identifier_not_zero) identifier_not_zero )attribute )boolean_operator )assignment )expression_statement (expression_statement (assignment (attribute (identifier_self) identifier_self (identifier_show) identifier_show )attribute (boolean_operator (comparison_operator (string_"show") string_"show" (identifier_commands) identifier_commands )comparison_operator (attribute (identifier_self) identifier_self (identifier_show) identifier_show )attribute )boolean_operator )assignment )expression_statement (expression_statement (assignment (attribute (identifier_self) identifier_self (identifier_soft) identifier_soft )attribute (boolean_operator (comparison_operator (string_"soft") string_"soft" (identifier_commands) identifier_commands )comparison_operator (attribute (identifier_self) identifier_self (identifier_soft) identifier_soft )attribute )boolean_operator )assignment )expression_statement )block )function_definition )module
update with commands from the block
(module (function_definition (function_name_relpath_for) function_name_relpath_for (parameters (identifier_self) identifier_self (identifier_path) identifier_path )parameters (block (if_statement (comparison_operator (attribute (identifier_self) identifier_self (identifier_parent_dir) identifier_parent_dir )attribute (tuple (string_".") string_"." (string_"") string_"" )tuple )comparison_operator (block (return_statement (identifier_path) identifier_path )return_statement )block )if_statement (if_statement (comparison_operator (identifier_path) identifier_path (attribute (identifier_self) identifier_self (identifier_parent_dir) identifier_parent_dir )attribute )comparison_operator (block (return_statement (string_"") string_"" )return_statement )block )if_statement (expression_statement (assignment (identifier_dirname) identifier_dirname (boolean_operator (call (attribute (attribute (identifier_os) identifier_os (identifier_path) identifier_path )attribute (identifier_dirname) identifier_dirname )attribute (argument_list (identifier_path) identifier_path )argument_list )call (string_".") string_"." )boolean_operator )assignment )expression_statement (expression_statement (assignment (identifier_basename) identifier_basename (call (attribute (attribute (identifier_os) identifier_os (identifier_path) identifier_path )attribute (identifier_basename) identifier_basename )attribute (argument_list (identifier_path) identifier_path )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_cached) identifier_cached (call (attribute (attribute (identifier_self) identifier_self (identifier_relpath_cache) identifier_relpath_cache )attribute (identifier_get) identifier_get )attribute (argument_list (identifier_dirname) identifier_dirname (identifier_empty) identifier_empty )argument_list )call )assignment )expression_statement (if_statement (comparison_operator (identifier_cached) identifier_cached (identifier_empty) identifier_empty )comparison_operator (block (expression_statement (assignment (identifier_cached) identifier_cached (assignment (subscript (attribute (identifier_self) identifier_self (identifier_relpath_cache) identifier_relpath_cache )attribute (identifier_dirname) identifier_dirname )subscript (call (attribute (attribute (identifier_os) identifier_os (identifier_path) identifier_path )attribute (identifier_relpath) identifier_relpath )attribute (argument_list (identifier_dirname) identifier_dirname (attribute (identifier_self) identifier_self (identifier_parent_dir) identifier_parent_dir )attribute )argument_list )call )assignment )assignment )expression_statement )block )if_statement (return_statement (call (attribute (attribute (identifier_os) identifier_os (identifier_path) identifier_path )attribute (identifier_join) identifier_join )attribute (argument_list (identifier_cached) identifier_cached (identifier_basename) identifier_basename )argument_list )call )return_statement )block )function_definition )module
Find the relative path from here from the parent_dir
(module (function_definition (function_name_launch_browser) function_name_launch_browser (parameters (default_parameter (identifier_attempt_launch_browser) identifier_attempt_launch_browser (True) True )default_parameter )parameters (block (expression_statement (assignment (identifier__DISPLAY_VARIABLES) identifier__DISPLAY_VARIABLES (list (string_'DISPLAY') string_'DISPLAY' (string_'WAYLAND_DISPLAY') string_'WAYLAND_DISPLAY' (string_'MIR_SOCKET') string_'MIR_SOCKET' )list )assignment )expression_statement (expression_statement (assignment (identifier__WEBBROWSER_NAMES_BLACKLIST) identifier__WEBBROWSER_NAMES_BLACKLIST (list (string_'www-browser') string_'www-browser' (string_'lynx') string_'lynx' (string_'links') string_'links' (string_'elinks') string_'elinks' (string_'w3m') string_'w3m' )list )assignment )expression_statement (import_statement (dotted_name (identifier_webbrowser) identifier_webbrowser )dotted_name )import_statement (expression_statement (assignment (identifier_launch_browser) identifier_launch_browser (identifier_attempt_launch_browser) identifier_attempt_launch_browser )assignment )expression_statement (if_statement (identifier_launch_browser) identifier_launch_browser (block (if_statement (parenthesized_expression (boolean_operator (comparison_operator (string_'linux') string_'linux' (attribute (identifier_sys) identifier_sys (identifier_platform) identifier_platform )attribute )comparison_operator (not_operator (call (identifier_any) identifier_any (generator_expression (call (attribute (identifier_os) identifier_os (identifier_getenv) identifier_getenv )attribute (argument_list (identifier_var) identifier_var )argument_list )call (for_in_clause (identifier_var) identifier_var (identifier__DISPLAY_VARIABLES) identifier__DISPLAY_VARIABLES )for_in_clause )generator_expression )call )not_operator )boolean_operator )parenthesized_expression (block (expression_statement (assignment (identifier_launch_browser) identifier_launch_browser (False) False )assignment )expression_statement )block )if_statement (try_statement (block (expression_statement (assignment (identifier_browser) identifier_browser (call (attribute (identifier_webbrowser) identifier_webbrowser (identifier_get) identifier_get )attribute (argument_list )argument_list )call )assignment )expression_statement (if_statement (parenthesized_expression (boolean_operator (call (identifier_hasattr) identifier_hasattr (argument_list (identifier_browser) identifier_browser (string_'name') string_'name' )argument_list )call (comparison_operator (attribute (identifier_browser) identifier_browser (identifier_name) identifier_name )attribute (identifier__WEBBROWSER_NAMES_BLACKLIST) identifier__WEBBROWSER_NAMES_BLACKLIST )comparison_operator )boolean_operator )parenthesized_expression (block (expression_statement (assignment (identifier_launch_browser) identifier_launch_browser (False) False )assignment )expression_statement )block )if_statement )block (except_clause (attribute (identifier_webbrowser) identifier_webbrowser (identifier_Error) identifier_Error )attribute (block (expression_statement (assignment (identifier_launch_browser) identifier_launch_browser (False) False )assignment )expression_statement )block )except_clause )try_statement )block )if_statement (return_statement (identifier_launch_browser) identifier_launch_browser )return_statement )block )function_definition )module
Decide if we should launch a browser
(module (function_definition (function_name_send_exit_with_code) function_name_send_exit_with_code (parameters (identifier_cls) identifier_cls (identifier_sock) identifier_sock (identifier_code) identifier_code )parameters (block (expression_statement (assignment (identifier_encoded_exit_status) identifier_encoded_exit_status (call (attribute (identifier_cls) identifier_cls (identifier_encode_int) identifier_encode_int )attribute (argument_list (identifier_code) identifier_code )argument_list )call )assignment )expression_statement (expression_statement (call (attribute (identifier_cls) identifier_cls (identifier_send_exit) identifier_send_exit )attribute (argument_list (identifier_sock) identifier_sock (keyword_argument (identifier_payload) identifier_payload (identifier_encoded_exit_status) identifier_encoded_exit_status )keyword_argument )argument_list )call )expression_statement )block )function_definition )module
Send an Exit chunk over the specified socket, containing the specified return code.
(module (function_definition (function_name_kinetic_law_reaction_parameters) function_name_kinetic_law_reaction_parameters (parameters (identifier_self) identifier_self )parameters (block (for_statement (identifier_parameter) identifier_parameter (call (attribute (attribute (identifier_self) identifier_self (identifier__root) identifier__root )attribute (identifier_iterfind) identifier_iterfind )attribute (argument_list (call (attribute (string_'./{}/{}/{}') string_'./{}/{}/{}' (identifier_format) identifier_format )attribute (argument_list (call (attribute (attribute (identifier_self) identifier_self (identifier__reader) identifier__reader )attribute (identifier__sbml_tag) identifier__sbml_tag )attribute (argument_list (string_'kineticLaw') string_'kineticLaw' )argument_list )call (call (attribute (attribute (identifier_self) identifier_self (identifier__reader) identifier__reader )attribute (identifier__sbml_tag) identifier__sbml_tag )attribute (argument_list (string_'listOfParameters') string_'listOfParameters' )argument_list )call (call (attribute (attribute (identifier_self) identifier_self (identifier__reader) identifier__reader )attribute (identifier__sbml_tag) identifier__sbml_tag )attribute (argument_list (string_'parameter') string_'parameter' )argument_list )call )argument_list )call )argument_list )call (block (expression_statement (assignment (identifier_param_id) identifier_param_id (call (attribute (identifier_parameter) identifier_parameter (identifier_get) identifier_get )attribute (argument_list (string_'id') string_'id' )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_param_name) identifier_param_name (call (attribute (identifier_parameter) identifier_parameter (identifier_get) identifier_get )attribute (argument_list (string_'name') string_'name' )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_param_value) identifier_param_value (call (identifier_Decimal) identifier_Decimal (argument_list (call (attribute (identifier_parameter) identifier_parameter (identifier_get) identifier_get )attribute (argument_list (string_'value') string_'value' )argument_list )call )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_param_units) identifier_param_units (call (attribute (identifier_parameter) identifier_parameter (identifier_get) identifier_get )attribute (argument_list (string_'units') string_'units' )argument_list )call )assignment )expression_statement (expression_statement (yield (expression_list (identifier_param_id) identifier_param_id (identifier_param_name) identifier_param_name (identifier_param_value) identifier_param_value (identifier_param_units) identifier_param_units )expression_list )yield )expression_statement )block )for_statement )block )function_definition )module
Iterator over the values of kinetic law reaction parameters
(module (function_definition (function_name__get_aggregated_info) function_name__get_aggregated_info (parameters (identifier_self) identifier_self )parameters (block (expression_statement (assignment (identifier_agg_results) identifier_agg_results (dictionary )dictionary )assignment )expression_statement (for_statement (identifier_key) identifier_key (subscript (attribute (identifier_self) identifier_self (identifier_aggregated_info) identifier_aggregated_info )attribute (string_'occurrences') string_'occurrences' )subscript (block (expression_statement (assignment (subscript (identifier_agg_results) identifier_agg_results (identifier_key) identifier_key )subscript (dictionary (pair (string_'occurrences') string_'occurrences' (call (attribute (subscript (attribute (identifier_self) identifier_self (identifier_aggregated_info) identifier_aggregated_info )attribute (string_'occurrences') string_'occurrences' )subscript (identifier_get) identifier_get )attribute (argument_list (identifier_key) identifier_key )argument_list )call )pair (pair (string_'coverage') string_'coverage' (binary_operator (parenthesized_expression (binary_operator (call (identifier_float) identifier_float (argument_list (call (attribute (subscript (attribute (identifier_self) identifier_self (identifier_aggregated_info) identifier_aggregated_info )attribute (string_'occurrences') string_'occurrences' )subscript (identifier_get) identifier_get )attribute (argument_list (identifier_key) identifier_key )argument_list )call )argument_list )call (call (identifier_float) identifier_float (argument_list (call (attribute (identifier_self) identifier_self (identifier_get_metadata) identifier_get_metadata )attribute (argument_list (string_'items_count') string_'items_count' )argument_list )call )argument_list )call )binary_operator )parenthesized_expression (integer_100) integer_100 )binary_operator )pair )dictionary )assignment )expression_statement )block )for_statement (return_statement (identifier_agg_results) identifier_agg_results )return_statement )block )function_definition )module
Keeps track of aggregated info in a dictionary called self.aggregated_info
(module (function_definition (function_name_determine_metadata) function_name_determine_metadata (parameters (identifier_self) identifier_self (identifier_request) identifier_request (identifier_view) identifier_view )parameters (block (expression_statement (assignment (identifier_metadata) identifier_metadata (call (attribute (call (identifier_super) identifier_super (argument_list (identifier_DynamicMetadata) identifier_DynamicMetadata (identifier_self) identifier_self )argument_list )call (identifier_determine_metadata) identifier_determine_metadata )attribute (argument_list (identifier_request) identifier_request (identifier_view) identifier_view )argument_list )call )assignment )expression_statement (expression_statement (assignment (subscript (identifier_metadata) identifier_metadata (string_'features') string_'features' )subscript (call (identifier_getattr) identifier_getattr (argument_list (identifier_view) identifier_view (string_'features') string_'features' (list )list )argument_list )call )assignment )expression_statement (if_statement (call (identifier_hasattr) identifier_hasattr (argument_list (identifier_view) identifier_view (string_'get_serializer') string_'get_serializer' )argument_list )call (block (expression_statement (assignment (identifier_serializer) identifier_serializer (call (attribute (identifier_view) identifier_view (identifier_get_serializer) identifier_get_serializer )attribute (argument_list (keyword_argument (identifier_dynamic) identifier_dynamic (False) False )keyword_argument )argument_list )call )assignment )expression_statement (if_statement (call (identifier_hasattr) identifier_hasattr (argument_list (identifier_serializer) identifier_serializer (string_'get_name') string_'get_name' )argument_list )call (block (expression_statement (assignment (subscript (identifier_metadata) identifier_metadata (string_'resource_name') string_'resource_name' )subscript (call (attribute (identifier_serializer) identifier_serializer (identifier_get_name) identifier_get_name )attribute (argument_list )argument_list )call )assignment )expression_statement )block )if_statement (if_statement (call (identifier_hasattr) identifier_hasattr (argument_list (identifier_serializer) identifier_serializer (string_'get_plural_name') string_'get_plural_name' )argument_list )call (block (expression_statement (assignment (subscript (identifier_metadata) identifier_metadata (string_'resource_name_plural') string_'resource_name_plural' )subscript (call (attribute (identifier_serializer) identifier_serializer (identifier_get_plural_name) identifier_get_plural_name )attribute (argument_list )argument_list )call )assignment )expression_statement )block )if_statement )block )if_statement (expression_statement (assignment (subscript (identifier_metadata) identifier_metadata (string_'properties') string_'properties' )subscript (call (attribute (identifier_self) identifier_self (identifier_get_serializer_info) identifier_get_serializer_info )attribute (argument_list (identifier_serializer) identifier_serializer )argument_list )call )assignment )expression_statement (return_statement (identifier_metadata) identifier_metadata )return_statement )block )function_definition )module
Adds `properties` and `features` to the metadata response.
(module (function_definition (function_name_fix_pickle) function_name_fix_pickle (parameters (identifier_self) identifier_self )parameters (block (import_from_statement (dotted_name (identifier_coconut) identifier_coconut )dotted_name (dotted_name (identifier___coconut__) identifier___coconut__ )dotted_name )import_from_statement (for_statement (identifier_var) identifier_var (attribute (identifier_self) identifier_self (identifier_vars) identifier_vars )attribute (block (if_statement (boolean_operator (not_operator (call (attribute (identifier_var) identifier_var (identifier_startswith) identifier_startswith )attribute (argument_list (string_"__") string_"__" )argument_list )call )not_operator (comparison_operator (identifier_var) identifier_var (call (identifier_dir) identifier_dir (argument_list (identifier___coconut__) identifier___coconut__ )argument_list )call )comparison_operator )boolean_operator (block (expression_statement (assignment (subscript (attribute (identifier_self) identifier_self (identifier_vars) identifier_vars )attribute (identifier_var) identifier_var )subscript (call (identifier_getattr) identifier_getattr (argument_list (identifier___coconut__) identifier___coconut__ (identifier_var) identifier_var )argument_list )call )assignment )expression_statement )block )if_statement )block )for_statement )block )function_definition )module
Fix pickling of Coconut header objects.
(module (function_definition (function_name__tcpdump_callback) function_name__tcpdump_callback (parameters (identifier_self) identifier_self (identifier_line) identifier_line (identifier_kill_switch) identifier_kill_switch )parameters (block (expression_statement (assignment (identifier_line) identifier_line (call (attribute (identifier_line) identifier_line (identifier_lower) identifier_lower )attribute (argument_list )argument_list )call )assignment )expression_statement (if_statement (boolean_operator (parenthesized_expression (comparison_operator (string_"listening") string_"listening" (identifier_line) identifier_line )comparison_operator )parenthesized_expression (parenthesized_expression (comparison_operator (string_"reading") string_"reading" (identifier_line) identifier_line )comparison_operator )parenthesized_expression )boolean_operator (block (expression_statement (assignment (attribute (identifier_self) identifier_self (identifier_started) identifier_started )attribute (True) True )assignment )expression_statement )block )if_statement (if_statement (parenthesized_expression (comparison_operator (string_"no suitable device") string_"no suitable device" (identifier_line) identifier_line )comparison_operator )parenthesized_expression (block (expression_statement (assignment (attribute (identifier_self) identifier_self (identifier_error) identifier_error )attribute (True) True )assignment )expression_statement (expression_statement (call (attribute (identifier_self) identifier_self (identifier_kill_switch) identifier_kill_switch )attribute (argument_list )argument_list )call )expression_statement )block )if_statement (if_statement (comparison_operator (string_"by kernel") string_"by kernel" (identifier_line) identifier_line )comparison_operator (block (expression_statement (assignment (attribute (identifier_self) identifier_self (identifier_stopped) identifier_stopped )attribute (True) True )assignment )expression_statement )block )if_statement )block )function_definition )module
Callback function to handle tcpdump
(module (function_definition (function_name_hdate) function_name_hdate (parameters (identifier_self) identifier_self (identifier_date) identifier_date )parameters (block (if_statement (boolean_operator (comparison_operator (identifier_date) identifier_date (None) None )comparison_operator (call (identifier_isinstance) identifier_isinstance (argument_list (attribute (identifier_self) identifier_self (identifier_gdate) identifier_gdate )attribute (attribute (identifier_datetime) identifier_datetime (identifier_date) identifier_date )attribute )argument_list )call )boolean_operator (block (expression_statement (assignment (identifier_date) identifier_date (attribute (identifier_self) identifier_self (identifier_hdate) identifier_hdate )attribute )assignment )expression_statement )block )if_statement (if_statement (not_operator (call (identifier_isinstance) identifier_isinstance (argument_list (identifier_date) identifier_date (identifier_HebrewDate) identifier_HebrewDate )argument_list )call )not_operator (block (raise_statement (call (identifier_TypeError) identifier_TypeError (argument_list (call (attribute (string_'date: {} is not of type HebrewDate') string_'date: {} is not of type HebrewDate' (identifier_format) identifier_format )attribute (argument_list (identifier_date) identifier_date )argument_list )call )argument_list )call )raise_statement )block )if_statement (if_statement (not_operator (comparison_operator (integer_0) integer_0 (attribute (identifier_date) identifier_date (identifier_month) identifier_month )attribute (integer_15) integer_15 )comparison_operator )not_operator (block (raise_statement (call (identifier_ValueError) identifier_ValueError (argument_list (call (attribute (string_'month ({}) legal values are 1-14') string_'month ({}) legal values are 1-14' (identifier_format) identifier_format )attribute (argument_list (attribute (identifier_date) identifier_date (identifier_month) identifier_month )attribute )argument_list )call )argument_list )call )raise_statement )block )if_statement (if_statement (not_operator (comparison_operator (integer_0) integer_0 (attribute (identifier_date) identifier_date (identifier_day) identifier_day )attribute (integer_31) integer_31 )comparison_operator )not_operator (block (raise_statement (call (identifier_ValueError) identifier_ValueError (argument_list (call (attribute (string_'day ({}) legal values are 1-31') string_'day ({}) legal values are 1-31' (identifier_format) identifier_format )attribute (argument_list (attribute (identifier_date) identifier_date (identifier_day) identifier_day )attribute )argument_list )call )argument_list )call )raise_statement )block )if_statement (expression_statement (assignment (attribute (identifier_self) identifier_self (identifier__last_updated) identifier__last_updated )attribute (string_"hdate") string_"hdate" )assignment )expression_statement (expression_statement (assignment (attribute (identifier_self) identifier_self (identifier__hdate) identifier__hdate )attribute (identifier_date) identifier_date )assignment )expression_statement )block )function_definition )module
Set the dates of the HDate object based on a given Hebrew date.
(module (function_definition (function_name__list_selection_changed) function_name__list_selection_changed (parameters (identifier_self) identifier_self )parameters (block (expression_statement (assignment (identifier_items) identifier_items (call (attribute (attribute (identifier_self) identifier_self (identifier_list_layers_in_map_report) identifier_list_layers_in_map_report )attribute (identifier_selectedItems) identifier_selectedItems )attribute (argument_list )argument_list )call )assignment )expression_statement (expression_statement (call (attribute (attribute (identifier_self) identifier_self (identifier_remove_layer) identifier_remove_layer )attribute (identifier_setEnabled) identifier_setEnabled )attribute (argument_list (comparison_operator (call (identifier_len) identifier_len (argument_list (identifier_items) identifier_items )argument_list )call (integer_1) integer_1 )comparison_operator )argument_list )call )expression_statement (if_statement (boolean_operator (comparison_operator (call (identifier_len) identifier_len (argument_list (identifier_items) identifier_items )argument_list )call (integer_1) integer_1 )comparison_operator (comparison_operator (call (attribute (attribute (identifier_self) identifier_self (identifier_list_layers_in_map_report) identifier_list_layers_in_map_report )attribute (identifier_count) identifier_count )attribute (argument_list )argument_list )call (integer_2) integer_2 )comparison_operator )boolean_operator (block (expression_statement (assignment (identifier_index) identifier_index (call (attribute (attribute (identifier_self) identifier_self (identifier_list_layers_in_map_report) identifier_list_layers_in_map_report )attribute (identifier_indexFromItem) identifier_indexFromItem )attribute (argument_list (subscript (identifier_items) identifier_items (integer_0) integer_0 )subscript )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_index) identifier_index (call (attribute (identifier_index) identifier_index (identifier_row) identifier_row )attribute (argument_list )argument_list )call )assignment )expression_statement (if_statement (comparison_operator (identifier_index) identifier_index (integer_0) integer_0 )comparison_operator (block (expression_statement (call (attribute (attribute (identifier_self) identifier_self (identifier_move_up) identifier_move_up )attribute (identifier_setEnabled) identifier_setEnabled )attribute (argument_list (False) False )argument_list )call )expression_statement (expression_statement (call (attribute (attribute (identifier_self) identifier_self (identifier_move_down) identifier_move_down )attribute (identifier_setEnabled) identifier_setEnabled )attribute (argument_list (True) True )argument_list )call )expression_statement )block (elif_clause (comparison_operator (identifier_index) identifier_index (binary_operator (call (attribute (attribute (identifier_self) identifier_self (identifier_list_layers_in_map_report) identifier_list_layers_in_map_report )attribute (identifier_count) identifier_count )attribute (argument_list )argument_list )call (integer_1) integer_1 )binary_operator )comparison_operator (block (expression_statement (call (attribute (attribute (identifier_self) identifier_self (identifier_move_up) identifier_move_up )attribute (identifier_setEnabled) identifier_setEnabled )attribute (argument_list (True) True )argument_list )call )expression_statement (expression_statement (call (attribute (attribute (identifier_self) identifier_self (identifier_move_down) identifier_move_down )attribute (identifier_setEnabled) identifier_setEnabled )attribute (argument_list (False) False )argument_list )call )expression_statement )block )elif_clause (else_clause (block (expression_statement (call (attribute (attribute (identifier_self) identifier_self (identifier_move_up) identifier_move_up )attribute (identifier_setEnabled) identifier_setEnabled )attribute (argument_list (True) True )argument_list )call )expression_statement (expression_statement (call (attribute (attribute (identifier_self) identifier_self (identifier_move_down) identifier_move_down )attribute (identifier_setEnabled) identifier_setEnabled )attribute (argument_list (True) True )argument_list )call )expression_statement )block )else_clause )if_statement )block (else_clause (block (expression_statement (call (attribute (attribute (identifier_self) identifier_self (identifier_move_up) identifier_move_up )attribute (identifier_setEnabled) identifier_setEnabled )attribute (argument_list (False) False )argument_list )call )expression_statement (expression_statement (call (attribute (attribute (identifier_self) identifier_self (identifier_move_down) identifier_move_down )attribute (identifier_setEnabled) identifier_setEnabled )attribute (argument_list (False) False )argument_list )call )expression_statement )block )else_clause )if_statement )block )function_definition )module
Selection has changed in the list.
(module (function_definition (function_name_tweet) function_name_tweet (parameters (identifier_ctx) identifier_ctx (identifier_message) identifier_message )parameters (block (if_statement (not_operator (call (identifier_valid_tweet) identifier_valid_tweet (argument_list (identifier_message) identifier_message )argument_list )call )not_operator (block (expression_statement (call (attribute (identifier_click) identifier_click (identifier_echo) identifier_echo )attribute (argument_list (string_"Message is too long for twitter.") string_"Message is too long for twitter." )argument_list )call )expression_statement (expression_statement (call (attribute (identifier_click) identifier_click (identifier_echo) identifier_echo )attribute (argument_list (binary_operator (string_"Message:") string_"Message:" (identifier_message) identifier_message )binary_operator )argument_list )call )expression_statement (expression_statement (call (attribute (identifier_ctx) identifier_ctx (identifier_exit) identifier_exit )attribute (argument_list (integer_2) integer_2 )argument_list )call )expression_statement )block )if_statement (if_statement (not_operator (subscript (attribute (identifier_ctx) identifier_ctx (identifier_obj) identifier_obj )attribute (string_'DRYRUN') string_'DRYRUN' )subscript )not_operator (block (expression_statement (call (attribute (subscript (attribute (identifier_ctx) identifier_ctx (identifier_obj) identifier_obj )attribute (string_'TWEEPY_API') string_'TWEEPY_API' )subscript (identifier_update_status) identifier_update_status )attribute (argument_list (identifier_message) identifier_message )argument_list )call )expression_statement )block (else_clause (block (expression_statement (call (attribute (identifier_click) identifier_click (identifier_echo) identifier_echo )attribute (argument_list (string_"Tweet not sent due to dry-run mode.") string_"Tweet not sent due to dry-run mode." )argument_list )call )expression_statement )block )else_clause )if_statement )block )function_definition )module
Sends a tweet directly to your timeline
(module (function_definition (function_name_name_from_type) function_name_name_from_type (parameters (identifier_type_) identifier_type_ )parameters (block (if_statement (call (identifier_isinstance) identifier_isinstance (argument_list (identifier_type_) identifier_type_ (tuple (identifier_DictType) identifier_DictType (identifier_ListType) identifier_ListType (identifier_TupleType) identifier_TupleType (identifier_SetType) identifier_SetType (identifier_IteratorType) identifier_IteratorType )tuple )argument_list )call (block (return_statement (call (identifier_repr) identifier_repr (argument_list (identifier_type_) identifier_type_ )argument_list )call )return_statement )block (else_clause (block (if_statement (comparison_operator (attribute (identifier_type_) identifier_type_ (identifier___name__) identifier___name__ )attribute (string_'NoneType') string_'NoneType' )comparison_operator (block (expression_statement (assignment (identifier_module) identifier_module (attribute (identifier_type_) identifier_type_ (identifier___module__) identifier___module__ )attribute )assignment )expression_statement (if_statement (boolean_operator (comparison_operator (identifier_module) identifier_module (identifier_BUILTIN_MODULES) identifier_BUILTIN_MODULES )comparison_operator (comparison_operator (identifier_module) identifier_module (string_'<unknown>') string_'<unknown>' )comparison_operator )boolean_operator (block (return_statement (attribute (identifier_type_) identifier_type_ (identifier___name__) identifier___name__ )attribute )return_statement )block (else_clause (block (expression_statement (assignment (identifier_name) identifier_name (boolean_operator (call (identifier_getattr) identifier_getattr (argument_list (identifier_type_) identifier_type_ (string_'__qualname__') string_'__qualname__' (None) None )argument_list )call (attribute (identifier_type_) identifier_type_ (identifier___name__) identifier___name__ )attribute )boolean_operator )assignment )expression_statement (expression_statement (assignment (identifier_delim) identifier_delim (conditional_expression (string_'.') string_'.' (comparison_operator (string_'.') string_'.' (identifier_name) identifier_name )comparison_operator (string_':') string_':' )conditional_expression )assignment )expression_statement (return_statement (binary_operator (string_'%s%s%s') string_'%s%s%s' (tuple (identifier_module) identifier_module (identifier_delim) identifier_delim (identifier_name) identifier_name )tuple )binary_operator )return_statement )block )else_clause )if_statement )block (else_clause (block (return_statement (string_'None') string_'None' )return_statement )block )else_clause )if_statement )block )else_clause )if_statement )block )function_definition )module
Helper function to get PEP-484 compatible string representation of our internal types.
(module (function_definition (function_name_aug_sysargv) function_name_aug_sysargv (parameters (identifier_cmdstr) identifier_cmdstr )parameters (block (import_statement (dotted_name (identifier_shlex) identifier_shlex )dotted_name )import_statement (expression_statement (assignment (identifier_argv) identifier_argv (call (attribute (identifier_shlex) identifier_shlex (identifier_split) identifier_split )attribute (argument_list (identifier_cmdstr) identifier_cmdstr )argument_list )call )assignment )expression_statement (expression_statement (call (attribute (attribute (identifier_sys) identifier_sys (identifier_argv) identifier_argv )attribute (identifier_extend) identifier_extend )attribute (argument_list (identifier_argv) identifier_argv )argument_list )call )expression_statement )block )function_definition )module
DEBUG FUNC modify argv to look like you ran a command
(module (function_definition (function_name_are_all_nodes_discovered) function_name_are_all_nodes_discovered (parameters (identifier_self) identifier_self )parameters (block (expression_statement (assignment (identifier_undiscovered) identifier_undiscovered (call (attribute (identifier_self) identifier_self (identifier_find_all) identifier_find_all )attribute (argument_list (lambda (lambda_parameters (identifier_e) identifier_e )lambda_parameters (not_operator (attribute (identifier_e) identifier_e (identifier_discovered) identifier_discovered )attribute )not_operator )lambda )argument_list )call )assignment )expression_statement (return_statement (comparison_operator (call (identifier_len) identifier_len (argument_list (call (identifier_list) identifier_list (argument_list (identifier_undiscovered) identifier_undiscovered )argument_list )call )argument_list )call (integer_0) integer_0 )comparison_operator )return_statement )block )function_definition )module
Reports whether there are nodes whose node info is still unknown.
(module (function_definition (function_name__build_relations_config) function_name__build_relations_config (parameters (identifier_self) identifier_self (identifier_yamlconfig) identifier_yamlconfig )parameters (block (expression_statement (assignment (identifier_config) identifier_config (dictionary )dictionary )assignment )expression_statement (for_statement (identifier_element) identifier_element (identifier_yamlconfig) identifier_yamlconfig (block (if_statement (call (identifier_isinstance) identifier_isinstance (argument_list (identifier_element) identifier_element (identifier_str) identifier_str )argument_list )call (block (expression_statement (assignment (subscript (identifier_config) identifier_config (identifier_element) identifier_element )subscript (dictionary (pair (string_'relation_name') string_'relation_name' (identifier_element) identifier_element )pair (pair (string_'schemas') string_'schemas' (list )list )pair )dictionary )assignment )expression_statement )block (elif_clause (call (identifier_isinstance) identifier_isinstance (argument_list (identifier_element) identifier_element (identifier_dict) identifier_dict )argument_list )call (block (if_statement (boolean_operator (comparison_operator (string_'relation_name') string_'relation_name' (identifier_element) identifier_element )comparison_operator (comparison_operator (string_'schemas') string_'schemas' (identifier_element) identifier_element )comparison_operator )boolean_operator (block (expression_statement (call (attribute (attribute (identifier_self) identifier_self (identifier_log) identifier_log )attribute (identifier_warning) identifier_warning )attribute (argument_list (string_"Unknown element format for relation element %s") string_"Unknown element format for relation element %s" (identifier_element) identifier_element )argument_list )call )expression_statement (continue_statement )continue_statement )block )if_statement (if_statement (not_operator (call (identifier_isinstance) identifier_isinstance (argument_list (subscript (identifier_element) identifier_element (string_'schemas') string_'schemas' )subscript (identifier_list) identifier_list )argument_list )call )not_operator (block (expression_statement (call (attribute (attribute (identifier_self) identifier_self (identifier_log) identifier_log )attribute (identifier_warning) identifier_warning )attribute (argument_list (string_"Expected a list of schemas for %s") string_"Expected a list of schemas for %s" (identifier_element) identifier_element )argument_list )call )expression_statement (continue_statement )continue_statement )block )if_statement (expression_statement (assignment (identifier_name) identifier_name (subscript (identifier_element) identifier_element (string_'relation_name') string_'relation_name' )subscript )assignment )expression_statement (expression_statement (assignment (subscript (identifier_config) identifier_config (identifier_name) identifier_name )subscript (dictionary (pair (string_'relation_name') string_'relation_name' (identifier_name) identifier_name )pair (pair (string_'schemas') string_'schemas' (subscript (identifier_element) identifier_element (string_'schemas') string_'schemas' )subscript )pair )dictionary )assignment )expression_statement )block )elif_clause (else_clause (block (expression_statement (call (attribute (attribute (identifier_self) identifier_self (identifier_log) identifier_log )attribute (identifier_warning) identifier_warning )attribute (argument_list (call (attribute (string_'Unhandled relations config type: {}') string_'Unhandled relations config type: {}' (identifier_format) identifier_format )attribute (argument_list (identifier_element) identifier_element )argument_list )call )argument_list )call )expression_statement )block )else_clause )if_statement )block )for_statement (return_statement (identifier_config) identifier_config )return_statement )block )function_definition )module
Builds a dictionary from relations configuration while maintaining compatibility
(module (function_definition (function_name_section_term_branch_orders) function_name_section_term_branch_orders (parameters (identifier_neurites) identifier_neurites (default_parameter (identifier_neurite_type) identifier_neurite_type (attribute (identifier_NeuriteType) identifier_NeuriteType (identifier_all) identifier_all )attribute )default_parameter )parameters (block (return_statement (call (identifier_map_sections) identifier_map_sections (argument_list (attribute (identifier_sectionfunc) identifier_sectionfunc (identifier_branch_order) identifier_branch_order )attribute (identifier_neurites) identifier_neurites (keyword_argument (identifier_neurite_type) identifier_neurite_type (identifier_neurite_type) identifier_neurite_type )keyword_argument (keyword_argument (identifier_iterator_type) identifier_iterator_type (attribute (identifier_Tree) identifier_Tree (identifier_ileaf) identifier_ileaf )attribute )keyword_argument )argument_list )call )return_statement )block )function_definition )module
Termination section branch orders in a collection of neurites
(module (function_definition (function_name__parse_state_file) function_name__parse_state_file (parameters (default_parameter (identifier_state_file_path) identifier_state_file_path (string_'terraform.tfstate') string_'terraform.tfstate' )default_parameter )parameters (block (expression_statement (assignment (identifier_ret) identifier_ret (dictionary )dictionary )assignment )expression_statement (with_statement (with_clause (with_item (as_pattern (call (attribute (attribute (attribute (identifier_salt) identifier_salt (identifier_utils) identifier_utils )attribute (identifier_files) identifier_files )attribute (identifier_fopen) identifier_fopen )attribute (argument_list (identifier_state_file_path) identifier_state_file_path (string_'r') string_'r' )argument_list )call (as_pattern_target (identifier_fh_) identifier_fh_ )as_pattern_target )as_pattern )with_item )with_clause (block (expression_statement (assignment (identifier_tfstate) identifier_tfstate (call (attribute (attribute (attribute (identifier_salt) identifier_salt (identifier_utils) identifier_utils )attribute (identifier_json) identifier_json )attribute (identifier_load) identifier_load )attribute (argument_list (identifier_fh_) identifier_fh_ )argument_list )call )assignment )expression_statement )block )with_statement (expression_statement (assignment (identifier_modules) identifier_modules (call (attribute (identifier_tfstate) identifier_tfstate (identifier_get) identifier_get )attribute (argument_list (string_'modules') string_'modules' )argument_list )call )assignment )expression_statement (if_statement (not_operator (identifier_modules) identifier_modules )not_operator (block (expression_statement (call (attribute (identifier_log) identifier_log (identifier_error) identifier_error )attribute (argument_list (string_'Malformed tfstate file. No modules found') string_'Malformed tfstate file. No modules found' )argument_list )call )expression_statement (return_statement (identifier_ret) identifier_ret )return_statement )block )if_statement (for_statement (identifier_module) identifier_module (identifier_modules) identifier_modules (block (expression_statement (assignment (identifier_resources) identifier_resources (call (attribute (identifier_module) identifier_module (identifier_get) identifier_get )attribute (argument_list (string_'resources') string_'resources' (list )list )argument_list )call )assignment )expression_statement (for_statement (pattern_list (identifier_resource_name) identifier_resource_name (identifier_resource) identifier_resource )pattern_list (call (attribute (attribute (attribute (identifier_salt) identifier_salt (identifier_ext) identifier_ext )attribute (identifier_six) identifier_six )attribute (identifier_iteritems) identifier_iteritems )attribute (argument_list (identifier_resources) identifier_resources )argument_list )call (block (expression_statement (assignment (identifier_roster_entry) identifier_roster_entry (None) None )assignment )expression_statement (if_statement (comparison_operator (subscript (identifier_resource) identifier_resource (string_'type') string_'type' )subscript (string_'salt_host') string_'salt_host' )comparison_operator (block (expression_statement (assignment (identifier_roster_entry) identifier_roster_entry (call (identifier__handle_salt_host_resource) identifier__handle_salt_host_resource (argument_list (identifier_resource) identifier_resource )argument_list )call )assignment )expression_statement )block )if_statement (if_statement (not_operator (identifier_roster_entry) identifier_roster_entry )not_operator (block (continue_statement )continue_statement )block )if_statement (expression_statement (assignment (identifier_minion_id) identifier_minion_id (call (attribute (identifier_roster_entry) identifier_roster_entry (identifier_get) identifier_get )attribute (argument_list (identifier_MINION_ID) identifier_MINION_ID (call (attribute (identifier_resource) identifier_resource (identifier_get) identifier_get )attribute (argument_list (string_'id') string_'id' )argument_list )call )argument_list )call )assignment )expression_statement (if_statement (not_operator (identifier_minion_id) identifier_minion_id )not_operator (block (continue_statement )continue_statement )block )if_statement (if_statement (comparison_operator (identifier_MINION_ID) identifier_MINION_ID (identifier_roster_entry) identifier_roster_entry )comparison_operator (block (delete_statement (subscript (identifier_roster_entry) identifier_roster_entry (identifier_MINION_ID) identifier_MINION_ID )subscript )delete_statement )block )if_statement (expression_statement (call (identifier__add_ssh_key) identifier__add_ssh_key (argument_list (identifier_roster_entry) identifier_roster_entry )argument_list )call )expression_statement (expression_statement (assignment (subscript (identifier_ret) identifier_ret (identifier_minion_id) identifier_minion_id )subscript (identifier_roster_entry) identifier_roster_entry )assignment )expression_statement )block )for_statement )block )for_statement (return_statement (identifier_ret) identifier_ret )return_statement )block )function_definition )module
Parses the terraform state file passing different resource types to the right handler
(module (function_definition (function_name__covar_mstep_spherical) function_name__covar_mstep_spherical (parameters (list_splat_pattern (identifier_args) identifier_args )list_splat_pattern )parameters (block (expression_statement (assignment (identifier_cv) identifier_cv (call (identifier__covar_mstep_diag) identifier__covar_mstep_diag (argument_list (list_splat (identifier_args) identifier_args )list_splat )argument_list )call )assignment )expression_statement (return_statement (call (attribute (identifier_np) identifier_np (identifier_tile) identifier_tile )attribute (argument_list (subscript (call (attribute (identifier_cv) identifier_cv (identifier_mean) identifier_mean )attribute (argument_list (keyword_argument (identifier_axis) identifier_axis (integer_1) integer_1 )keyword_argument )argument_list )call (slice (colon) colon )slice (attribute (identifier_np) identifier_np (identifier_newaxis) identifier_newaxis )attribute )subscript (tuple (integer_1) integer_1 (subscript (attribute (identifier_cv) identifier_cv (identifier_shape) identifier_shape )attribute (integer_1) integer_1 )subscript )tuple )argument_list )call )return_statement )block )function_definition )module
Performing the covariance M step for spherical cases
(module (function_definition (function_name_thishost) function_name_thishost (parameters )parameters (block (global_statement (identifier__thishost) identifier__thishost )global_statement (if_statement (comparison_operator (identifier__thishost) identifier__thishost (None) None )comparison_operator (block (try_statement (block (expression_statement (assignment (identifier__thishost) identifier__thishost (call (identifier_tuple) identifier_tuple (argument_list (subscript (call (attribute (identifier_socket) identifier_socket (identifier_gethostbyname_ex) identifier_gethostbyname_ex )attribute (argument_list (call (attribute (identifier_socket) identifier_socket (identifier_gethostname) identifier_gethostname )attribute (argument_list )argument_list )call )argument_list )call (integer_2) integer_2 )subscript )argument_list )call )assignment )expression_statement )block (except_clause (attribute (identifier_socket) identifier_socket (identifier_gaierror) identifier_gaierror )attribute (block (expression_statement (assignment (identifier__thishost) identifier__thishost (call (identifier_tuple) identifier_tuple (argument_list (subscript (call (attribute (identifier_socket) identifier_socket (identifier_gethostbyname_ex) identifier_gethostbyname_ex )attribute (argument_list (string_'localhost') string_'localhost' )argument_list )call (integer_2) integer_2 )subscript )argument_list )call )assignment )expression_statement )block )except_clause )try_statement )block )if_statement (return_statement (identifier__thishost) identifier__thishost )return_statement )block )function_definition )module
Return the IP addresses of the current host.
(module (function_definition (function_name_create) function_name_create (parameters (identifier_cls) identifier_cls (default_parameter (identifier_service) identifier_service (call (identifier_Service) identifier_Service (argument_list )argument_list )call )default_parameter (default_parameter (identifier_private) identifier_private (False) False )default_parameter )parameters (block (expression_statement (assignment (identifier_response) identifier_response (call (attribute (identifier_service) identifier_service (identifier_send) identifier_send )attribute (argument_list (call (identifier_SRequest) identifier_SRequest (argument_list (string_'POST') string_'POST' (attribute (identifier_cls) identifier_cls (identifier_path) identifier_path )attribute (keyword_argument (identifier_data) identifier_data (dictionary (pair (string_'private') string_'private' (identifier_private) identifier_private )pair )dictionary )keyword_argument )argument_list )call )argument_list )call )assignment )expression_statement (return_statement (call (attribute (identifier_cls) identifier_cls (identifier_from_response) identifier_from_response )attribute (argument_list (identifier_response) identifier_response (keyword_argument (identifier_service) identifier_service (identifier_service) identifier_service )keyword_argument )argument_list )call )return_statement )block )function_definition )module
create a bin instance on the server
(module (function_definition (function_name_all_unique) function_name_all_unique (parameters (identifier_keys) identifier_keys (default_parameter (identifier_axis) identifier_axis (attribute (identifier_semantics) identifier_semantics (identifier_axis_default) identifier_axis_default )attribute )default_parameter )parameters (block (expression_statement (assignment (identifier_index) identifier_index (call (identifier_as_index) identifier_as_index (argument_list (identifier_keys) identifier_keys (identifier_axis) identifier_axis )argument_list )call )assignment )expression_statement (return_statement (comparison_operator (attribute (identifier_index) identifier_index (identifier_groups) identifier_groups )attribute (attribute (identifier_index) identifier_index (identifier_size) identifier_size )attribute )comparison_operator )return_statement )block )function_definition )module
Returns true if all keys are unique
(module (function_definition (function_name_show_firewall) function_name_show_firewall (parameters (identifier_self) identifier_self (identifier_firewall) identifier_firewall (dictionary_splat_pattern (identifier__params) identifier__params )dictionary_splat_pattern )parameters (block (return_statement (call (attribute (identifier_self) identifier_self (identifier_get) identifier_get )attribute (argument_list (binary_operator (attribute (identifier_self) identifier_self (identifier_firewall_path) identifier_firewall_path )attribute (parenthesized_expression (identifier_firewall) identifier_firewall )parenthesized_expression )binary_operator (keyword_argument (identifier_params) identifier_params (identifier__params) identifier__params )keyword_argument )argument_list )call )return_statement )block )function_definition )module
Fetches information of a certain firewall.
(module (function_definition (function_name__connectionEstablished) function_name__connectionEstablished (parameters (identifier_self) identifier_self (identifier_transport) identifier_transport )parameters (block (expression_statement (assignment (attribute (identifier_self) identifier_self (identifier_transport) identifier_transport )attribute (identifier_transport) identifier_transport )assignment )expression_statement (expression_statement (call (attribute (attribute (identifier_self) identifier_self (identifier_transport) identifier_transport )attribute (identifier_writeOpen) identifier_writeOpen )attribute (argument_list )argument_list )call )expression_statement (expression_statement (call (attribute (attribute (identifier_self) identifier_self (identifier_heartbeater) identifier_heartbeater )attribute (identifier_schedule) identifier_schedule )attribute (argument_list )argument_list )call )expression_statement )block )function_definition )module
Store a reference to our transport and write an open frame.
(module (function_definition (function_name_to_bucket) function_name_to_bucket (parameters (identifier_self) identifier_self (identifier_timestamp) identifier_timestamp (default_parameter (identifier_steps) identifier_steps (integer_0) integer_0 )default_parameter )parameters (block (expression_statement (assignment (identifier_dt) identifier_dt (call (attribute (identifier_datetime) identifier_datetime (identifier_utcfromtimestamp) identifier_utcfromtimestamp )attribute (argument_list (identifier_timestamp) identifier_timestamp )argument_list )call )assignment )expression_statement (if_statement (comparison_operator (identifier_steps) identifier_steps (integer_0) integer_0 )comparison_operator (block (if_statement (comparison_operator (attribute (identifier_self) identifier_self (identifier__step) identifier__step )attribute (string_'daily') string_'daily' )comparison_operator (block (expression_statement (assignment (identifier_dt) identifier_dt (binary_operator (identifier_dt) identifier_dt (call (identifier_timedelta) identifier_timedelta (argument_list (keyword_argument (identifier_days) identifier_days (identifier_steps) identifier_steps )keyword_argument )argument_list )call )binary_operator )assignment )expression_statement )block (elif_clause (comparison_operator (attribute (identifier_self) identifier_self (identifier__step) identifier__step )attribute (string_'weekly') string_'weekly' )comparison_operator (block (expression_statement (assignment (identifier_dt) identifier_dt (binary_operator (identifier_dt) identifier_dt (call (identifier_timedelta) identifier_timedelta (argument_list (keyword_argument (identifier_weeks) identifier_weeks (identifier_steps) identifier_steps )keyword_argument )argument_list )call )binary_operator )assignment )expression_statement )block )elif_clause (elif_clause (comparison_operator (attribute (identifier_self) identifier_self (identifier__step) identifier__step )attribute (string_'monthly') string_'monthly' )comparison_operator (block (expression_statement (assignment (identifier_dt) identifier_dt (binary_operator (identifier_dt) identifier_dt (call (identifier_MonthDelta) identifier_MonthDelta (argument_list (identifier_steps) identifier_steps )argument_list )call )binary_operator )assignment )expression_statement )block )elif_clause (elif_clause (comparison_operator (attribute (identifier_self) identifier_self (identifier__step) identifier__step )attribute (string_'yearly') string_'yearly' )comparison_operator (block (expression_statement (assignment (identifier_year) identifier_year (call (identifier_int) identifier_int (argument_list (call (attribute (identifier_dt) identifier_dt (identifier_strftime) identifier_strftime )attribute (argument_list (subscript (attribute (identifier_self) identifier_self (identifier_FORMATS) identifier_FORMATS )attribute (attribute (identifier_self) identifier_self (identifier__step) identifier__step )attribute )subscript )argument_list )call )argument_list )call )assignment )expression_statement (expression_statement (augmented_assignment (identifier_year) identifier_year (identifier_steps) identifier_steps )augmented_assignment )expression_statement (expression_statement (assignment (identifier_dt) identifier_dt (call (identifier_datetime) identifier_datetime (argument_list (keyword_argument (identifier_year) identifier_year (identifier_year) identifier_year )keyword_argument (keyword_argument (identifier_month) identifier_month (integer_1) integer_1 )keyword_argument (keyword_argument (identifier_day) identifier_day (integer_1) integer_1 )keyword_argument )argument_list )call )assignment )expression_statement )block )elif_clause )if_statement )block )if_statement (return_statement (call (identifier_int) identifier_int (argument_list (call (attribute (identifier_dt) identifier_dt (identifier_strftime) identifier_strftime )attribute (argument_list (subscript (attribute (identifier_self) identifier_self (identifier_FORMATS) identifier_FORMATS )attribute (attribute (identifier_self) identifier_self (identifier__step) identifier__step )attribute )subscript )argument_list )call )argument_list )call )return_statement )block )function_definition )module
Calculate the bucket from a timestamp.
(module (function_definition (function_name_whoami) function_name_whoami (parameters (identifier_ctx) identifier_ctx (identifier_opts) identifier_opts )parameters (block (expression_statement (call (attribute (identifier_click) identifier_click (identifier_echo) identifier_echo )attribute (argument_list (string_"Retrieving your authentication status from the API ... ") string_"Retrieving your authentication status from the API ... " (keyword_argument (identifier_nl) identifier_nl (False) False )keyword_argument )argument_list )call )expression_statement (expression_statement (assignment (identifier_context_msg) identifier_context_msg (string_"Failed to retrieve your authentication status!") string_"Failed to retrieve your authentication status!" )assignment )expression_statement (with_statement (with_clause (with_item (call (identifier_handle_api_exceptions) identifier_handle_api_exceptions (argument_list (identifier_ctx) identifier_ctx (keyword_argument (identifier_opts) identifier_opts (identifier_opts) identifier_opts )keyword_argument (keyword_argument (identifier_context_msg) identifier_context_msg (identifier_context_msg) identifier_context_msg )keyword_argument )argument_list )call )with_item )with_clause (block (with_statement (with_clause (with_item (call (identifier_maybe_spinner) identifier_maybe_spinner (argument_list (identifier_opts) identifier_opts )argument_list )call )with_item )with_clause (block (expression_statement (assignment (pattern_list (identifier_is_auth) identifier_is_auth (identifier_username) identifier_username (identifier_email) identifier_email (identifier_name) identifier_name )pattern_list (call (identifier_get_user_brief) identifier_get_user_brief (argument_list )argument_list )call )assignment )expression_statement )block )with_statement )block )with_statement (expression_statement (call (attribute (identifier_click) identifier_click (identifier_secho) identifier_secho )attribute (argument_list (string_"OK") string_"OK" (keyword_argument (identifier_fg) identifier_fg (string_"green") string_"green" )keyword_argument )argument_list )call )expression_statement (expression_statement (call (attribute (identifier_click) identifier_click (identifier_echo) identifier_echo )attribute (argument_list (string_"You are authenticated as:") string_"You are authenticated as:" )argument_list )call )expression_statement (if_statement (not_operator (identifier_is_auth) identifier_is_auth )not_operator (block (expression_statement (call (attribute (identifier_click) identifier_click (identifier_secho) identifier_secho )attribute (argument_list (string_"Nobody (i.e. anonymous user)") string_"Nobody (i.e. anonymous user)" (keyword_argument (identifier_fg) identifier_fg (string_"yellow") string_"yellow" )keyword_argument )argument_list )call )expression_statement )block (else_clause (block (expression_statement (call (attribute (identifier_click) identifier_click (identifier_secho) identifier_secho )attribute (argument_list (binary_operator (string_"%(name)s (slug: %(username)s, email: %(email)s)") string_"%(name)s (slug: %(username)s, email: %(email)s)" (dictionary (pair (string_"name") string_"name" (call (attribute (identifier_click) identifier_click (identifier_style) identifier_style )attribute (argument_list (identifier_name) identifier_name (keyword_argument (identifier_fg) identifier_fg (string_"cyan") string_"cyan" )keyword_argument )argument_list )call )pair (pair (string_"username") string_"username" (call (attribute (identifier_click) identifier_click (identifier_style) identifier_style )attribute (argument_list (identifier_username) identifier_username (keyword_argument (identifier_fg) identifier_fg (string_"magenta") string_"magenta" )keyword_argument )argument_list )call )pair (pair (string_"email") string_"email" (call (attribute (identifier_click) identifier_click (identifier_style) identifier_style )attribute (argument_list (identifier_email) identifier_email (keyword_argument (identifier_fg) identifier_fg (string_"green") string_"green" )keyword_argument )argument_list )call )pair )dictionary )binary_operator )argument_list )call )expression_statement )block )else_clause )if_statement )block )function_definition )module
Retrieve your current authentication status.
(module (function_definition (function_name_append_value) function_name_append_value (parameters (identifier_dictionary) identifier_dictionary (identifier_key) identifier_key (identifier_item) identifier_item )parameters (block (expression_statement (assignment (identifier_items) identifier_items (call (attribute (identifier_dictionary) identifier_dictionary (identifier_get) identifier_get )attribute (argument_list (identifier_key) identifier_key (list )list )argument_list )call )assignment )expression_statement (expression_statement (call (attribute (identifier_items) identifier_items (identifier_append) identifier_append )attribute (argument_list (identifier_item) identifier_item )argument_list )call )expression_statement (expression_statement (assignment (subscript (identifier_dictionary) identifier_dictionary (identifier_key) identifier_key )subscript (identifier_items) identifier_items )assignment )expression_statement )block )function_definition )module
Append those items to the values for that key
(module (function_definition (function_name_endpoint_update) function_name_endpoint_update (parameters (dictionary_splat_pattern (identifier_kwargs) identifier_kwargs )dictionary_splat_pattern )parameters (block (expression_statement (assignment (identifier_client) identifier_client (call (identifier_get_client) identifier_get_client (argument_list )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_endpoint_id) identifier_endpoint_id (call (attribute (identifier_kwargs) identifier_kwargs (identifier_pop) identifier_pop )attribute (argument_list (string_"endpoint_id") string_"endpoint_id" )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_get_res) identifier_get_res (call (attribute (identifier_client) identifier_client (identifier_get_endpoint) identifier_get_endpoint )attribute (argument_list (identifier_endpoint_id) identifier_endpoint_id )argument_list )call )assignment )expression_statement (if_statement (subscript (identifier_get_res) identifier_get_res (string_"host_endpoint_id") string_"host_endpoint_id" )subscript (block (expression_statement (assignment (identifier_endpoint_type) identifier_endpoint_type (string_"shared") string_"shared" )assignment )expression_statement )block (elif_clause (subscript (identifier_get_res) identifier_get_res (string_"is_globus_connect") string_"is_globus_connect" )subscript (block (expression_statement (assignment (identifier_endpoint_type) identifier_endpoint_type (string_"personal") string_"personal" )assignment )expression_statement )block )elif_clause (elif_clause (subscript (identifier_get_res) identifier_get_res (string_"s3_url") string_"s3_url" )subscript (block (expression_statement (assignment (identifier_endpoint_type) identifier_endpoint_type (string_"s3") string_"s3" )assignment )expression_statement )block )elif_clause (else_clause (block (expression_statement (assignment (identifier_endpoint_type) identifier_endpoint_type (string_"server") string_"server" )assignment )expression_statement )block )else_clause )if_statement (expression_statement (call (identifier_validate_endpoint_create_and_update_params) identifier_validate_endpoint_create_and_update_params (argument_list (identifier_endpoint_type) identifier_endpoint_type (subscript (identifier_get_res) identifier_get_res (string_"subscription_id") string_"subscription_id" )subscript (identifier_kwargs) identifier_kwargs )argument_list )call )expression_statement (expression_statement (assignment (identifier_ep_doc) identifier_ep_doc (call (identifier_assemble_generic_doc) identifier_assemble_generic_doc (argument_list (string_"endpoint") string_"endpoint" (dictionary_splat (identifier_kwargs) identifier_kwargs )dictionary_splat )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_res) identifier_res (call (attribute (identifier_client) identifier_client (identifier_update_endpoint) identifier_update_endpoint )attribute (argument_list (identifier_endpoint_id) identifier_endpoint_id (identifier_ep_doc) identifier_ep_doc )argument_list )call )assignment )expression_statement (expression_statement (call (identifier_formatted_print) identifier_formatted_print (argument_list (identifier_res) identifier_res (keyword_argument (identifier_text_format) identifier_text_format (identifier_FORMAT_TEXT_RAW) identifier_FORMAT_TEXT_RAW )keyword_argument (keyword_argument (identifier_response_key) identifier_response_key (string_"message") string_"message" )keyword_argument )argument_list )call )expression_statement )block )function_definition )module
Executor for `globus endpoint update`
(module (function_definition (function_name_visit_ifexp) function_name_visit_ifexp (parameters (identifier_self) identifier_self (identifier_node) identifier_node (identifier_parent) identifier_parent )parameters (block (expression_statement (assignment (identifier_newnode) identifier_newnode (call (attribute (identifier_nodes) identifier_nodes (identifier_IfExp) identifier_IfExp )attribute (argument_list (attribute (identifier_node) identifier_node (identifier_lineno) identifier_lineno )attribute (attribute (identifier_node) identifier_node (identifier_col_offset) identifier_col_offset )attribute (identifier_parent) identifier_parent )argument_list )call )assignment )expression_statement (expression_statement (call (attribute (identifier_newnode) identifier_newnode (identifier_postinit) identifier_postinit )attribute (argument_list (call (attribute (identifier_self) identifier_self (identifier_visit) identifier_visit )attribute (argument_list (attribute (identifier_node) identifier_node (identifier_test) identifier_test )attribute (identifier_newnode) identifier_newnode )argument_list )call (call (attribute (identifier_self) identifier_self (identifier_visit) identifier_visit )attribute (argument_list (attribute (identifier_node) identifier_node (identifier_body) identifier_body )attribute (identifier_newnode) identifier_newnode )argument_list )call (call (attribute (identifier_self) identifier_self (identifier_visit) identifier_visit )attribute (argument_list (attribute (identifier_node) identifier_node (identifier_orelse) identifier_orelse )attribute (identifier_newnode) identifier_newnode )argument_list )call )argument_list )call )expression_statement (return_statement (identifier_newnode) identifier_newnode )return_statement )block )function_definition )module
visit a IfExp node by returning a fresh instance of it
(module (function_definition (function_name_to_dataframe) function_name_to_dataframe (parameters (identifier_self) identifier_self (dictionary_splat_pattern (identifier_kwargs) identifier_kwargs )dictionary_splat_pattern )parameters (block (return_statement (call (attribute (attribute (attribute (identifier_pandas) identifier_pandas (identifier_io) identifier_io )attribute (identifier_parsers) identifier_parsers )attribute (identifier_read_csv) identifier_read_csv )attribute (argument_list (attribute (identifier_self) identifier_self (identifier_path) identifier_path )attribute (keyword_argument (identifier_sep) identifier_sep (attribute (identifier_self) identifier_self (identifier_d) identifier_d )attribute )keyword_argument (dictionary_splat (identifier_kwargs) identifier_kwargs )dictionary_splat )argument_list )call )return_statement )block )function_definition )module
Load up the CSV file as a pandas dataframe
(module (function_definition (function_name_start) function_name_start (parameters (identifier_self) identifier_self )parameters (block (expression_statement (assignment (attribute (identifier_self) identifier_self (identifier__lc) identifier__lc )attribute (call (identifier_LoopingCall) identifier_LoopingCall (argument_list (attribute (identifier_self) identifier_self (identifier__download) identifier__download )attribute )argument_list )call )assignment )expression_statement (expression_statement (call (attribute (attribute (identifier_self) identifier_self (identifier__lc) identifier__lc )attribute (identifier_start) identifier_start )attribute (argument_list (integer_30) integer_30 (keyword_argument (identifier_now) identifier_now (True) True )keyword_argument )argument_list )call )expression_statement )block )function_definition )module
Start the background process.
(module (function_definition (function_name_RGB) function_name_RGB (parameters (identifier_self) identifier_self (identifier_val) identifier_val )parameters (block (expression_statement (assignment (identifier_val) identifier_val (binary_operator (call (attribute (call (attribute (identifier_np) identifier_np (identifier_atleast_1d) identifier_atleast_1d )attribute (argument_list (identifier_val) identifier_val )argument_list )call (identifier_astype) identifier_astype )attribute (argument_list (attribute (identifier_np) identifier_np (identifier_float32) identifier_float32 )attribute )argument_list )call (float_255.) float_255. )binary_operator )assignment )expression_statement (expression_statement (assignment (attribute (identifier_self) identifier_self (identifier_rgba) identifier_rgba )attribute (identifier_val) identifier_val )assignment )expression_statement )block )function_definition )module
Set the color using an Nx3 array of RGB uint8 values
(module (function_definition (function_name__hilink_decrypt) function_name__hilink_decrypt (parameters (identifier_self) identifier_self (identifier_encrypted_firmware) identifier_encrypted_firmware )parameters (block (expression_statement (assignment (identifier_cipher) identifier_cipher (call (attribute (identifier_DES) identifier_DES (identifier_new) identifier_new )attribute (argument_list (attribute (identifier_self) identifier_self (identifier_DES_KEY) identifier_DES_KEY )attribute (attribute (identifier_DES) identifier_DES (identifier_MODE_ECB) identifier_MODE_ECB )attribute )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_p1) identifier_p1 (subscript (identifier_encrypted_firmware) identifier_encrypted_firmware (slice (integer_0) integer_0 (colon) colon (integer_3) integer_3 )slice )subscript )assignment )expression_statement (expression_statement (assignment (identifier_p2) identifier_p2 (subscript (identifier_encrypted_firmware) identifier_encrypted_firmware (slice (integer_3) integer_3 (colon) colon )slice )subscript )assignment )expression_statement (expression_statement (augmented_assignment (identifier_p2) identifier_p2 (binary_operator (string_b"\x00") string_b"\x00" (parenthesized_expression (binary_operator (integer_8) integer_8 (parenthesized_expression (binary_operator (call (identifier_len) identifier_len (argument_list (identifier_p2) identifier_p2 )argument_list )call (integer_8) integer_8 )binary_operator )parenthesized_expression )binary_operator )parenthesized_expression )binary_operator )augmented_assignment )expression_statement (expression_statement (assignment (identifier_d1) identifier_d1 (binary_operator (identifier_p1) identifier_p1 (call (attribute (identifier_cipher) identifier_cipher (identifier_decrypt) identifier_decrypt )attribute (argument_list (identifier_p2) identifier_p2 )argument_list )call )binary_operator )assignment )expression_statement (expression_statement (augmented_assignment (identifier_d1) identifier_d1 (binary_operator (string_b"\x00") string_b"\x00" (parenthesized_expression (binary_operator (integer_8) integer_8 (parenthesized_expression (binary_operator (call (identifier_len) identifier_len (argument_list (identifier_d1) identifier_d1 )argument_list )call (integer_8) integer_8 )binary_operator )parenthesized_expression )binary_operator )parenthesized_expression )binary_operator )augmented_assignment )expression_statement (return_statement (call (attribute (identifier_cipher) identifier_cipher (identifier_decrypt) identifier_decrypt )attribute (argument_list (identifier_d1) identifier_d1 )argument_list )call )return_statement )block )function_definition )module
This does the actual decryption.
(module (function_definition (function_name_fetchref) function_name_fetchref (parameters (identifier_self) identifier_self (identifier_ref) identifier_ref )parameters (block (expression_statement (call (attribute (identifier_log) identifier_log (identifier_debug) identifier_debug )attribute (argument_list (string_'[%s] Fetching ref: %s') string_'[%s] Fetching ref: %s' (attribute (identifier_self) identifier_self (identifier_name) identifier_name )attribute (identifier_ref) identifier_ref )argument_list )call )expression_statement (expression_statement (assignment (identifier_fetch_info) identifier_fetch_info (call (attribute (call (attribute (attribute (attribute (attribute (identifier_self) identifier_self (identifier_repo) identifier_repo )attribute (identifier_remotes) identifier_remotes )attribute (identifier_origin) identifier_origin )attribute (identifier_fetch) identifier_fetch )attribute (argument_list (identifier_ref) identifier_ref )argument_list )call (identifier_pop) identifier_pop )attribute (argument_list )argument_list )call )assignment )expression_statement (return_statement (attribute (identifier_fetch_info) identifier_fetch_info (identifier_ref) identifier_ref )attribute )return_statement )block )function_definition )module
Fetch a particular git ref.
(module (function_definition (function_name_ansi) function_name_ansi (parameters (identifier_color) identifier_color (identifier_text) identifier_text )parameters (block (expression_statement (assignment (identifier_code) identifier_code (subscript (identifier_COLOR_CODES) identifier_COLOR_CODES (identifier_color) identifier_color )subscript )assignment )expression_statement (return_statement (call (attribute (string_'\033[1;{0}m{1}{2}') string_'\033[1;{0}m{1}{2}' (identifier_format) identifier_format )attribute (argument_list (identifier_code) identifier_code (identifier_text) identifier_text (identifier_RESET_TERM) identifier_RESET_TERM )argument_list )call )return_statement )block )function_definition )module
Wrap text in an ansi escape sequence
(module (function_definition (function_name__detect_term_type) function_name__detect_term_type (parameters )parameters (block (if_statement (comparison_operator (attribute (identifier_os) identifier_os (identifier_name) identifier_name )attribute (string_'nt') string_'nt' )comparison_operator (block (if_statement (comparison_operator (call (attribute (attribute (identifier_os) identifier_os (identifier_environ) identifier_environ )attribute (identifier_get) identifier_get )attribute (argument_list (string_'TERM') string_'TERM' )argument_list )call (string_'xterm') string_'xterm' )comparison_operator (block (return_statement (string_'mintty') string_'mintty' )return_statement )block (else_clause (block (return_statement (string_'nt') string_'nt' )return_statement )block )else_clause )if_statement )block )if_statement (if_statement (call (attribute (call (attribute (call (attribute (identifier_platform) identifier_platform (identifier_system) identifier_system )attribute (argument_list )argument_list )call (identifier_upper) identifier_upper )attribute (argument_list )argument_list )call (identifier_startswith) identifier_startswith )attribute (argument_list (string_'CYGWIN') string_'CYGWIN' )argument_list )call (block (return_statement (string_'cygwin') string_'cygwin' )return_statement )block )if_statement (return_statement (string_'posix') string_'posix' )return_statement )block )function_definition )module
Detect the type of the terminal.
(module (function_definition (function_name__readcsv) function_name__readcsv (parameters (identifier_self) identifier_self (identifier_path_to_csv) identifier_path_to_csv )parameters (block (return_statement (call (attribute (identifier_np) identifier_np (identifier_genfromtxt) identifier_genfromtxt )attribute (argument_list (identifier_path_to_csv) identifier_path_to_csv (keyword_argument (identifier_dtype) identifier_dtype (None) None )keyword_argument (keyword_argument (identifier_delimiter) identifier_delimiter (string_',') string_',' )keyword_argument (keyword_argument (identifier_names) identifier_names (True) True )keyword_argument )argument_list )call )return_statement )block )function_definition )module
reads a csv column
(module (function_definition (function_name_update_alarm) function_name_update_alarm (parameters (identifier_self) identifier_self (identifier_entity) identifier_entity (identifier_alarm) identifier_alarm (default_parameter (identifier_criteria) identifier_criteria (None) None )default_parameter (default_parameter (identifier_disabled) identifier_disabled (False) False )default_parameter (default_parameter (identifier_label) identifier_label (None) None )default_parameter (default_parameter (identifier_name) identifier_name (None) None )default_parameter (default_parameter (identifier_metadata) identifier_metadata (None) None )default_parameter )parameters (block (return_statement (call (attribute (identifier_entity) identifier_entity (identifier_update_alarm) identifier_update_alarm )attribute (argument_list (identifier_alarm) identifier_alarm (keyword_argument (identifier_criteria) identifier_criteria (identifier_criteria) identifier_criteria )keyword_argument (keyword_argument (identifier_disabled) identifier_disabled (identifier_disabled) identifier_disabled )keyword_argument (keyword_argument (identifier_label) identifier_label (identifier_label) identifier_label )keyword_argument (keyword_argument (identifier_name) identifier_name (identifier_name) identifier_name )keyword_argument (keyword_argument (identifier_metadata) identifier_metadata (identifier_metadata) identifier_metadata )keyword_argument )argument_list )call )return_statement )block )function_definition )module
Updates an existing alarm on the given entity.
(module (function_definition (function_name__setup_tls_files) function_name__setup_tls_files (parameters (identifier_self) identifier_self (identifier_files) identifier_files )parameters (block (for_statement (identifier_file_type) identifier_file_type (identifier_TLSFileType) identifier_TLSFileType (block (if_statement (comparison_operator (attribute (identifier_file_type) identifier_file_type (identifier_value) identifier_value )attribute (identifier_files) identifier_files )comparison_operator (block (expression_statement (assignment (identifier_file_path) identifier_file_path (subscript (identifier_files) identifier_files (attribute (identifier_file_type) identifier_file_type (identifier_value) identifier_value )attribute )subscript )assignment )expression_statement (expression_statement (call (identifier_setattr) identifier_setattr (argument_list (identifier_self) identifier_self (attribute (identifier_file_type) identifier_file_type (identifier_value) identifier_value )attribute (call (identifier_TLSFile) identifier_TLSFile (argument_list (identifier_file_path) identifier_file_path (keyword_argument (identifier_file_type) identifier_file_type (identifier_file_type) identifier_file_type )keyword_argument )argument_list )call )argument_list )call )expression_statement )block )if_statement )block )for_statement )block )function_definition )module
Initiates TLSFIle objects with the paths given to this bundle
(module (function_definition (function_name_seekset_ng) function_name_seekset_ng (parameters (identifier_func) identifier_func )parameters (block (decorated_definition (decorator (call (attribute (identifier_functools) identifier_functools (identifier_wraps) identifier_wraps )attribute (argument_list (identifier_func) identifier_func )argument_list )call )decorator (function_definition (function_name_seekcur) function_name_seekcur (parameters (identifier_file) identifier_file (list_splat_pattern (identifier_args) identifier_args )list_splat_pattern (default_parameter (identifier_seekset) identifier_seekset (attribute (identifier_os) identifier_os (identifier_SEEK_SET) identifier_SEEK_SET )attribute )default_parameter (dictionary_splat_pattern (identifier_kw) identifier_kw )dictionary_splat_pattern )parameters (block (expression_statement (call (attribute (identifier_file) identifier_file (identifier_seek) identifier_seek )attribute (argument_list (identifier_seekset) identifier_seekset (attribute (identifier_os) identifier_os (identifier_SEEK_SET) identifier_SEEK_SET )attribute )argument_list )call )expression_statement (expression_statement (assignment (identifier_return_) identifier_return_ (call (identifier_func) identifier_func (argument_list (identifier_file) identifier_file (list_splat (identifier_args) identifier_args )list_splat (keyword_argument (identifier_seekset) identifier_seekset (identifier_seekset) identifier_seekset )keyword_argument (dictionary_splat (identifier_kw) identifier_kw )dictionary_splat )argument_list )call )assignment )expression_statement (return_statement (identifier_return_) identifier_return_ )return_statement )block )function_definition )decorated_definition (return_statement (identifier_seekcur) identifier_seekcur )return_statement )block )function_definition )module
Read file from start then set back to original.
(module (function_definition (function_name__parse_topic) function_name__parse_topic (parameters (identifier_client) identifier_client (identifier_command) identifier_command (identifier_actor) identifier_actor (identifier_args) identifier_args )parameters (block (expression_statement (assignment (pattern_list (identifier_channel) identifier_channel (identifier__) identifier__ (identifier_topic) identifier_topic )pattern_list (call (attribute (identifier_args) identifier_args (identifier_partition) identifier_partition )attribute (argument_list (string_" :") string_" :" )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_channel) identifier_channel (call (attribute (attribute (identifier_client) identifier_client (identifier_server) identifier_server )attribute (identifier_get_channel) identifier_get_channel )attribute (argument_list (identifier_channel) identifier_channel )argument_list )call )assignment )expression_statement (expression_statement (assignment (attribute (identifier_channel) identifier_channel (identifier_topic) identifier_topic )attribute (boolean_operator (identifier_topic) identifier_topic (None) None )boolean_operator )assignment )expression_statement (if_statement (identifier_actor) identifier_actor (block (expression_statement (assignment (identifier_actor) identifier_actor (call (identifier_User) identifier_User (argument_list (identifier_actor) identifier_actor )argument_list )call )assignment )expression_statement )block )if_statement (expression_statement (call (attribute (identifier_client) identifier_client (identifier_dispatch_event) identifier_dispatch_event )attribute (argument_list (string_"TOPIC") string_"TOPIC" (identifier_actor) identifier_actor (identifier_channel) identifier_channel (identifier_topic) identifier_topic )argument_list )call )expression_statement )block )function_definition )module
Parse a TOPIC and update channel state, then dispatch a TOPIC event.
(module (function_definition (function_name__add_nested) function_name__add_nested (parameters (identifier_self) identifier_self (identifier_rec) identifier_rec (identifier_name) identifier_name (identifier_value) identifier_value )parameters (block (expression_statement (assignment (tuple_pattern (identifier_typedef) identifier_typedef (identifier_target_term) identifier_target_term )tuple_pattern (call (attribute (call (attribute (subscript (call (attribute (identifier_value) identifier_value (identifier_split) identifier_split )attribute (argument_list (string_'!') string_'!' )argument_list )call (integer_0) integer_0 )subscript (identifier_rstrip) identifier_rstrip )attribute (argument_list )argument_list )call (identifier_split) identifier_split )attribute (argument_list (string_' ') string_' ' )argument_list )call )assignment )expression_statement (expression_statement (call (attribute (subscript (call (identifier_getattr) identifier_getattr (argument_list (identifier_rec) identifier_rec (identifier_name) identifier_name )argument_list )call (identifier_typedef) identifier_typedef )subscript (identifier_append) identifier_append )attribute (argument_list (identifier_target_term) identifier_target_term )argument_list )call )expression_statement )block )function_definition )module
Adds a term's nested attributes.
(module (function_definition (function_name_steady_connection) function_name_steady_connection (parameters (identifier_self) identifier_self )parameters (block (return_statement (call (identifier_connect) identifier_connect (argument_list (attribute (identifier_self) identifier_self (identifier__creator) identifier__creator )attribute (attribute (identifier_self) identifier_self (identifier__maxusage) identifier__maxusage )attribute (attribute (identifier_self) identifier_self (identifier__setsession) identifier__setsession )attribute (attribute (identifier_self) identifier_self (identifier__failures) identifier__failures )attribute (attribute (identifier_self) identifier_self (identifier__ping) identifier__ping )attribute (attribute (identifier_self) identifier_self (identifier__closeable) identifier__closeable )attribute (list_splat (attribute (identifier_self) identifier_self (identifier__args) identifier__args )attribute )list_splat (dictionary_splat (attribute (identifier_self) identifier_self (identifier__kwargs) identifier__kwargs )attribute )dictionary_splat )argument_list )call )return_statement )block )function_definition )module
Get a steady, non-persistent DB-API 2 connection.
(module (function_definition (function_name_read) function_name_read (parameters (identifier_self) identifier_self (default_parameter (identifier_timeout) identifier_timeout (float_1.0) float_1.0 )default_parameter )parameters (block (expression_statement (assignment (attribute (attribute (identifier_self) identifier_self (identifier_ser) identifier_ser )attribute (identifier_timeout) identifier_timeout )attribute (identifier_timeout) identifier_timeout )assignment )expression_statement (if_statement (comparison_operator (attribute (identifier_self) identifier_self (identifier_ser) identifier_ser )attribute (None) None )comparison_operator (block (return_statement (string_'') string_'' )return_statement )block )if_statement (return_statement (call (attribute (attribute (identifier_self) identifier_self (identifier_ser) identifier_ser )attribute (identifier_readline) identifier_readline )attribute (argument_list )argument_list )call )return_statement )block )function_definition )module
read from modem port, return null string on timeout.
(module (function_definition (function_name___get_all_child_accounts_as_array) function_name___get_all_child_accounts_as_array (parameters (identifier_self) identifier_self (typed_parameter (identifier_account) identifier_account (type (identifier_Account) identifier_Account )type )typed_parameter )parameters (type (generic_type (identifier_List) identifier_List (type_parameter (type (identifier_Account) identifier_Account )type )type_parameter )generic_type )type (block (expression_statement (assignment (identifier_result) identifier_result (list )list )assignment )expression_statement (expression_statement (call (attribute (identifier_result) identifier_result (identifier_append) identifier_append )attribute (argument_list (identifier_account) identifier_account )argument_list )call )expression_statement (for_statement (identifier_child) identifier_child (attribute (identifier_account) identifier_account (identifier_children) identifier_children )attribute (block (expression_statement (assignment (identifier_sub_accounts) identifier_sub_accounts (call (attribute (identifier_self) identifier_self (identifier___get_all_child_accounts_as_array) identifier___get_all_child_accounts_as_array )attribute (argument_list (identifier_child) identifier_child )argument_list )call )assignment )expression_statement (expression_statement (augmented_assignment (identifier_result) identifier_result (identifier_sub_accounts) identifier_sub_accounts )augmented_assignment )expression_statement )block )for_statement (return_statement (identifier_result) identifier_result )return_statement )block )function_definition )module
Returns the whole tree of child accounts in a list
(module (function_definition (function_name_unhumanize_class) function_name_unhumanize_class (parameters (identifier_my_classes) identifier_my_classes )parameters (block (expression_statement (assignment (identifier_result) identifier_result (list )list )assignment )expression_statement (expression_statement (assignment (identifier_interval) identifier_interval (binary_operator (subscript (identifier_my_classes) identifier_my_classes (unary_operator (integer_1) integer_1 )unary_operator )subscript (subscript (identifier_my_classes) identifier_my_classes (unary_operator (integer_2) integer_2 )unary_operator )subscript )binary_operator )assignment )expression_statement (expression_statement (assignment (identifier_min_value) identifier_min_value (integer_0) integer_0 )assignment )expression_statement (for_statement (identifier_max_value) identifier_max_value (identifier_my_classes) identifier_my_classes (block (expression_statement (call (attribute (identifier_result) identifier_result (identifier_append) identifier_append )attribute (argument_list (tuple (call (identifier_format_decimal) identifier_format_decimal (argument_list (identifier_interval) identifier_interval (identifier_min_value) identifier_min_value )argument_list )call (call (identifier_format_decimal) identifier_format_decimal (argument_list (identifier_interval) identifier_interval (identifier_max_value) identifier_max_value )argument_list )call )tuple )argument_list )call )expression_statement (expression_statement (assignment (identifier_min_value) identifier_min_value (identifier_max_value) identifier_max_value )assignment )expression_statement )block )for_statement (return_statement (identifier_result) identifier_result )return_statement )block )function_definition )module
Return class as interval without formatting.
(module (function_definition (function_name_install_scripts) function_name_install_scripts (parameters (identifier_distributions) identifier_distributions )parameters (block (try_statement (block (if_statement (comparison_operator (string_"__PEX_UNVENDORED__") string_"__PEX_UNVENDORED__" (attribute (call (identifier___import__) identifier___import__ (argument_list (string_"os") string_"os" )argument_list )call (identifier_environ) identifier_environ )attribute )comparison_operator (block (import_from_statement (dotted_name (identifier_setuptools) identifier_setuptools (identifier_command) identifier_command )dotted_name (dotted_name (identifier_easy_install) identifier_easy_install )dotted_name )import_from_statement )block (else_clause (block (import_from_statement (dotted_name (identifier_pex) identifier_pex (identifier_third_party) identifier_third_party (identifier_setuptools) identifier_setuptools (identifier_command) identifier_command )dotted_name (dotted_name (identifier_easy_install) identifier_easy_install )dotted_name )import_from_statement )block )else_clause )if_statement (if_statement (comparison_operator (string_"__PEX_UNVENDORED__") string_"__PEX_UNVENDORED__" (attribute (call (identifier___import__) identifier___import__ (argument_list (string_"os") string_"os" )argument_list )call (identifier_environ) identifier_environ )attribute )comparison_operator (block (import_statement (dotted_name (identifier_pkg_resources) identifier_pkg_resources )dotted_name )import_statement )block (else_clause (block (import_statement (aliased_import (dotted_name (identifier_pex) identifier_pex (identifier_third_party) identifier_third_party (identifier_pkg_resources) identifier_pkg_resources )dotted_name (identifier_pkg_resources) identifier_pkg_resources )aliased_import )import_statement )block )else_clause )if_statement )block (except_clause (identifier_ImportError) identifier_ImportError (block (raise_statement (call (identifier_RuntimeError) identifier_RuntimeError (argument_list (string_"'wheel install_scripts' needs setuptools.") string_"'wheel install_scripts' needs setuptools." )argument_list )call )raise_statement )block )except_clause )try_statement (for_statement (identifier_dist) identifier_dist (identifier_distributions) identifier_distributions (block (expression_statement (assignment (identifier_pkg_resources_dist) identifier_pkg_resources_dist (call (attribute (identifier_pkg_resources) identifier_pkg_resources (identifier_get_distribution) identifier_get_distribution )attribute (argument_list (identifier_dist) identifier_dist )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_install) identifier_install (call (identifier_get_install_command) identifier_get_install_command (argument_list (identifier_dist) identifier_dist )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_command) identifier_command (call (attribute (identifier_easy_install) identifier_easy_install (identifier_easy_install) identifier_easy_install )attribute (argument_list (attribute (identifier_install) identifier_install (identifier_distribution) identifier_distribution )attribute )argument_list )call )assignment )expression_statement (expression_statement (assignment (attribute (identifier_command) identifier_command (identifier_args) identifier_args )attribute (list (string_'wheel') string_'wheel' )list )assignment )expression_statement (expression_statement (call (attribute (identifier_command) identifier_command (identifier_finalize_options) identifier_finalize_options )attribute (argument_list )argument_list )call )expression_statement (expression_statement (call (attribute (identifier_command) identifier_command (identifier_install_egg_scripts) identifier_install_egg_scripts )attribute (argument_list (identifier_pkg_resources_dist) identifier_pkg_resources_dist )argument_list )call )expression_statement )block )for_statement )block )function_definition )module
Regenerate the entry_points console_scripts for the named distribution.
(module (function_definition (function_name__add_device) function_name__add_device (parameters (identifier_self) identifier_self (identifier_scs_id) identifier_scs_id (identifier_ha_id) identifier_ha_id (identifier_name) identifier_name )parameters (block (if_statement (comparison_operator (identifier_scs_id) identifier_scs_id (attribute (identifier_self) identifier_self (identifier__devices) identifier__devices )attribute )comparison_operator (block (return_statement )return_statement )block )if_statement (expression_statement (assignment (subscript (attribute (identifier_self) identifier_self (identifier__devices) identifier__devices )attribute (identifier_scs_id) identifier_scs_id )subscript (dictionary (pair (string_'name') string_'name' (identifier_name) identifier_name )pair (pair (string_'ha_id') string_'ha_id' (identifier_ha_id) identifier_ha_id )pair )dictionary )assignment )expression_statement )block )function_definition )module
Add device to the list of known ones
(module (function_definition (function_name__refresh_mine_cache) function_name__refresh_mine_cache (parameters (identifier_wrapped) identifier_wrapped )parameters (block (decorated_definition (decorator (call (attribute (identifier_functools) identifier_functools (identifier_wraps) identifier_wraps )attribute (argument_list (identifier_wrapped) identifier_wrapped )argument_list )call )decorator (function_definition (function_name_wrapper) function_name_wrapper (parameters (list_splat_pattern (identifier_args) identifier_args )list_splat_pattern (dictionary_splat_pattern (identifier_kwargs) identifier_kwargs )dictionary_splat_pattern )parameters (block (expression_statement (assignment (identifier_returned) identifier_returned (call (identifier_wrapped) identifier_wrapped (argument_list (list_splat (identifier_args) identifier_args )list_splat (dictionary_splat (call (subscript (identifier___utils__) identifier___utils__ (string_'args.clean_kwargs') string_'args.clean_kwargs' )subscript (argument_list (dictionary_splat (identifier_kwargs) identifier_kwargs )dictionary_splat )argument_list )call )dictionary_splat )argument_list )call )assignment )expression_statement (if_statement (call (identifier__check_update_mine) identifier__check_update_mine (argument_list )argument_list )call (block (expression_statement (call (subscript (identifier___salt__) identifier___salt__ (string_'mine.send') string_'mine.send' )subscript (argument_list (string_'docker.ps') string_'docker.ps' (keyword_argument (identifier_verbose) identifier_verbose (True) True )keyword_argument (keyword_argument (identifier_all) identifier_all (True) True )keyword_argument (keyword_argument (identifier_host) identifier_host (True) True )keyword_argument )argument_list )call )expression_statement )block )if_statement (return_statement (identifier_returned) identifier_returned )return_statement )block )function_definition )decorated_definition (return_statement (identifier_wrapper) identifier_wrapper )return_statement )block )function_definition )module
Decorator to trigger a refresh of salt mine data.
(module (function_definition (function_name__verify) function_name__verify (parameters (identifier_self) identifier_self (default_parameter (identifier_path_prefix) identifier_path_prefix (None) None )default_parameter )parameters (block (for_statement (pattern_list (identifier_field) identifier_field (identifier_spec) identifier_spec )pattern_list (call (attribute (attribute (identifier_self) identifier_self (identifier_doc_spec) identifier_doc_spec )attribute (identifier_iteritems) identifier_iteritems )attribute (argument_list )argument_list )call (block (expression_statement (assignment (identifier_path) identifier_path (call (attribute (identifier_self) identifier_self (identifier__append_path) identifier__append_path )attribute (argument_list (identifier_path_prefix) identifier_path_prefix (identifier_field) identifier_field )argument_list )call )assignment )expression_statement (if_statement (call (identifier_isinstance) identifier_isinstance (argument_list (identifier_spec) identifier_spec (identifier_dict) identifier_dict )argument_list )call (block (expression_statement (call (attribute (identifier_self) identifier_self (identifier__verify_field_spec) identifier__verify_field_spec )attribute (argument_list (identifier_spec) identifier_spec (identifier_path) identifier_path )argument_list )call )expression_statement )block (else_clause (block (raise_statement (call (identifier_SchemaFormatException) identifier_SchemaFormatException (argument_list (string_"Invalid field definition for {}") string_"Invalid field definition for {}" (identifier_path) identifier_path )argument_list )call )raise_statement )block )else_clause )if_statement )block )for_statement )block )function_definition )module
Verifies that this schema's doc spec is valid and makes sense.
(module (function_definition (function_name_all_files) function_name_all_files (parameters (identifier_self) identifier_self )parameters (block (return_statement (call (identifier_set) identifier_set (argument_list (list_comprehension (call (attribute (identifier_entry) identifier_entry (identifier_decode) identifier_decode )attribute (argument_list )argument_list )call (for_in_clause (pattern_list (identifier_entry) identifier_entry (identifier__) identifier__ )pattern_list (call (attribute (call (attribute (attribute (identifier_self) identifier_self (identifier_git) identifier_git )attribute (identifier_open_index) identifier_open_index )attribute (argument_list )argument_list )call (identifier_items) identifier_items )attribute (argument_list )argument_list )call )for_in_clause )list_comprehension )argument_list )call )return_statement )block )function_definition )module
Return a set of all the files under git control
(module (function_definition (function_name__save_notebook) function_name__save_notebook (parameters (identifier_self) identifier_self (identifier_os_path) identifier_os_path (identifier_nb) identifier_nb )parameters (block (with_statement (with_clause (with_item (as_pattern (call (attribute (identifier_self) identifier_self (identifier_atomic_writing) identifier_atomic_writing )attribute (argument_list (identifier_os_path) identifier_os_path (keyword_argument (identifier_encoding) identifier_encoding (string_'utf-8') string_'utf-8' )keyword_argument )argument_list )call (as_pattern_target (identifier_f) identifier_f )as_pattern_target )as_pattern )with_item )with_clause (block (if_statement (comparison_operator (call (identifier_ftdetect) identifier_ftdetect (argument_list (identifier_os_path) identifier_os_path )argument_list )call (string_'notebook') string_'notebook' )comparison_operator (block (expression_statement (call (attribute (identifier_nbformat) identifier_nbformat (identifier_write) identifier_write )attribute (argument_list (identifier_nb) identifier_nb (identifier_f) identifier_f (keyword_argument (identifier_version) identifier_version (attribute (identifier_nbformat) identifier_nbformat (identifier_NO_CONVERT) identifier_NO_CONVERT )attribute )keyword_argument )argument_list )call )expression_statement )block (elif_clause (comparison_operator (call (identifier_ftdetect) identifier_ftdetect (argument_list (identifier_os_path) identifier_os_path )argument_list )call (string_'markdown') string_'markdown' )comparison_operator (block (expression_statement (assignment (identifier_nbjson) identifier_nbjson (call (attribute (identifier_nbformat) identifier_nbformat (identifier_writes) identifier_writes )attribute (argument_list (identifier_nb) identifier_nb (keyword_argument (identifier_version) identifier_version (attribute (identifier_nbformat) identifier_nbformat (identifier_NO_CONVERT) identifier_NO_CONVERT )attribute )keyword_argument )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_markdown) identifier_markdown (call (identifier_convert) identifier_convert (argument_list (identifier_nbjson) identifier_nbjson (keyword_argument (identifier_informat) identifier_informat (string_'notebook') string_'notebook' )keyword_argument (keyword_argument (identifier_outformat) identifier_outformat (string_'markdown') string_'markdown' )keyword_argument (keyword_argument (identifier_strip_outputs) identifier_strip_outputs (attribute (identifier_self) identifier_self (identifier_strip_outputs) identifier_strip_outputs )attribute )keyword_argument )argument_list )call )assignment )expression_statement (expression_statement (call (attribute (identifier_f) identifier_f (identifier_write) identifier_write )attribute (argument_list (identifier_markdown) identifier_markdown )argument_list )call )expression_statement )block )elif_clause )if_statement )block )with_statement )block )function_definition )module
Save a notebook to an os_path.
(module (function_definition (function_name__feature_file) function_name__feature_file (parameters (identifier_self) identifier_self (default_parameter (identifier_parallel) identifier_parallel (None) None )default_parameter (default_parameter (identifier_index) identifier_index (None) None )default_parameter )parameters (block (if_statement (comparison_operator (identifier_index) identifier_index (None) None )comparison_operator (block (expression_statement (assignment (identifier_index) identifier_index (conditional_expression (integer_0) integer_0 (boolean_operator (comparison_operator (identifier_parallel) identifier_parallel (None) None )comparison_operator (comparison_operator (string_"SGE_TASK_ID") string_"SGE_TASK_ID" (attribute (identifier_os) identifier_os (identifier_environ) identifier_environ )attribute )comparison_operator )boolean_operator (call (identifier_int) identifier_int (argument_list (subscript (attribute (identifier_os) identifier_os (identifier_environ) identifier_environ )attribute (string_"SGE_TASK_ID") string_"SGE_TASK_ID" )subscript )argument_list )call )conditional_expression )assignment )expression_statement )block )if_statement (return_statement (call (attribute (attribute (identifier_os) identifier_os (identifier_path) identifier_path )attribute (identifier_join) identifier_join )attribute (argument_list (attribute (identifier_self) identifier_self (identifier_feature_directory) identifier_feature_directory )attribute (binary_operator (string_"Features_%02d.hdf5") string_"Features_%02d.hdf5" (identifier_index) identifier_index )binary_operator )argument_list )call )return_statement )block )function_definition )module
Returns the name of an intermediate file for storing features.
(module (function_definition (function_name__virtualenv_sys) function_name__virtualenv_sys (parameters (identifier_venv_path) identifier_venv_path )parameters (block (expression_statement (string_"obtain version and path info from a virtualenv.") string_"obtain version and path info from a virtualenv." )expression_statement (expression_statement (assignment (identifier_executable) identifier_executable (call (attribute (attribute (identifier_os) identifier_os (identifier_path) identifier_path )attribute (identifier_join) identifier_join )attribute (argument_list (identifier_venv_path) identifier_venv_path (identifier_env_bin_dir) identifier_env_bin_dir (string_'python') string_'python' )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_p) identifier_p (call (attribute (identifier_subprocess) identifier_subprocess (identifier_Popen) identifier_Popen )attribute (argument_list (list (identifier_executable) identifier_executable (string_'-c') string_'-c' (concatenated_string (string_'import sys;') string_'import sys;' (string_'print (sys.version[:3]);') string_'print (sys.version[:3]);' (string_'print ("\\n".join(sys.path));') string_'print ("\\n".join(sys.path));' )concatenated_string )list (keyword_argument (identifier_env) identifier_env (dictionary )dictionary )keyword_argument (keyword_argument (identifier_stdout) identifier_stdout (attribute (identifier_subprocess) identifier_subprocess (identifier_PIPE) identifier_PIPE )attribute )keyword_argument )argument_list )call )assignment )expression_statement (expression_statement (assignment (pattern_list (identifier_stdout) identifier_stdout (identifier_err) identifier_err )pattern_list (call (attribute (identifier_p) identifier_p (identifier_communicate) identifier_communicate )attribute (argument_list )argument_list )call )assignment )expression_statement (assert_statement (boolean_operator (not_operator (attribute (identifier_p) identifier_p (identifier_returncode) identifier_returncode )attribute )not_operator (identifier_stdout) identifier_stdout )boolean_operator )assert_statement (expression_statement (assignment (identifier_lines) identifier_lines (call (attribute (call (attribute (identifier_stdout) identifier_stdout (identifier_decode) identifier_decode )attribute (argument_list (string_'utf-8') string_'utf-8' )argument_list )call (identifier_splitlines) identifier_splitlines )attribute (argument_list )argument_list )call )assignment )expression_statement (return_statement (expression_list (subscript (identifier_lines) identifier_lines (integer_0) integer_0 )subscript (call (identifier_list) identifier_list (argument_list (call (identifier_filter) identifier_filter (argument_list (identifier_bool) identifier_bool (subscript (identifier_lines) identifier_lines (slice (integer_1) integer_1 (colon) colon )slice )subscript )argument_list )call )argument_list )call )expression_list )return_statement )block )function_definition )module
obtain version and path info from a virtualenv.
(module (function_definition (function_name_read) function_name_read (parameters (identifier_filename) identifier_filename )parameters (block (return_statement (call (attribute (call (attribute (identifier_codecs) identifier_codecs (identifier_open) identifier_open )attribute (argument_list (call (attribute (attribute (identifier_os) identifier_os (identifier_path) identifier_path )attribute (identifier_join) identifier_join )attribute (argument_list (identifier___DIR__) identifier___DIR__ (identifier_filename) identifier_filename )argument_list )call (string_'r') string_'r' )argument_list )call (identifier_read) identifier_read )attribute (argument_list )argument_list )call )return_statement )block )function_definition )module
Read and return `filename` in root dir of project and return string
(module (function_definition (function_name__CheckConnectionEncoding) function_name__CheckConnectionEncoding (parameters (identifier_cursor) identifier_cursor )parameters (block (expression_statement (assignment (identifier_cur_character_set) identifier_cur_character_set (call (identifier__ReadVariable) identifier__ReadVariable (argument_list (string_"character_set_connection") string_"character_set_connection" (identifier_cursor) identifier_cursor )argument_list )call )assignment )expression_statement (if_statement (comparison_operator (identifier_cur_character_set) identifier_cur_character_set (identifier_CHARACTER_SET) identifier_CHARACTER_SET )comparison_operator (block (raise_statement (call (identifier_EncodingEnforcementError) identifier_EncodingEnforcementError (argument_list (call (attribute (string_"Require MySQL character_set_connection of {}, got {}.") string_"Require MySQL character_set_connection of {}, got {}." (identifier_format) identifier_format )attribute (argument_list (identifier_CHARACTER_SET) identifier_CHARACTER_SET (identifier_cur_character_set) identifier_cur_character_set )argument_list )call )argument_list )call )raise_statement )block )if_statement )block )function_definition )module
Enforces a sane UTF-8 encoding for the database connection.
(module (function_definition (function_name_copy) function_name_copy (parameters (identifier_self) identifier_self )parameters (block (return_statement (call (identifier_Character) identifier_Character (argument_list (attribute (identifier_self) identifier_self (identifier_name) identifier_name )attribute (attribute (identifier_self) identifier_self (identifier_race) identifier_race )attribute (attribute (identifier_self) identifier_self (identifier_ch_class) identifier_ch_class )attribute (attribute (identifier_self) identifier_self (identifier_stats) identifier_stats )attribute (attribute (identifier_self) identifier_self (identifier_skills) identifier_skills )attribute (attribute (identifier_self) identifier_self (identifier_story) identifier_story )attribute (attribute (identifier_self) identifier_self (identifier_inventory) identifier_inventory )attribute )argument_list )call )return_statement )block )function_definition )module
make an identical copy of the character
(module (function_definition (function_name_parse_qaml) function_name_parse_qaml (parameters (identifier_self) identifier_self )parameters (block (expression_statement (call (attribute (identifier_logging) identifier_logging (identifier_info) identifier_info )attribute (argument_list (string_'Parsing GenomeQAML outputs') string_'Parsing GenomeQAML outputs' )argument_list )call )expression_statement (expression_statement (assignment (identifier_nesteddictionary) identifier_nesteddictionary (call (identifier_dict) identifier_dict (argument_list )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_dictionary) identifier_dictionary (call (attribute (call (attribute (identifier_pandas) identifier_pandas (identifier_read_csv) identifier_read_csv )attribute (argument_list (attribute (identifier_self) identifier_self (identifier_qaml_report) identifier_qaml_report )attribute )argument_list )call (identifier_to_dict) identifier_to_dict )attribute (argument_list )argument_list )call )assignment )expression_statement (for_statement (identifier_header) identifier_header (identifier_dictionary) identifier_dictionary (block (for_statement (pattern_list (identifier_sample) identifier_sample (identifier_value) identifier_value )pattern_list (call (attribute (subscript (identifier_dictionary) identifier_dictionary (identifier_header) identifier_header )subscript (identifier_items) identifier_items )attribute (argument_list )argument_list )call (block (try_statement (block (expression_statement (call (attribute (subscript (identifier_nesteddictionary) identifier_nesteddictionary (identifier_sample) identifier_sample )subscript (identifier_update) identifier_update )attribute (argument_list (dictionary (pair (identifier_header) identifier_header (identifier_value) identifier_value )pair )dictionary )argument_list )call )expression_statement )block (except_clause (identifier_KeyError) identifier_KeyError (block (expression_statement (assignment (subscript (identifier_nesteddictionary) identifier_nesteddictionary (identifier_sample) identifier_sample )subscript (call (identifier_dict) identifier_dict (argument_list )argument_list )call )assignment )expression_statement (expression_statement (call (attribute (subscript (identifier_nesteddictionary) identifier_nesteddictionary (identifier_sample) identifier_sample )subscript (identifier_update) identifier_update )attribute (argument_list (dictionary (pair (identifier_header) identifier_header (identifier_value) identifier_value )pair )dictionary )argument_list )call )expression_statement )block )except_clause )try_statement )block )for_statement )block )for_statement (for_statement (identifier_sample) identifier_sample (attribute (identifier_self) identifier_self (identifier_metadata) identifier_metadata )attribute (block (expression_statement (call (identifier_setattr) identifier_setattr (argument_list (identifier_sample) identifier_sample (attribute (identifier_self) identifier_self (identifier_analysistype) identifier_analysistype )attribute (call (identifier_GenObject) identifier_GenObject (argument_list )argument_list )call )argument_list )call )expression_statement (expression_statement (assignment (attribute (subscript (identifier_sample) identifier_sample (attribute (identifier_self) identifier_self (identifier_analysistype) identifier_analysistype )attribute )subscript (identifier_prediction) identifier_prediction )attribute (call (identifier_str) identifier_str (argument_list )argument_list )call )assignment )expression_statement (for_statement (identifier_line) identifier_line (identifier_nesteddictionary) identifier_nesteddictionary (block (expression_statement (assignment (identifier_name) identifier_name (subscript (subscript (identifier_nesteddictionary) identifier_nesteddictionary (identifier_line) identifier_line )subscript (string_'Sample') string_'Sample' )subscript )assignment )expression_statement (if_statement (comparison_operator (identifier_name) identifier_name (attribute (identifier_sample) identifier_sample (identifier_name) identifier_name )attribute )comparison_operator (block (expression_statement (assignment (attribute (subscript (identifier_sample) identifier_sample (attribute (identifier_self) identifier_self (identifier_analysistype) identifier_analysistype )attribute )subscript (identifier_prediction) identifier_prediction )attribute (subscript (subscript (identifier_nesteddictionary) identifier_nesteddictionary (identifier_line) identifier_line )subscript (string_'Predicted_Class') string_'Predicted_Class' )subscript )assignment )expression_statement )block )if_statement )block )for_statement )block )for_statement )block )function_definition )module
Parse the GenomeQAML report, and populate metadata objects
(module (function_definition (function_name_atlasdb_set_zonefile_tried_storage) function_name_atlasdb_set_zonefile_tried_storage (parameters (identifier_zonefile_hash) identifier_zonefile_hash (identifier_tried_storage) identifier_tried_storage (default_parameter (identifier_con) identifier_con (None) None )default_parameter (default_parameter (identifier_path) identifier_path (None) None )default_parameter )parameters (block (with_statement (with_clause (with_item (as_pattern (call (identifier_AtlasDBOpen) identifier_AtlasDBOpen (argument_list (keyword_argument (identifier_con) identifier_con (identifier_con) identifier_con )keyword_argument (keyword_argument (identifier_path) identifier_path (identifier_path) identifier_path )keyword_argument )argument_list )call (as_pattern_target (identifier_dbcon) identifier_dbcon )as_pattern_target )as_pattern )with_item )with_clause (block (if_statement (identifier_tried_storage) identifier_tried_storage (block (expression_statement (assignment (identifier_tried_storage) identifier_tried_storage (integer_1) integer_1 )assignment )expression_statement )block (else_clause (block (expression_statement (assignment (identifier_tried_storage) identifier_tried_storage (integer_0) integer_0 )assignment )expression_statement )block )else_clause )if_statement (expression_statement (assignment (identifier_sql) identifier_sql (string_"UPDATE zonefiles SET tried_storage = ? WHERE zonefile_hash = ?;") string_"UPDATE zonefiles SET tried_storage = ? WHERE zonefile_hash = ?;" )assignment )expression_statement (expression_statement (assignment (identifier_args) identifier_args (tuple (identifier_tried_storage) identifier_tried_storage (identifier_zonefile_hash) identifier_zonefile_hash )tuple )assignment )expression_statement (expression_statement (assignment (identifier_cur) identifier_cur (call (attribute (identifier_dbcon) identifier_dbcon (identifier_cursor) identifier_cursor )attribute (argument_list )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_res) identifier_res (call (identifier_atlasdb_query_execute) identifier_atlasdb_query_execute (argument_list (identifier_cur) identifier_cur (identifier_sql) identifier_sql (identifier_args) identifier_args )argument_list )call )assignment )expression_statement (expression_statement (call (attribute (identifier_dbcon) identifier_dbcon (identifier_commit) identifier_commit )attribute (argument_list )argument_list )call )expression_statement )block )with_statement (return_statement (True) True )return_statement )block )function_definition )module
Make a note that we tried to get the zonefile from storage
(module (function_definition (function_name_stdin_readable) function_name_stdin_readable (parameters )parameters (block (if_statement (not_operator (identifier_WINDOWS) identifier_WINDOWS )not_operator (block (try_statement (block (return_statement (call (identifier_bool) identifier_bool (argument_list (subscript (call (identifier_select) identifier_select (argument_list (list (attribute (identifier_sys) identifier_sys (identifier_stdin) identifier_stdin )attribute )list (list )list (list )list (integer_0) integer_0 )argument_list )call (integer_0) integer_0 )subscript )argument_list )call )return_statement )block (except_clause (identifier_Exception) identifier_Exception (block (expression_statement (call (attribute (identifier_logger) identifier_logger (identifier_log_exc) identifier_log_exc )attribute (argument_list )argument_list )call )expression_statement )block )except_clause )try_statement )block )if_statement (try_statement (block (return_statement (not_operator (call (attribute (attribute (identifier_sys) identifier_sys (identifier_stdin) identifier_stdin )attribute (identifier_isatty) identifier_isatty )attribute (argument_list )argument_list )call )not_operator )return_statement )block (except_clause (identifier_Exception) identifier_Exception (block (expression_statement (call (attribute (identifier_logger) identifier_logger (identifier_log_exc) identifier_log_exc )attribute (argument_list )argument_list )call )expression_statement )block )except_clause )try_statement (return_statement (False) False )return_statement )block )function_definition )module
Determine whether stdin has any data to read.
(module (function_definition (function_name_data) function_name_data (parameters (identifier_self) identifier_self )parameters (block (expression_statement (assignment (identifier_data) identifier_data (call (attribute (identifier_np) identifier_np (identifier_empty) identifier_empty )attribute (argument_list (tuple (attribute (identifier_self) identifier_self (identifier_nRows) identifier_nRows )attribute (attribute (identifier_self) identifier_self (identifier_nCols) identifier_nCols )attribute )tuple (keyword_argument (identifier_dtype) identifier_dtype (attribute (identifier_np) identifier_np (identifier_float) identifier_float )attribute )keyword_argument )argument_list )call )assignment )expression_statement (expression_statement (assignment (subscript (identifier_data) identifier_data (slice (colon) colon )slice )subscript (attribute (identifier_np) identifier_np (identifier_nan) identifier_nan )attribute )assignment )expression_statement (for_statement (pattern_list (identifier_colNum) identifier_colNum (identifier_colData) identifier_colData )pattern_list (call (identifier_enumerate) identifier_enumerate (argument_list (attribute (identifier_self) identifier_self (identifier_colData) identifier_colData )attribute )argument_list )call (block (expression_statement (assignment (identifier_validIs) identifier_validIs (subscript (call (attribute (identifier_np) identifier_np (identifier_where) identifier_where )attribute (argument_list (list_comprehension (call (attribute (identifier_np) identifier_np (identifier_isreal) identifier_isreal )attribute (argument_list (identifier_v) identifier_v )argument_list )call (for_in_clause (identifier_v) identifier_v (identifier_colData) identifier_colData )for_in_clause )list_comprehension )argument_list )call (integer_0) integer_0 )subscript )assignment )expression_statement (expression_statement (assignment (identifier_validData) identifier_validData (binary_operator (call (attribute (identifier_np) identifier_np (identifier_ones) identifier_ones )attribute (argument_list (call (identifier_len) identifier_len (argument_list (identifier_colData) identifier_colData )argument_list )call )argument_list )call (attribute (identifier_np) identifier_np (identifier_nan) identifier_nan )attribute )binary_operator )assignment )expression_statement (expression_statement (assignment (subscript (identifier_validData) identifier_validData (identifier_validIs) identifier_validIs )subscript (subscript (call (attribute (identifier_np) identifier_np (identifier_array) identifier_array )attribute (argument_list (identifier_colData) identifier_colData )argument_list )call (identifier_validIs) identifier_validIs )subscript )assignment )expression_statement (expression_statement (assignment (subscript (identifier_data) identifier_data (slice (colon) colon (call (identifier_len) identifier_len (argument_list (identifier_colData) identifier_colData )argument_list )call )slice (identifier_colNum) identifier_colNum )subscript (identifier_validData) identifier_validData )assignment )expression_statement )block )for_statement (return_statement (identifier_data) identifier_data )return_statement )block )function_definition )module
return all of colData as a 2D numpy array.
(module (function_definition (function_name_hardware_version) function_name_hardware_version (parameters (identifier_self) identifier_self )parameters (block (expression_statement (assignment (identifier_hardware_string) identifier_hardware_string (attribute (identifier_self) identifier_self (identifier_hardware_string) identifier_hardware_string )attribute )assignment )expression_statement (if_statement (not_operator (call (identifier_isinstance) identifier_isinstance (argument_list (identifier_hardware_string) identifier_hardware_string (identifier_bytes) identifier_bytes )argument_list )call )not_operator (block (expression_statement (assignment (identifier_hardware_string) identifier_hardware_string (call (attribute (attribute (identifier_self) identifier_self (identifier_hardware_string) identifier_hardware_string )attribute (identifier_encode) identifier_encode )attribute (argument_list (string_'utf-8') string_'utf-8' )argument_list )call )assignment )expression_statement )block )if_statement (if_statement (comparison_operator (call (identifier_len) identifier_len (argument_list (identifier_hardware_string) identifier_hardware_string )argument_list )call (integer_10) integer_10 )comparison_operator (block (expression_statement (call (attribute (attribute (identifier_self) identifier_self (identifier__logger) identifier__logger )attribute (identifier_warn) identifier_warn )attribute (argument_list (string_"Truncating hardware string that was longer than 10 bytes: %s") string_"Truncating hardware string that was longer than 10 bytes: %s" (attribute (identifier_self) identifier_self (identifier_hardware_string) identifier_hardware_string )attribute )argument_list )call )expression_statement )block )if_statement (if_statement (comparison_operator (call (identifier_len) identifier_len (argument_list (identifier_hardware_string) identifier_hardware_string )argument_list )call (integer_10) integer_10 )comparison_operator (block (expression_statement (augmented_assignment (identifier_hardware_string) identifier_hardware_string (binary_operator (string_b'\0') string_b'\0' (parenthesized_expression (binary_operator (integer_10) integer_10 (call (identifier_len) identifier_len (argument_list (identifier_hardware_string) identifier_hardware_string )argument_list )call )binary_operator )parenthesized_expression )binary_operator )augmented_assignment )expression_statement )block )if_statement (return_statement (list (identifier_hardware_string) identifier_hardware_string )list )return_statement )block )function_definition )module
Get a hardware identification string.
(module (function_definition (function_name_write_astrom_data) function_name_write_astrom_data (parameters (identifier_self) identifier_self (identifier_astrom_data) identifier_astrom_data )parameters (block (expression_statement (call (attribute (identifier_self) identifier_self (identifier_write_headers) identifier_write_headers )attribute (argument_list (attribute (identifier_astrom_data) identifier_astrom_data (identifier_observations) identifier_observations )attribute (attribute (identifier_astrom_data) identifier_astrom_data (identifier_sys_header) identifier_sys_header )attribute )argument_list )call )expression_statement (expression_statement (call (attribute (identifier_self) identifier_self (identifier__write_source_data) identifier__write_source_data )attribute (argument_list (attribute (identifier_astrom_data) identifier_astrom_data (identifier_sources) identifier_sources )attribute )argument_list )call )expression_statement )block )function_definition )module
Writes a full AstromData structure at once.
(module (function_definition (function_name__init_attr_config) function_name__init_attr_config (parameters (identifier_attr_cfg) identifier_attr_cfg )parameters (block (expression_statement (assignment (attribute (identifier_attr_cfg) identifier_attr_cfg (identifier_name) identifier_name )attribute (string_'') string_'' )assignment )expression_statement (expression_statement (assignment (attribute (identifier_attr_cfg) identifier_attr_cfg (identifier_writable) identifier_writable )attribute (attribute (identifier_AttrWriteType) identifier_AttrWriteType (identifier_READ) identifier_READ )attribute )assignment )expression_statement (expression_statement (assignment (attribute (identifier_attr_cfg) identifier_attr_cfg (identifier_data_format) identifier_data_format )attribute (attribute (identifier_AttrDataFormat) identifier_AttrDataFormat (identifier_SCALAR) identifier_SCALAR )attribute )assignment )expression_statement (expression_statement (assignment (attribute (identifier_attr_cfg) identifier_attr_cfg (identifier_data_type) identifier_data_type )attribute (integer_0) integer_0 )assignment )expression_statement (expression_statement (assignment (attribute (identifier_attr_cfg) identifier_attr_cfg (identifier_max_dim_x) identifier_max_dim_x )attribute (integer_0) integer_0 )assignment )expression_statement (expression_statement (assignment (attribute (identifier_attr_cfg) identifier_attr_cfg (identifier_max_dim_y) identifier_max_dim_y )attribute (integer_0) integer_0 )assignment )expression_statement (expression_statement (assignment (attribute (identifier_attr_cfg) identifier_attr_cfg (identifier_description) identifier_description )attribute (string_'') string_'' )assignment )expression_statement (expression_statement (assignment (attribute (identifier_attr_cfg) identifier_attr_cfg (identifier_label) identifier_label )attribute (string_'') string_'' )assignment )expression_statement (expression_statement (assignment (attribute (identifier_attr_cfg) identifier_attr_cfg (identifier_unit) identifier_unit )attribute (string_'') string_'' )assignment )expression_statement (expression_statement (assignment (attribute (identifier_attr_cfg) identifier_attr_cfg (identifier_standard_unit) identifier_standard_unit )attribute (string_'') string_'' )assignment )expression_statement (expression_statement (assignment (attribute (identifier_attr_cfg) identifier_attr_cfg (identifier_display_unit) identifier_display_unit )attribute (string_'') string_'' )assignment )expression_statement (expression_statement (assignment (attribute (identifier_attr_cfg) identifier_attr_cfg (identifier_format) identifier_format )attribute (string_'') string_'' )assignment )expression_statement (expression_statement (assignment (attribute (identifier_attr_cfg) identifier_attr_cfg (identifier_min_value) identifier_min_value )attribute (string_'') string_'' )assignment )expression_statement (expression_statement (assignment (attribute (identifier_attr_cfg) identifier_attr_cfg (identifier_max_value) identifier_max_value )attribute (string_'') string_'' )assignment )expression_statement (expression_statement (assignment (attribute (identifier_attr_cfg) identifier_attr_cfg (identifier_writable_attr_name) identifier_writable_attr_name )attribute (string_'') string_'' )assignment )expression_statement (expression_statement (assignment (attribute (identifier_attr_cfg) identifier_attr_cfg (identifier_extensions) identifier_extensions )attribute (list )list )assignment )expression_statement )block )function_definition )module
Helper function to initialize attribute config objects
(module (function_definition (function_name_update_role) function_name_update_role (parameters (identifier_u_name) identifier_u_name (identifier_newprivilege) identifier_newprivilege )parameters (block (expression_statement (assignment (identifier_entry) identifier_entry (call (attribute (call (attribute (identifier_TabMember) identifier_TabMember (identifier_update) identifier_update )attribute (argument_list (keyword_argument (identifier_role) identifier_role (identifier_newprivilege) identifier_newprivilege )keyword_argument )argument_list )call (identifier_where) identifier_where )attribute (argument_list (comparison_operator (attribute (identifier_TabMember) identifier_TabMember (identifier_user_name) identifier_user_name )attribute (identifier_u_name) identifier_u_name )comparison_operator )argument_list )call )assignment )expression_statement (try_statement (block (expression_statement (call (attribute (identifier_entry) identifier_entry (identifier_execute) identifier_execute )attribute (argument_list )argument_list )call )expression_statement (return_statement (True) True )return_statement )block (except_clause (block (return_statement (False) False )return_statement )block )except_clause )try_statement )block )function_definition )module
Update the role of the usr.
(module (function_definition (function_name__find_classes_param) function_name__find_classes_param (parameters (identifier_self) identifier_self )parameters (block (for_statement (identifier_attr) identifier_attr (list (string_"classes_") string_"classes_" )list (block (try_statement (block (return_statement (call (identifier_getattr) identifier_getattr (argument_list (attribute (identifier_self) identifier_self (identifier_estimator) identifier_estimator )attribute (identifier_attr) identifier_attr )argument_list )call )return_statement )block (except_clause (identifier_AttributeError) identifier_AttributeError (block (continue_statement )continue_statement )block )except_clause )try_statement )block )for_statement (raise_statement (call (identifier_YellowbrickTypeError) identifier_YellowbrickTypeError (argument_list (call (attribute (string_"could not find classes_ param on {}") string_"could not find classes_ param on {}" (identifier_format) identifier_format )attribute (argument_list (attribute (attribute (attribute (identifier_self) identifier_self (identifier_estimator) identifier_estimator )attribute (identifier___class__) identifier___class__ )attribute (identifier___name__) identifier___name__ )attribute )argument_list )call )argument_list )call )raise_statement )block )function_definition )module
Searches the wrapped model for the classes_ parameter.
(module (function_definition (function_name_check_manual_seed) function_name_check_manual_seed (parameters (identifier_seed) identifier_seed )parameters (block (expression_statement (assignment (identifier_seed) identifier_seed (boolean_operator (identifier_seed) identifier_seed (call (attribute (identifier_random) identifier_random (identifier_randint) identifier_randint )attribute (argument_list (integer_1) integer_1 (integer_10000) integer_10000 )argument_list )call )boolean_operator )assignment )expression_statement (expression_statement (call (attribute (identifier_random) identifier_random (identifier_seed) identifier_seed )attribute (argument_list (identifier_seed) identifier_seed )argument_list )call )expression_statement (expression_statement (call (attribute (identifier_torch) identifier_torch (identifier_manual_seed) identifier_manual_seed )attribute (argument_list (identifier_seed) identifier_seed )argument_list )call )expression_statement (expression_statement (call (identifier_print) identifier_print (argument_list (call (attribute (string_'Using manual seed: {seed}') string_'Using manual seed: {seed}' (identifier_format) identifier_format )attribute (argument_list (keyword_argument (identifier_seed) identifier_seed (identifier_seed) identifier_seed )keyword_argument )argument_list )call )argument_list )call )expression_statement )block )function_definition )module
If manual seed is not specified, choose a random one and communicate it to the user.
(module (function_definition (function_name_read) function_name_read (parameters (identifier_self) identifier_self (identifier_source_path) identifier_source_path )parameters (block (with_statement (with_clause (with_item (as_pattern (call (identifier_pelican_open) identifier_pelican_open (argument_list (identifier_source_path) identifier_source_path )argument_list )call (as_pattern_target (identifier_text) identifier_text )as_pattern_target )as_pattern )with_item )with_clause (block (expression_statement (assignment (identifier_parts) identifier_parts (call (attribute (identifier_text) identifier_text (identifier_split) identifier_split )attribute (argument_list (string_'----') string_'----' (integer_1) integer_1 )argument_list )call )assignment )expression_statement (if_statement (comparison_operator (call (identifier_len) identifier_len (argument_list (identifier_parts) identifier_parts )argument_list )call (integer_2) integer_2 )comparison_operator (block (expression_statement (assignment (identifier_headerlines) identifier_headerlines (call (attribute (subscript (identifier_parts) identifier_parts (integer_0) integer_0 )subscript (identifier_splitlines) identifier_splitlines )attribute (argument_list )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_headerpairs) identifier_headerpairs (call (identifier_map) identifier_map (argument_list (lambda (lambda_parameters (identifier_l) identifier_l )lambda_parameters (call (attribute (identifier_l) identifier_l (identifier_split) identifier_split )attribute (argument_list (string_':') string_':' (integer_1) integer_1 )argument_list )call )lambda (identifier_headerlines) identifier_headerlines )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_headerdict) identifier_headerdict (dictionary_comprehension (pair (subscript (identifier_pair) identifier_pair (integer_0) integer_0 )subscript (call (attribute (subscript (identifier_pair) identifier_pair (integer_1) integer_1 )subscript (identifier_strip) identifier_strip )attribute (argument_list )argument_list )call )pair (for_in_clause (identifier_pair) identifier_pair (identifier_headerpairs) identifier_headerpairs )for_in_clause (if_clause (comparison_operator (call (identifier_len) identifier_len (argument_list (identifier_pair) identifier_pair )argument_list )call (integer_2) integer_2 )comparison_operator )if_clause )dictionary_comprehension )assignment )expression_statement (expression_statement (assignment (identifier_metadata) identifier_metadata (call (attribute (identifier_self) identifier_self (identifier__parse_metadata) identifier__parse_metadata )attribute (argument_list (identifier_headerdict) identifier_headerdict )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_content) identifier_content (call (identifier_textile) identifier_textile (argument_list (subscript (identifier_parts) identifier_parts (integer_1) integer_1 )subscript )argument_list )call )assignment )expression_statement )block (else_clause (block (expression_statement (assignment (identifier_metadata) identifier_metadata (dictionary )dictionary )assignment )expression_statement (expression_statement (assignment (identifier_content) identifier_content (call (identifier_textile) identifier_textile (argument_list (identifier_text) identifier_text )argument_list )call )assignment )expression_statement )block )else_clause )if_statement )block )with_statement (return_statement (expression_list (identifier_content) identifier_content (identifier_metadata) identifier_metadata )expression_list )return_statement )block )function_definition )module
Parse content and metadata of textile files.
(module (function_definition (function_name_seek_to_packet) function_name_seek_to_packet (parameters (identifier_self) identifier_self (identifier_index) identifier_index )parameters (block (expression_statement (assignment (identifier_pointer_position) identifier_pointer_position (subscript (attribute (identifier_self) identifier_self (identifier_packet_positions) identifier_packet_positions )attribute (identifier_index) identifier_index )subscript )assignment )expression_statement (expression_statement (call (attribute (attribute (identifier_self) identifier_self (identifier_blob_file) identifier_blob_file )attribute (identifier_seek) identifier_seek )attribute (argument_list (identifier_pointer_position) identifier_pointer_position (integer_0) integer_0 )argument_list )call )expression_statement )block )function_definition )module
Move file pointer to the packet with given index.
(module (function_definition (function_name_calc_path_and_create_folders) function_name_calc_path_and_create_folders (parameters (identifier_folder) identifier_folder (identifier_import_path) identifier_import_path )parameters (block (expression_statement (assignment (identifier_file_path) identifier_file_path (call (identifier_abspath) identifier_abspath (argument_list (call (identifier_path_join) identifier_path_join (argument_list (identifier_folder) identifier_folder (binary_operator (call (attribute (subscript (identifier_import_path) identifier_import_path (slice (colon) colon (call (attribute (identifier_import_path) identifier_import_path (identifier_rfind) identifier_rfind )attribute (argument_list (string_".") string_"." )argument_list )call )slice )subscript (identifier_replace) identifier_replace )attribute (argument_list (string_".") string_"." (identifier_folder_seperator) identifier_folder_seperator )argument_list )call (string_".py") string_".py" )binary_operator )argument_list )call )argument_list )call )assignment )expression_statement (expression_statement (call (identifier_mkdir_p) identifier_mkdir_p (argument_list (call (identifier_dirname) identifier_dirname (argument_list (identifier_file_path) identifier_file_path )argument_list )call )argument_list )call )expression_statement (return_statement (identifier_file_path) identifier_file_path )return_statement )block )function_definition )module
calculate the path and create the needed folders
(module (function_definition (function_name_load) function_name_load (parameters (identifier_cls) identifier_cls (identifier_filename) identifier_filename (default_parameter (identifier_name) identifier_name (None) None )default_parameter )parameters (block (if_statement (not_operator (call (attribute (attribute (identifier_os) identifier_os (identifier_path) identifier_path )attribute (identifier_exists) identifier_exists )attribute (argument_list (identifier_filename) identifier_filename )argument_list )call )not_operator (block (return_statement (dictionary )dictionary )return_statement )block )if_statement (expression_statement (assignment (identifier_name) identifier_name (boolean_operator (identifier_name) identifier_name (identifier_filename) identifier_filename )boolean_operator )assignment )expression_statement (if_statement (comparison_operator (identifier_name) identifier_name (attribute (identifier_cls) identifier_cls (identifier__conffiles) identifier__conffiles )attribute )comparison_operator (block (with_statement (with_clause (with_item (as_pattern (call (identifier_open) identifier_open (argument_list (identifier_filename) identifier_filename )argument_list )call (as_pattern_target (identifier_fdesc) identifier_fdesc )as_pattern_target )as_pattern )with_item )with_clause (block (expression_statement (assignment (identifier_content) identifier_content (call (attribute (identifier_yaml) identifier_yaml (identifier_load) identifier_load )attribute (argument_list (identifier_fdesc) identifier_fdesc (identifier_YAMLLoader) identifier_YAMLLoader )argument_list )call )assignment )expression_statement (if_statement (comparison_operator (identifier_content) identifier_content (None) None )comparison_operator (block (expression_statement (assignment (identifier_content) identifier_content (dictionary )dictionary )assignment )expression_statement )block )if_statement (expression_statement (assignment (subscript (attribute (identifier_cls) identifier_cls (identifier__conffiles) identifier__conffiles )attribute (identifier_name) identifier_name )subscript (identifier_content) identifier_content )assignment )expression_statement )block )with_statement )block )if_statement (return_statement (subscript (attribute (identifier_cls) identifier_cls (identifier__conffiles) identifier__conffiles )attribute (identifier_name) identifier_name )subscript )return_statement )block )function_definition )module
Load yaml configuration from filename.
(module (function_definition (function_name_spawn_gdb) function_name_spawn_gdb (parameters (identifier_pid) identifier_pid (default_parameter (identifier_address) identifier_address (identifier_DFLT_ADDRESS) identifier_DFLT_ADDRESS )default_parameter (default_parameter (identifier_gdb) identifier_gdb (string_'gdb') string_'gdb' )default_parameter (default_parameter (identifier_verbose) identifier_verbose (False) False )default_parameter (default_parameter (identifier_ctx) identifier_ctx (None) None )default_parameter (default_parameter (identifier_proc_iut) identifier_proc_iut (None) None )default_parameter )parameters (block (expression_statement (assignment (pattern_list (identifier_parent) identifier_parent (identifier_child) identifier_child )pattern_list (call (attribute (identifier_socket) identifier_socket (identifier_socketpair) identifier_socketpair )attribute (argument_list )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_proc) identifier_proc (call (identifier_Popen) identifier_Popen (argument_list (list (identifier_gdb) identifier_gdb (string_'--interpreter=mi') string_'--interpreter=mi' (string_'-nx') string_'-nx' )list (keyword_argument (identifier_bufsize) identifier_bufsize (integer_0) integer_0 )keyword_argument (keyword_argument (identifier_stdin) identifier_stdin (identifier_child) identifier_child )keyword_argument (keyword_argument (identifier_stdout) identifier_stdout (identifier_child) identifier_child )keyword_argument (keyword_argument (identifier_stderr) identifier_stderr (identifier_STDOUT) identifier_STDOUT )keyword_argument )argument_list )call )assignment )expression_statement (expression_statement (call (attribute (identifier_child) identifier_child (identifier_close) identifier_close )attribute (argument_list )argument_list )call )expression_statement (expression_statement (assignment (identifier_connections) identifier_connections (dictionary )dictionary )assignment )expression_statement (expression_statement (assignment (identifier_gdb) identifier_gdb (call (identifier_GdbSocket) identifier_GdbSocket (argument_list (identifier_ctx) identifier_ctx (identifier_address) identifier_address (identifier_proc) identifier_proc (identifier_proc_iut) identifier_proc_iut (identifier_parent) identifier_parent (identifier_verbose) identifier_verbose (identifier_connections) identifier_connections )argument_list )call )assignment )expression_statement (expression_statement (call (attribute (identifier_gdb) identifier_gdb (identifier_mi_command) identifier_mi_command )attribute (argument_list (binary_operator (string_'-target-attach %d') string_'-target-attach %d' (identifier_pid) identifier_pid )binary_operator )argument_list )call )expression_statement (expression_statement (call (attribute (identifier_gdb) identifier_gdb (identifier_cli_command) identifier_cli_command )attribute (argument_list (string_'python import pdb_clone.bootstrappdb_gdb') string_'python import pdb_clone.bootstrappdb_gdb' )argument_list )call )expression_statement (expression_statement (call (attribute (identifier_asyncore) identifier_asyncore (identifier_loop) identifier_loop )attribute (argument_list (keyword_argument (identifier_map) identifier_map (identifier_connections) identifier_connections )keyword_argument )argument_list )call )expression_statement (expression_statement (call (attribute (identifier_proc) identifier_proc (identifier_wait) identifier_wait )attribute (argument_list )argument_list )call )expression_statement (return_statement (attribute (identifier_gdb) identifier_gdb (identifier_error) identifier_error )attribute )return_statement )block )function_definition )module
Spawn gdb and attach to a process.
(module (function_definition (function_name_from_yaml) function_name_from_yaml (parameters (identifier_cls) identifier_cls (default_parameter (identifier_file_path) identifier_file_path (None) None )default_parameter )parameters (block (try_statement (block (import_statement (dotted_name (identifier_yaml) identifier_yaml )dotted_name )import_statement )block (except_clause (identifier_ImportError) identifier_ImportError (block (expression_statement (assignment (identifier_yaml) identifier_yaml (None) None )assignment )expression_statement )block )except_clause )try_statement (if_statement (not_operator (identifier_yaml) identifier_yaml )not_operator (block (import_statement (dotted_name (identifier_sys) identifier_sys )dotted_name )import_statement (expression_statement (call (attribute (identifier_sys) identifier_sys (identifier_exit) identifier_exit )attribute (argument_list (concatenated_string (string_'PyYAML is not installed, but is required in order to parse YAML files.') string_'PyYAML is not installed, but is required in order to parse YAML files.' (string_'\nTo install, run:\n$ pip install PyYAML\nor visit') string_'\nTo install, run:\n$ pip install PyYAML\nor visit' (string_' http://pyyaml.org/wiki/PyYAML for instructions.') string_' http://pyyaml.org/wiki/PyYAML for instructions.' )concatenated_string )argument_list )call )expression_statement )block )if_statement (with_statement (with_clause (with_item (as_pattern (call (attribute (identifier_io) identifier_io (identifier_open) identifier_open )attribute (argument_list (identifier_file_path) identifier_file_path (keyword_argument (identifier_encoding) identifier_encoding (call (identifier_text_type) identifier_text_type (argument_list (string_'utf-8') string_'utf-8' )argument_list )call )keyword_argument )argument_list )call (as_pattern_target (identifier_stream) identifier_stream )as_pattern_target )as_pattern )with_item )with_clause (block (expression_statement (assignment (identifier_users_yaml) identifier_users_yaml (call (attribute (identifier_yaml) identifier_yaml (identifier_safe_load) identifier_safe_load )attribute (argument_list (identifier_stream) identifier_stream )argument_list )call )assignment )expression_statement (if_statement (call (identifier_isinstance) identifier_isinstance (argument_list (identifier_users_yaml) identifier_users_yaml (identifier_dict) identifier_dict )argument_list )call (block (return_statement (call (attribute (identifier_cls) identifier_cls (identifier_construct_user_list) identifier_construct_user_list )attribute (argument_list (keyword_argument (identifier_raw_users) identifier_raw_users (call (attribute (identifier_users_yaml) identifier_users_yaml (identifier_get) identifier_get )attribute (argument_list (string_'users') string_'users' )argument_list )call )keyword_argument )argument_list )call )return_statement )block (else_clause (block (raise_statement (call (identifier_ValueError) identifier_ValueError (argument_list (string_'No YAML object could be decoded') string_'No YAML object could be decoded' )argument_list )call )raise_statement )block )else_clause )if_statement )block )with_statement )block )function_definition )module
Create collection from a YAML file.
(module (function_definition (function_name_log_context) function_name_log_context (parameters (identifier_trace_level) identifier_trace_level (identifier_stream) identifier_stream )parameters (block (expression_statement (assignment (identifier_original_trace_level) identifier_original_trace_level (attribute (identifier_DebugInfoHolder) identifier_DebugInfoHolder (identifier_DEBUG_TRACE_LEVEL) identifier_DEBUG_TRACE_LEVEL )attribute )assignment )expression_statement (expression_statement (assignment (identifier_original_stream) identifier_original_stream (attribute (identifier_DebugInfoHolder) identifier_DebugInfoHolder (identifier_DEBUG_STREAM) identifier_DEBUG_STREAM )attribute )assignment )expression_statement (expression_statement (assignment (attribute (identifier_DebugInfoHolder) identifier_DebugInfoHolder (identifier_DEBUG_TRACE_LEVEL) identifier_DEBUG_TRACE_LEVEL )attribute (identifier_trace_level) identifier_trace_level )assignment )expression_statement (expression_statement (assignment (attribute (identifier_DebugInfoHolder) identifier_DebugInfoHolder (identifier_DEBUG_STREAM) identifier_DEBUG_STREAM )attribute (identifier_stream) identifier_stream )assignment )expression_statement (try_statement (block (expression_statement (yield )yield )expression_statement )block (finally_clause (block (expression_statement (assignment (attribute (identifier_DebugInfoHolder) identifier_DebugInfoHolder (identifier_DEBUG_TRACE_LEVEL) identifier_DEBUG_TRACE_LEVEL )attribute (identifier_original_trace_level) identifier_original_trace_level )assignment )expression_statement (expression_statement (assignment (attribute (identifier_DebugInfoHolder) identifier_DebugInfoHolder (identifier_DEBUG_STREAM) identifier_DEBUG_STREAM )attribute (identifier_original_stream) identifier_original_stream )assignment )expression_statement )block )finally_clause )try_statement )block )function_definition )module
To be used to temporarily change the logging settings.
(module (function_definition (function_name_bitdepthof) function_name_bitdepthof (parameters (identifier_pixel) identifier_pixel )parameters (block (expression_statement (assignment (identifier_maxd) identifier_maxd (integer_0) integer_0 )assignment )expression_statement (for_statement (identifier_c) identifier_c (call (attribute (identifier_re) identifier_re (identifier_findall) identifier_findall )attribute (argument_list (string_r'[a-z]\d*') string_r'[a-z]\d*' (identifier_pixel) identifier_pixel )argument_list )call (block (if_statement (comparison_operator (subscript (identifier_c) identifier_c (integer_0) integer_0 )subscript (string_'x') string_'x' )comparison_operator (block (expression_statement (assignment (identifier_maxd) identifier_maxd (call (identifier_max) identifier_max (argument_list (identifier_maxd) identifier_maxd (call (identifier_int) identifier_int (argument_list (subscript (identifier_c) identifier_c (slice (integer_1) integer_1 (colon) colon )slice )subscript )argument_list )call )argument_list )call )assignment )expression_statement )block )if_statement )block )for_statement (return_statement (identifier_maxd) identifier_maxd )return_statement )block )function_definition )module
Return the bitdepth for a Plan9 pixel format string.
(module (function_definition (function_name_cleanup) function_name_cleanup (parameters (identifier_arctic_lib) identifier_arctic_lib (identifier_symbol) identifier_symbol (identifier_version_ids) identifier_version_ids (identifier_versions_coll) identifier_versions_coll (default_parameter (identifier_shas_to_delete) identifier_shas_to_delete (None) None )default_parameter (default_parameter (identifier_pointers_cfgs) identifier_pointers_cfgs (None) None )default_parameter )parameters (block (expression_statement (assignment (identifier_pointers_cfgs) identifier_pointers_cfgs (conditional_expression (call (identifier_set) identifier_set (argument_list (identifier_pointers_cfgs) identifier_pointers_cfgs )argument_list )call (identifier_pointers_cfgs) identifier_pointers_cfgs (call (identifier_set) identifier_set (argument_list )argument_list )call )conditional_expression )assignment )expression_statement (expression_statement (assignment (identifier_collection) identifier_collection (call (attribute (identifier_arctic_lib) identifier_arctic_lib (identifier_get_top_level_collection) identifier_get_top_level_collection )attribute (argument_list )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_version_ids) identifier_version_ids (call (identifier_list) identifier_list (argument_list (identifier_version_ids) identifier_version_ids )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_all_symbol_pointers_cfgs) identifier_all_symbol_pointers_cfgs (call (identifier__get_symbol_pointer_cfgs) identifier__get_symbol_pointer_cfgs (argument_list (identifier_symbol) identifier_symbol (identifier_versions_coll) identifier_versions_coll )argument_list )call )assignment )expression_statement (expression_statement (call (attribute (identifier_all_symbol_pointers_cfgs) identifier_all_symbol_pointers_cfgs (identifier_update) identifier_update )attribute (argument_list (identifier_pointers_cfgs) identifier_pointers_cfgs )argument_list )call )expression_statement (if_statement (boolean_operator (comparison_operator (identifier_all_symbol_pointers_cfgs) identifier_all_symbol_pointers_cfgs (set (attribute (identifier_FwPointersCfg) identifier_FwPointersCfg (identifier_DISABLED) identifier_DISABLED )attribute )set )comparison_operator (not_operator (identifier_all_symbol_pointers_cfgs) identifier_all_symbol_pointers_cfgs )not_operator )boolean_operator (block (expression_statement (call (identifier__cleanup_parent_pointers) identifier__cleanup_parent_pointers (argument_list (identifier_collection) identifier_collection (identifier_symbol) identifier_symbol (identifier_version_ids) identifier_version_ids )argument_list )call )expression_statement (return_statement )return_statement )block )if_statement (if_statement (comparison_operator (attribute (identifier_FwPointersCfg) identifier_FwPointersCfg (identifier_DISABLED) identifier_DISABLED )attribute (identifier_all_symbol_pointers_cfgs) identifier_all_symbol_pointers_cfgs )comparison_operator (block (expression_statement (call (identifier__cleanup_fw_pointers) identifier__cleanup_fw_pointers (argument_list (identifier_collection) identifier_collection (identifier_symbol) identifier_symbol (identifier_version_ids) identifier_version_ids (identifier_versions_coll) identifier_versions_coll (keyword_argument (identifier_shas_to_delete) identifier_shas_to_delete (identifier_shas_to_delete) identifier_shas_to_delete )keyword_argument (keyword_argument (identifier_do_clean) identifier_do_clean (True) True )keyword_argument )argument_list )call )expression_statement (return_statement )return_statement )block )if_statement (expression_statement (call (identifier__cleanup_mixed) identifier__cleanup_mixed (argument_list (identifier_symbol) identifier_symbol (identifier_collection) identifier_collection (identifier_version_ids) identifier_version_ids (identifier_versions_coll) identifier_versions_coll )argument_list )call )expression_statement )block )function_definition )module
Helper method for cleaning up chunks from a version store
(module (function_definition (function_name__check_trim) function_name__check_trim (parameters (identifier_data) identifier_data )parameters (block (expression_statement (assignment (identifier_trim) identifier_trim (call (attribute (subscript (identifier_data) identifier_data (string_"algorithm") string_"algorithm" )subscript (identifier_get) identifier_get )attribute (argument_list (string_"trim_reads") string_"trim_reads" )argument_list )call )assignment )expression_statement (if_statement (identifier_trim) identifier_trim (block (if_statement (boolean_operator (comparison_operator (identifier_trim) identifier_trim (string_"fastp") string_"fastp" )comparison_operator (comparison_operator (call (attribute (subscript (identifier_data) identifier_data (string_"algorithm") string_"algorithm" )subscript (identifier_get) identifier_get )attribute (argument_list (string_"align_split_size") string_"align_split_size" )argument_list )call (False) False )comparison_operator )boolean_operator (block (raise_statement (call (identifier_ValueError) identifier_ValueError (argument_list (binary_operator (string_"In sample %s, `trim_reads: fastp` currently requires `align_split_size: false`") string_"In sample %s, `trim_reads: fastp` currently requires `align_split_size: false`" (parenthesized_expression (call (attribute (identifier_dd) identifier_dd (identifier_get_sample_name) identifier_get_sample_name )attribute (argument_list (identifier_data) identifier_data )argument_list )call )parenthesized_expression )binary_operator )argument_list )call )raise_statement )block )if_statement )block )if_statement )block )function_definition )module
Check for valid values for trim_reads.
(module (function_definition (function_name_complete_media) function_name_complete_media (parameters (identifier_self) identifier_self (identifier_text) identifier_text (identifier_line) identifier_line (identifier_begidx) identifier_begidx (identifier_endidx) identifier_endidx )parameters (block (expression_statement (assignment (identifier_choices) identifier_choices (dictionary (pair (string_'actor') string_'actor' (identifier_query_actors) identifier_query_actors )pair (pair (string_'director') string_'director' (attribute (identifier_TabCompleteExample) identifier_TabCompleteExample (identifier_static_list_directors) identifier_static_list_directors )attribute )pair (pair (string_'movie_file') string_'movie_file' (tuple (attribute (identifier_self) identifier_self (identifier_path_complete) identifier_path_complete )attribute )tuple )pair )dictionary )assignment )expression_statement (expression_statement (assignment (identifier_completer) identifier_completer (call (attribute (identifier_argparse_completer) identifier_argparse_completer (identifier_AutoCompleter) identifier_AutoCompleter )attribute (argument_list (attribute (identifier_TabCompleteExample) identifier_TabCompleteExample (identifier_media_parser) identifier_media_parser )attribute (identifier_self) identifier_self (keyword_argument (identifier_arg_choices) identifier_arg_choices (identifier_choices) identifier_choices )keyword_argument )argument_list )call )assignment )expression_statement (expression_statement (assignment (pattern_list (identifier_tokens) identifier_tokens (identifier__) identifier__ )pattern_list (call (attribute (identifier_self) identifier_self (identifier_tokens_for_completion) identifier_tokens_for_completion )attribute (argument_list (identifier_line) identifier_line (identifier_begidx) identifier_begidx (identifier_endidx) identifier_endidx )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_results) identifier_results (call (attribute (identifier_completer) identifier_completer (identifier_complete_command) identifier_complete_command )attribute (argument_list (identifier_tokens) identifier_tokens (identifier_text) identifier_text (identifier_line) identifier_line (identifier_begidx) identifier_begidx (identifier_endidx) identifier_endidx )argument_list )call )assignment )expression_statement (return_statement (identifier_results) identifier_results )return_statement )block )function_definition )module
Adds tab completion to media
(module (function_definition (function_name__output_work) function_name__output_work (parameters (identifier_self) identifier_self (identifier_work) identifier_work (identifier_root) identifier_root )parameters (block (expression_statement (assignment (identifier_output_filename) identifier_output_filename (call (attribute (attribute (identifier_os) identifier_os (identifier_path) identifier_path )attribute (identifier_join) identifier_join )attribute (argument_list (attribute (identifier_self) identifier_self (identifier__output_dir) identifier__output_dir )attribute (identifier_work) identifier_work )argument_list )call )assignment )expression_statement (expression_statement (assignment (identifier_tree) identifier_tree (call (attribute (identifier_etree) identifier_etree (identifier_ElementTree) identifier_ElementTree )attribute (argument_list (identifier_root) identifier_root )argument_list )call )assignment )expression_statement (expression_statement (call (attribute (identifier_tree) identifier_tree (identifier_write) identifier_write )attribute (argument_list (identifier_output_filename) identifier_output_filename (keyword_argument (identifier_encoding) identifier_encoding (string_'utf-8') string_'utf-8' )keyword_argument (keyword_argument (identifier_pretty_print) identifier_pretty_print (True) True )keyword_argument )argument_list )call )expression_statement )block )function_definition )module
Saves the TEI XML document `root` at the path `work`.
(module (function_definition (function_name_schedule_ping_frequency) function_name_schedule_ping_frequency (parameters (identifier_self) identifier_self )parameters (block (expression_statement (string_"Send a ping message to slack every 20 seconds") string_"Send a ping message to slack every 20 seconds" )expression_statement (expression_statement (assignment (identifier_ping) identifier_ping (call (identifier_crontab) identifier_crontab (argument_list (string_'* * * * * */20') string_'* * * * * */20' (keyword_argument (identifier_func) identifier_func (attribute (identifier_self) identifier_self (identifier_send_ping) identifier_send_ping )attribute )keyword_argument (keyword_argument (identifier_start) identifier_start (False) False )keyword_argument )argument_list )call )assignment )expression_statement (expression_statement (call (attribute (identifier_ping) identifier_ping (identifier_start) identifier_start )attribute (argument_list )argument_list )call )expression_statement )block )function_definition )module
Send a ping message to slack every 20 seconds
(module (function_definition (function_name_getDefaultItems) function_name_getDefaultItems (parameters (identifier_self) identifier_self )parameters (block (expression_statement (assignment (identifier_plugins) identifier_plugins (list (call (identifier_InspectorRegItem) identifier_InspectorRegItem (argument_list (identifier_DEFAULT_INSPECTOR) identifier_DEFAULT_INSPECTOR (string_'argos.inspector.qtplugins.table.TableInspector') string_'argos.inspector.qtplugins.table.TableInspector' )argument_list )call (call (identifier_InspectorRegItem) identifier_InspectorRegItem (argument_list (string_'Qt/Text') string_'Qt/Text' (string_'argos.inspector.qtplugins.text.TextInspector') string_'argos.inspector.qtplugins.text.TextInspector' )argument_list )call (call (identifier_InspectorRegItem) identifier_InspectorRegItem (argument_list (string_'PyQtGraph/1D Line Plot') string_'PyQtGraph/1D Line Plot' (string_'argos.inspector.pgplugins.lineplot1d.PgLinePlot1d') string_'argos.inspector.pgplugins.lineplot1d.PgLinePlot1d' )argument_list )call (call (identifier_InspectorRegItem) identifier_InspectorRegItem (argument_list (string_'PyQtGraph/2D Image Plot') string_'PyQtGraph/2D Image Plot' (string_'argos.inspector.pgplugins.imageplot2d.PgImagePlot2d') string_'argos.inspector.pgplugins.imageplot2d.PgImagePlot2d' )argument_list )call )list )assignment )expression_statement (if_statement (identifier_DEBUGGING) identifier_DEBUGGING (block (expression_statement (call (attribute (identifier_plugins) identifier_plugins (identifier_append) identifier_append )attribute (argument_list (call (identifier_InspectorRegItem) identifier_InspectorRegItem (argument_list (string_'Debug Inspector') string_'Debug Inspector' (string_'argos.inspector.debug.DebugInspector') string_'argos.inspector.debug.DebugInspector' )argument_list )call )argument_list )call )expression_statement )block )if_statement (return_statement (identifier_plugins) identifier_plugins )return_statement )block )function_definition )module
Returns a list with the default plugins in the inspector registry.
(module (function_definition (function_name_after_init_app) function_name_after_init_app (parameters (identifier_self) identifier_self (typed_parameter (identifier_app) identifier_app (type (identifier_FlaskUnchained) identifier_FlaskUnchained )type )typed_parameter )parameters (block (import_from_statement (dotted_name (identifier_flask_wtf) identifier_flask_wtf (identifier_csrf) identifier_csrf )dotted_name (dotted_name (identifier_generate_csrf) identifier_generate_csrf )dotted_name )import_from_statement (decorated_definition (decorator (attribute (identifier_app) identifier_app (identifier_after_request) identifier_after_request )attribute )decorator (function_definition (function_name_set_csrf_cookie) function_name_set_csrf_cookie (parameters (identifier_response) identifier_response )parameters (block (if_statement (identifier_response) identifier_response (block (expression_statement (call (attribute (identifier_response) identifier_response (identifier_set_cookie) identifier_set_cookie )attribute (argument_list (string_'csrf_token') string_'csrf_token' (call (identifier_generate_csrf) identifier_generate_csrf (argument_list )argument_list )call )argument_list )call )expression_statement )block )if_statement (return_statement (identifier_response) identifier_response )return_statement )block )function_definition )decorated_definition )block )function_definition )module
Configure an after request hook to set the ``csrf_token`` in the cookie.