sequence stringlengths 731 13.6k | docstring stringlengths 11 171 |
|---|---|
(module
(function_definition
(function_name_accept_transfer) function_name_accept_transfer
(parameters
(identifier_transfer) identifier_transfer
(default_parameter
(identifier_comment) identifier_comment
(None) None
)default_parameter
)parameters
(block
(expression_statement
(call
(attribute
(call
(identifier_TransferResponsePermission) identifier_TransferResponsePermission
(argument_list
(identifier_transfer) identifier_transfer
)argument_list
)call
(identifier_test) identifier_test
)attribute
(argument_list
)argument_list
)call
)expression_statement
(expression_statement
(assignment
(attribute
(identifier_transfer) identifier_transfer
(identifier_responded) identifier_responded
)attribute
(call
(attribute
(identifier_datetime) identifier_datetime
(identifier_now) identifier_now
)attribute
(argument_list
)argument_list
)call
)assignment
)expression_statement
(expression_statement
(assignment
(attribute
(identifier_transfer) identifier_transfer
(identifier_responder) identifier_responder
)attribute
(call
(attribute
(identifier_current_user) identifier_current_user
(identifier__get_current_object) identifier__get_current_object
)attribute
(argument_list
)argument_list
)call
)assignment
)expression_statement
(expression_statement
(assignment
(attribute
(identifier_transfer) identifier_transfer
(identifier_status) identifier_status
)attribute
(string_'accepted') string_'accepted'
)assignment
)expression_statement
(expression_statement
(assignment
(attribute
(identifier_transfer) identifier_transfer
(identifier_response_comment) identifier_response_comment
)attribute
(identifier_comment) identifier_comment
)assignment
)expression_statement
(expression_statement
(call
(attribute
(identifier_transfer) identifier_transfer
(identifier_save) identifier_save
)attribute
(argument_list
)argument_list
)call
)expression_statement
(expression_statement
(assignment
(identifier_subject) identifier_subject
(attribute
(identifier_transfer) identifier_transfer
(identifier_subject) identifier_subject
)attribute
)assignment
)expression_statement
(expression_statement
(assignment
(identifier_recipient) identifier_recipient
(attribute
(identifier_transfer) identifier_transfer
(identifier_recipient) identifier_recipient
)attribute
)assignment
)expression_statement
(if_statement
(call
(identifier_isinstance) identifier_isinstance
(argument_list
(identifier_recipient) identifier_recipient
(identifier_Organization) identifier_Organization
)argument_list
)call
(block
(expression_statement
(assignment
(attribute
(identifier_subject) identifier_subject
(identifier_organization) identifier_organization
)attribute
(identifier_recipient) identifier_recipient
)assignment
)expression_statement
)block
(elif_clause
(call
(identifier_isinstance) identifier_isinstance
(argument_list
(identifier_recipient) identifier_recipient
(identifier_User) identifier_User
)argument_list
)call
(block
(expression_statement
(assignment
(attribute
(identifier_subject) identifier_subject
(identifier_owner) identifier_owner
)attribute
(identifier_recipient) identifier_recipient
)assignment
)expression_statement
)block
)elif_clause
)if_statement
(expression_statement
(call
(attribute
(identifier_subject) identifier_subject
(identifier_save) identifier_save
)attribute
(argument_list
)argument_list
)call
)expression_statement
(return_statement
(identifier_transfer) identifier_transfer
)return_statement
)block
)function_definition
)module | Accept an incoming a transfer request |
(module
(function_definition
(function_name_parse_problem) function_name_parse_problem
(parameters
(identifier_self) identifier_self
(identifier_problem_content) identifier_problem_content
)parameters
(block
(delete_statement
(subscript
(identifier_problem_content) identifier_problem_content
(string_"@order") string_"@order"
)subscript
)delete_statement
(return_statement
(call
(attribute
(call
(attribute
(call
(attribute
(attribute
(identifier_self) identifier_self
(identifier_task_factory) identifier_task_factory
)attribute
(identifier_get_problem_types) identifier_get_problem_types
)attribute
(argument_list
)argument_list
)call
(identifier_get) identifier_get
)attribute
(argument_list
(subscript
(identifier_problem_content) identifier_problem_content
(string_"type") string_"type"
)subscript
)argument_list
)call
(identifier_parse_problem) identifier_parse_problem
)attribute
(argument_list
(identifier_problem_content) identifier_problem_content
)argument_list
)call
)return_statement
)block
)function_definition
)module | Parses a problem, modifying some data |
(module
(function_definition
(function_name_find_by_text) function_name_find_by_text
(parameters
(identifier_text) identifier_text
(default_parameter
(identifier__connection) identifier__connection
(None) None
)default_parameter
(default_parameter
(identifier_page_size) identifier_page_size
(integer_100) integer_100
)default_parameter
(default_parameter
(identifier_page_number) identifier_page_number
(integer_0) integer_0
)default_parameter
(default_parameter
(identifier_sort_by) identifier_sort_by
(attribute
(identifier_enums) identifier_enums
(identifier_DEFAULT_SORT_BY) identifier_DEFAULT_SORT_BY
)attribute
)default_parameter
(default_parameter
(identifier_sort_order) identifier_sort_order
(attribute
(identifier_enums) identifier_enums
(identifier_DEFAULT_SORT_ORDER) identifier_DEFAULT_SORT_ORDER
)attribute
)default_parameter
)parameters
(block
(return_statement
(call
(attribute
(identifier_connection) identifier_connection
(identifier_ItemResultSet) identifier_ItemResultSet
)attribute
(argument_list
(string_'find_videos_by_text') string_'find_videos_by_text'
(identifier_Video) identifier_Video
(identifier__connection) identifier__connection
(identifier_page_size) identifier_page_size
(identifier_page_number) identifier_page_number
(identifier_sort_by) identifier_sort_by
(identifier_sort_order) identifier_sort_order
(keyword_argument
(identifier_text) identifier_text
(identifier_text) identifier_text
)keyword_argument
)argument_list
)call
)return_statement
)block
)function_definition
)module | List videos that match the ``text`` in title or description. |
(module
(function_definition
(function_name_char_range) function_name_char_range
(parameters
(identifier_starting_char) identifier_starting_char
(identifier_ending_char) identifier_ending_char
)parameters
(block
(assert_statement
(call
(identifier_isinstance) identifier_isinstance
(argument_list
(identifier_starting_char) identifier_starting_char
(identifier_str) identifier_str
)argument_list
)call
(string_'char_range: Wrong argument/s type') string_'char_range: Wrong argument/s type'
)assert_statement
(assert_statement
(call
(identifier_isinstance) identifier_isinstance
(argument_list
(identifier_ending_char) identifier_ending_char
(identifier_str) identifier_str
)argument_list
)call
(string_'char_range: Wrong argument/s type') string_'char_range: Wrong argument/s type'
)assert_statement
(for_statement
(identifier_char) identifier_char
(call
(identifier_range) identifier_range
(argument_list
(call
(identifier_ord) identifier_ord
(argument_list
(identifier_starting_char) identifier_starting_char
)argument_list
)call
(binary_operator
(call
(identifier_ord) identifier_ord
(argument_list
(identifier_ending_char) identifier_ending_char
)argument_list
)call
(integer_1) integer_1
)binary_operator
)argument_list
)call
(block
(expression_statement
(yield
(call
(identifier_chr) identifier_chr
(argument_list
(identifier_char) identifier_char
)argument_list
)call
)yield
)expression_statement
)block
)for_statement
)block
)function_definition
)module | Create a range generator for chars |
(module
(function_definition
(function_name_source) function_name_source
(parameters
(identifier_self) identifier_self
(identifier_source) identifier_source
)parameters
(block
(expression_statement
(call
(attribute
(attribute
(identifier_BaseView) identifier_BaseView
(identifier_source) identifier_source
)attribute
(identifier_fset) identifier_fset
)attribute
(argument_list
(identifier_self) identifier_self
(identifier_source) identifier_source
)argument_list
)call
)expression_statement
(if_statement
(attribute
(identifier_self) identifier_self
(identifier_main_pane) identifier_main_pane
)attribute
(block
(expression_statement
(assignment
(attribute
(attribute
(identifier_self) identifier_self
(identifier_main_pane) identifier_main_pane
)attribute
(identifier_object) identifier_object
)attribute
(attribute
(identifier_self) identifier_self
(identifier_contents) identifier_contents
)attribute
)assignment
)expression_statement
(expression_statement
(assignment
(attribute
(attribute
(identifier_self) identifier_self
(identifier_label_pane) identifier_label_pane
)attribute
(identifier_object) identifier_object
)attribute
(attribute
(identifier_self) identifier_self
(identifier_label) identifier_label
)attribute
)assignment
)expression_statement
)block
)if_statement
)block
)function_definition
)module | When the source gets updated, update the pane object |
(module
(function_definition
(function_name_unpack) function_name_unpack
(parameters
(identifier_src_dir) identifier_src_dir
(identifier_dst_dir) identifier_dst_dir
)parameters
(block
(for_statement
(pattern_list
(identifier_dirpath) identifier_dirpath
(identifier_dirnames) identifier_dirnames
(identifier_filenames) identifier_filenames
)pattern_list
(call
(attribute
(identifier_os) identifier_os
(identifier_walk) identifier_walk
)attribute
(argument_list
(identifier_src_dir) identifier_src_dir
)argument_list
)call
(block
(expression_statement
(assignment
(identifier_subdir) identifier_subdir
(call
(attribute
(attribute
(identifier_os) identifier_os
(identifier_path) identifier_path
)attribute
(identifier_relpath) identifier_relpath
)attribute
(argument_list
(identifier_dirpath) identifier_dirpath
(identifier_src_dir) identifier_src_dir
)argument_list
)call
)assignment
)expression_statement
(for_statement
(identifier_f) identifier_f
(identifier_filenames) identifier_filenames
(block
(expression_statement
(assignment
(identifier_src) identifier_src
(call
(attribute
(attribute
(identifier_os) identifier_os
(identifier_path) identifier_path
)attribute
(identifier_join) identifier_join
)attribute
(argument_list
(identifier_dirpath) identifier_dirpath
(identifier_f) identifier_f
)argument_list
)call
)assignment
)expression_statement
(expression_statement
(assignment
(identifier_dst) identifier_dst
(call
(attribute
(attribute
(identifier_os) identifier_os
(identifier_path) identifier_path
)attribute
(identifier_join) identifier_join
)attribute
(argument_list
(identifier_dst_dir) identifier_dst_dir
(identifier_subdir) identifier_subdir
(identifier_f) identifier_f
)argument_list
)call
)assignment
)expression_statement
(expression_statement
(call
(attribute
(identifier_os) identifier_os
(identifier_renames) identifier_renames
)attribute
(argument_list
(identifier_src) identifier_src
(identifier_dst) identifier_dst
)argument_list
)call
)expression_statement
)block
)for_statement
(for_statement
(pattern_list
(identifier_n) identifier_n
(identifier_d) identifier_d
)pattern_list
(call
(identifier_reversed) identifier_reversed
(argument_list
(call
(identifier_list) identifier_list
(argument_list
(call
(identifier_enumerate) identifier_enumerate
(argument_list
(identifier_dirnames) identifier_dirnames
)argument_list
)call
)argument_list
)call
)argument_list
)call
(block
(expression_statement
(assignment
(identifier_src) identifier_src
(call
(attribute
(attribute
(identifier_os) identifier_os
(identifier_path) identifier_path
)attribute
(identifier_join) identifier_join
)attribute
(argument_list
(identifier_dirpath) identifier_dirpath
(identifier_d) identifier_d
)argument_list
)call
)assignment
)expression_statement
(expression_statement
(assignment
(identifier_dst) identifier_dst
(call
(attribute
(attribute
(identifier_os) identifier_os
(identifier_path) identifier_path
)attribute
(identifier_join) identifier_join
)attribute
(argument_list
(identifier_dst_dir) identifier_dst_dir
(identifier_subdir) identifier_subdir
(identifier_d) identifier_d
)argument_list
)call
)assignment
)expression_statement
(if_statement
(not_operator
(call
(attribute
(attribute
(identifier_os) identifier_os
(identifier_path) identifier_path
)attribute
(identifier_exists) identifier_exists
)attribute
(argument_list
(identifier_dst) identifier_dst
)argument_list
)call
)not_operator
(block
(expression_statement
(call
(attribute
(identifier_os) identifier_os
(identifier_renames) identifier_renames
)attribute
(argument_list
(identifier_src) identifier_src
(identifier_dst) identifier_dst
)argument_list
)call
)expression_statement
(delete_statement
(subscript
(identifier_dirnames) identifier_dirnames
(identifier_n) identifier_n
)subscript
)delete_statement
)block
)if_statement
)block
)for_statement
)block
)for_statement
(for_statement
(pattern_list
(identifier_dirpath) identifier_dirpath
(identifier_dirnames) identifier_dirnames
(identifier_filenames) identifier_filenames
)pattern_list
(call
(attribute
(identifier_os) identifier_os
(identifier_walk) identifier_walk
)attribute
(argument_list
(identifier_src_dir) identifier_src_dir
(keyword_argument
(identifier_topdown) identifier_topdown
(True) True
)keyword_argument
)argument_list
)call
(block
(assert_statement
(not_operator
(identifier_filenames) identifier_filenames
)not_operator
)assert_statement
(expression_statement
(call
(attribute
(identifier_os) identifier_os
(identifier_rmdir) identifier_rmdir
)attribute
(argument_list
(identifier_dirpath) identifier_dirpath
)argument_list
)call
)expression_statement
)block
)for_statement
)block
)function_definition
)module | Move everything under `src_dir` to `dst_dir`, and delete the former. |
(module
(function_definition
(function_name_write_remaining) function_name_write_remaining
(parameters
(identifier_self) identifier_self
)parameters
(block
(if_statement
(not_operator
(attribute
(identifier_self) identifier_self
(identifier_results) identifier_results
)attribute
)not_operator
(block
(return_statement
)return_statement
)block
)if_statement
(with_statement
(with_clause
(with_item
(call
(attribute
(identifier_db) identifier_db
(identifier_execution_context) identifier_execution_context
)attribute
(argument_list
)argument_list
)call
)with_item
)with_clause
(block
(with_statement
(with_clause
(with_item
(call
(attribute
(identifier_db) identifier_db
(identifier_atomic) identifier_atomic
)attribute
(argument_list
)argument_list
)call
)with_item
)with_clause
(block
(expression_statement
(call
(attribute
(call
(attribute
(identifier_Result) identifier_Result
(identifier_insert_many) identifier_insert_many
)attribute
(argument_list
(attribute
(identifier_self) identifier_self
(identifier_results) identifier_results
)attribute
)argument_list
)call
(identifier_execute) identifier_execute
)attribute
(argument_list
)argument_list
)call
)expression_statement
)block
)with_statement
)block
)with_statement
(delete_statement
(subscript
(attribute
(identifier_self) identifier_self
(identifier_results) identifier_results
)attribute
(slice
(colon) colon
)slice
)subscript
)delete_statement
)block
)function_definition
)module | Write the remaning stack content |
(module
(function_definition
(function_name_distclean) function_name_distclean
(parameters
(default_parameter
(identifier_ctx) identifier_ctx
(None) None
)default_parameter
)parameters
(block
(global_statement
(identifier_commands) identifier_commands
)global_statement
(expression_statement
(assignment
(identifier_lst) identifier_lst
(call
(attribute
(identifier_os) identifier_os
(identifier_listdir) identifier_listdir
)attribute
(argument_list
(string_'.') string_'.'
)argument_list
)call
)assignment
)expression_statement
(for_statement
(identifier_f) identifier_f
(identifier_lst) identifier_lst
(block
(if_statement
(comparison_operator
(identifier_f) identifier_f
(attribute
(identifier_Options) identifier_Options
(identifier_lockfile) identifier_lockfile
)attribute
)comparison_operator
(block
(try_statement
(block
(expression_statement
(assignment
(identifier_proj) identifier_proj
(call
(attribute
(identifier_Environment) identifier_Environment
(identifier_Environment) identifier_Environment
)attribute
(argument_list
(identifier_f) identifier_f
)argument_list
)call
)assignment
)expression_statement
)block
(except_clause
(block
(expression_statement
(call
(attribute
(identifier_Logs) identifier_Logs
(identifier_warn) identifier_warn
)attribute
(argument_list
(binary_operator
(string_'could not read %r') string_'could not read %r'
(identifier_f) identifier_f
)binary_operator
)argument_list
)call
)expression_statement
(continue_statement
)continue_statement
)block
)except_clause
)try_statement
(try_statement
(block
(expression_statement
(call
(attribute
(identifier_shutil) identifier_shutil
(identifier_rmtree) identifier_rmtree
)attribute
(argument_list
(subscript
(identifier_proj) identifier_proj
(identifier_BLDDIR) identifier_BLDDIR
)subscript
)argument_list
)call
)expression_statement
)block
(except_clause
(identifier_IOError) identifier_IOError
(block
(pass_statement
)pass_statement
)block
)except_clause
(except_clause
(identifier_OSError) identifier_OSError
(identifier_e) identifier_e
(block
(if_statement
(comparison_operator
(attribute
(identifier_e) identifier_e
(identifier_errno) identifier_errno
)attribute
(attribute
(identifier_errno) identifier_errno
(identifier_ENOENT) identifier_ENOENT
)attribute
)comparison_operator
(block
(expression_statement
(call
(attribute
(identifier_Logs) identifier_Logs
(identifier_warn) identifier_warn
)attribute
(argument_list
(binary_operator
(string_'project %r cannot be removed') string_'project %r cannot be removed'
(subscript
(identifier_proj) identifier_proj
(identifier_BLDDIR) identifier_BLDDIR
)subscript
)binary_operator
)argument_list
)call
)expression_statement
)block
)if_statement
)block
)except_clause
)try_statement
(try_statement
(block
(expression_statement
(call
(attribute
(identifier_os) identifier_os
(identifier_remove) identifier_remove
)attribute
(argument_list
(identifier_f) identifier_f
)argument_list
)call
)expression_statement
)block
(except_clause
(identifier_OSError) identifier_OSError
(identifier_e) identifier_e
(block
(if_statement
(comparison_operator
(attribute
(identifier_e) identifier_e
(identifier_errno) identifier_errno
)attribute
(attribute
(identifier_errno) identifier_errno
(identifier_ENOENT) identifier_ENOENT
)attribute
)comparison_operator
(block
(expression_statement
(call
(attribute
(identifier_Logs) identifier_Logs
(identifier_warn) identifier_warn
)attribute
(argument_list
(binary_operator
(string_'file %r cannot be removed') string_'file %r cannot be removed'
(identifier_f) identifier_f
)binary_operator
)argument_list
)call
)expression_statement
)block
)if_statement
)block
)except_clause
)try_statement
)block
)if_statement
(if_statement
(boolean_operator
(not_operator
(identifier_commands) identifier_commands
)not_operator
(call
(attribute
(identifier_f) identifier_f
(identifier_startswith) identifier_startswith
)attribute
(argument_list
(string_'.waf') string_'.waf'
)argument_list
)call
)boolean_operator
(block
(expression_statement
(call
(attribute
(identifier_shutil) identifier_shutil
(identifier_rmtree) identifier_rmtree
)attribute
(argument_list
(identifier_f) identifier_f
(keyword_argument
(identifier_ignore_errors) identifier_ignore_errors
(True) True
)keyword_argument
)argument_list
)call
)expression_statement
)block
)if_statement
)block
)for_statement
)block
)function_definition
)module | removes the build directory |
(module
(function_definition
(function_name__update_questions) function_name__update_questions
(parameters
(identifier_self) identifier_self
)parameters
(block
(if_statement
(call
(attribute
(identifier_self) identifier_self
(identifier_is_simple_section) identifier_is_simple_section
)attribute
(argument_list
)argument_list
)call
(block
(return_statement
)return_statement
)block
)if_statement
(expression_statement
(assignment
(identifier_part_list) identifier_part_list
(call
(attribute
(identifier_self) identifier_self
(identifier__get_parts) identifier__get_parts
)attribute
(argument_list
)argument_list
)call
)assignment
)expression_statement
(if_statement
(comparison_operator
(call
(identifier_len) identifier_len
(argument_list
(identifier_part_list) identifier_part_list
)argument_list
)call
(call
(identifier_len) identifier_len
(argument_list
(subscript
(attribute
(identifier_self) identifier_self
(identifier__my_map) identifier__my_map
)attribute
(string_'assessmentParts') string_'assessmentParts'
)subscript
)argument_list
)call
)comparison_operator
(block
(expression_statement
(call
(attribute
(identifier_self) identifier_self
(identifier__update_assessment_parts_map) identifier__update_assessment_parts_map
)attribute
(argument_list
(identifier_part_list) identifier_part_list
)argument_list
)call
)expression_statement
(expression_statement
(call
(attribute
(identifier_self) identifier_self
(identifier__update_questions_list) identifier__update_questions_list
)attribute
(argument_list
(identifier_part_list) identifier_part_list
)argument_list
)call
)expression_statement
(expression_statement
(call
(attribute
(identifier_self) identifier_self
(identifier__save) identifier__save
)attribute
(argument_list
)argument_list
)call
)expression_statement
)block
)if_statement
)block
)function_definition
)module | Updates questions known to this Section |
(module
(function_definition
(function_name_check_name) function_name_check_name
(parameters
(identifier_name) identifier_name
(identifier_safe_chars) identifier_safe_chars
)parameters
(block
(expression_statement
(assignment
(identifier_regexp) identifier_regexp
(call
(attribute
(identifier_re) identifier_re
(identifier_compile) identifier_compile
)attribute
(argument_list
(call
(attribute
(string_'[^{0}]') string_'[^{0}]'
(identifier_format) identifier_format
)attribute
(argument_list
(identifier_safe_chars) identifier_safe_chars
)argument_list
)call
)argument_list
)call
)assignment
)expression_statement
(if_statement
(call
(attribute
(identifier_regexp) identifier_regexp
(identifier_search) identifier_search
)attribute
(argument_list
(identifier_name) identifier_name
)argument_list
)call
(block
(raise_statement
(call
(identifier_SaltCloudException) identifier_SaltCloudException
(argument_list
(call
(attribute
(concatenated_string
(string_'{0} contains characters not supported by this cloud provider. ') string_'{0} contains characters not supported by this cloud provider. '
(string_'Valid characters are: {1}') string_'Valid characters are: {1}'
)concatenated_string
(identifier_format) identifier_format
)attribute
(argument_list
(identifier_name) identifier_name
(identifier_safe_chars) identifier_safe_chars
)argument_list
)call
)argument_list
)call
)raise_statement
)block
)if_statement
)block
)function_definition
)module | Check whether the specified name contains invalid characters |
(module
(function_definition
(function_name_to) function_name_to
(parameters
(identifier_self) identifier_self
(identifier_unit) identifier_unit
)parameters
(block
(import_from_statement
(dotted_name
(identifier_astropy) identifier_astropy
(identifier_units) identifier_units
)dotted_name
(dotted_name
(identifier_rad) identifier_rad
)dotted_name
)import_from_statement
(return_statement
(call
(attribute
(parenthesized_expression
(binary_operator
(attribute
(identifier_self) identifier_self
(identifier_radians) identifier_radians
)attribute
(identifier_rad) identifier_rad
)binary_operator
)parenthesized_expression
(identifier_to) identifier_to
)attribute
(argument_list
(identifier_unit) identifier_unit
)argument_list
)call
)return_statement
(import_from_statement
(dotted_name
(identifier_astropy) identifier_astropy
(identifier_coordinates) identifier_coordinates
)dotted_name
(dotted_name
(identifier_Angle) identifier_Angle
)dotted_name
)import_from_statement
(import_from_statement
(dotted_name
(identifier_astropy) identifier_astropy
(identifier_units) identifier_units
)dotted_name
(dotted_name
(identifier_rad) identifier_rad
)dotted_name
)import_from_statement
(return_statement
(call
(attribute
(call
(identifier_Angle) identifier_Angle
(argument_list
(attribute
(identifier_self) identifier_self
(identifier_radians) identifier_radians
)attribute
(identifier_rad) identifier_rad
)argument_list
)call
(identifier_to) identifier_to
)attribute
(argument_list
(identifier_unit) identifier_unit
)argument_list
)call
)return_statement
)block
)function_definition
)module | Convert this angle to the given AstroPy unit. |
(module
(function_definition
(function_name_view_global_gmfs) function_name_view_global_gmfs
(parameters
(identifier_token) identifier_token
(identifier_dstore) identifier_dstore
)parameters
(block
(expression_statement
(assignment
(identifier_imtls) identifier_imtls
(attribute
(subscript
(identifier_dstore) identifier_dstore
(string_'oqparam') string_'oqparam'
)subscript
(identifier_imtls) identifier_imtls
)attribute
)assignment
)expression_statement
(expression_statement
(assignment
(identifier_row) identifier_row
(call
(attribute
(subscript
(subscript
(identifier_dstore) identifier_dstore
(string_'gmf_data/data') string_'gmf_data/data'
)subscript
(string_'gmv') string_'gmv'
)subscript
(identifier_mean) identifier_mean
)attribute
(argument_list
(keyword_argument
(identifier_axis) identifier_axis
(integer_0) integer_0
)keyword_argument
)argument_list
)call
)assignment
)expression_statement
(return_statement
(call
(identifier_rst_table) identifier_rst_table
(argument_list
(list
(identifier_row) identifier_row
)list
(keyword_argument
(identifier_header) identifier_header
(identifier_imtls) identifier_imtls
)keyword_argument
)argument_list
)call
)return_statement
)block
)function_definition
)module | Display GMFs averaged on everything for debugging purposes |
(module
(function_definition
(function_name_bind_end) function_name_bind_end
(parameters
(identifier_self) identifier_self
(identifier_stream) identifier_stream
(identifier_future) identifier_future
)parameters
(block
(if_statement
(not_operator
(call
(identifier_isinstance) identifier_isinstance
(argument_list
(identifier_stream) identifier_stream
(identifier_Stream) identifier_Stream
)argument_list
)call
)not_operator
(block
(expression_statement
(call
(attribute
(identifier_future) identifier_future
(identifier_set_result) identifier_set_result
)attribute
(argument_list
(None) None
)argument_list
)call
)expression_statement
)block
(else_clause
(block
(expression_statement
(call
(attribute
(identifier_stream) identifier_stream
(identifier_pipe) identifier_pipe
)attribute
(argument_list
(call
(identifier_TaskEndTransformer) identifier_TaskEndTransformer
(argument_list
(identifier_future) identifier_future
)argument_list
)call
)argument_list
)call
)expression_statement
)block
)else_clause
)if_statement
)block
)function_definition
)module | Bind a 'TaskEndTransformer' to a stream. |
(module
(function_definition
(function_name_find_bar_plot) function_name_find_bar_plot
(parameters
(identifier_ar) identifier_ar
(identifier_nth) identifier_nth
)parameters
(block
(expression_statement
(string_"Find the NTH barplot of the cluster in area AR.") string_"Find the NTH barplot of the cluster in area AR."
)expression_statement
(for_statement
(identifier_plot) identifier_plot
(call
(attribute
(identifier_ar) identifier_ar
(identifier_plots) identifier_plots
)attribute
(argument_list
)argument_list
)call
(block
(if_statement
(boolean_operator
(call
(identifier_isinstance) identifier_isinstance
(argument_list
(identifier_plot) identifier_plot
(identifier_T) identifier_T
)argument_list
)call
(comparison_operator
(subscript
(attribute
(identifier_plot) identifier_plot
(identifier_cluster) identifier_cluster
)attribute
(integer_0) integer_0
)subscript
(identifier_nth) identifier_nth
)comparison_operator
)boolean_operator
(block
(return_statement
(identifier_plot) identifier_plot
)return_statement
)block
)if_statement
)block
)for_statement
(raise_statement
(call
(identifier_Exception) identifier_Exception
(argument_list
(binary_operator
(string_"The %dth bar plot in the cluster not found.") string_"The %dth bar plot in the cluster not found."
(identifier_nth) identifier_nth
)binary_operator
)argument_list
)call
)raise_statement
)block
)function_definition
)module | Find the NTH barplot of the cluster in area AR. |
(module
(function_definition
(function_name__get_data) function_name__get_data
(parameters
(identifier_self) identifier_self
(identifier_id_list) identifier_id_list
(default_parameter
(identifier_format) identifier_format
(string_'MLDataset') string_'MLDataset'
)default_parameter
)parameters
(block
(expression_statement
(assignment
(identifier_format) identifier_format
(call
(attribute
(identifier_format) identifier_format
(identifier_lower) identifier_lower
)attribute
(argument_list
)argument_list
)call
)assignment
)expression_statement
(expression_statement
(assignment
(identifier_features) identifier_features
(call
(identifier_list) identifier_list
(argument_list
)argument_list
)call
)assignment
)expression_statement
(for_statement
(pattern_list
(identifier_modality) identifier_modality
(identifier_data) identifier_data
)pattern_list
(call
(attribute
(attribute
(identifier_self) identifier_self
(identifier__modalities) identifier__modalities
)attribute
(identifier_items) identifier_items
)attribute
(argument_list
)argument_list
)call
(block
(if_statement
(comparison_operator
(identifier_format) identifier_format
(tuple
(string_'ndarray') string_'ndarray'
(string_'data_matrix') string_'data_matrix'
)tuple
)comparison_operator
(block
(expression_statement
(assignment
(identifier_subset) identifier_subset
(call
(attribute
(identifier_np) identifier_np
(identifier_array) identifier_array
)attribute
(argument_list
(call
(call
(identifier_itemgetter) identifier_itemgetter
(argument_list
(list_splat
(identifier_id_list) identifier_id_list
)list_splat
)argument_list
)call
(argument_list
(identifier_data) identifier_data
)argument_list
)call
)argument_list
)call
)assignment
)expression_statement
)block
(elif_clause
(comparison_operator
(identifier_format) identifier_format
(tuple
(string_'mldataset') string_'mldataset'
(string_'pyradigm') string_'pyradigm'
)tuple
)comparison_operator
(block
(expression_statement
(assignment
(identifier_subset) identifier_subset
(call
(attribute
(attribute
(identifier_self) identifier_self
(identifier__dataset) identifier__dataset
)attribute
(identifier_get_subset) identifier_get_subset
)attribute
(argument_list
(identifier_id_list) identifier_id_list
)argument_list
)call
)assignment
)expression_statement
(expression_statement
(assignment
(attribute
(identifier_subset) identifier_subset
(identifier_data) identifier_data
)attribute
(dictionary_comprehension
(pair
(identifier_id_) identifier_id_
(subscript
(identifier_data) identifier_data
(identifier_id_) identifier_id_
)subscript
)pair
(for_in_clause
(identifier_id_) identifier_id_
(identifier_id_list) identifier_id_list
)for_in_clause
)dictionary_comprehension
)assignment
)expression_statement
)block
)elif_clause
(else_clause
(block
(raise_statement
(call
(identifier_ValueError) identifier_ValueError
(argument_list
(concatenated_string
(string_'Invalid output format - choose only one of ') string_'Invalid output format - choose only one of '
(string_'MLDataset or data_matrix') string_'MLDataset or data_matrix'
)concatenated_string
)argument_list
)call
)raise_statement
)block
)else_clause
)if_statement
(expression_statement
(call
(attribute
(identifier_features) identifier_features
(identifier_append) identifier_append
)attribute
(argument_list
(identifier_subset) identifier_subset
)argument_list
)call
)expression_statement
)block
)for_statement
(return_statement
(identifier_features) identifier_features
)return_statement
)block
)function_definition
)module | Returns the data, from all modalities, for a given list of IDs |
(module
(function_definition
(function_name_slistStr) function_name_slistStr
(parameters
(identifier_slist) identifier_slist
)parameters
(block
(expression_statement
(assignment
(identifier_slist) identifier_slist
(call
(identifier__fixSlist) identifier__fixSlist
(argument_list
(identifier_slist) identifier_slist
)argument_list
)call
)assignment
)expression_statement
(expression_statement
(assignment
(identifier_string) identifier_string
(call
(attribute
(string_':') string_':'
(identifier_join) identifier_join
)attribute
(argument_list
(list_comprehension
(binary_operator
(string_'%02d') string_'%02d'
(identifier_x) identifier_x
)binary_operator
(for_in_clause
(identifier_x) identifier_x
(subscript
(identifier_slist) identifier_slist
(slice
(integer_1) integer_1
(colon) colon
)slice
)subscript
)for_in_clause
)list_comprehension
)argument_list
)call
)assignment
)expression_statement
(return_statement
(binary_operator
(subscript
(identifier_slist) identifier_slist
(integer_0) integer_0
)subscript
(identifier_string) identifier_string
)binary_operator
)return_statement
)block
)function_definition
)module | Converts signed list to angle string. |
(module
(function_definition
(function_name_getvariable) function_name_getvariable
(parameters
(identifier_name) identifier_name
)parameters
(block
(import_statement
(dotted_name
(identifier_inspect) identifier_inspect
)dotted_name
)import_statement
(expression_statement
(assignment
(identifier_fr) identifier_fr
(call
(attribute
(identifier_inspect) identifier_inspect
(identifier_currentframe) identifier_currentframe
)attribute
(argument_list
)argument_list
)call
)assignment
)expression_statement
(try_statement
(block
(while_statement
(identifier_fr) identifier_fr
(block
(expression_statement
(assignment
(identifier_fr) identifier_fr
(attribute
(identifier_fr) identifier_fr
(identifier_f_back) identifier_f_back
)attribute
)assignment
)expression_statement
(expression_statement
(assignment
(identifier_vars) identifier_vars
(attribute
(identifier_fr) identifier_fr
(identifier_f_locals) identifier_f_locals
)attribute
)assignment
)expression_statement
(if_statement
(comparison_operator
(identifier_name) identifier_name
(identifier_vars) identifier_vars
)comparison_operator
(block
(return_statement
(subscript
(identifier_vars) identifier_vars
(identifier_name) identifier_name
)subscript
)return_statement
)block
)if_statement
)block
)while_statement
)block
(except_clause
(block
(pass_statement
)pass_statement
)block
)except_clause
)try_statement
(return_statement
(None) None
)return_statement
)block
)function_definition
)module | Get the value of a local variable somewhere in the call stack. |
(module
(function_definition
(function_name_clear_roles) function_name_clear_roles
(parameters
(identifier_user) identifier_user
)parameters
(block
(expression_statement
(assignment
(identifier_roles) identifier_roles
(call
(identifier_get_user_roles) identifier_get_user_roles
(argument_list
(identifier_user) identifier_user
)argument_list
)call
)assignment
)expression_statement
(for_statement
(identifier_role) identifier_role
(identifier_roles) identifier_roles
(block
(expression_statement
(call
(attribute
(identifier_role) identifier_role
(identifier_remove_role_from_user) identifier_remove_role_from_user
)attribute
(argument_list
(identifier_user) identifier_user
)argument_list
)call
)expression_statement
)block
)for_statement
(return_statement
(identifier_roles) identifier_roles
)return_statement
)block
)function_definition
)module | Remove all roles from a user. |
(module
(function_definition
(function_name_count) function_name_count
(parameters
(identifier_self) identifier_self
(identifier_request) identifier_request
(default_parameter
(identifier_filter) identifier_filter
(None) None
)default_parameter
)parameters
(block
(if_statement
(comparison_operator
(identifier_filter) identifier_filter
(None) None
)comparison_operator
(block
(expression_statement
(assignment
(identifier_filter) identifier_filter
(call
(identifier_create_filter) identifier_create_filter
(argument_list
(identifier_request) identifier_request
(attribute
(identifier_self) identifier_self
(identifier_mapped_class) identifier_mapped_class
)attribute
(attribute
(identifier_self) identifier_self
(identifier_geom_attr) identifier_geom_attr
)attribute
)argument_list
)call
)assignment
)expression_statement
)block
)if_statement
(expression_statement
(assignment
(identifier_query) identifier_query
(call
(attribute
(call
(attribute
(identifier_self) identifier_self
(identifier_Session) identifier_Session
)attribute
(argument_list
)argument_list
)call
(identifier_query) identifier_query
)attribute
(argument_list
(attribute
(identifier_self) identifier_self
(identifier_mapped_class) identifier_mapped_class
)attribute
)argument_list
)call
)assignment
)expression_statement
(if_statement
(comparison_operator
(identifier_filter) identifier_filter
(None) None
)comparison_operator
(block
(expression_statement
(assignment
(identifier_query) identifier_query
(call
(attribute
(identifier_query) identifier_query
(identifier_filter) identifier_filter
)attribute
(argument_list
(identifier_filter) identifier_filter
)argument_list
)call
)assignment
)expression_statement
)block
)if_statement
(return_statement
(call
(attribute
(identifier_query) identifier_query
(identifier_count) identifier_count
)attribute
(argument_list
)argument_list
)call
)return_statement
)block
)function_definition
)module | Return the number of records matching the given filter. |
(module
(function_definition
(function_name_next_blocks) function_name_next_blocks
(parameters
(identifier_self) identifier_self
(default_parameter
(identifier_quantity) identifier_quantity
(unary_operator
(integer_1) integer_1
)unary_operator
)default_parameter
)parameters
(block
(expression_statement
(assignment
(identifier_blocks) identifier_blocks
(parenthesized_expression
(call
(attribute
(call
(attribute
(call
(attribute
(attribute
(identifier_EighthBlock) identifier_EighthBlock
(identifier_objects) identifier_objects
)attribute
(identifier_get_blocks_this_year) identifier_get_blocks_this_year
)attribute
(argument_list
)argument_list
)call
(identifier_order_by) identifier_order_by
)attribute
(argument_list
(string_"date") string_"date"
(string_"block_letter") string_"block_letter"
)argument_list
)call
(identifier_filter) identifier_filter
)attribute
(argument_list
(binary_operator
(call
(identifier_Q) identifier_Q
(argument_list
(keyword_argument
(identifier_date__gt) identifier_date__gt
(attribute
(identifier_self) identifier_self
(identifier_date) identifier_date
)attribute
)keyword_argument
)argument_list
)call
(parenthesized_expression
(binary_operator
(call
(identifier_Q) identifier_Q
(argument_list
(keyword_argument
(identifier_date) identifier_date
(attribute
(identifier_self) identifier_self
(identifier_date) identifier_date
)attribute
)keyword_argument
)argument_list
)call
(call
(identifier_Q) identifier_Q
(argument_list
(keyword_argument
(identifier_block_letter__gt) identifier_block_letter__gt
(attribute
(identifier_self) identifier_self
(identifier_block_letter) identifier_block_letter
)attribute
)keyword_argument
)argument_list
)call
)binary_operator
)parenthesized_expression
)binary_operator
)argument_list
)call
)parenthesized_expression
)assignment
)expression_statement
(if_statement
(comparison_operator
(identifier_quantity) identifier_quantity
(unary_operator
(integer_1) integer_1
)unary_operator
)comparison_operator
(block
(return_statement
(identifier_blocks) identifier_blocks
)return_statement
)block
)if_statement
(return_statement
(subscript
(identifier_blocks) identifier_blocks
(slice
(colon) colon
(identifier_quantity) identifier_quantity
)slice
)subscript
)return_statement
)block
)function_definition
)module | Get the next blocks in order. |
(module
(function_definition
(function_name_config) function_name_config
(parameters
(default_parameter
(identifier_path) identifier_path
(None) None
)default_parameter
(default_parameter
(identifier_root) identifier_root
(None) None
)default_parameter
(default_parameter
(identifier_db) identifier_db
(None) None
)default_parameter
)parameters
(block
(import_statement
(dotted_name
(identifier_ambry) identifier_ambry
(identifier_run) identifier_run
)dotted_name
)import_statement
(return_statement
(call
(attribute
(attribute
(identifier_ambry) identifier_ambry
(identifier_run) identifier_run
)attribute
(identifier_load) identifier_load
)attribute
(argument_list
(keyword_argument
(identifier_path) identifier_path
(identifier_path) identifier_path
)keyword_argument
(keyword_argument
(identifier_root) identifier_root
(identifier_root) identifier_root
)keyword_argument
(keyword_argument
(identifier_db) identifier_db
(identifier_db) identifier_db
)keyword_argument
)argument_list
)call
)return_statement
)block
)function_definition
)module | Return the default run_config object for this installation. |
(module
(function_definition
(function_name__cosmoid_request) function_name__cosmoid_request
(parameters
(identifier_self) identifier_self
(identifier_resource) identifier_resource
(identifier_cosmoid) identifier_cosmoid
(dictionary_splat_pattern
(identifier_kwargs) identifier_kwargs
)dictionary_splat_pattern
)parameters
(block
(expression_statement
(assignment
(identifier_params) identifier_params
(dictionary
(pair
(string_'cosmoid') string_'cosmoid'
(identifier_cosmoid) identifier_cosmoid
)pair
)dictionary
)assignment
)expression_statement
(expression_statement
(call
(attribute
(identifier_params) identifier_params
(identifier_update) identifier_update
)attribute
(argument_list
(identifier_kwargs) identifier_kwargs
)argument_list
)call
)expression_statement
(return_statement
(call
(attribute
(identifier_self) identifier_self
(identifier_make_request) identifier_make_request
)attribute
(argument_list
(identifier_resource) identifier_resource
(identifier_params) identifier_params
)argument_list
)call
)return_statement
)block
)function_definition
)module | Maps to the Generic API method for requests who's only parameter is ``cosmoid`` |
(module
(function_definition
(function_name_all_domain_events) function_name_all_domain_events
(parameters
(identifier_self) identifier_self
)parameters
(block
(for_statement
(identifier_originator_id) identifier_originator_id
(call
(attribute
(attribute
(identifier_self) identifier_self
(identifier_record_manager) identifier_record_manager
)attribute
(identifier_all_sequence_ids) identifier_all_sequence_ids
)attribute
(argument_list
)argument_list
)call
(block
(for_statement
(identifier_domain_event) identifier_domain_event
(call
(attribute
(identifier_self) identifier_self
(identifier_get_domain_events) identifier_get_domain_events
)attribute
(argument_list
(keyword_argument
(identifier_originator_id) identifier_originator_id
(identifier_originator_id) identifier_originator_id
)keyword_argument
(keyword_argument
(identifier_page_size) identifier_page_size
(integer_100) integer_100
)keyword_argument
)argument_list
)call
(block
(expression_statement
(yield
(identifier_domain_event) identifier_domain_event
)yield
)expression_statement
)block
)for_statement
)block
)for_statement
)block
)function_definition
)module | Yields all domain events in the event store. |
(module
(function_definition
(function_name__create_metadata_converter_action) function_name__create_metadata_converter_action
(parameters
(identifier_self) identifier_self
)parameters
(block
(expression_statement
(assignment
(identifier_icon) identifier_icon
(call
(identifier_resources_path) identifier_resources_path
(argument_list
(string_'img') string_'img'
(string_'icons') string_'icons'
(string_'show-metadata-converter.svg') string_'show-metadata-converter.svg'
)argument_list
)call
)assignment
)expression_statement
(expression_statement
(assignment
(attribute
(identifier_self) identifier_self
(identifier_action_metadata_converter) identifier_action_metadata_converter
)attribute
(call
(identifier_QAction) identifier_QAction
(argument_list
(call
(identifier_QIcon) identifier_QIcon
(argument_list
(identifier_icon) identifier_icon
)argument_list
)call
(call
(attribute
(identifier_self) identifier_self
(identifier_tr) identifier_tr
)attribute
(argument_list
(string_'InaSAFE Metadata Converter') string_'InaSAFE Metadata Converter'
)argument_list
)call
(call
(attribute
(attribute
(identifier_self) identifier_self
(identifier_iface) identifier_iface
)attribute
(identifier_mainWindow) identifier_mainWindow
)attribute
(argument_list
)argument_list
)call
)argument_list
)call
)assignment
)expression_statement
(expression_statement
(call
(attribute
(attribute
(identifier_self) identifier_self
(identifier_action_metadata_converter) identifier_action_metadata_converter
)attribute
(identifier_setStatusTip) identifier_setStatusTip
)attribute
(argument_list
(call
(attribute
(identifier_self) identifier_self
(identifier_tr) identifier_tr
)attribute
(argument_list
(string_'Convert metadata from version 4.3 to version 3.5.') string_'Convert metadata from version 4.3 to version 3.5.'
)argument_list
)call
)argument_list
)call
)expression_statement
(expression_statement
(call
(attribute
(attribute
(identifier_self) identifier_self
(identifier_action_metadata_converter) identifier_action_metadata_converter
)attribute
(identifier_setWhatsThis) identifier_setWhatsThis
)attribute
(argument_list
(call
(attribute
(identifier_self) identifier_self
(identifier_tr) identifier_tr
)attribute
(argument_list
(string_'Use this tool to convert metadata 4.3 to version 3.5') string_'Use this tool to convert metadata 4.3 to version 3.5'
)argument_list
)call
)argument_list
)call
)expression_statement
(expression_statement
(call
(attribute
(attribute
(attribute
(identifier_self) identifier_self
(identifier_action_metadata_converter) identifier_action_metadata_converter
)attribute
(identifier_triggered) identifier_triggered
)attribute
(identifier_connect) identifier_connect
)attribute
(argument_list
(attribute
(identifier_self) identifier_self
(identifier_show_metadata_converter) identifier_show_metadata_converter
)attribute
)argument_list
)call
)expression_statement
(expression_statement
(call
(attribute
(identifier_self) identifier_self
(identifier_add_action) identifier_add_action
)attribute
(argument_list
(attribute
(identifier_self) identifier_self
(identifier_action_metadata_converter) identifier_action_metadata_converter
)attribute
(keyword_argument
(identifier_add_to_toolbar) identifier_add_to_toolbar
(attribute
(identifier_self) identifier_self
(identifier_full_toolbar) identifier_full_toolbar
)attribute
)keyword_argument
)argument_list
)call
)expression_statement
)block
)function_definition
)module | Create action for showing metadata converter dialog. |
(module
(function_definition
(function_name__config_params) function_name__config_params
(parameters
(identifier_base_config) identifier_base_config
(identifier_assoc_files) identifier_assoc_files
(identifier_region) identifier_region
(identifier_out_file) identifier_out_file
(identifier_items) identifier_items
)parameters
(block
(expression_statement
(assignment
(identifier_params) identifier_params
(list
)list
)assignment
)expression_statement
(expression_statement
(assignment
(identifier_dbsnp) identifier_dbsnp
(call
(attribute
(identifier_assoc_files) identifier_assoc_files
(identifier_get) identifier_get
)attribute
(argument_list
(string_"dbsnp") string_"dbsnp"
)argument_list
)call
)assignment
)expression_statement
(if_statement
(identifier_dbsnp) identifier_dbsnp
(block
(expression_statement
(augmented_assignment
(identifier_params) identifier_params
(list
(string_"--dbsnp") string_"--dbsnp"
(identifier_dbsnp) identifier_dbsnp
)list
)augmented_assignment
)expression_statement
)block
)if_statement
(expression_statement
(assignment
(identifier_cosmic) identifier_cosmic
(call
(attribute
(identifier_assoc_files) identifier_assoc_files
(identifier_get) identifier_get
)attribute
(argument_list
(string_"cosmic") string_"cosmic"
)argument_list
)call
)assignment
)expression_statement
(if_statement
(identifier_cosmic) identifier_cosmic
(block
(expression_statement
(augmented_assignment
(identifier_params) identifier_params
(list
(string_"--cosmic") string_"--cosmic"
(identifier_cosmic) identifier_cosmic
)list
)augmented_assignment
)expression_statement
)block
)if_statement
(expression_statement
(assignment
(identifier_variant_regions) identifier_variant_regions
(call
(attribute
(identifier_bedutils) identifier_bedutils
(identifier_population_variant_regions) identifier_population_variant_regions
)attribute
(argument_list
(identifier_items) identifier_items
)argument_list
)call
)assignment
)expression_statement
(expression_statement
(assignment
(identifier_region) identifier_region
(call
(identifier_subset_variant_regions) identifier_subset_variant_regions
(argument_list
(identifier_variant_regions) identifier_variant_regions
(identifier_region) identifier_region
(identifier_out_file) identifier_out_file
(identifier_items) identifier_items
)argument_list
)call
)assignment
)expression_statement
(if_statement
(identifier_region) identifier_region
(block
(expression_statement
(augmented_assignment
(identifier_params) identifier_params
(list
(string_"-L") string_"-L"
(call
(attribute
(identifier_bamprep) identifier_bamprep
(identifier_region_to_gatk) identifier_region_to_gatk
)attribute
(argument_list
(identifier_region) identifier_region
)argument_list
)call
(string_"--interval_set_rule") string_"--interval_set_rule"
(string_"INTERSECTION") string_"INTERSECTION"
)list
)augmented_assignment
)expression_statement
)block
)if_statement
(expression_statement
(assignment
(identifier_min_af) identifier_min_af
(call
(attribute
(identifier_tz) identifier_tz
(identifier_get_in) identifier_get_in
)attribute
(argument_list
(list
(string_"algorithm") string_"algorithm"
(string_"min_allele_fraction") string_"min_allele_fraction"
)list
(identifier_base_config) identifier_base_config
)argument_list
)call
)assignment
)expression_statement
(if_statement
(identifier_min_af) identifier_min_af
(block
(expression_statement
(augmented_assignment
(identifier_params) identifier_params
(list
(string_"--minimum_mutation_cell_fraction") string_"--minimum_mutation_cell_fraction"
(binary_operator
(string_"%.2f") string_"%.2f"
(parenthesized_expression
(binary_operator
(identifier_min_af) identifier_min_af
(float_100.0) float_100.0
)binary_operator
)parenthesized_expression
)binary_operator
)list
)augmented_assignment
)expression_statement
)block
)if_statement
(expression_statement
(assignment
(identifier_resources) identifier_resources
(call
(attribute
(identifier_config_utils) identifier_config_utils
(identifier_get_resources) identifier_get_resources
)attribute
(argument_list
(string_"mutect") string_"mutect"
(identifier_base_config) identifier_base_config
)argument_list
)call
)assignment
)expression_statement
(if_statement
(comparison_operator
(call
(attribute
(identifier_resources) identifier_resources
(identifier_get) identifier_get
)attribute
(argument_list
(string_"options") string_"options"
)argument_list
)call
(None) None
)comparison_operator
(block
(expression_statement
(augmented_assignment
(identifier_params) identifier_params
(list_comprehension
(call
(identifier_str) identifier_str
(argument_list
(identifier_x) identifier_x
)argument_list
)call
(for_in_clause
(identifier_x) identifier_x
(call
(attribute
(identifier_resources) identifier_resources
(identifier_get) identifier_get
)attribute
(argument_list
(string_"options") string_"options"
(list
)list
)argument_list
)call
)for_in_clause
)list_comprehension
)augmented_assignment
)expression_statement
)block
)if_statement
(if_statement
(comparison_operator
(string_"--enable_qscore_output") string_"--enable_qscore_output"
(identifier_params) identifier_params
)comparison_operator
(block
(expression_statement
(call
(attribute
(identifier_params) identifier_params
(identifier_append) identifier_append
)attribute
(argument_list
(string_"--enable_qscore_output") string_"--enable_qscore_output"
)argument_list
)call
)expression_statement
)block
)if_statement
(return_statement
(identifier_params) identifier_params
)return_statement
)block
)function_definition
)module | Add parameters based on configuration variables, associated files and genomic regions. |
(module
(function_definition
(function_name__do_connect) function_name__do_connect
(parameters
(identifier_self) identifier_self
)parameters
(block
(expression_statement
(assignment
(pattern_list
(identifier__) identifier__
(attribute
(identifier_self) identifier_self
(identifier__protocol) identifier__protocol
)attribute
)pattern_list
(yield
(call
(attribute
(attribute
(identifier_self) identifier_self
(identifier__loop) identifier__loop
)attribute
(identifier_create_connection) identifier_create_connection
)attribute
(argument_list
(lambda
(call
(identifier_SnapcastProtocol) identifier_SnapcastProtocol
(argument_list
(attribute
(identifier_self) identifier_self
(identifier__callbacks) identifier__callbacks
)attribute
)argument_list
)call
)lambda
(attribute
(identifier_self) identifier_self
(identifier__host) identifier__host
)attribute
(attribute
(identifier_self) identifier_self
(identifier__port) identifier__port
)attribute
)argument_list
)call
)yield
)assignment
)expression_statement
)block
)function_definition
)module | Perform the connection to the server. |
(module
(function_definition
(function_name__diff) function_name__diff
(parameters
(identifier_text_0) identifier_text_0
(identifier_text_1) identifier_text_1
)parameters
(block
(expression_statement
(assignment
(identifier_diff) identifier_diff
(call
(attribute
(identifier_difflib) identifier_difflib
(identifier_ndiff) identifier_ndiff
)attribute
(argument_list
(call
(attribute
(identifier_text_0) identifier_text_0
(identifier_splitlines) identifier_splitlines
)attribute
(argument_list
)argument_list
)call
(call
(attribute
(identifier_text_1) identifier_text_1
(identifier_splitlines) identifier_splitlines
)attribute
(argument_list
)argument_list
)call
)argument_list
)call
)assignment
)expression_statement
(return_statement
(call
(identifier__diff_removed_lines) identifier__diff_removed_lines
(argument_list
(identifier_diff) identifier_diff
)argument_list
)call
)return_statement
)block
)function_definition
)module | Return a diff between two strings. |
(module
(function_definition
(function_name_OnSearch) function_name_OnSearch
(parameters
(identifier_self) identifier_self
(identifier_event) identifier_event
)parameters
(block
(expression_statement
(assignment
(identifier_search_string) identifier_search_string
(call
(attribute
(attribute
(identifier_self) identifier_self
(identifier_search) identifier_search
)attribute
(identifier_GetValue) identifier_GetValue
)attribute
(argument_list
)argument_list
)call
)assignment
)expression_statement
(if_statement
(comparison_operator
(identifier_search_string) identifier_search_string
(attribute
(identifier_self) identifier_self
(identifier_search_history) identifier_search_history
)attribute
)comparison_operator
(block
(expression_statement
(call
(attribute
(attribute
(identifier_self) identifier_self
(identifier_search_history) identifier_search_history
)attribute
(identifier_append) identifier_append
)attribute
(argument_list
(identifier_search_string) identifier_search_string
)argument_list
)call
)expression_statement
)block
)if_statement
(if_statement
(comparison_operator
(call
(identifier_len) identifier_len
(argument_list
(attribute
(identifier_self) identifier_self
(identifier_search_history) identifier_search_history
)attribute
)argument_list
)call
(integer_10) integer_10
)comparison_operator
(block
(expression_statement
(call
(attribute
(attribute
(identifier_self) identifier_self
(identifier_search_history) identifier_search_history
)attribute
(identifier_pop) identifier_pop
)attribute
(argument_list
(integer_0) integer_0
)argument_list
)call
)expression_statement
)block
)if_statement
(expression_statement
(assignment
(attribute
(identifier_self) identifier_self
(identifier_menu) identifier_menu
)attribute
(call
(attribute
(identifier_self) identifier_self
(identifier_make_menu) identifier_make_menu
)attribute
(argument_list
)argument_list
)call
)assignment
)expression_statement
(expression_statement
(call
(attribute
(attribute
(identifier_self) identifier_self
(identifier_search) identifier_search
)attribute
(identifier_SetMenu) identifier_SetMenu
)attribute
(argument_list
(attribute
(identifier_self) identifier_self
(identifier_menu) identifier_menu
)attribute
)argument_list
)call
)expression_statement
(expression_statement
(assignment
(identifier_search_flags) identifier_search_flags
(binary_operator
(attribute
(identifier_self) identifier_self
(identifier_search_options) identifier_search_options
)attribute
(list
(string_"FIND_NEXT") string_"FIND_NEXT"
)list
)binary_operator
)assignment
)expression_statement
(expression_statement
(call
(identifier_post_command_event) identifier_post_command_event
(argument_list
(identifier_self) identifier_self
(attribute
(identifier_self) identifier_self
(identifier_FindMsg) identifier_FindMsg
)attribute
(keyword_argument
(identifier_text) identifier_text
(identifier_search_string) identifier_search_string
)keyword_argument
(keyword_argument
(identifier_flags) identifier_flags
(identifier_search_flags) identifier_search_flags
)keyword_argument
)argument_list
)call
)expression_statement
(expression_statement
(call
(attribute
(attribute
(identifier_self) identifier_self
(identifier_search) identifier_search
)attribute
(identifier_SetFocus) identifier_SetFocus
)attribute
(argument_list
)argument_list
)call
)expression_statement
)block
)function_definition
)module | Event handler for starting the search |
(module
(function_definition
(function_name_split_taf) function_name_split_taf
(parameters
(typed_parameter
(identifier_txt) identifier_txt
(type
(identifier_str) identifier_str
)type
)typed_parameter
)parameters
(type
(list
(identifier_str) identifier_str
)list
)type
(block
(expression_statement
(assignment
(identifier_lines) identifier_lines
(list
)list
)assignment
)expression_statement
(expression_statement
(assignment
(identifier_split) identifier_split
(call
(attribute
(identifier_txt) identifier_txt
(identifier_split) identifier_split
)attribute
(argument_list
)argument_list
)call
)assignment
)expression_statement
(expression_statement
(assignment
(identifier_last_index) identifier_last_index
(integer_0) integer_0
)assignment
)expression_statement
(for_statement
(pattern_list
(identifier_i) identifier_i
(identifier_item) identifier_item
)pattern_list
(call
(identifier_enumerate) identifier_enumerate
(argument_list
(identifier_split) identifier_split
)argument_list
)call
(block
(if_statement
(boolean_operator
(boolean_operator
(call
(identifier_starts_new_line) identifier_starts_new_line
(argument_list
(identifier_item) identifier_item
)argument_list
)call
(comparison_operator
(identifier_i) identifier_i
(integer_0) integer_0
)comparison_operator
)boolean_operator
(not_operator
(call
(attribute
(subscript
(identifier_split) identifier_split
(binary_operator
(identifier_i) identifier_i
(integer_1) integer_1
)binary_operator
)subscript
(identifier_startswith) identifier_startswith
)attribute
(argument_list
(string_'PROB') string_'PROB'
)argument_list
)call
)not_operator
)boolean_operator
(block
(expression_statement
(call
(attribute
(identifier_lines) identifier_lines
(identifier_append) identifier_append
)attribute
(argument_list
(call
(attribute
(string_' ') string_' '
(identifier_join) identifier_join
)attribute
(argument_list
(subscript
(identifier_split) identifier_split
(slice
(identifier_last_index) identifier_last_index
(colon) colon
(identifier_i) identifier_i
)slice
)subscript
)argument_list
)call
)argument_list
)call
)expression_statement
(expression_statement
(assignment
(identifier_last_index) identifier_last_index
(identifier_i) identifier_i
)assignment
)expression_statement
)block
)if_statement
)block
)for_statement
(expression_statement
(call
(attribute
(identifier_lines) identifier_lines
(identifier_append) identifier_append
)attribute
(argument_list
(call
(attribute
(string_' ') string_' '
(identifier_join) identifier_join
)attribute
(argument_list
(subscript
(identifier_split) identifier_split
(slice
(identifier_last_index) identifier_last_index
(colon) colon
)slice
)subscript
)argument_list
)call
)argument_list
)call
)expression_statement
(return_statement
(identifier_lines) identifier_lines
)return_statement
)block
)function_definition
)module | Splits a TAF report into each distinct time period |
(module
(function_definition
(function_name_execute) function_name_execute
(parameters
(identifier_self) identifier_self
(default_parameter
(identifier_array_id) identifier_array_id
(None) None
)default_parameter
(default_parameter
(identifier_machine_name) identifier_machine_name
(None) None
)default_parameter
)parameters
(block
(expression_statement
(assignment
(attribute
(identifier_self) identifier_self
(identifier_status) identifier_status
)attribute
(string_'executing') string_'executing'
)assignment
)expression_statement
(if_statement
(comparison_operator
(identifier_array_id) identifier_array_id
(None) None
)comparison_operator
(block
(for_statement
(identifier_array_job) identifier_array_job
(attribute
(identifier_self) identifier_self
(identifier_array) identifier_array
)attribute
(block
(if_statement
(comparison_operator
(attribute
(identifier_array_job) identifier_array_job
(identifier_id) identifier_id
)attribute
(identifier_array_id) identifier_array_id
)comparison_operator
(block
(expression_statement
(assignment
(attribute
(identifier_array_job) identifier_array_job
(identifier_status) identifier_status
)attribute
(string_'executing') string_'executing'
)assignment
)expression_statement
(if_statement
(comparison_operator
(identifier_machine_name) identifier_machine_name
(None) None
)comparison_operator
(block
(expression_statement
(assignment
(attribute
(identifier_array_job) identifier_array_job
(identifier_machine_name) identifier_machine_name
)attribute
(identifier_machine_name) identifier_machine_name
)assignment
)expression_statement
(expression_statement
(assignment
(attribute
(identifier_array_job) identifier_array_job
(identifier_start_time) identifier_start_time
)attribute
(call
(attribute
(identifier_datetime) identifier_datetime
(identifier_now) identifier_now
)attribute
(argument_list
)argument_list
)call
)assignment
)expression_statement
)block
)if_statement
)block
)if_statement
)block
)for_statement
)block
(elif_clause
(comparison_operator
(identifier_machine_name) identifier_machine_name
(None) None
)comparison_operator
(block
(expression_statement
(assignment
(attribute
(identifier_self) identifier_self
(identifier_machine_name) identifier_machine_name
)attribute
(identifier_machine_name) identifier_machine_name
)assignment
)expression_statement
)block
)elif_clause
)if_statement
(if_statement
(comparison_operator
(attribute
(identifier_self) identifier_self
(identifier_start_time) identifier_start_time
)attribute
(None) None
)comparison_operator
(block
(expression_statement
(assignment
(attribute
(identifier_self) identifier_self
(identifier_start_time) identifier_start_time
)attribute
(call
(attribute
(identifier_datetime) identifier_datetime
(identifier_now) identifier_now
)attribute
(argument_list
)argument_list
)call
)assignment
)expression_statement
)block
)if_statement
(for_statement
(identifier_job) identifier_job
(call
(attribute
(identifier_self) identifier_self
(identifier_get_jobs_we_wait_for) identifier_get_jobs_we_wait_for
)attribute
(argument_list
)argument_list
)call
(block
(if_statement
(boolean_operator
(attribute
(identifier_job) identifier_job
(identifier_array) identifier_array
)attribute
(comparison_operator
(attribute
(identifier_job) identifier_job
(identifier_status) identifier_status
)attribute
(string_'executing') string_'executing'
)comparison_operator
)boolean_operator
(block
(expression_statement
(call
(attribute
(identifier_job) identifier_job
(identifier_finish) identifier_finish
)attribute
(argument_list
(integer_0) integer_0
(unary_operator
(integer_1) integer_1
)unary_operator
)argument_list
)call
)expression_statement
)block
)if_statement
)block
)for_statement
)block
)function_definition
)module | Sets the status of this job to 'executing'. |
(module
(function_definition
(function_name_check_coverage) function_name_check_coverage
(parameters
)parameters
(block
(with_statement
(with_clause
(with_item
(call
(identifier_lcd) identifier_lcd
(argument_list
(attribute
(identifier_settings) identifier_settings
(identifier_LOCAL_COVERAGE_PATH) identifier_LOCAL_COVERAGE_PATH
)attribute
)argument_list
)call
)with_item
)with_clause
(block
(expression_statement
(assignment
(identifier_total_line) identifier_total_line
(call
(identifier_local) identifier_local
(argument_list
(string_'grep -n Total index.html') string_'grep -n Total index.html'
(keyword_argument
(identifier_capture) identifier_capture
(True) True
)keyword_argument
)argument_list
)call
)assignment
)expression_statement
(expression_statement
(assignment
(identifier_match) identifier_match
(call
(attribute
(identifier_re) identifier_re
(identifier_search) identifier_search
)attribute
(argument_list
(string_r'^(\d+):') string_r'^(\d+):'
(identifier_total_line) identifier_total_line
)argument_list
)call
)assignment
)expression_statement
(expression_statement
(assignment
(identifier_total_line_number) identifier_total_line_number
(call
(identifier_int) identifier_int
(argument_list
(subscript
(call
(attribute
(identifier_match) identifier_match
(identifier_groups) identifier_groups
)attribute
(argument_list
)argument_list
)call
(integer_0) integer_0
)subscript
)argument_list
)call
)assignment
)expression_statement
(expression_statement
(assignment
(identifier_percentage_line_number) identifier_percentage_line_number
(binary_operator
(identifier_total_line_number) identifier_total_line_number
(integer_5) integer_5
)binary_operator
)assignment
)expression_statement
(expression_statement
(assignment
(identifier_percentage_line) identifier_percentage_line
(call
(identifier_local) identifier_local
(argument_list
(call
(attribute
(string_'awk NR=={0} index.html') string_'awk NR=={0} index.html'
(identifier_format) identifier_format
)attribute
(argument_list
(identifier_percentage_line_number) identifier_percentage_line_number
)argument_list
)call
(keyword_argument
(identifier_capture) identifier_capture
(True) True
)keyword_argument
)argument_list
)call
)assignment
)expression_statement
(expression_statement
(assignment
(identifier_match) identifier_match
(call
(attribute
(identifier_re) identifier_re
(identifier_search) identifier_search
)attribute
(argument_list
(string_r'(\d.+)%') string_r'(\d.+)%'
(identifier_percentage_line) identifier_percentage_line
)argument_list
)call
)assignment
)expression_statement
(try_statement
(block
(expression_statement
(assignment
(identifier_percentage) identifier_percentage
(call
(identifier_float) identifier_float
(argument_list
(subscript
(call
(attribute
(identifier_match) identifier_match
(identifier_groups) identifier_groups
)attribute
(argument_list
)argument_list
)call
(integer_0) integer_0
)subscript
)argument_list
)call
)assignment
)expression_statement
)block
(except_clause
(identifier_ValueError) identifier_ValueError
(block
(expression_statement
(assignment
(identifier_match) identifier_match
(call
(attribute
(identifier_re) identifier_re
(identifier_search) identifier_search
)attribute
(argument_list
(string_r'(\d+)%') string_r'(\d+)%'
(identifier_percentage_line) identifier_percentage_line
)argument_list
)call
)assignment
)expression_statement
(expression_statement
(assignment
(identifier_percentage) identifier_percentage
(call
(identifier_float) identifier_float
(argument_list
(subscript
(call
(attribute
(identifier_match) identifier_match
(identifier_groups) identifier_groups
)attribute
(argument_list
)argument_list
)call
(integer_0) integer_0
)subscript
)argument_list
)call
)assignment
)expression_statement
)block
)except_clause
)try_statement
)block
)with_statement
(if_statement
(comparison_operator
(identifier_percentage) identifier_percentage
(integer_100) integer_100
)comparison_operator
(block
(expression_statement
(call
(identifier_abort) identifier_abort
(argument_list
(call
(identifier_red) identifier_red
(argument_list
(call
(attribute
(string_'Coverage is {0}%') string_'Coverage is {0}%'
(identifier_format) identifier_format
)attribute
(argument_list
(identifier_percentage) identifier_percentage
)argument_list
)call
)argument_list
)call
)argument_list
)call
)expression_statement
)block
)if_statement
(expression_statement
(call
(identifier_print) identifier_print
(argument_list
(call
(identifier_green) identifier_green
(argument_list
(call
(attribute
(string_'Coverage is {0}%') string_'Coverage is {0}%'
(identifier_format) identifier_format
)attribute
(argument_list
(identifier_percentage) identifier_percentage
)argument_list
)call
)argument_list
)call
)argument_list
)call
)expression_statement
)block
)function_definition
)module | Checks if the coverage is 100%. |
(module
(function_definition
(function_name__get_image_numpy_dtype) function_name__get_image_numpy_dtype
(parameters
(identifier_self) identifier_self
)parameters
(block
(try_statement
(block
(expression_statement
(assignment
(identifier_ftype) identifier_ftype
(subscript
(attribute
(identifier_self) identifier_self
(identifier__info) identifier__info
)attribute
(string_'img_equiv_type') string_'img_equiv_type'
)subscript
)assignment
)expression_statement
(expression_statement
(assignment
(identifier_npy_type) identifier_npy_type
(subscript
(identifier__image_bitpix2npy) identifier__image_bitpix2npy
(identifier_ftype) identifier_ftype
)subscript
)assignment
)expression_statement
)block
(except_clause
(identifier_KeyError) identifier_KeyError
(block
(raise_statement
(call
(identifier_KeyError) identifier_KeyError
(argument_list
(binary_operator
(string_"unsupported fits data type: %d") string_"unsupported fits data type: %d"
(identifier_ftype) identifier_ftype
)binary_operator
)argument_list
)call
)raise_statement
)block
)except_clause
)try_statement
(return_statement
(identifier_npy_type) identifier_npy_type
)return_statement
)block
)function_definition
)module | Get the numpy dtype for the image |
(module
(function_definition
(function_name_stem) function_name_stem
(parameters
(identifier_self) identifier_self
)parameters
(block
(expression_statement
(assignment
(identifier_name) identifier_name
(attribute
(identifier_self) identifier_self
(identifier_name) identifier_name
)attribute
)assignment
)expression_statement
(expression_statement
(assignment
(identifier_i) identifier_i
(call
(attribute
(identifier_name) identifier_name
(identifier_rfind) identifier_rfind
)attribute
(argument_list
(string_'.') string_'.'
)argument_list
)call
)assignment
)expression_statement
(if_statement
(comparison_operator
(integer_0) integer_0
(identifier_i) identifier_i
(binary_operator
(call
(identifier_len) identifier_len
(argument_list
(identifier_name) identifier_name
)argument_list
)call
(integer_1) integer_1
)binary_operator
)comparison_operator
(block
(return_statement
(subscript
(identifier_name) identifier_name
(slice
(colon) colon
(identifier_i) identifier_i
)slice
)subscript
)return_statement
)block
(else_clause
(block
(return_statement
(identifier_name) identifier_name
)return_statement
)block
)else_clause
)if_statement
)block
)function_definition
)module | The final path component, minus its last suffix. |
(module
(function_definition
(function_name_wr_hdrs) function_name_wr_hdrs
(parameters
(identifier_self) identifier_self
(identifier_worksheet) identifier_worksheet
(identifier_row_idx) identifier_row_idx
)parameters
(block
(for_statement
(pattern_list
(identifier_col_idx) identifier_col_idx
(identifier_hdr) identifier_hdr
)pattern_list
(call
(identifier_enumerate) identifier_enumerate
(argument_list
(attribute
(identifier_self) identifier_self
(identifier_hdrs) identifier_hdrs
)attribute
)argument_list
)call
(block
(expression_statement
(call
(attribute
(identifier_worksheet) identifier_worksheet
(identifier_write) identifier_write
)attribute
(argument_list
(identifier_row_idx) identifier_row_idx
(identifier_col_idx) identifier_col_idx
(identifier_hdr) identifier_hdr
(attribute
(identifier_self) identifier_self
(identifier_fmt_hdr) identifier_fmt_hdr
)attribute
)argument_list
)call
)expression_statement
)block
)for_statement
(expression_statement
(augmented_assignment
(identifier_row_idx) identifier_row_idx
(integer_1) integer_1
)augmented_assignment
)expression_statement
(return_statement
(identifier_row_idx) identifier_row_idx
)return_statement
)block
)function_definition
)module | Print row of column headers |
(module
(function_definition
(function_name_append) function_name_append
(parameters
(identifier_self) identifier_self
(identifier_item) identifier_item
)parameters
(block
(if_statement
(not_operator
(call
(identifier_isinstance) identifier_isinstance
(argument_list
(identifier_item) identifier_item
(identifier_str) identifier_str
)argument_list
)call
)not_operator
(block
(raise_statement
(call
(identifier_TypeError) identifier_TypeError
(argument_list
(binary_operator
(concatenated_string
(string_'Members of this object must be strings. ') string_'Members of this object must be strings. '
(string_'You supplied \"%s\"') string_'You supplied \"%s\"'
)concatenated_string
(call
(identifier_type) identifier_type
(argument_list
(identifier_item) identifier_item
)argument_list
)call
)binary_operator
)argument_list
)call
)raise_statement
)block
)if_statement
(expression_statement
(call
(attribute
(identifier_list) identifier_list
(identifier_append) identifier_append
)attribute
(argument_list
(identifier_self) identifier_self
(identifier_item) identifier_item
)argument_list
)call
)expression_statement
)block
)function_definition
)module | Adds an item to the list and checks it's a string. |
(module
(function_definition
(function_name_ask_visualization) function_name_ask_visualization
(parameters
)parameters
(block
(expression_statement
(call
(identifier_printDebug) identifier_printDebug
(argument_list
(string_"Please choose an output format for the ontology visualization: (q=quit)\n") string_"Please choose an output format for the ontology visualization: (q=quit)\n"
(string_"important") string_"important"
)argument_list
)call
)expression_statement
(while_statement
(True) True
(block
(expression_statement
(assignment
(identifier_text) identifier_text
(string_"") string_""
)assignment
)expression_statement
(for_statement
(identifier_viz) identifier_viz
(identifier_VISUALIZATIONS_LIST) identifier_VISUALIZATIONS_LIST
(block
(expression_statement
(augmented_assignment
(identifier_text) identifier_text
(binary_operator
(string_"%d) %s\n") string_"%d) %s\n"
(tuple
(binary_operator
(call
(attribute
(identifier_VISUALIZATIONS_LIST) identifier_VISUALIZATIONS_LIST
(identifier_index) identifier_index
)attribute
(argument_list
(identifier_viz) identifier_viz
)argument_list
)call
(integer_1) integer_1
)binary_operator
(subscript
(identifier_viz) identifier_viz
(string_'Title') string_'Title'
)subscript
)tuple
)binary_operator
)augmented_assignment
)expression_statement
)block
)for_statement
(expression_statement
(assignment
(identifier_var) identifier_var
(call
(identifier_input) identifier_input
(argument_list
(binary_operator
(identifier_text) identifier_text
(string_">") string_">"
)binary_operator
)argument_list
)call
)assignment
)expression_statement
(if_statement
(comparison_operator
(identifier_var) identifier_var
(string_"q") string_"q"
)comparison_operator
(block
(return_statement
(string_"") string_""
)return_statement
)block
(else_clause
(block
(try_statement
(block
(expression_statement
(assignment
(identifier_n) identifier_n
(binary_operator
(call
(identifier_int) identifier_int
(argument_list
(identifier_var) identifier_var
)argument_list
)call
(integer_1) integer_1
)binary_operator
)assignment
)expression_statement
(expression_statement
(assignment
(identifier_test) identifier_test
(subscript
(identifier_VISUALIZATIONS_LIST) identifier_VISUALIZATIONS_LIST
(identifier_n) identifier_n
)subscript
)assignment
)expression_statement
(return_statement
(identifier_n) identifier_n
)return_statement
)block
(except_clause
(block
(expression_statement
(call
(identifier_printDebug) identifier_printDebug
(argument_list
(string_"Invalid selection. Please try again.") string_"Invalid selection. Please try again."
(string_"red") string_"red"
)argument_list
)call
)expression_statement
(continue_statement
)continue_statement
)block
)except_clause
)try_statement
)block
)else_clause
)if_statement
)block
)while_statement
)block
)function_definition
)module | ask user which viz output to use |
(module
(function_definition
(function_name_force_bytes) function_name_force_bytes
(parameters
(identifier_value) identifier_value
)parameters
(block
(if_statement
(identifier_IS_PY3) identifier_IS_PY3
(block
(if_statement
(call
(identifier_isinstance) identifier_isinstance
(argument_list
(identifier_value) identifier_value
(identifier_str) identifier_str
)argument_list
)call
(block
(expression_statement
(assignment
(identifier_value) identifier_value
(call
(attribute
(identifier_value) identifier_value
(identifier_encode) identifier_encode
)attribute
(argument_list
(string_'utf-8') string_'utf-8'
(string_'backslashreplace') string_'backslashreplace'
)argument_list
)call
)assignment
)expression_statement
)block
)if_statement
)block
(else_clause
(block
(if_statement
(call
(identifier_isinstance) identifier_isinstance
(argument_list
(identifier_value) identifier_value
(identifier_unicode) identifier_unicode
)argument_list
)call
(block
(expression_statement
(assignment
(identifier_value) identifier_value
(call
(attribute
(identifier_value) identifier_value
(identifier_encode) identifier_encode
)attribute
(argument_list
(string_'utf-8') string_'utf-8'
)argument_list
)call
)assignment
)expression_statement
)block
)if_statement
)block
)else_clause
)if_statement
(return_statement
(identifier_value) identifier_value
)return_statement
)block
)function_definition
)module | Forces a Unicode string to become a bytestring. |
(module
(function_definition
(function_name_stem) function_name_stem
(parameters
(identifier_self) identifier_self
(identifier_word) identifier_word
)parameters
(block
(if_statement
(attribute
(identifier_self) identifier_self
(identifier_stemmer) identifier_stemmer
)attribute
(block
(return_statement
(call
(identifier_unicode_to_ascii) identifier_unicode_to_ascii
(argument_list
(call
(attribute
(attribute
(identifier_self) identifier_self
(identifier__stemmer) identifier__stemmer
)attribute
(identifier_stem) identifier_stem
)attribute
(argument_list
(identifier_word) identifier_word
)argument_list
)call
)argument_list
)call
)return_statement
)block
(else_clause
(block
(return_statement
(identifier_word) identifier_word
)return_statement
)block
)else_clause
)if_statement
)block
)function_definition
)module | Perform stemming on an input word. |
(module
(function_definition
(function_name_write_data) function_name_write_data
(parameters
(identifier_self) identifier_self
(identifier_write_finished_cb) identifier_write_finished_cb
)parameters
(block
(expression_statement
(assignment
(attribute
(identifier_self) identifier_self
(identifier__write_finished_cb) identifier__write_finished_cb
)attribute
(identifier_write_finished_cb) identifier_write_finished_cb
)assignment
)expression_statement
(expression_statement
(assignment
(identifier_data) identifier_data
(call
(identifier_bytearray) identifier_bytearray
(argument_list
)argument_list
)call
)assignment
)expression_statement
(for_statement
(identifier_poly4D) identifier_poly4D
(attribute
(identifier_self) identifier_self
(identifier_poly4Ds) identifier_poly4Ds
)attribute
(block
(expression_statement
(augmented_assignment
(identifier_data) identifier_data
(call
(attribute
(identifier_struct) identifier_struct
(identifier_pack) identifier_pack
)attribute
(argument_list
(string_'<ffffffff') string_'<ffffffff'
(list_splat
(attribute
(attribute
(identifier_poly4D) identifier_poly4D
(identifier_x) identifier_x
)attribute
(identifier_values) identifier_values
)attribute
)list_splat
)argument_list
)call
)augmented_assignment
)expression_statement
(expression_statement
(augmented_assignment
(identifier_data) identifier_data
(call
(attribute
(identifier_struct) identifier_struct
(identifier_pack) identifier_pack
)attribute
(argument_list
(string_'<ffffffff') string_'<ffffffff'
(list_splat
(attribute
(attribute
(identifier_poly4D) identifier_poly4D
(identifier_y) identifier_y
)attribute
(identifier_values) identifier_values
)attribute
)list_splat
)argument_list
)call
)augmented_assignment
)expression_statement
(expression_statement
(augmented_assignment
(identifier_data) identifier_data
(call
(attribute
(identifier_struct) identifier_struct
(identifier_pack) identifier_pack
)attribute
(argument_list
(string_'<ffffffff') string_'<ffffffff'
(list_splat
(attribute
(attribute
(identifier_poly4D) identifier_poly4D
(identifier_z) identifier_z
)attribute
(identifier_values) identifier_values
)attribute
)list_splat
)argument_list
)call
)augmented_assignment
)expression_statement
(expression_statement
(augmented_assignment
(identifier_data) identifier_data
(call
(attribute
(identifier_struct) identifier_struct
(identifier_pack) identifier_pack
)attribute
(argument_list
(string_'<ffffffff') string_'<ffffffff'
(list_splat
(attribute
(attribute
(identifier_poly4D) identifier_poly4D
(identifier_yaw) identifier_yaw
)attribute
(identifier_values) identifier_values
)attribute
)list_splat
)argument_list
)call
)augmented_assignment
)expression_statement
(expression_statement
(augmented_assignment
(identifier_data) identifier_data
(call
(attribute
(identifier_struct) identifier_struct
(identifier_pack) identifier_pack
)attribute
(argument_list
(string_'<f') string_'<f'
(attribute
(identifier_poly4D) identifier_poly4D
(identifier_duration) identifier_duration
)attribute
)argument_list
)call
)augmented_assignment
)expression_statement
)block
)for_statement
(expression_statement
(call
(attribute
(attribute
(identifier_self) identifier_self
(identifier_mem_handler) identifier_mem_handler
)attribute
(identifier_write) identifier_write
)attribute
(argument_list
(identifier_self) identifier_self
(integer_0x00) integer_0x00
(identifier_data) identifier_data
(keyword_argument
(identifier_flush_queue) identifier_flush_queue
(True) True
)keyword_argument
)argument_list
)call
)expression_statement
)block
)function_definition
)module | Write trajectory data to the Crazyflie |
(module
(function_definition
(function_name_todo) function_name_todo
(parameters
(identifier_self) identifier_self
)parameters
(block
(if_statement
(not_operator
(call
(attribute
(attribute
(identifier_os) identifier_os
(identifier_path) identifier_path
)attribute
(identifier_exists) identifier_exists
)attribute
(argument_list
(attribute
(identifier_self) identifier_self
(identifier_migrate_dir) identifier_migrate_dir
)attribute
)argument_list
)call
)not_operator
(block
(expression_statement
(call
(attribute
(attribute
(identifier_self) identifier_self
(identifier_logger) identifier_logger
)attribute
(identifier_warn) identifier_warn
)attribute
(argument_list
(string_'Migration directory: %s does not exist.') string_'Migration directory: %s does not exist.'
(attribute
(identifier_self) identifier_self
(identifier_migrate_dir) identifier_migrate_dir
)attribute
)argument_list
)call
)expression_statement
(expression_statement
(call
(attribute
(identifier_os) identifier_os
(identifier_makedirs) identifier_makedirs
)attribute
(argument_list
(attribute
(identifier_self) identifier_self
(identifier_migrate_dir) identifier_migrate_dir
)attribute
)argument_list
)call
)expression_statement
)block
)if_statement
(return_statement
(call
(identifier_sorted) identifier_sorted
(generator_expression
(subscript
(identifier_f) identifier_f
(slice
(colon) colon
(unary_operator
(integer_3) integer_3
)unary_operator
)slice
)subscript
(for_in_clause
(identifier_f) identifier_f
(call
(attribute
(identifier_os) identifier_os
(identifier_listdir) identifier_listdir
)attribute
(argument_list
(attribute
(identifier_self) identifier_self
(identifier_migrate_dir) identifier_migrate_dir
)attribute
)argument_list
)call
)for_in_clause
(if_clause
(call
(attribute
(attribute
(identifier_self) identifier_self
(identifier_filemask) identifier_filemask
)attribute
(identifier_match) identifier_match
)attribute
(argument_list
(identifier_f) identifier_f
)argument_list
)call
)if_clause
)generator_expression
)call
)return_statement
)block
)function_definition
)module | Scan migrations in file system. |
(module
(function_definition
(function_name_limits) function_name_limits
(parameters
(identifier_self) identifier_self
(identifier_variable) identifier_variable
)parameters
(block
(expression_statement
(assignment
(pattern_list
(tuple_pattern
(identifier_vmin) identifier_vmin
(identifier_vmax) identifier_vmax
)tuple_pattern
)pattern_list
(call
(attribute
(identifier_self) identifier_self
(identifier_SELECT) identifier_SELECT
)attribute
(argument_list
(binary_operator
(string_'min(%(variable)s), max(%(variable)s)') string_'min(%(variable)s), max(%(variable)s)'
(call
(identifier_vars) identifier_vars
(argument_list
)argument_list
)call
)binary_operator
)argument_list
)call
)assignment
)expression_statement
(return_statement
(expression_list
(identifier_vmin) identifier_vmin
(identifier_vmax) identifier_vmax
)expression_list
)return_statement
)block
)function_definition
)module | Return minimum and maximum of variable across all rows of data. |
(module
(function_definition
(function_name_column_correlations) function_name_column_correlations
(parameters
(identifier_self) identifier_self
(identifier_X) identifier_X
)parameters
(block
(expression_statement
(call
(attribute
(attribute
(identifier_utils) identifier_utils
(identifier_validation) identifier_validation
)attribute
(identifier_check_is_fitted) identifier_check_is_fitted
)attribute
(argument_list
(identifier_self) identifier_self
(string_'s_') string_'s_'
)argument_list
)call
)expression_statement
(if_statement
(call
(identifier_isinstance) identifier_isinstance
(argument_list
(identifier_X) identifier_X
(attribute
(identifier_np) identifier_np
(identifier_ndarray) identifier_ndarray
)attribute
)argument_list
)call
(block
(expression_statement
(assignment
(identifier_X) identifier_X
(call
(attribute
(identifier_pd) identifier_pd
(identifier_DataFrame) identifier_DataFrame
)attribute
(argument_list
(identifier_X) identifier_X
)argument_list
)call
)assignment
)expression_statement
)block
)if_statement
(expression_statement
(assignment
(identifier_row_pc) identifier_row_pc
(call
(attribute
(identifier_self) identifier_self
(identifier_row_coordinates) identifier_row_coordinates
)attribute
(argument_list
(identifier_X) identifier_X
)argument_list
)call
)assignment
)expression_statement
(return_statement
(call
(attribute
(identifier_pd) identifier_pd
(identifier_DataFrame) identifier_DataFrame
)attribute
(argument_list
(dictionary_comprehension
(pair
(identifier_component) identifier_component
(dictionary_comprehension
(pair
(identifier_feature) identifier_feature
(call
(attribute
(subscript
(identifier_row_pc) identifier_row_pc
(identifier_component) identifier_component
)subscript
(identifier_corr) identifier_corr
)attribute
(argument_list
(subscript
(identifier_X) identifier_X
(identifier_feature) identifier_feature
)subscript
)argument_list
)call
)pair
(for_in_clause
(identifier_feature) identifier_feature
(attribute
(identifier_X) identifier_X
(identifier_columns) identifier_columns
)attribute
)for_in_clause
)dictionary_comprehension
)pair
(for_in_clause
(identifier_component) identifier_component
(attribute
(identifier_row_pc) identifier_row_pc
(identifier_columns) identifier_columns
)attribute
)for_in_clause
)dictionary_comprehension
)argument_list
)call
)return_statement
)block
)function_definition
)module | Returns the column correlations with each principal component. |
(module
(function_definition
(function_name_step_type) function_name_step_type
(parameters
(identifier_self) identifier_self
)parameters
(block
(if_statement
(comparison_operator
(string_'stepfc') string_'stepfc'
(call
(attribute
(attribute
(attribute
(identifier_self) identifier_self
(identifier___class__) identifier___class__
)attribute
(identifier___name__) identifier___name__
)attribute
(identifier_lower) identifier_lower
)attribute
(argument_list
)argument_list
)call
)comparison_operator
(block
(return_statement
(identifier_STEP_FC) identifier_STEP_FC
)return_statement
)block
)if_statement
(if_statement
(comparison_operator
(string_'stepkw') string_'stepkw'
(call
(attribute
(attribute
(attribute
(identifier_self) identifier_self
(identifier___class__) identifier___class__
)attribute
(identifier___name__) identifier___name__
)attribute
(identifier_lower) identifier_lower
)attribute
(argument_list
)argument_list
)call
)comparison_operator
(block
(return_statement
(identifier_STEP_KW) identifier_STEP_KW
)return_statement
)block
)if_statement
)block
)function_definition
)module | Whether it's a IFCW step or Keyword Wizard Step. |
(module
(function_definition
(function_name_print_plugins) function_name_print_plugins
(parameters
(identifier_self) identifier_self
)parameters
(block
(expression_statement
(assignment
(identifier_width) identifier_width
(call
(identifier_console_width) identifier_console_width
(argument_list
)argument_list
)call
)assignment
)expression_statement
(expression_statement
(assignment
(identifier_line) identifier_line
(binary_operator
(binary_operator
(attribute
(identifier_Style) identifier_Style
(identifier_BRIGHT) identifier_BRIGHT
)attribute
(binary_operator
(string_'=') string_'='
(identifier_width) identifier_width
)binary_operator
)binary_operator
(string_'\n') string_'\n'
)binary_operator
)assignment
)expression_statement
(expression_statement
(assignment
(identifier_middle) identifier_middle
(call
(identifier_int) identifier_int
(argument_list
(binary_operator
(identifier_width) identifier_width
(integer_2) integer_2
)binary_operator
)argument_list
)call
)assignment
)expression_statement
(if_statement
(attribute
(identifier_self) identifier_self
(identifier_available_providers) identifier_available_providers
)attribute
(block
(expression_statement
(call
(identifier_print) identifier_print
(argument_list
(binary_operator
(binary_operator
(identifier_line) identifier_line
(binary_operator
(string_' ') string_' '
(identifier_middle) identifier_middle
)binary_operator
)binary_operator
(string_'PROVIDERS') string_'PROVIDERS'
)binary_operator
)argument_list
)call
)expression_statement
(for_statement
(identifier_provider) identifier_provider
(call
(identifier_sorted) identifier_sorted
(argument_list
(call
(attribute
(attribute
(identifier_self) identifier_self
(identifier_available_providers) identifier_available_providers
)attribute
(identifier_values) identifier_values
)attribute
(argument_list
)argument_list
)call
(keyword_argument
(identifier_key) identifier_key
(lambda
(lambda_parameters
(identifier_x) identifier_x
)lambda_parameters
(attribute
(identifier_x) identifier_x
(identifier_identifier) identifier_identifier
)attribute
)lambda
)keyword_argument
)argument_list
)call
(block
(expression_statement
(call
(attribute
(call
(identifier_provider) identifier_provider
(argument_list
)argument_list
)call
(identifier_print) identifier_print
)attribute
(argument_list
)argument_list
)call
)expression_statement
(expression_statement
(call
(identifier_print) identifier_print
(argument_list
)argument_list
)call
)expression_statement
)block
)for_statement
)block
)if_statement
(if_statement
(attribute
(identifier_self) identifier_self
(identifier_available_checkers) identifier_available_checkers
)attribute
(block
(expression_statement
(call
(identifier_print) identifier_print
(argument_list
(binary_operator
(binary_operator
(identifier_line) identifier_line
(binary_operator
(string_' ') string_' '
(identifier_middle) identifier_middle
)binary_operator
)binary_operator
(string_'CHECKERS') string_'CHECKERS'
)binary_operator
)argument_list
)call
)expression_statement
(for_statement
(identifier_checker) identifier_checker
(call
(identifier_sorted) identifier_sorted
(argument_list
(call
(attribute
(attribute
(identifier_self) identifier_self
(identifier_available_checkers) identifier_available_checkers
)attribute
(identifier_values) identifier_values
)attribute
(argument_list
)argument_list
)call
(keyword_argument
(identifier_key) identifier_key
(lambda
(lambda_parameters
(identifier_x) identifier_x
)lambda_parameters
(attribute
(identifier_x) identifier_x
(identifier_identifier) identifier_identifier
)attribute
)lambda
)keyword_argument
)argument_list
)call
(block
(expression_statement
(call
(attribute
(call
(identifier_checker) identifier_checker
(argument_list
)argument_list
)call
(identifier_print) identifier_print
)attribute
(argument_list
)argument_list
)call
)expression_statement
(expression_statement
(call
(identifier_print) identifier_print
(argument_list
)argument_list
)call
)expression_statement
)block
)for_statement
)block
)if_statement
)block
)function_definition
)module | Print the available plugins. |
(module
(function_definition
(function_name__from_api_repr) function_name__from_api_repr
(parameters
(identifier_cls) identifier_cls
(identifier_resource) identifier_resource
)parameters
(block
(expression_statement
(assignment
(identifier_job_id) identifier_job_id
(call
(attribute
(identifier_resource) identifier_resource
(identifier_get) identifier_get
)attribute
(argument_list
(string_"jobId") string_"jobId"
)argument_list
)call
)assignment
)expression_statement
(expression_statement
(assignment
(identifier_project) identifier_project
(call
(attribute
(identifier_resource) identifier_resource
(identifier_get) identifier_get
)attribute
(argument_list
(string_"projectId") string_"projectId"
)argument_list
)call
)assignment
)expression_statement
(expression_statement
(assignment
(identifier_location) identifier_location
(call
(attribute
(identifier_resource) identifier_resource
(identifier_get) identifier_get
)attribute
(argument_list
(string_"location") string_"location"
)argument_list
)call
)assignment
)expression_statement
(expression_statement
(assignment
(identifier_job_ref) identifier_job_ref
(call
(identifier_cls) identifier_cls
(argument_list
(identifier_job_id) identifier_job_id
(identifier_project) identifier_project
(identifier_location) identifier_location
)argument_list
)call
)assignment
)expression_statement
(return_statement
(identifier_job_ref) identifier_job_ref
)return_statement
)block
)function_definition
)module | Returns a job reference for an API resource representation. |
(module
(function_definition
(function_name_blacklistClient) function_name_blacklistClient
(parameters
(identifier_self) identifier_self
(typed_parameter
(identifier_clientName) identifier_clientName
(type
(identifier_str) identifier_str
)type
)typed_parameter
(typed_default_parameter
(identifier_reason) identifier_reason
(type
(identifier_str) identifier_str
)type
(None) None
)typed_default_parameter
(typed_default_parameter
(identifier_code) identifier_code
(type
(identifier_int) identifier_int
)type
(None) None
)typed_default_parameter
)parameters
(block
(expression_statement
(assignment
(identifier_msg) identifier_msg
(call
(attribute
(string_"{} blacklisting client {}") string_"{} blacklisting client {}"
(identifier_format) identifier_format
)attribute
(argument_list
(identifier_self) identifier_self
(identifier_clientName) identifier_clientName
)argument_list
)call
)assignment
)expression_statement
(if_statement
(identifier_reason) identifier_reason
(block
(expression_statement
(augmented_assignment
(identifier_msg) identifier_msg
(call
(attribute
(string_" for reason {}") string_" for reason {}"
(identifier_format) identifier_format
)attribute
(argument_list
(identifier_reason) identifier_reason
)argument_list
)call
)augmented_assignment
)expression_statement
)block
)if_statement
(expression_statement
(call
(attribute
(identifier_logger) identifier_logger
(identifier_display) identifier_display
)attribute
(argument_list
(identifier_msg) identifier_msg
)argument_list
)call
)expression_statement
(expression_statement
(call
(attribute
(attribute
(identifier_self) identifier_self
(identifier_clientBlacklister) identifier_clientBlacklister
)attribute
(identifier_blacklist) identifier_blacklist
)attribute
(argument_list
(identifier_clientName) identifier_clientName
)argument_list
)call
)expression_statement
)block
)function_definition
)module | Add the client specified by `clientName` to this node's blacklist |
(module
(function_definition
(function_name_wc_names) function_name_wc_names
(parameters
(identifier_self) identifier_self
)parameters
(block
(if_statement
(comparison_operator
(attribute
(identifier_self) identifier_self
(identifier_wc_name) identifier_wc_name
)attribute
(None) None
)comparison_operator
(block
(expression_statement
(assignment
(identifier_res) identifier_res
(call
(identifier_set) identifier_set
(argument_list
)argument_list
)call
)assignment
)expression_statement
)block
(else_clause
(block
(expression_statement
(assignment
(identifier_res) identifier_res
(call
(identifier_set) identifier_set
(argument_list
(list
(attribute
(identifier_self) identifier_self
(identifier_wc_name) identifier_wc_name
)attribute
)list
)argument_list
)call
)assignment
)expression_statement
)block
)else_clause
)if_statement
(if_statement
(comparison_operator
(attribute
(identifier_self) identifier_self
(identifier_args) identifier_args
)attribute
(None) None
)comparison_operator
(block
(for_statement
(identifier_arg) identifier_arg
(attribute
(identifier_self) identifier_self
(identifier_args) identifier_args
)attribute
(block
(if_statement
(call
(identifier_isinstance) identifier_isinstance
(argument_list
(identifier_arg) identifier_arg
(identifier_Pattern) identifier_Pattern
)argument_list
)call
(block
(expression_statement
(call
(attribute
(identifier_res) identifier_res
(identifier_update) identifier_update
)attribute
(argument_list
(attribute
(identifier_arg) identifier_arg
(identifier_wc_names) identifier_wc_names
)attribute
)argument_list
)call
)expression_statement
)block
)if_statement
)block
)for_statement
)block
)if_statement
(if_statement
(comparison_operator
(attribute
(identifier_self) identifier_self
(identifier_kwargs) identifier_kwargs
)attribute
(None) None
)comparison_operator
(block
(for_statement
(identifier_val) identifier_val
(call
(attribute
(attribute
(identifier_self) identifier_self
(identifier_kwargs) identifier_kwargs
)attribute
(identifier_values) identifier_values
)attribute
(argument_list
)argument_list
)call
(block
(if_statement
(call
(identifier_isinstance) identifier_isinstance
(argument_list
(identifier_val) identifier_val
(identifier_Pattern) identifier_Pattern
)argument_list
)call
(block
(expression_statement
(call
(attribute
(identifier_res) identifier_res
(identifier_update) identifier_update
)attribute
(argument_list
(attribute
(identifier_val) identifier_val
(identifier_wc_names) identifier_wc_names
)attribute
)argument_list
)call
)expression_statement
)block
)if_statement
)block
)for_statement
)block
)if_statement
(return_statement
(identifier_res) identifier_res
)return_statement
)block
)function_definition
)module | Set of all wildcard names occurring in the pattern |
(module
(function_definition
(function_name_add) function_name_add
(parameters
(identifier_self) identifier_self
(identifier_r) identifier_r
)parameters
(block
(expression_statement
(assignment
(identifier_id) identifier_id
(call
(attribute
(identifier_r) identifier_r
(identifier_get_residue_id) identifier_get_residue_id
)attribute
(argument_list
)argument_list
)call
)assignment
)expression_statement
(if_statement
(attribute
(identifier_self) identifier_self
(identifier_order) identifier_order
)attribute
(block
(expression_statement
(assignment
(identifier_last_id) identifier_last_id
(subscript
(attribute
(identifier_self) identifier_self
(identifier_order) identifier_order
)attribute
(unary_operator
(integer_1) integer_1
)unary_operator
)subscript
)assignment
)expression_statement
(if_statement
(comparison_operator
(identifier_id) identifier_id
(attribute
(identifier_self) identifier_self
(identifier_order) identifier_order
)attribute
)comparison_operator
(block
(raise_statement
(call
(attribute
(identifier_colortext) identifier_colortext
(identifier_Exception) identifier_Exception
)attribute
(argument_list
(string_'Warning: using code to "allow for multiresidue noncanonicals" - check this case manually.') string_'Warning: using code to "allow for multiresidue noncanonicals" - check this case manually.'
)argument_list
)call
)raise_statement
(expression_statement
(assignment
(identifier_id) identifier_id
(binary_operator
(string_'%s.%d') string_'%s.%d'
(tuple
(call
(identifier_str) identifier_str
(argument_list
(identifier_id) identifier_id
)argument_list
)call
(attribute
(identifier_self) identifier_self
(identifier_special_insertion_count) identifier_special_insertion_count
)attribute
)tuple
)binary_operator
)assignment
)expression_statement
(expression_statement
(augmented_assignment
(attribute
(identifier_self) identifier_self
(identifier_special_insertion_count) identifier_special_insertion_count
)attribute
(integer_1) integer_1
)augmented_assignment
)expression_statement
)block
)if_statement
(assert_statement
(parenthesized_expression
(comparison_operator
(attribute
(identifier_r) identifier_r
(identifier_Chain) identifier_Chain
)attribute
(attribute
(subscript
(attribute
(identifier_self) identifier_self
(identifier_sequence) identifier_sequence
)attribute
(identifier_last_id) identifier_last_id
)subscript
(identifier_Chain) identifier_Chain
)attribute
)comparison_operator
)parenthesized_expression
)assert_statement
(assert_statement
(parenthesized_expression
(comparison_operator
(attribute
(identifier_r) identifier_r
(identifier_residue_type) identifier_residue_type
)attribute
(attribute
(subscript
(attribute
(identifier_self) identifier_self
(identifier_sequence) identifier_sequence
)attribute
(identifier_last_id) identifier_last_id
)subscript
(identifier_residue_type) identifier_residue_type
)attribute
)comparison_operator
)parenthesized_expression
)assert_statement
)block
)if_statement
(expression_statement
(call
(attribute
(attribute
(identifier_self) identifier_self
(identifier_order) identifier_order
)attribute
(identifier_append) identifier_append
)attribute
(argument_list
(identifier_id) identifier_id
)argument_list
)call
)expression_statement
(expression_statement
(assignment
(subscript
(attribute
(identifier_self) identifier_self
(identifier_sequence) identifier_sequence
)attribute
(identifier_id) identifier_id
)subscript
(identifier_r) identifier_r
)assignment
)expression_statement
)block
)function_definition
)module | Takes an id and a Residue r and adds them to the Sequence. |
(module
(function_definition
(function_name_data_import) function_name_data_import
(parameters
(identifier_self) identifier_self
(identifier_json_response) identifier_json_response
)parameters
(block
(if_statement
(comparison_operator
(string_'data') string_'data'
(identifier_json_response) identifier_json_response
)comparison_operator
(block
(raise_statement
(call
(identifier_PyVLXException) identifier_PyVLXException
(argument_list
(call
(attribute
(string_'no element data found: {0}') string_'no element data found: {0}'
(identifier_format) identifier_format
)attribute
(argument_list
(call
(attribute
(identifier_json) identifier_json
(identifier_dumps) identifier_dumps
)attribute
(argument_list
(identifier_json_response) identifier_json_response
)argument_list
)call
)argument_list
)call
)argument_list
)call
)raise_statement
)block
)if_statement
(expression_statement
(assignment
(identifier_data) identifier_data
(subscript
(identifier_json_response) identifier_json_response
(string_'data') string_'data'
)subscript
)assignment
)expression_statement
(for_statement
(identifier_item) identifier_item
(identifier_data) identifier_data
(block
(expression_statement
(call
(attribute
(identifier_self) identifier_self
(identifier_load_scene) identifier_load_scene
)attribute
(argument_list
(identifier_item) identifier_item
)argument_list
)call
)expression_statement
)block
)for_statement
)block
)function_definition
)module | Import scenes from JSON response. |
(module
(function_definition
(function_name_authenticate) function_name_authenticate
(parameters
(identifier_self) identifier_self
(default_parameter
(identifier_username) identifier_username
(None) None
)default_parameter
(default_parameter
(identifier_password) identifier_password
(None) None
)default_parameter
(dictionary_splat_pattern
(identifier_kwargs) identifier_kwargs
)dictionary_splat_pattern
)parameters
(block
(try_statement
(block
(expression_statement
(assignment
(identifier_user) identifier_user
(call
(attribute
(attribute
(identifier_User) identifier_User
(identifier_objects) identifier_objects
)attribute
(identifier_get) identifier_get
)attribute
(argument_list
(keyword_argument
(identifier_email) identifier_email
(identifier_username) identifier_username
)keyword_argument
)argument_list
)call
)assignment
)expression_statement
(if_statement
(call
(attribute
(identifier_user) identifier_user
(identifier_check_password) identifier_check_password
)attribute
(argument_list
(identifier_password) identifier_password
)argument_list
)call
(block
(return_statement
(identifier_user) identifier_user
)return_statement
)block
)if_statement
)block
(except_clause
(tuple
(attribute
(identifier_User) identifier_User
(identifier_DoesNotExist) identifier_DoesNotExist
)attribute
(attribute
(identifier_User) identifier_User
(identifier_MultipleObjectsReturned) identifier_MultipleObjectsReturned
)attribute
)tuple
(block
(expression_statement
(call
(attribute
(identifier_logging) identifier_logging
(identifier_warning) identifier_warning
)attribute
(argument_list
(call
(attribute
(string_'Unsuccessful login attempt using username/email: {0}') string_'Unsuccessful login attempt using username/email: {0}'
(identifier_format) identifier_format
)attribute
(argument_list
(identifier_username) identifier_username
)argument_list
)call
)argument_list
)call
)expression_statement
)block
)except_clause
)try_statement
(return_statement
(None) None
)return_statement
)block
)function_definition
)module | "username" being passed is really email address and being compared to as such. |
(module
(function_definition
(function_name_add_source) function_name_add_source
(parameters
(identifier_self) identifier_self
(identifier_url) identifier_url
(keyword_separator
)keyword_separator
(default_parameter
(identifier_note) identifier_note
(string_'') string_''
)default_parameter
)parameters
(block
(expression_statement
(assignment
(identifier_new) identifier_new
(dictionary
(pair
(string_'url') string_'url'
(identifier_url) identifier_url
)pair
(pair
(string_'note') string_'note'
(identifier_note) identifier_note
)pair
)dictionary
)assignment
)expression_statement
(expression_statement
(call
(attribute
(attribute
(identifier_self) identifier_self
(identifier_sources) identifier_sources
)attribute
(identifier_append) identifier_append
)attribute
(argument_list
(identifier_new) identifier_new
)argument_list
)call
)expression_statement
)block
)function_definition
)module | Add a source URL from which data was collected |
(module
(function_definition
(function_name_limit_author_choices) function_name_limit_author_choices
(parameters
)parameters
(block
(expression_statement
(assignment
(identifier_LIMIT_AUTHOR_CHOICES) identifier_LIMIT_AUTHOR_CHOICES
(call
(identifier_getattr) identifier_getattr
(argument_list
(identifier_settings) identifier_settings
(string_'BLOG_LIMIT_AUTHOR_CHOICES_GROUP') string_'BLOG_LIMIT_AUTHOR_CHOICES_GROUP'
(None) None
)argument_list
)call
)assignment
)expression_statement
(if_statement
(identifier_LIMIT_AUTHOR_CHOICES) identifier_LIMIT_AUTHOR_CHOICES
(block
(if_statement
(call
(identifier_isinstance) identifier_isinstance
(argument_list
(identifier_LIMIT_AUTHOR_CHOICES) identifier_LIMIT_AUTHOR_CHOICES
(identifier_str) identifier_str
)argument_list
)call
(block
(expression_statement
(assignment
(identifier_limit) identifier_limit
(call
(identifier_Q) identifier_Q
(argument_list
(keyword_argument
(identifier_groups__name) identifier_groups__name
(identifier_LIMIT_AUTHOR_CHOICES) identifier_LIMIT_AUTHOR_CHOICES
)keyword_argument
)argument_list
)call
)assignment
)expression_statement
)block
(else_clause
(block
(expression_statement
(assignment
(identifier_limit) identifier_limit
(call
(identifier_Q) identifier_Q
(argument_list
)argument_list
)call
)assignment
)expression_statement
(for_statement
(identifier_s) identifier_s
(identifier_LIMIT_AUTHOR_CHOICES) identifier_LIMIT_AUTHOR_CHOICES
(block
(expression_statement
(assignment
(identifier_limit) identifier_limit
(binary_operator
(identifier_limit) identifier_limit
(call
(identifier_Q) identifier_Q
(argument_list
(keyword_argument
(identifier_groups__name) identifier_groups__name
(identifier_s) identifier_s
)keyword_argument
)argument_list
)call
)binary_operator
)assignment
)expression_statement
)block
)for_statement
)block
)else_clause
)if_statement
(if_statement
(call
(identifier_getattr) identifier_getattr
(argument_list
(identifier_settings) identifier_settings
(string_'BLOG_LIMIT_AUTHOR_CHOICES_ADMIN') string_'BLOG_LIMIT_AUTHOR_CHOICES_ADMIN'
(False) False
)argument_list
)call
(block
(expression_statement
(assignment
(identifier_limit) identifier_limit
(binary_operator
(identifier_limit) identifier_limit
(call
(identifier_Q) identifier_Q
(argument_list
(keyword_argument
(identifier_is_staff) identifier_is_staff
(True) True
)keyword_argument
)argument_list
)call
)binary_operator
)assignment
)expression_statement
)block
)if_statement
)block
(else_clause
(block
(expression_statement
(assignment
(identifier_limit) identifier_limit
(dictionary
(pair
(string_'is_staff') string_'is_staff'
(True) True
)pair
)dictionary
)assignment
)expression_statement
)block
)else_clause
)if_statement
(return_statement
(identifier_limit) identifier_limit
)return_statement
)block
)function_definition
)module | Limit choices in blog author field based on config settings |
(module
(function_definition
(function_name_calculate_leapdays) function_name_calculate_leapdays
(parameters
(identifier_init_date) identifier_init_date
(identifier_final_date) identifier_final_date
)parameters
(block
(expression_statement
(assignment
(identifier_leap_days) identifier_leap_days
(binary_operator
(binary_operator
(parenthesized_expression
(binary_operator
(attribute
(identifier_final_date) identifier_final_date
(identifier_year) identifier_year
)attribute
(integer_1) integer_1
)binary_operator
)parenthesized_expression
(integer_4) integer_4
)binary_operator
(binary_operator
(parenthesized_expression
(binary_operator
(attribute
(identifier_init_date) identifier_init_date
(identifier_year) identifier_year
)attribute
(integer_1) integer_1
)binary_operator
)parenthesized_expression
(integer_4) integer_4
)binary_operator
)binary_operator
)assignment
)expression_statement
(expression_statement
(augmented_assignment
(identifier_leap_days) identifier_leap_days
(binary_operator
(binary_operator
(parenthesized_expression
(binary_operator
(attribute
(identifier_final_date) identifier_final_date
(identifier_year) identifier_year
)attribute
(integer_1) integer_1
)binary_operator
)parenthesized_expression
(integer_100) integer_100
)binary_operator
(binary_operator
(parenthesized_expression
(binary_operator
(attribute
(identifier_init_date) identifier_init_date
(identifier_year) identifier_year
)attribute
(integer_1) integer_1
)binary_operator
)parenthesized_expression
(integer_100) integer_100
)binary_operator
)binary_operator
)augmented_assignment
)expression_statement
(expression_statement
(augmented_assignment
(identifier_leap_days) identifier_leap_days
(binary_operator
(binary_operator
(parenthesized_expression
(binary_operator
(attribute
(identifier_final_date) identifier_final_date
(identifier_year) identifier_year
)attribute
(integer_1) integer_1
)binary_operator
)parenthesized_expression
(integer_400) integer_400
)binary_operator
(binary_operator
(parenthesized_expression
(binary_operator
(attribute
(identifier_init_date) identifier_init_date
(identifier_year) identifier_year
)attribute
(integer_1) integer_1
)binary_operator
)parenthesized_expression
(integer_400) integer_400
)binary_operator
)binary_operator
)augmented_assignment
)expression_statement
(return_statement
(call
(attribute
(identifier_datetime) identifier_datetime
(identifier_timedelta) identifier_timedelta
)attribute
(argument_list
(keyword_argument
(identifier_days) identifier_days
(identifier_leap_days) identifier_leap_days
)keyword_argument
)argument_list
)call
)return_statement
)block
)function_definition
)module | Currently unsupported, it only works for differences in years. |
(module
(function_definition
(function_name__ParseMatchGrp) function_name__ParseMatchGrp
(parameters
(identifier_self) identifier_self
(identifier_key) identifier_key
(identifier_val) identifier_val
)parameters
(block
(if_statement
(comparison_operator
(identifier_key) identifier_key
(attribute
(identifier_self) identifier_self
(identifier__match_keywords) identifier__match_keywords
)attribute
)comparison_operator
(block
(expression_statement
(call
(attribute
(identifier_self) identifier_self
(identifier__ParseEntry) identifier__ParseEntry
)attribute
(argument_list
(identifier_key) identifier_key
(identifier_val) identifier_val
)argument_list
)call
)expression_statement
)block
)if_statement
)block
)function_definition
)module | Adds valid match group parameters to the configuration. |
(module
(function_definition
(function_name_existing_path) function_name_existing_path
(parameters
(identifier_value) identifier_value
)parameters
(block
(if_statement
(call
(attribute
(attribute
(identifier_os) identifier_os
(identifier_path) identifier_path
)attribute
(identifier_exists) identifier_exists
)attribute
(argument_list
(identifier_value) identifier_value
)argument_list
)call
(block
(return_statement
(identifier_value) identifier_value
)return_statement
)block
(else_clause
(block
(raise_statement
(call
(attribute
(identifier_argparse) identifier_argparse
(identifier_ArgumentTypeError) identifier_ArgumentTypeError
)attribute
(argument_list
(call
(attribute
(string_"Path {0} not found") string_"Path {0} not found"
(identifier_format) identifier_format
)attribute
(argument_list
(identifier_value) identifier_value
)argument_list
)call
)argument_list
)call
)raise_statement
)block
)else_clause
)if_statement
)block
)function_definition
)module | Throws when the path does not exist |
(module
(function_definition
(function_name_load_json) function_name_load_json
(parameters
(identifier_self) identifier_self
(identifier_json) identifier_json
)parameters
(block
(for_statement
(identifier_key) identifier_key
(identifier_json) identifier_json
(block
(if_statement
(comparison_operator
(identifier_key) identifier_key
(string_"wandb_version") string_"wandb_version"
)comparison_operator
(block
(continue_statement
)continue_statement
)block
)if_statement
(expression_statement
(assignment
(subscript
(attribute
(identifier_self) identifier_self
(identifier__items) identifier__items
)attribute
(identifier_key) identifier_key
)subscript
(call
(attribute
(subscript
(identifier_json) identifier_json
(identifier_key) identifier_key
)subscript
(identifier_get) identifier_get
)attribute
(argument_list
(string_'value') string_'value'
)argument_list
)call
)assignment
)expression_statement
(expression_statement
(assignment
(subscript
(attribute
(identifier_self) identifier_self
(identifier__descriptions) identifier__descriptions
)attribute
(identifier_key) identifier_key
)subscript
(call
(attribute
(subscript
(identifier_json) identifier_json
(identifier_key) identifier_key
)subscript
(identifier_get) identifier_get
)attribute
(argument_list
(string_'desc') string_'desc'
)argument_list
)call
)assignment
)expression_statement
)block
)for_statement
)block
)function_definition
)module | Loads existing config from JSON |
(module
(function_definition
(function_name_t_ID) function_name_t_ID
(parameters
(identifier_self) identifier_self
(identifier_t) identifier_t
)parameters
(block
(expression_statement
(string_r'[a-zA-Z_@][a-zA-Z0-9_@\-]*') string_r'[a-zA-Z_@][a-zA-Z0-9_@\-]*'
)expression_statement
(expression_statement
(assignment
(attribute
(identifier_t) identifier_t
(identifier_type) identifier_type
)attribute
(call
(attribute
(attribute
(identifier_self) identifier_self
(identifier_reserved_words) identifier_reserved_words
)attribute
(identifier_get) identifier_get
)attribute
(argument_list
(attribute
(identifier_t) identifier_t
(identifier_value) identifier_value
)attribute
(string_'ID') string_'ID'
)argument_list
)call
)assignment
)expression_statement
(return_statement
(identifier_t) identifier_t
)return_statement
)block
)function_definition
)module | r'[a-zA-Z_@][a-zA-Z0-9_@\-]* |
(module
(function_definition
(function_name_render_toctrees) function_name_render_toctrees
(parameters
(typed_parameter
(identifier_kb_app) identifier_kb_app
(type
(identifier_kb) identifier_kb
)type
)typed_parameter
(typed_parameter
(identifier_sphinx_app) identifier_sphinx_app
(type
(identifier_Sphinx) identifier_Sphinx
)type
)typed_parameter
(typed_parameter
(identifier_doctree) identifier_doctree
(type
(identifier_doctree) identifier_doctree
)type
)typed_parameter
(typed_parameter
(identifier_fromdocname) identifier_fromdocname
(type
(identifier_str) identifier_str
)type
)typed_parameter
)parameters
(block
(expression_statement
(assignment
(identifier_settings) identifier_settings
(type
(identifier_KaybeeSettings) identifier_KaybeeSettings
)type
(attribute
(attribute
(identifier_sphinx_app) identifier_sphinx_app
(identifier_config) identifier_config
)attribute
(identifier_kaybee_settings) identifier_kaybee_settings
)attribute
)assignment
)expression_statement
(if_statement
(not_operator
(attribute
(attribute
(identifier_settings) identifier_settings
(identifier_articles) identifier_articles
)attribute
(identifier_use_toctree) identifier_use_toctree
)attribute
)not_operator
(block
(return_statement
)return_statement
)block
)if_statement
(expression_statement
(assignment
(identifier_builder) identifier_builder
(type
(identifier_StandaloneHTMLBuilder) identifier_StandaloneHTMLBuilder
)type
(attribute
(identifier_sphinx_app) identifier_sphinx_app
(identifier_builder) identifier_builder
)attribute
)assignment
)expression_statement
(expression_statement
(assignment
(identifier_env) identifier_env
(type
(identifier_BuildEnvironment) identifier_BuildEnvironment
)type
(attribute
(identifier_sphinx_app) identifier_sphinx_app
(identifier_env) identifier_env
)attribute
)assignment
)expression_statement
(expression_statement
(assignment
(identifier_registered_toctree) identifier_registered_toctree
(call
(attribute
(identifier_ToctreeAction) identifier_ToctreeAction
(identifier_get_for_context) identifier_get_for_context
)attribute
(argument_list
(identifier_kb_app) identifier_kb_app
)argument_list
)call
)assignment
)expression_statement
(for_statement
(identifier_node) identifier_node
(call
(attribute
(identifier_doctree) identifier_doctree
(identifier_traverse) identifier_traverse
)attribute
(argument_list
(identifier_toctree) identifier_toctree
)argument_list
)call
(block
(if_statement
(subscript
(attribute
(identifier_node) identifier_node
(identifier_attributes) identifier_attributes
)attribute
(string_'hidden') string_'hidden'
)subscript
(block
(continue_statement
)continue_statement
)block
)if_statement
(expression_statement
(assignment
(identifier_custom_toctree) identifier_custom_toctree
(call
(identifier_registered_toctree) identifier_registered_toctree
(argument_list
(identifier_fromdocname) identifier_fromdocname
)argument_list
)call
)assignment
)expression_statement
(expression_statement
(assignment
(identifier_context) identifier_context
(call
(attribute
(attribute
(identifier_builder) identifier_builder
(identifier_globalcontext) identifier_globalcontext
)attribute
(identifier_copy) identifier_copy
)attribute
(argument_list
)argument_list
)call
)assignment
)expression_statement
(expression_statement
(assignment
(subscript
(identifier_context) identifier_context
(string_'sphinx_app') string_'sphinx_app'
)subscript
(identifier_sphinx_app) identifier_sphinx_app
)assignment
)expression_statement
(expression_statement
(assignment
(identifier_entries) identifier_entries
(subscript
(attribute
(identifier_node) identifier_node
(identifier_attributes) identifier_attributes
)attribute
(string_'entries') string_'entries'
)subscript
)assignment
)expression_statement
(expression_statement
(call
(attribute
(identifier_custom_toctree) identifier_custom_toctree
(identifier_set_entries) identifier_set_entries
)attribute
(argument_list
(identifier_entries) identifier_entries
(attribute
(identifier_env) identifier_env
(identifier_titles) identifier_titles
)attribute
(attribute
(attribute
(identifier_sphinx_app) identifier_sphinx_app
(identifier_env) identifier_env
)attribute
(identifier_resources) identifier_resources
)attribute
)argument_list
)call
)expression_statement
(expression_statement
(assignment
(identifier_output) identifier_output
(call
(attribute
(identifier_custom_toctree) identifier_custom_toctree
(identifier_render) identifier_render
)attribute
(argument_list
(identifier_builder) identifier_builder
(identifier_context) identifier_context
(identifier_sphinx_app) identifier_sphinx_app
)argument_list
)call
)assignment
)expression_statement
(expression_statement
(assignment
(identifier_listing) identifier_listing
(list
(call
(attribute
(identifier_nodes) identifier_nodes
(identifier_raw) identifier_raw
)attribute
(argument_list
(string_'') string_''
(identifier_output) identifier_output
(keyword_argument
(identifier_format) identifier_format
(string_'html') string_'html'
)keyword_argument
)argument_list
)call
)list
)assignment
)expression_statement
(expression_statement
(call
(attribute
(identifier_node) identifier_node
(identifier_replace_self) identifier_replace_self
)attribute
(argument_list
(identifier_listing) identifier_listing
)argument_list
)call
)expression_statement
)block
)for_statement
)block
)function_definition
)module | Look in doctrees for toctree and replace with custom render |
(module
(function_definition
(function_name_sort) function_name_sort
(parameters
(identifier_ctx) identifier_ctx
)parameters
(block
(expression_statement
(assignment
(identifier_head) identifier_head
(attribute
(attribute
(identifier_ctx) identifier_ctx
(identifier_parent) identifier_parent
)attribute
(identifier_head) identifier_head
)attribute
)assignment
)expression_statement
(expression_statement
(assignment
(identifier_vcf_handle) identifier_vcf_handle
(attribute
(attribute
(identifier_ctx) identifier_ctx
(identifier_parent) identifier_parent
)attribute
(identifier_handle) identifier_handle
)attribute
)assignment
)expression_statement
(expression_statement
(assignment
(identifier_outfile) identifier_outfile
(attribute
(attribute
(identifier_ctx) identifier_ctx
(identifier_parent) identifier_parent
)attribute
(identifier_outfile) identifier_outfile
)attribute
)assignment
)expression_statement
(expression_statement
(assignment
(identifier_silent) identifier_silent
(attribute
(attribute
(identifier_ctx) identifier_ctx
(identifier_parent) identifier_parent
)attribute
(identifier_silent) identifier_silent
)attribute
)assignment
)expression_statement
(expression_statement
(call
(identifier_print_headers) identifier_print_headers
(argument_list
(identifier_head) identifier_head
(keyword_argument
(identifier_outfile) identifier_outfile
(identifier_outfile) identifier_outfile
)keyword_argument
(keyword_argument
(identifier_silent) identifier_silent
(identifier_silent) identifier_silent
)keyword_argument
)argument_list
)call
)expression_statement
(for_statement
(identifier_line) identifier_line
(call
(identifier_sort_variants) identifier_sort_variants
(argument_list
(identifier_vcf_handle) identifier_vcf_handle
)argument_list
)call
(block
(expression_statement
(call
(identifier_print_variant) identifier_print_variant
(argument_list
(keyword_argument
(identifier_variant_line) identifier_variant_line
(identifier_line) identifier_line
)keyword_argument
(keyword_argument
(identifier_outfile) identifier_outfile
(identifier_outfile) identifier_outfile
)keyword_argument
(keyword_argument
(identifier_silent) identifier_silent
(identifier_silent) identifier_silent
)keyword_argument
)argument_list
)call
)expression_statement
)block
)for_statement
)block
)function_definition
)module | Sort the variants of a vcf file |
(module
(function_definition
(function_name_cmd_list_identities) function_name_cmd_list_identities
(parameters
(identifier_self) identifier_self
(list_splat_pattern
(identifier_args) identifier_args
)list_splat_pattern
)parameters
(block
(expression_statement
(assignment
(identifier_identities) identifier_identities
(call
(attribute
(identifier_self) identifier_self
(identifier__get_available_identities) identifier__get_available_identities
)attribute
(argument_list
)argument_list
)call
)assignment
)expression_statement
(expression_statement
(call
(identifier_print) identifier_print
(argument_list
(string_'Available identities:') string_'Available identities:'
)argument_list
)call
)expression_statement
(for_statement
(identifier_x) identifier_x
(identifier_identities) identifier_identities
(block
(expression_statement
(call
(identifier_print) identifier_print
(argument_list
(call
(attribute
(string_' - {}') string_' - {}'
(identifier_format) identifier_format
)attribute
(argument_list
(identifier_x) identifier_x
)argument_list
)call
)argument_list
)call
)expression_statement
)block
)for_statement
)block
)function_definition
)module | List the available identities to use for signing. |
(module
(function_definition
(function_name_to_native_units) function_name_to_native_units
(parameters
(identifier_self) identifier_self
(identifier_motor) identifier_motor
)parameters
(block
(assert_statement
(comparison_operator
(call
(identifier_abs) identifier_abs
(argument_list
(attribute
(identifier_self) identifier_self
(identifier_degrees_per_second) identifier_degrees_per_second
)attribute
)argument_list
)call
(attribute
(identifier_motor) identifier_motor
(identifier_max_dps) identifier_max_dps
)attribute
)comparison_operator
(call
(attribute
(string_"invalid degrees-per-second: {} max DPS is {}, {} was requested") string_"invalid degrees-per-second: {} max DPS is {}, {} was requested"
(identifier_format) identifier_format
)attribute
(argument_list
(identifier_motor) identifier_motor
(attribute
(identifier_motor) identifier_motor
(identifier_max_dps) identifier_max_dps
)attribute
(attribute
(identifier_self) identifier_self
(identifier_degrees_per_second) identifier_degrees_per_second
)attribute
)argument_list
)call
)assert_statement
(return_statement
(binary_operator
(binary_operator
(attribute
(identifier_self) identifier_self
(identifier_degrees_per_second) identifier_degrees_per_second
)attribute
(attribute
(identifier_motor) identifier_motor
(identifier_max_dps) identifier_max_dps
)attribute
)binary_operator
(attribute
(identifier_motor) identifier_motor
(identifier_max_speed) identifier_max_speed
)attribute
)binary_operator
)return_statement
)block
)function_definition
)module | Return the native speed measurement required to achieve desired degrees-per-second |
(module
(function_definition
(function_name_integrate) function_name_integrate
(parameters
(identifier_arr) identifier_arr
(identifier_ddim) identifier_ddim
(default_parameter
(identifier_dim) identifier_dim
(False) False
)default_parameter
(default_parameter
(identifier_is_pressure) identifier_is_pressure
(False) False
)default_parameter
)parameters
(block
(if_statement
(identifier_is_pressure) identifier_is_pressure
(block
(expression_statement
(assignment
(identifier_dim) identifier_dim
(call
(identifier_vert_coord_name) identifier_vert_coord_name
(argument_list
(identifier_ddim) identifier_ddim
)argument_list
)call
)assignment
)expression_statement
)block
)if_statement
(return_statement
(call
(attribute
(parenthesized_expression
(binary_operator
(identifier_arr) identifier_arr
(identifier_ddim) identifier_ddim
)binary_operator
)parenthesized_expression
(identifier_sum) identifier_sum
)attribute
(argument_list
(keyword_argument
(identifier_dim) identifier_dim
(identifier_dim) identifier_dim
)keyword_argument
)argument_list
)call
)return_statement
)block
)function_definition
)module | Integrate along the given dimension. |
(module
(function_definition
(function_name_make_wsgi_app) function_name_make_wsgi_app
(parameters
(default_parameter
(identifier_registry) identifier_registry
(identifier_REGISTRY) identifier_REGISTRY
)default_parameter
)parameters
(block
(function_definition
(function_name_prometheus_app) function_name_prometheus_app
(parameters
(identifier_environ) identifier_environ
(identifier_start_response) identifier_start_response
)parameters
(block
(expression_statement
(assignment
(identifier_params) identifier_params
(call
(identifier_parse_qs) identifier_parse_qs
(argument_list
(call
(attribute
(identifier_environ) identifier_environ
(identifier_get) identifier_get
)attribute
(argument_list
(string_'QUERY_STRING') string_'QUERY_STRING'
(string_'') string_''
)argument_list
)call
)argument_list
)call
)assignment
)expression_statement
(expression_statement
(assignment
(identifier_r) identifier_r
(identifier_registry) identifier_registry
)assignment
)expression_statement
(expression_statement
(assignment
(pattern_list
(identifier_encoder) identifier_encoder
(identifier_content_type) identifier_content_type
)pattern_list
(call
(identifier_choose_encoder) identifier_choose_encoder
(argument_list
(call
(attribute
(identifier_environ) identifier_environ
(identifier_get) identifier_get
)attribute
(argument_list
(string_'HTTP_ACCEPT') string_'HTTP_ACCEPT'
)argument_list
)call
)argument_list
)call
)assignment
)expression_statement
(if_statement
(comparison_operator
(string_'name[]') string_'name[]'
(identifier_params) identifier_params
)comparison_operator
(block
(expression_statement
(assignment
(identifier_r) identifier_r
(call
(attribute
(identifier_r) identifier_r
(identifier_restricted_registry) identifier_restricted_registry
)attribute
(argument_list
(subscript
(identifier_params) identifier_params
(string_'name[]') string_'name[]'
)subscript
)argument_list
)call
)assignment
)expression_statement
)block
)if_statement
(expression_statement
(assignment
(identifier_output) identifier_output
(call
(identifier_encoder) identifier_encoder
(argument_list
(identifier_r) identifier_r
)argument_list
)call
)assignment
)expression_statement
(expression_statement
(assignment
(identifier_status) identifier_status
(call
(identifier_str) identifier_str
(argument_list
(string_'200 OK') string_'200 OK'
)argument_list
)call
)assignment
)expression_statement
(expression_statement
(assignment
(identifier_headers) identifier_headers
(list
(tuple
(call
(identifier_str) identifier_str
(argument_list
(string_'Content-type') string_'Content-type'
)argument_list
)call
(identifier_content_type) identifier_content_type
)tuple
)list
)assignment
)expression_statement
(expression_statement
(call
(identifier_start_response) identifier_start_response
(argument_list
(identifier_status) identifier_status
(identifier_headers) identifier_headers
)argument_list
)call
)expression_statement
(return_statement
(list
(identifier_output) identifier_output
)list
)return_statement
)block
)function_definition
(return_statement
(identifier_prometheus_app) identifier_prometheus_app
)return_statement
)block
)function_definition
)module | Create a WSGI app which serves the metrics from a registry. |
(module
(function_definition
(function_name_create_alarm) function_name_create_alarm
(parameters
(identifier_panel_json) identifier_panel_json
(identifier_abode) identifier_abode
(default_parameter
(identifier_area) identifier_area
(string_'1') string_'1'
)default_parameter
)parameters
(block
(expression_statement
(assignment
(subscript
(identifier_panel_json) identifier_panel_json
(string_'name') string_'name'
)subscript
(attribute
(identifier_CONST) identifier_CONST
(identifier_ALARM_NAME) identifier_ALARM_NAME
)attribute
)assignment
)expression_statement
(expression_statement
(assignment
(subscript
(identifier_panel_json) identifier_panel_json
(string_'id') string_'id'
)subscript
(binary_operator
(attribute
(identifier_CONST) identifier_CONST
(identifier_ALARM_DEVICE_ID) identifier_ALARM_DEVICE_ID
)attribute
(identifier_area) identifier_area
)binary_operator
)assignment
)expression_statement
(expression_statement
(assignment
(subscript
(identifier_panel_json) identifier_panel_json
(string_'type') string_'type'
)subscript
(attribute
(identifier_CONST) identifier_CONST
(identifier_ALARM_TYPE) identifier_ALARM_TYPE
)attribute
)assignment
)expression_statement
(expression_statement
(assignment
(subscript
(identifier_panel_json) identifier_panel_json
(string_'type_tag') string_'type_tag'
)subscript
(attribute
(identifier_CONST) identifier_CONST
(identifier_DEVICE_ALARM) identifier_DEVICE_ALARM
)attribute
)assignment
)expression_statement
(expression_statement
(assignment
(subscript
(identifier_panel_json) identifier_panel_json
(string_'generic_type') string_'generic_type'
)subscript
(attribute
(identifier_CONST) identifier_CONST
(identifier_TYPE_ALARM) identifier_TYPE_ALARM
)attribute
)assignment
)expression_statement
(return_statement
(call
(identifier_AbodeAlarm) identifier_AbodeAlarm
(argument_list
(identifier_panel_json) identifier_panel_json
(identifier_abode) identifier_abode
(identifier_area) identifier_area
)argument_list
)call
)return_statement
)block
)function_definition
)module | Create a new alarm device from a panel response. |
(module
(function_definition
(function_name__get_handler) function_name__get_handler
(parameters
(identifier_self) identifier_self
(identifier_node_id) identifier_node_id
)parameters
(block
(expression_statement
(assignment
(identifier_handler) identifier_handler
(call
(attribute
(call
(attribute
(identifier_self) identifier_self
(identifier__get_attrs) identifier__get_attrs
)attribute
(argument_list
(identifier_node_id) identifier_node_id
)argument_list
)call
(identifier_get) identifier_get
)attribute
(argument_list
(attribute
(identifier_self) identifier_self
(identifier_HANDLER) identifier_HANDLER
)attribute
(attribute
(identifier_self) identifier_self
(identifier__default_handler) identifier__default_handler
)attribute
)argument_list
)call
)assignment
)expression_statement
(if_statement
(not_operator
(call
(identifier_isinstance) identifier_isinstance
(argument_list
(identifier_handler) identifier_handler
(identifier_BasicNodeHandler) identifier_BasicNodeHandler
)argument_list
)call
)not_operator
(block
(expression_statement
(call
(attribute
(identifier_idaapi) identifier_idaapi
(identifier_msg) identifier_msg
)attribute
(argument_list
(call
(attribute
(parenthesized_expression
(concatenated_string
(string_"Invalid handler for node {}: {}. All handlers must inherit from") string_"Invalid handler for node {}: {}. All handlers must inherit from"
(string_"`BasicNodeHandler`.") string_"`BasicNodeHandler`."
)concatenated_string
)parenthesized_expression
(identifier_format) identifier_format
)attribute
(argument_list
(identifier_node_id) identifier_node_id
(identifier_handler) identifier_handler
)argument_list
)call
)argument_list
)call
)expression_statement
(expression_statement
(assignment
(identifier_handler) identifier_handler
(attribute
(identifier_self) identifier_self
(identifier__default_handler) identifier__default_handler
)attribute
)assignment
)expression_statement
)block
)if_statement
(return_statement
(identifier_handler) identifier_handler
)return_statement
)block
)function_definition
)module | Get the handler of a given node. |
(module
(function_definition
(function_name_splice) function_name_splice
(parameters
(identifier_self) identifier_self
(identifier_mark) identifier_mark
(identifier_newdata) identifier_newdata
)parameters
(block
(expression_statement
(call
(attribute
(identifier_self) identifier_self
(identifier_jump_to) identifier_jump_to
)attribute
(argument_list
(identifier_mark) identifier_mark
)argument_list
)call
)expression_statement
(expression_statement
(assignment
(attribute
(identifier_self) identifier_self
(identifier__data) identifier__data
)attribute
(binary_operator
(subscript
(attribute
(identifier_self) identifier_self
(identifier__data) identifier__data
)attribute
(slice
(colon) colon
(attribute
(identifier_self) identifier_self
(identifier__offset) identifier__offset
)attribute
)slice
)subscript
(call
(identifier_bytearray) identifier_bytearray
(argument_list
(identifier_newdata) identifier_newdata
)argument_list
)call
)binary_operator
)assignment
)expression_statement
)block
)function_definition
)module | Replace the data after the marked location with the specified data. |
(module
(function_definition
(function_name_format_load_balancer_configuration) function_name_format_load_balancer_configuration
(parameters
(identifier_result) identifier_result
)parameters
(block
(import_from_statement
(dotted_name
(identifier_collections) identifier_collections
)dotted_name
(dotted_name
(identifier_OrderedDict) identifier_OrderedDict
)dotted_name
)import_from_statement
(expression_statement
(assignment
(identifier_order_dict) identifier_order_dict
(call
(identifier_OrderedDict) identifier_OrderedDict
(argument_list
)argument_list
)call
)assignment
)expression_statement
(if_statement
(comparison_operator
(attribute
(identifier_result) identifier_result
(identifier_private_ip_address) identifier_private_ip_address
)attribute
(None) None
)comparison_operator
(block
(expression_statement
(assignment
(subscript
(identifier_order_dict) identifier_order_dict
(string_'privateIpAddress') string_'privateIpAddress'
)subscript
(call
(identifier_format_private_ip_address) identifier_format_private_ip_address
(argument_list
(attribute
(identifier_result) identifier_result
(identifier_private_ip_address) identifier_private_ip_address
)attribute
)argument_list
)call
)assignment
)expression_statement
)block
)if_statement
(if_statement
(comparison_operator
(attribute
(identifier_result) identifier_result
(identifier_public_ip_address_resource_id) identifier_public_ip_address_resource_id
)attribute
(None) None
)comparison_operator
(block
(expression_statement
(assignment
(subscript
(identifier_order_dict) identifier_order_dict
(string_'publicIpAddressResourceId') string_'publicIpAddressResourceId'
)subscript
(attribute
(identifier_result) identifier_result
(identifier_public_ip_address_resource_id) identifier_public_ip_address_resource_id
)attribute
)assignment
)expression_statement
)block
)if_statement
(if_statement
(comparison_operator
(attribute
(identifier_result) identifier_result
(identifier_load_balancer_resource_id) identifier_load_balancer_resource_id
)attribute
(None) None
)comparison_operator
(block
(expression_statement
(assignment
(subscript
(identifier_order_dict) identifier_order_dict
(string_'loadBalancerResourceId') string_'loadBalancerResourceId'
)subscript
(attribute
(identifier_result) identifier_result
(identifier_load_balancer_resource_id) identifier_load_balancer_resource_id
)attribute
)assignment
)expression_statement
)block
)if_statement
(if_statement
(comparison_operator
(attribute
(identifier_result) identifier_result
(identifier_probe_port) identifier_probe_port
)attribute
(None) None
)comparison_operator
(block
(expression_statement
(assignment
(subscript
(identifier_order_dict) identifier_order_dict
(string_'probePort') string_'probePort'
)subscript
(attribute
(identifier_result) identifier_result
(identifier_probe_port) identifier_probe_port
)attribute
)assignment
)expression_statement
)block
)if_statement
(if_statement
(comparison_operator
(attribute
(identifier_result) identifier_result
(identifier_sql_virtual_machine_instances) identifier_sql_virtual_machine_instances
)attribute
(None) None
)comparison_operator
(block
(expression_statement
(assignment
(subscript
(identifier_order_dict) identifier_order_dict
(string_'sqlVirtualMachineInstances') string_'sqlVirtualMachineInstances'
)subscript
(attribute
(identifier_result) identifier_result
(identifier_sql_virtual_machine_instances) identifier_sql_virtual_machine_instances
)attribute
)assignment
)expression_statement
)block
)if_statement
(return_statement
(identifier_order_dict) identifier_order_dict
)return_statement
)block
)function_definition
)module | Formats the LoadBalancerConfiguration object removing arguments that are empty |
(module
(function_definition
(function_name_create_local_module_dir) function_name_create_local_module_dir
(parameters
(identifier_cache_dir) identifier_cache_dir
(identifier_module_name) identifier_module_name
)parameters
(block
(expression_statement
(call
(attribute
(attribute
(identifier_tf_v1) identifier_tf_v1
(identifier_gfile) identifier_gfile
)attribute
(identifier_MakeDirs) identifier_MakeDirs
)attribute
(argument_list
(identifier_cache_dir) identifier_cache_dir
)argument_list
)call
)expression_statement
(return_statement
(call
(attribute
(attribute
(identifier_os) identifier_os
(identifier_path) identifier_path
)attribute
(identifier_join) identifier_join
)attribute
(argument_list
(identifier_cache_dir) identifier_cache_dir
(identifier_module_name) identifier_module_name
)argument_list
)call
)return_statement
)block
)function_definition
)module | Creates and returns the name of directory where to cache a module. |
(module
(function_definition
(function_name_include_original) function_name_include_original
(parameters
(identifier_dec) identifier_dec
)parameters
(block
(function_definition
(function_name_meta_decorator) function_name_meta_decorator
(parameters
(identifier_method) identifier_method
)parameters
(block
(expression_statement
(assignment
(identifier_decorator) identifier_decorator
(call
(identifier_dec) identifier_dec
(argument_list
(identifier_method) identifier_method
)argument_list
)call
)assignment
)expression_statement
(expression_statement
(assignment
(attribute
(identifier_decorator) identifier_decorator
(identifier__original) identifier__original
)attribute
(identifier_method) identifier_method
)assignment
)expression_statement
(return_statement
(identifier_decorator) identifier_decorator
)return_statement
)block
)function_definition
(return_statement
(identifier_meta_decorator) identifier_meta_decorator
)return_statement
)block
)function_definition
)module | Decorate decorators so they include a copy of the original function. |
(module
(function_definition
(function_name__linkToParent) function_name__linkToParent
(parameters
(identifier_self) identifier_self
(identifier_feature) identifier_feature
(identifier_parentName) identifier_parentName
)parameters
(block
(expression_statement
(assignment
(identifier_parentParts) identifier_parentParts
(call
(attribute
(attribute
(identifier_self) identifier_self
(identifier_byFeatureName) identifier_byFeatureName
)attribute
(identifier_get) identifier_get
)attribute
(argument_list
(identifier_parentName) identifier_parentName
)argument_list
)call
)assignment
)expression_statement
(if_statement
(comparison_operator
(identifier_parentParts) identifier_parentParts
(None) None
)comparison_operator
(block
(raise_statement
(call
(identifier_GFF3Exception) identifier_GFF3Exception
(argument_list
(call
(attribute
(string_"Parent feature does not exist: {}") string_"Parent feature does not exist: {}"
(identifier_format) identifier_format
)attribute
(argument_list
(identifier_parentName) identifier_parentName
)argument_list
)call
(attribute
(identifier_self) identifier_self
(identifier_fileName) identifier_fileName
)attribute
)argument_list
)call
)raise_statement
)block
)if_statement
(for_statement
(identifier_parentPart) identifier_parentPart
(identifier_parentParts) identifier_parentParts
(block
(expression_statement
(call
(attribute
(attribute
(identifier_feature) identifier_feature
(identifier_parents) identifier_parents
)attribute
(identifier_add) identifier_add
)attribute
(argument_list
(identifier_parentPart) identifier_parentPart
)argument_list
)call
)expression_statement
(expression_statement
(call
(attribute
(attribute
(identifier_parentPart) identifier_parentPart
(identifier_children) identifier_children
)attribute
(identifier_add) identifier_add
)attribute
(argument_list
(identifier_feature) identifier_feature
)argument_list
)call
)expression_statement
)block
)for_statement
)block
)function_definition
)module | Link a feature with its children |
(module
(function_definition
(function_name_columns) function_name_columns
(parameters
(identifier_self) identifier_self
)parameters
(block
(expression_statement
(assignment
(identifier_fields) identifier_fields
(list_comprehension
(attribute
(identifier_f) identifier_f
(identifier_label) identifier_label
)attribute
(for_in_clause
(identifier_f) identifier_f
(attribute
(identifier_self) identifier_self
(identifier_form_fields) identifier_form_fields
)attribute
)for_in_clause
(if_clause
(subscript
(attribute
(identifier_self) identifier_self
(identifier_cleaned_data) identifier_cleaned_data
)attribute
(binary_operator
(string_"field_%s_export") string_"field_%s_export"
(attribute
(identifier_f) identifier_f
(identifier_id) identifier_id
)attribute
)binary_operator
)subscript
)if_clause
)list_comprehension
)assignment
)expression_statement
(if_statement
(subscript
(attribute
(identifier_self) identifier_self
(identifier_cleaned_data) identifier_cleaned_data
)attribute
(string_"field_0_export") string_"field_0_export"
)subscript
(block
(expression_statement
(call
(attribute
(identifier_fields) identifier_fields
(identifier_append) identifier_append
)attribute
(argument_list
(attribute
(identifier_self) identifier_self
(identifier_entry_time_name) identifier_entry_time_name
)attribute
)argument_list
)call
)expression_statement
)block
)if_statement
(return_statement
(identifier_fields) identifier_fields
)return_statement
)block
)function_definition
)module | Returns the list of selected column names. |
(module
(function_definition
(function_name_verify) function_name_verify
(parameters
(identifier_backup_path) identifier_backup_path
(identifier_fast) identifier_fast
)parameters
(block
(import_from_statement
(dotted_name
(identifier_PyHardLinkBackup) identifier_PyHardLinkBackup
(identifier_phlb) identifier_phlb
(identifier_verify) identifier_verify
)dotted_name
(dotted_name
(identifier_verify_backup) identifier_verify_backup
)dotted_name
)import_from_statement
(expression_statement
(call
(identifier_verify_backup) identifier_verify_backup
(argument_list
(identifier_backup_path) identifier_backup_path
(identifier_fast) identifier_fast
)argument_list
)call
)expression_statement
)block
)function_definition
)module | Verify a existing backup |
(module
(function_definition
(function_name__post) function_name__post
(parameters
(identifier_self) identifier_self
(identifier_url) identifier_url
(default_parameter
(identifier_attributes) identifier_attributes
(None) None
)default_parameter
(dictionary_splat_pattern
(identifier_kwargs) identifier_kwargs
)dictionary_splat_pattern
)parameters
(block
(return_statement
(call
(attribute
(identifier_self) identifier_self
(identifier__request) identifier__request
)attribute
(argument_list
(string_'post') string_'post'
(identifier_url) identifier_url
(identifier_attributes) identifier_attributes
(dictionary_splat
(identifier_kwargs) identifier_kwargs
)dictionary_splat
)argument_list
)call
)return_statement
)block
)function_definition
)module | Wrapper for the HTTP POST request. |
(module
(function_definition
(function_name_logs) function_name_logs
(parameters
(identifier_self) identifier_self
)parameters
(block
(expression_statement
(assignment
(identifier_url) identifier_url
(binary_operator
(attribute
(identifier_self) identifier_self
(identifier__url) identifier__url
)attribute
(string_"/logs") string_"/logs"
)binary_operator
)assignment
)expression_statement
(return_statement
(call
(identifier__log) identifier__log
(argument_list
(keyword_argument
(identifier_url) identifier_url
(identifier_url) identifier_url
)keyword_argument
(keyword_argument
(identifier_securityHandler) identifier_securityHandler
(attribute
(identifier_self) identifier_self
(identifier__securityHandler) identifier__securityHandler
)attribute
)keyword_argument
(keyword_argument
(identifier_proxy_url) identifier_proxy_url
(attribute
(identifier_self) identifier_self
(identifier__proxy_url) identifier__proxy_url
)attribute
)keyword_argument
(keyword_argument
(identifier_proxy_port) identifier_proxy_port
(attribute
(identifier_self) identifier_self
(identifier__proxy_port) identifier__proxy_port
)attribute
)keyword_argument
)argument_list
)call
)return_statement
)block
)function_definition
)module | returns the portals log information |
(module
(function_definition
(function_name_create_ambiente) function_name_create_ambiente
(parameters
(identifier_self) identifier_self
)parameters
(block
(return_statement
(call
(identifier_Ambiente) identifier_Ambiente
(argument_list
(attribute
(identifier_self) identifier_self
(identifier_networkapi_url) identifier_networkapi_url
)attribute
(attribute
(identifier_self) identifier_self
(identifier_user) identifier_user
)attribute
(attribute
(identifier_self) identifier_self
(identifier_password) identifier_password
)attribute
(attribute
(identifier_self) identifier_self
(identifier_user_ldap) identifier_user_ldap
)attribute
)argument_list
)call
)return_statement
)block
)function_definition
)module | Get an instance of ambiente services facade. |
(module
(function_definition
(function_name_update_view_count_by_uid) function_name_update_view_count_by_uid
(parameters
(identifier_uid) identifier_uid
)parameters
(block
(expression_statement
(assignment
(identifier_entry) identifier_entry
(call
(attribute
(call
(attribute
(identifier_TabWiki) identifier_TabWiki
(identifier_update) identifier_update
)attribute
(argument_list
(keyword_argument
(identifier_view_count) identifier_view_count
(binary_operator
(attribute
(identifier_TabWiki) identifier_TabWiki
(identifier_view_count) identifier_view_count
)attribute
(integer_1) integer_1
)binary_operator
)keyword_argument
)argument_list
)call
(identifier_where) identifier_where
)attribute
(argument_list
(comparison_operator
(attribute
(identifier_TabWiki) identifier_TabWiki
(identifier_uid) identifier_uid
)attribute
(identifier_uid) identifier_uid
)comparison_operator
)argument_list
)call
)assignment
)expression_statement
(expression_statement
(call
(attribute
(identifier_entry) identifier_entry
(identifier_execute) identifier_execute
)attribute
(argument_list
)argument_list
)call
)expression_statement
)block
)function_definition
)module | update the count of wiki, by uid. |
(module
(function_definition
(function_name_compare_urls) function_name_compare_urls
(parameters
(identifier_self) identifier_self
(identifier_url1) identifier_url1
(identifier_url2) identifier_url2
)parameters
(block
(return_statement
(parenthesized_expression
(comparison_operator
(call
(attribute
(identifier_self) identifier_self
(identifier_normalize_url) identifier_normalize_url
)attribute
(argument_list
(identifier_url1) identifier_url1
)argument_list
)call
(call
(attribute
(identifier_self) identifier_self
(identifier_normalize_url) identifier_normalize_url
)attribute
(argument_list
(identifier_url2) identifier_url2
)argument_list
)call
)comparison_operator
)parenthesized_expression
)return_statement
)block
)function_definition
)module | Compare two repo URLs for identity, ignoring incidental differences. |
(module
(function_definition
(function_name_spammer_view) function_name_spammer_view
(parameters
(identifier_request) identifier_request
)parameters
(block
(expression_statement
(assignment
(identifier_context) identifier_context
(call
(identifier_RequestContext) identifier_RequestContext
(argument_list
(identifier_request) identifier_request
(dictionary
)dictionary
)argument_list
)call
)assignment
)expression_statement
(expression_statement
(assignment
(identifier_template) identifier_template
(call
(identifier_Template) identifier_Template
(argument_list
(string_"") string_""
)argument_list
)call
)assignment
)expression_statement
(expression_statement
(assignment
(identifier_response) identifier_response
(call
(identifier_HttpResponse) identifier_HttpResponse
(argument_list
(call
(attribute
(identifier_template) identifier_template
(identifier_render) identifier_render
)attribute
(argument_list
(identifier_context) identifier_context
)argument_list
)call
)argument_list
)call
)assignment
)expression_statement
(expression_statement
(call
(attribute
(identifier_response) identifier_response
(identifier_set_cookie) identifier_set_cookie
)attribute
(argument_list
(identifier_COOKIE_KEY) identifier_COOKIE_KEY
(keyword_argument
(identifier_value) identifier_value
(identifier_COOKIE_SPAM) identifier_COOKIE_SPAM
)keyword_argument
(keyword_argument
(identifier_httponly) identifier_httponly
(True) True
)keyword_argument
(keyword_argument
(identifier_expires) identifier_expires
(binary_operator
(call
(attribute
(identifier_datetime) identifier_datetime
(identifier_now) identifier_now
)attribute
(argument_list
)argument_list
)call
(call
(identifier_timedelta) identifier_timedelta
(argument_list
(keyword_argument
(identifier_days) identifier_days
(integer_3650) integer_3650
)keyword_argument
)argument_list
)call
)binary_operator
)keyword_argument
)argument_list
)call
)expression_statement
(if_statement
(identifier_DJANGOSPAM_LOG) identifier_DJANGOSPAM_LOG
(block
(expression_statement
(call
(identifier_log) identifier_log
(argument_list
(string_"BLOCK RESPONSE") string_"BLOCK RESPONSE"
(attribute
(identifier_request) identifier_request
(identifier_method) identifier_method
)attribute
(attribute
(identifier_request) identifier_request
(identifier_path_info) identifier_path_info
)attribute
(call
(attribute
(attribute
(identifier_request) identifier_request
(identifier_META) identifier_META
)attribute
(identifier_get) identifier_get
)attribute
(argument_list
(string_"HTTP_USER_AGENT") string_"HTTP_USER_AGENT"
(string_"undefined") string_"undefined"
)argument_list
)call
)argument_list
)call
)expression_statement
)block
)if_statement
(return_statement
(identifier_response) identifier_response
)return_statement
)block
)function_definition
)module | View for setting cookies on spammers. |
(module
(function_definition
(function_name_calculate_manual_reading) function_name_calculate_manual_reading
(parameters
(typed_parameter
(identifier_basic_data) identifier_basic_data
(type
(identifier_BasicMeterData) identifier_BasicMeterData
)type
)typed_parameter
)parameters
(type
(identifier_Reading) identifier_Reading
)type
(block
(expression_statement
(assignment
(identifier_t_start) identifier_t_start
(attribute
(identifier_basic_data) identifier_basic_data
(identifier_previous_register_read_datetime) identifier_previous_register_read_datetime
)attribute
)assignment
)expression_statement
(expression_statement
(assignment
(identifier_t_end) identifier_t_end
(attribute
(identifier_basic_data) identifier_basic_data
(identifier_current_register_read_datetime) identifier_current_register_read_datetime
)attribute
)assignment
)expression_statement
(expression_statement
(assignment
(identifier_read_start) identifier_read_start
(attribute
(identifier_basic_data) identifier_basic_data
(identifier_previous_register_read) identifier_previous_register_read
)attribute
)assignment
)expression_statement
(expression_statement
(assignment
(identifier_read_end) identifier_read_end
(attribute
(identifier_basic_data) identifier_basic_data
(identifier_current_register_read) identifier_current_register_read
)attribute
)assignment
)expression_statement
(expression_statement
(assignment
(identifier_value) identifier_value
(attribute
(identifier_basic_data) identifier_basic_data
(identifier_quantity) identifier_quantity
)attribute
)assignment
)expression_statement
(expression_statement
(assignment
(identifier_uom) identifier_uom
(attribute
(identifier_basic_data) identifier_basic_data
(identifier_uom) identifier_uom
)attribute
)assignment
)expression_statement
(expression_statement
(assignment
(identifier_quality_method) identifier_quality_method
(attribute
(identifier_basic_data) identifier_basic_data
(identifier_current_quality_method) identifier_current_quality_method
)attribute
)assignment
)expression_statement
(return_statement
(call
(identifier_Reading) identifier_Reading
(argument_list
(identifier_t_start) identifier_t_start
(identifier_t_end) identifier_t_end
(identifier_value) identifier_value
(identifier_uom) identifier_uom
(identifier_quality_method) identifier_quality_method
(string_"") string_""
(string_"") string_""
(identifier_read_start) identifier_read_start
(identifier_read_end) identifier_read_end
)argument_list
)call
)return_statement
)block
)function_definition
)module | Calculate the interval between two manual readings |
(module
(function_definition
(function_name_to_rec) function_name_to_rec
(parameters
(identifier_samples) identifier_samples
(default_parameter
(identifier_default_keys) identifier_default_keys
(None) None
)default_parameter
)parameters
(block
(expression_statement
(assignment
(identifier_recs) identifier_recs
(call
(identifier_samples_to_records) identifier_samples_to_records
(argument_list
(list_comprehension
(call
(identifier_normalize_missing) identifier_normalize_missing
(argument_list
(call
(attribute
(identifier_utils) identifier_utils
(identifier_to_single_data) identifier_to_single_data
)attribute
(argument_list
(identifier_x) identifier_x
)argument_list
)call
)argument_list
)call
(for_in_clause
(identifier_x) identifier_x
(identifier_samples) identifier_samples
)for_in_clause
)list_comprehension
(identifier_default_keys) identifier_default_keys
)argument_list
)call
)assignment
)expression_statement
(return_statement
(list_comprehension
(list
(identifier_x) identifier_x
)list
(for_in_clause
(identifier_x) identifier_x
(identifier_recs) identifier_recs
)for_in_clause
)list_comprehension
)return_statement
)block
)function_definition
)module | Convert inputs into CWL records, useful for single item parallelization. |
(module
(function_definition
(function_name_current) function_name_current
(parameters
(identifier_self) identifier_self
)parameters
(block
(expression_statement
(assignment
(identifier_config) identifier_config
(call
(attribute
(identifier_self) identifier_self
(identifier_alembic_config) identifier_alembic_config
)attribute
(argument_list
)argument_list
)call
)assignment
)expression_statement
(expression_statement
(assignment
(identifier_script) identifier_script
(call
(attribute
(identifier_ScriptDirectory) identifier_ScriptDirectory
(identifier_from_config) identifier_from_config
)attribute
(argument_list
(identifier_config) identifier_config
)argument_list
)call
)assignment
)expression_statement
(expression_statement
(assignment
(identifier_revision) identifier_revision
(string_'base') string_'base'
)assignment
)expression_statement
(function_definition
(function_name_display_version) function_name_display_version
(parameters
(identifier_rev) identifier_rev
(identifier_context) identifier_context
)parameters
(block
(for_statement
(identifier_rev) identifier_rev
(call
(attribute
(identifier_script) identifier_script
(identifier_get_all_current) identifier_get_all_current
)attribute
(argument_list
(identifier_rev) identifier_rev
)argument_list
)call
(block
(nonlocal_statement
(identifier_revision) identifier_revision
)nonlocal_statement
(expression_statement
(assignment
(identifier_revision) identifier_revision
(call
(attribute
(identifier_rev) identifier_rev
(identifier_cmd_format) identifier_cmd_format
)attribute
(argument_list
(False) False
)argument_list
)call
)assignment
)expression_statement
)block
)for_statement
(return_statement
(list
)list
)return_statement
)block
)function_definition
(with_statement
(with_clause
(with_item
(call
(identifier_EnvironmentContext) identifier_EnvironmentContext
(argument_list
(identifier_config) identifier_config
(identifier_script) identifier_script
(keyword_argument
(identifier_fn) identifier_fn
(identifier_display_version) identifier_display_version
)keyword_argument
)argument_list
)call
)with_item
)with_clause
(block
(expression_statement
(call
(attribute
(identifier_script) identifier_script
(identifier_run_env) identifier_run_env
)attribute
(argument_list
)argument_list
)call
)expression_statement
)block
)with_statement
(return_statement
(identifier_revision) identifier_revision
)return_statement
)block
)function_definition
)module | Display the current database revision |
(module
(function_definition
(function_name_outfile) function_name_outfile
(parameters
(identifier_self) identifier_self
)parameters
(block
(return_statement
(call
(attribute
(attribute
(identifier_os) identifier_os
(identifier_path) identifier_path
)attribute
(identifier_join) identifier_join
)attribute
(argument_list
(subscript
(identifier_OPTIONS) identifier_OPTIONS
(string_'base_dir') string_'base_dir'
)subscript
(call
(attribute
(string_'{0}.{1}') string_'{0}.{1}'
(identifier_format) identifier_format
)attribute
(argument_list
(attribute
(identifier_self) identifier_self
(identifier_name) identifier_name
)attribute
(subscript
(identifier_OPTIONS) identifier_OPTIONS
(string_'out_ext') string_'out_ext'
)subscript
)argument_list
)call
)argument_list
)call
)return_statement
)block
)function_definition
)module | Path of the output file |
(module
(function_definition
(function_name_score_small_straight_yatzy) function_name_score_small_straight_yatzy
(parameters
(typed_parameter
(identifier_dice) identifier_dice
(type
(generic_type
(identifier_List) identifier_List
(type_parameter
(type
(identifier_int) identifier_int
)type
)type_parameter
)generic_type
)type
)typed_parameter
)parameters
(type
(identifier_int) identifier_int
)type
(block
(expression_statement
(assignment
(identifier_dice_set) identifier_dice_set
(call
(identifier_set) identifier_set
(argument_list
(identifier_dice) identifier_dice
)argument_list
)call
)assignment
)expression_statement
(if_statement
(call
(identifier__are_two_sets_equal) identifier__are_two_sets_equal
(argument_list
(set
(integer_1) integer_1
(integer_2) integer_2
(integer_3) integer_3
(integer_4) integer_4
(integer_5) integer_5
)set
(identifier_dice_set) identifier_dice_set
)argument_list
)call
(block
(return_statement
(call
(identifier_sum) identifier_sum
(argument_list
(identifier_dice) identifier_dice
)argument_list
)call
)return_statement
)block
)if_statement
(return_statement
(integer_0) integer_0
)return_statement
)block
)function_definition
)module | Small straight scoring according to yatzy rules |
(module
(function_definition
(function_name_model) function_name_model
(parameters
(identifier_self) identifier_self
)parameters
(block
(try_statement
(block
(return_statement
(call
(attribute
(call
(attribute
(attribute
(identifier_self) identifier_self
(identifier_data) identifier_data
)attribute
(identifier_get) identifier_get
)attribute
(argument_list
(string_'identity') string_'identity'
)argument_list
)call
(identifier_get) identifier_get
)attribute
(argument_list
(string_'model_name') string_'model_name'
)argument_list
)call
)return_statement
)block
(except_clause
(tuple
(identifier_KeyError) identifier_KeyError
(identifier_AttributeError) identifier_AttributeError
)tuple
(block
(return_statement
(call
(attribute
(identifier_self) identifier_self
(identifier_device_status_simple) identifier_device_status_simple
)attribute
(argument_list
(string_'') string_''
)argument_list
)call
)return_statement
)block
)except_clause
)try_statement
)block
)function_definition
)module | Return the model name of the printer. |
(module
(function_definition
(function_name_tools) function_name_tools
(parameters
(identifier_self) identifier_self
(default_parameter
(identifier_extra_params) identifier_extra_params
(None) None
)default_parameter
)parameters
(block
(return_statement
(call
(attribute
(attribute
(identifier_self) identifier_self
(identifier_api) identifier_api
)attribute
(identifier__get_json) identifier__get_json
)attribute
(argument_list
(identifier_SpaceTool) identifier_SpaceTool
(keyword_argument
(identifier_space) identifier_space
(identifier_self) identifier_self
)keyword_argument
(keyword_argument
(identifier_rel_path) identifier_rel_path
(call
(attribute
(identifier_self) identifier_self
(identifier__build_rel_path) identifier__build_rel_path
)attribute
(argument_list
(string_'space_tools') string_'space_tools'
)argument_list
)call
)keyword_argument
(keyword_argument
(identifier_extra_params) identifier_extra_params
(identifier_extra_params) identifier_extra_params
)keyword_argument
)argument_list
)call
)return_statement
)block
)function_definition
)module | All Tools in this Space |
(module
(function_definition
(function_name_main) function_name_main
(parameters
(default_parameter
(identifier_port) identifier_port
(integer_8222) integer_8222
)default_parameter
)parameters
(block
(expression_statement
(assignment
(identifier_loop) identifier_loop
(call
(attribute
(identifier_asyncio) identifier_asyncio
(identifier_get_event_loop) identifier_get_event_loop
)attribute
(argument_list
)argument_list
)call
)assignment
)expression_statement
(expression_statement
(assignment
(identifier_environ) identifier_environ
(dictionary
(pair
(string_'hello') string_'hello'
(string_'world') string_'world'
)pair
)dictionary
)assignment
)expression_statement
(function_definition
(function_name_create_server) function_name_create_server
(parameters
)parameters
(block
(return_statement
(call
(identifier_MySSHServer) identifier_MySSHServer
(argument_list
(lambda
(identifier_environ) identifier_environ
)lambda
)argument_list
)call
)return_statement
)block
)function_definition
(expression_statement
(call
(identifier_print) identifier_print
(argument_list
(binary_operator
(string_'Listening on :%i') string_'Listening on :%i'
(identifier_port) identifier_port
)binary_operator
)argument_list
)call
)expression_statement
(expression_statement
(call
(identifier_print) identifier_print
(argument_list
(binary_operator
(string_'To connect, do "ssh localhost -p %i"') string_'To connect, do "ssh localhost -p %i"'
(identifier_port) identifier_port
)binary_operator
)argument_list
)call
)expression_statement
(expression_statement
(call
(attribute
(identifier_loop) identifier_loop
(identifier_run_until_complete) identifier_run_until_complete
)attribute
(argument_list
(call
(attribute
(identifier_asyncssh) identifier_asyncssh
(identifier_create_server) identifier_create_server
)attribute
(argument_list
(identifier_create_server) identifier_create_server
(string_'') string_''
(identifier_port) identifier_port
(keyword_argument
(identifier_server_host_keys) identifier_server_host_keys
(list
(string_'/etc/ssh/ssh_host_dsa_key') string_'/etc/ssh/ssh_host_dsa_key'
)list
)keyword_argument
)argument_list
)call
)argument_list
)call
)expression_statement
(expression_statement
(call
(attribute
(identifier_loop) identifier_loop
(identifier_run_forever) identifier_run_forever
)attribute
(argument_list
)argument_list
)call
)expression_statement
)block
)function_definition
)module | Example that starts the REPL through an SSH server. |
(module
(function_definition
(function_name_get_devices) function_name_get_devices
(parameters
(identifier_self) identifier_self
(typed_default_parameter
(identifier_covers_only) identifier_covers_only
(type
(identifier_bool) identifier_bool
)type
(True) True
)typed_default_parameter
)parameters
(type
(identifier_list) identifier_list
)type
(block
(import_from_statement
(relative_import
(import_prefix
)import_prefix
(dotted_name
(identifier_device) identifier_device
)dotted_name
)relative_import
(dotted_name
(identifier_MyQDevice) identifier_MyQDevice
)dotted_name
)import_from_statement
(expression_statement
(call
(attribute
(identifier__LOGGER) identifier__LOGGER
(identifier_debug) identifier_debug
)attribute
(argument_list
(string_'Retrieving list of devices') string_'Retrieving list of devices'
)argument_list
)call
)expression_statement
(expression_statement
(assignment
(identifier_devices_resp) identifier_devices_resp
(await
(call
(attribute
(identifier_self) identifier_self
(identifier__request) identifier__request
)attribute
(argument_list
(string_'get') string_'get'
(identifier_DEVICE_LIST_ENDPOINT) identifier_DEVICE_LIST_ENDPOINT
)argument_list
)call
)await
)assignment
)expression_statement
(expression_statement
(assignment
(identifier_device_list) identifier_device_list
(list
)list
)assignment
)expression_statement
(if_statement
(comparison_operator
(identifier_devices_resp) identifier_devices_resp
(None) None
)comparison_operator
(block
(return_statement
(identifier_device_list) identifier_device_list
)return_statement
)block
)if_statement
(for_statement
(identifier_device) identifier_device
(subscript
(identifier_devices_resp) identifier_devices_resp
(string_'Devices') string_'Devices'
)subscript
(block
(if_statement
(boolean_operator
(not_operator
(identifier_covers_only) identifier_covers_only
)not_operator
(line_continuation_\) line_continuation_\
(comparison_operator
(subscript
(identifier_device) identifier_device
(string_'MyQDeviceTypeName') string_'MyQDeviceTypeName'
)subscript
(identifier_SUPPORTED_DEVICE_TYPE_NAMES) identifier_SUPPORTED_DEVICE_TYPE_NAMES
)comparison_operator
)boolean_operator
(block
(expression_statement
(call
(attribute
(attribute
(identifier_self) identifier_self
(identifier__devices) identifier__devices
)attribute
(identifier_append) identifier_append
)attribute
(argument_list
(dictionary
(pair
(string_'device_id') string_'device_id'
(subscript
(identifier_device) identifier_device
(string_'MyQDeviceId') string_'MyQDeviceId'
)subscript
)pair
(pair
(string_'device_info') string_'device_info'
(identifier_device) identifier_device
)pair
)dictionary
)argument_list
)call
)expression_statement
(expression_statement
(assignment
(identifier_myq_device) identifier_myq_device
(call
(identifier_MyQDevice) identifier_MyQDevice
(argument_list
(subscript
(attribute
(identifier_self) identifier_self
(identifier__devices) identifier__devices
)attribute
(unary_operator
(integer_1) integer_1
)unary_operator
)subscript
(attribute
(identifier_self) identifier_self
(identifier__brand) identifier__brand
)attribute
(identifier_self) identifier_self
)argument_list
)call
)assignment
)expression_statement
(expression_statement
(call
(attribute
(identifier_device_list) identifier_device_list
(identifier_append) identifier_append
)attribute
(argument_list
(identifier_myq_device) identifier_myq_device
)argument_list
)call
)expression_statement
)block
)if_statement
)block
)for_statement
(expression_statement
(call
(attribute
(identifier_self) identifier_self
(identifier__store_device_states) identifier__store_device_states
)attribute
(argument_list
(call
(attribute
(identifier_devices_resp) identifier_devices_resp
(identifier_get) identifier_get
)attribute
(argument_list
(string_'Devices') string_'Devices'
(list
)list
)argument_list
)call
)argument_list
)call
)expression_statement
(expression_statement
(call
(attribute
(identifier__LOGGER) identifier__LOGGER
(identifier_debug) identifier_debug
)attribute
(argument_list
(string_'List of devices retrieved') string_'List of devices retrieved'
)argument_list
)call
)expression_statement
(return_statement
(identifier_device_list) identifier_device_list
)return_statement
)block
)function_definition
)module | Get a list of all devices associated with the account. |
(module
(function_definition
(function_name_create_prefix_dir) function_name_create_prefix_dir
(parameters
(identifier_self) identifier_self
(identifier_path) identifier_path
(identifier_fmt) identifier_fmt
)parameters
(block
(expression_statement
(call
(identifier_create_prefix_dir) identifier_create_prefix_dir
(argument_list
(call
(attribute
(identifier_self) identifier_self
(identifier__get_os_path) identifier__get_os_path
)attribute
(argument_list
(call
(attribute
(identifier_path) identifier_path
(identifier_strip) identifier_strip
)attribute
(argument_list
(string_'/') string_'/'
)argument_list
)call
)argument_list
)call
(identifier_fmt) identifier_fmt
)argument_list
)call
)expression_statement
)block
)function_definition
)module | Create the prefix dir, if missing |
(module
(function_definition
(function_name_make_err) function_name_make_err
(parameters
(identifier_self) identifier_self
(typed_parameter
(identifier_body) identifier_body
(type
(identifier_str) identifier_str
)type
)typed_parameter
(typed_default_parameter
(identifier_key) identifier_key
(type
(identifier_str) identifier_str
)type
(string_'report path') string_'report path'
)typed_default_parameter
)parameters
(type
(identifier_InvalidRequest) identifier_InvalidRequest
)type
(block
(expression_statement
(assignment
(identifier_msg) identifier_msg
(string_f'Could not find {key} in {self.__class__.__name__} response\n') string_f'Could not find {key} in {self.__class__.__name__} response\n'
)assignment
)expression_statement
(return_statement
(call
(identifier_InvalidRequest) identifier_InvalidRequest
(argument_list
(binary_operator
(identifier_msg) identifier_msg
(identifier_body) identifier_body
)binary_operator
)argument_list
)call
)return_statement
)block
)function_definition
)module | Returns an InvalidRequest exception with formatted error message |
(module
(function_definition
(function_name_aes_kdf) function_name_aes_kdf
(parameters
(identifier_key) identifier_key
(identifier_rounds) identifier_rounds
(default_parameter
(identifier_password) identifier_password
(None) None
)default_parameter
(default_parameter
(identifier_keyfile) identifier_keyfile
(None) None
)default_parameter
)parameters
(block
(expression_statement
(assignment
(identifier_cipher) identifier_cipher
(call
(attribute
(identifier_AES) identifier_AES
(identifier_new) identifier_new
)attribute
(argument_list
(identifier_key) identifier_key
(attribute
(identifier_AES) identifier_AES
(identifier_MODE_ECB) identifier_MODE_ECB
)attribute
)argument_list
)call
)assignment
)expression_statement
(expression_statement
(assignment
(identifier_key_composite) identifier_key_composite
(call
(identifier_compute_key_composite) identifier_compute_key_composite
(argument_list
(keyword_argument
(identifier_password) identifier_password
(identifier_password) identifier_password
)keyword_argument
(keyword_argument
(identifier_keyfile) identifier_keyfile
(identifier_keyfile) identifier_keyfile
)keyword_argument
)argument_list
)call
)assignment
)expression_statement
(expression_statement
(assignment
(identifier_transformed_key) identifier_transformed_key
(identifier_key_composite) identifier_key_composite
)assignment
)expression_statement
(for_statement
(identifier__) identifier__
(call
(identifier_range) identifier_range
(argument_list
(integer_0) integer_0
(identifier_rounds) identifier_rounds
)argument_list
)call
(block
(expression_statement
(assignment
(identifier_transformed_key) identifier_transformed_key
(call
(attribute
(identifier_cipher) identifier_cipher
(identifier_encrypt) identifier_encrypt
)attribute
(argument_list
(identifier_transformed_key) identifier_transformed_key
)argument_list
)call
)assignment
)expression_statement
)block
)for_statement
(return_statement
(call
(attribute
(call
(attribute
(identifier_hashlib) identifier_hashlib
(identifier_sha256) identifier_sha256
)attribute
(argument_list
(identifier_transformed_key) identifier_transformed_key
)argument_list
)call
(identifier_digest) identifier_digest
)attribute
(argument_list
)argument_list
)call
)return_statement
)block
)function_definition
)module | Set up a context for AES128-ECB encryption to find transformed_key |
(module
(function_definition
(function_name_shape) function_name_shape
(parameters
(identifier_self) identifier_self
(default_parameter
(identifier_shape) identifier_shape
(None) None
)default_parameter
)parameters
(block
(if_statement
(comparison_operator
(identifier_shape) identifier_shape
(None) None
)comparison_operator
(block
(return_statement
(attribute
(identifier_self) identifier_self
(identifier__shape) identifier__shape
)attribute
)return_statement
)block
)if_statement
(expression_statement
(assignment
(pattern_list
(identifier_data) identifier_data
(identifier_color) identifier_color
)pattern_list
(call
(attribute
(attribute
(attribute
(identifier_self) identifier_self
(identifier_renderer) identifier_renderer
)attribute
(identifier_manager) identifier_manager
)attribute
(identifier_set_shape) identifier_set_shape
)attribute
(argument_list
(attribute
(attribute
(identifier_self) identifier_self
(identifier_model) identifier_model
)attribute
(identifier_id) identifier_id
)attribute
(identifier_shape) identifier_shape
)argument_list
)call
)assignment
)expression_statement
(expression_statement
(assignment
(attribute
(attribute
(identifier_self) identifier_self
(identifier_model) identifier_model
)attribute
(identifier_data) identifier_data
)attribute
(identifier_data) identifier_data
)assignment
)expression_statement
(expression_statement
(assignment
(attribute
(identifier_self) identifier_self
(identifier_color) identifier_color
)attribute
(identifier_color) identifier_color
)assignment
)expression_statement
(expression_statement
(assignment
(attribute
(identifier_self) identifier_self
(identifier__shape) identifier__shape
)attribute
(identifier_shape) identifier_shape
)assignment
)expression_statement
)block
)function_definition
)module | We need to shift buffers in order to change shape |
(module
(function_definition
(function_name_guess_fill_char) function_name_guess_fill_char
(parameters
(identifier_left_comp) identifier_left_comp
(identifier_right_comp) identifier_right_comp
)parameters
(block
(return_statement
(string_"*") string_"*"
)return_statement
(if_statement
(parenthesized_expression
(boolean_operator
(comparison_operator
(attribute
(identifier_left_comp) identifier_left_comp
(identifier_src) identifier_src
)attribute
(attribute
(identifier_right_comp) identifier_right_comp
(identifier_src) identifier_src
)attribute
)comparison_operator
(comparison_operator
(attribute
(identifier_left_comp) identifier_left_comp
(identifier_strand) identifier_strand
)attribute
(attribute
(identifier_right_comp) identifier_right_comp
(identifier_strand) identifier_strand
)attribute
)comparison_operator
)boolean_operator
)parenthesized_expression
(block
(if_statement
(comparison_operator
(attribute
(identifier_left_comp) identifier_left_comp
(identifier_end) identifier_end
)attribute
(attribute
(identifier_right_comp) identifier_right_comp
(identifier_start) identifier_start
)attribute
)comparison_operator
(block
(return_statement
(string_"-") string_"-"
)return_statement
)block
)if_statement
)block
)if_statement
(return_statement
(string_"*") string_"*"
)return_statement
)block
)function_definition
)module | For the case where there is no annotated synteny we will try to guess it |
(module
(function_definition
(function_name_add) function_name_add
(parameters
(identifier_args) identifier_args
)parameters
(block
(expression_statement
(assignment
(identifier_session) identifier_session
(call
(attribute
(identifier_c) identifier_c
(identifier_Session) identifier_Session
)attribute
(argument_list
(identifier_args) identifier_args
)argument_list
)call
)assignment
)expression_statement
(if_statement
(comparison_operator
(subscript
(identifier_args) identifier_args
(string_"name") string_"name"
)subscript
(call
(attribute
(attribute
(identifier_session) identifier_session
(identifier_feeds) identifier_feeds
)attribute
(identifier_sections) identifier_sections
)attribute
(argument_list
)argument_list
)call
)comparison_operator
(block
(expression_statement
(call
(attribute
(identifier_sys) identifier_sys
(identifier_exit) identifier_exit
)attribute
(argument_list
(string_"You already have a feed with that name.") string_"You already have a feed with that name."
)argument_list
)call
)expression_statement
)block
)if_statement
(if_statement
(comparison_operator
(subscript
(identifier_args) identifier_args
(string_"name") string_"name"
)subscript
(list
(string_"all") string_"all"
(string_"DEFAULT") string_"DEFAULT"
)list
)comparison_operator
(block
(expression_statement
(call
(attribute
(identifier_sys) identifier_sys
(identifier_exit) identifier_exit
)attribute
(argument_list
(call
(attribute
(parenthesized_expression
(concatenated_string
(string_"greg uses ") string_"greg uses "
(string_"{}") string_"{}"
(string_" for a special purpose.") string_" for a special purpose."
(string_"Please choose another name for your feed.") string_"Please choose another name for your feed."
)concatenated_string
)parenthesized_expression
(identifier_format) identifier_format
)attribute
(argument_list
(subscript
(identifier_args) identifier_args
(string_"name") string_"name"
)subscript
)argument_list
)call
)argument_list
)call
)expression_statement
)block
)if_statement
(expression_statement
(assignment
(identifier_entry) identifier_entry
(dictionary
)dictionary
)assignment
)expression_statement
(for_statement
(pattern_list
(identifier_key) identifier_key
(identifier_value) identifier_value
)pattern_list
(call
(attribute
(identifier_args) identifier_args
(identifier_items) identifier_items
)attribute
(argument_list
)argument_list
)call
(block
(if_statement
(boolean_operator
(boolean_operator
(comparison_operator
(identifier_value) identifier_value
(None) None
)comparison_operator
(comparison_operator
(identifier_key) identifier_key
(string_"func") string_"func"
)comparison_operator
)boolean_operator
(comparison_operator
(identifier_key) identifier_key
(string_"name") string_"name"
)comparison_operator
)boolean_operator
(block
(expression_statement
(assignment
(subscript
(identifier_entry) identifier_entry
(identifier_key) identifier_key
)subscript
(identifier_value) identifier_value
)assignment
)expression_statement
)block
)if_statement
)block
)for_statement
(expression_statement
(assignment
(subscript
(attribute
(identifier_session) identifier_session
(identifier_feeds) identifier_feeds
)attribute
(subscript
(identifier_args) identifier_args
(string_"name") string_"name"
)subscript
)subscript
(identifier_entry) identifier_entry
)assignment
)expression_statement
(with_statement
(with_clause
(with_item
(as_pattern
(call
(identifier_open) identifier_open
(argument_list
(attribute
(identifier_session) identifier_session
(identifier_data_filename) identifier_data_filename
)attribute
(string_'w') string_'w'
)argument_list
)call
(as_pattern_target
(identifier_configfile) identifier_configfile
)as_pattern_target
)as_pattern
)with_item
)with_clause
(block
(expression_statement
(call
(attribute
(attribute
(identifier_session) identifier_session
(identifier_feeds) identifier_feeds
)attribute
(identifier_write) identifier_write
)attribute
(argument_list
(identifier_configfile) identifier_configfile
)argument_list
)call
)expression_statement
)block
)with_statement
)block
)function_definition
)module | Add a new feed |
(module
(function_definition
(function_name_render_item) function_name_render_item
(parameters
(identifier_self) identifier_self
(identifier_contentitem) identifier_contentitem
)parameters
(block
(expression_statement
(assignment
(identifier_plugin) identifier_plugin
(attribute
(identifier_contentitem) identifier_contentitem
(identifier_plugin) identifier_plugin
)attribute
)assignment
)expression_statement
(if_statement
(boolean_operator
(not_operator
(attribute
(identifier_plugin) identifier_plugin
(identifier_search_output) identifier_search_output
)attribute
)not_operator
(not_operator
(attribute
(identifier_plugin) identifier_plugin
(identifier_search_fields) identifier_search_fields
)attribute
)not_operator
)boolean_operator
(block
(raise_statement
(identifier_SkipItem) identifier_SkipItem
)raise_statement
)block
)if_statement
(if_statement
(not_operator
(attribute
(identifier_plugin) identifier_plugin
(identifier_search_output) identifier_search_output
)attribute
)not_operator
(block
(expression_statement
(assignment
(identifier_output) identifier_output
(call
(identifier_ContentItemOutput) identifier_ContentItemOutput
(argument_list
(string_'') string_''
(keyword_argument
(identifier_cacheable) identifier_cacheable
(False) False
)keyword_argument
)argument_list
)call
)assignment
)expression_statement
)block
(else_clause
(block
(expression_statement
(assignment
(identifier_output) identifier_output
(call
(attribute
(call
(identifier_super) identifier_super
(argument_list
(identifier_SearchRenderingPipe) identifier_SearchRenderingPipe
(identifier_self) identifier_self
)argument_list
)call
(identifier_render_item) identifier_render_item
)attribute
(argument_list
(identifier_contentitem) identifier_contentitem
)argument_list
)call
)assignment
)expression_statement
)block
)else_clause
)if_statement
(if_statement
(attribute
(identifier_plugin) identifier_plugin
(identifier_search_fields) identifier_search_fields
)attribute
(block
(expression_statement
(augmented_assignment
(attribute
(identifier_output) identifier_output
(identifier_html) identifier_html
)attribute
(call
(attribute
(identifier_plugin) identifier_plugin
(identifier_get_search_text) identifier_get_search_text
)attribute
(argument_list
(identifier_contentitem) identifier_contentitem
)argument_list
)call
)augmented_assignment
)expression_statement
(expression_statement
(assignment
(attribute
(identifier_output) identifier_output
(identifier_cacheable) identifier_cacheable
)attribute
(False) False
)assignment
)expression_statement
)block
)if_statement
(return_statement
(identifier_output) identifier_output
)return_statement
)block
)function_definition
)module | Render the item - but render as search text instead. |
(module
(function_definition
(function_name_tool_options_from_global) function_name_tool_options_from_global
(parameters
(identifier_global_options) identifier_global_options
(identifier_num_jobs) identifier_num_jobs
)parameters
(block
(expression_statement
(assignment
(identifier_internal_opt) identifier_internal_opt
(list
(string_"whitelist") string_"whitelist"
(string_"blacklist") string_"blacklist"
(string_"fix_what_you_can") string_"fix_what_you_can"
)list
)assignment
)expression_statement
(expression_statement
(assignment
(identifier_queue_object) identifier_queue_object
(call
(identifier__obtain_queue) identifier__obtain_queue
(argument_list
(identifier_num_jobs) identifier_num_jobs
)argument_list
)call
)assignment
)expression_statement
(expression_statement
(assignment
(identifier_translate) identifier_translate
(call
(identifier_defaultdict) identifier_defaultdict
(argument_list
(lambda
(parenthesized_expression
(lambda
(lambda_parameters
(identifier_x) identifier_x
)lambda_parameters
(identifier_x) identifier_x
)lambda
)parenthesized_expression
)lambda
(keyword_argument
(identifier_log_technical_terms_to) identifier_log_technical_terms_to
(lambda
(lambda_parameters
(identifier__) identifier__
)lambda_parameters
(identifier_queue_object) identifier_queue_object
)lambda
)keyword_argument
)argument_list
)call
)assignment
)expression_statement
(expression_statement
(assignment
(identifier_tool_options) identifier_tool_options
(call
(identifier_OrderedDict) identifier_OrderedDict
(argument_list
)argument_list
)call
)assignment
)expression_statement
(for_statement
(identifier_key) identifier_key
(call
(identifier_sorted) identifier_sorted
(argument_list
(call
(attribute
(identifier_global_options) identifier_global_options
(identifier_keys) identifier_keys
)attribute
(argument_list
)argument_list
)call
)argument_list
)call
(block
(if_statement
(boolean_operator
(comparison_operator
(identifier_key) identifier_key
(identifier_internal_opt) identifier_internal_opt
)comparison_operator
(comparison_operator
(subscript
(identifier_global_options) identifier_global_options
(identifier_key) identifier_key
)subscript
(None) None
)comparison_operator
)boolean_operator
(block
(expression_statement
(assignment
(subscript
(identifier_tool_options) identifier_tool_options
(identifier_key) identifier_key
)subscript
(call
(subscript
(identifier_translate) identifier_translate
(identifier_key) identifier_key
)subscript
(argument_list
(subscript
(identifier_global_options) identifier_global_options
(identifier_key) identifier_key
)subscript
)argument_list
)call
)assignment
)expression_statement
)block
)if_statement
)block
)for_statement
(return_statement
(identifier_tool_options) identifier_tool_options
)return_statement
)block
)function_definition
)module | From an argparse namespace, get a dict of options for the tools. |
(module
(function_definition
(function_name_convert_bool) function_name_convert_bool
(parameters
(identifier_key) identifier_key
(identifier_val) identifier_val
(identifier_attr_type) identifier_attr_type
(default_parameter
(identifier_attr) identifier_attr
(dictionary
)dictionary
)default_parameter
(default_parameter
(identifier_cdata) identifier_cdata
(False) False
)default_parameter
)parameters
(block
(expression_statement
(call
(attribute
(identifier_LOG) identifier_LOG
(identifier_info) identifier_info
)attribute
(argument_list
(binary_operator
(string_'Inside convert_bool(): key="%s", val="%s", type(val) is: "%s"') string_'Inside convert_bool(): key="%s", val="%s", type(val) is: "%s"'
(tuple
(call
(identifier_unicode_me) identifier_unicode_me
(argument_list
(identifier_key) identifier_key
)argument_list
)call
(call
(identifier_unicode_me) identifier_unicode_me
(argument_list
(identifier_val) identifier_val
)argument_list
)call
(attribute
(call
(identifier_type) identifier_type
(argument_list
(identifier_val) identifier_val
)argument_list
)call
(identifier___name__) identifier___name__
)attribute
)tuple
)binary_operator
)argument_list
)call
)expression_statement
(expression_statement
(assignment
(pattern_list
(identifier_key) identifier_key
(identifier_attr) identifier_attr
)pattern_list
(call
(identifier_make_valid_xml_name) identifier_make_valid_xml_name
(argument_list
(identifier_key) identifier_key
(identifier_attr) identifier_attr
)argument_list
)call
)assignment
)expression_statement
(if_statement
(identifier_attr_type) identifier_attr_type
(block
(expression_statement
(assignment
(subscript
(identifier_attr) identifier_attr
(string_'type') string_'type'
)subscript
(call
(identifier_get_xml_type) identifier_get_xml_type
(argument_list
(identifier_val) identifier_val
)argument_list
)call
)assignment
)expression_statement
)block
)if_statement
(expression_statement
(assignment
(identifier_attrstring) identifier_attrstring
(call
(identifier_make_attrstring) identifier_make_attrstring
(argument_list
(identifier_attr) identifier_attr
)argument_list
)call
)assignment
)expression_statement
(return_statement
(binary_operator
(string_'<%s%s>%s</%s>') string_'<%s%s>%s</%s>'
(tuple
(identifier_key) identifier_key
(identifier_attrstring) identifier_attrstring
(call
(attribute
(call
(identifier_unicode) identifier_unicode
(argument_list
(identifier_val) identifier_val
)argument_list
)call
(identifier_lower) identifier_lower
)attribute
(argument_list
)argument_list
)call
(identifier_key) identifier_key
)tuple
)binary_operator
)return_statement
)block
)function_definition
)module | Converts a boolean into an XML element |
(module
(function_definition
(function_name_n_yearly_publications) function_name_n_yearly_publications
(parameters
(identifier_self) identifier_self
(default_parameter
(identifier_refresh) identifier_refresh
(True) True
)default_parameter
)parameters
(block
(expression_statement
(assignment
(identifier_pub_years) identifier_pub_years
(list_comprehension
(call
(identifier_int) identifier_int
(argument_list
(subscript
(call
(attribute
(attribute
(identifier_ab) identifier_ab
(identifier_coverDate) identifier_coverDate
)attribute
(identifier_split) identifier_split
)attribute
(argument_list
(string_'-') string_'-'
)argument_list
)call
(integer_0) integer_0
)subscript
)argument_list
)call
(for_in_clause
(identifier_ab) identifier_ab
(call
(attribute
(identifier_self) identifier_self
(identifier_get_journal_abstracts) identifier_get_journal_abstracts
)attribute
(argument_list
(keyword_argument
(identifier_refresh) identifier_refresh
(identifier_refresh) identifier_refresh
)keyword_argument
)argument_list
)call
)for_in_clause
)list_comprehension
)assignment
)expression_statement
(return_statement
(call
(identifier_Counter) identifier_Counter
(argument_list
(identifier_pub_years) identifier_pub_years
)argument_list
)call
)return_statement
)block
)function_definition
)module | Number of journal publications in a given year. |
(module
(function_definition
(function_name_lrn) function_name_lrn
(parameters
(identifier_self) identifier_self
(identifier_depth_radius) identifier_depth_radius
(identifier_bias) identifier_bias
(identifier_alpha) identifier_alpha
(identifier_beta) identifier_beta
)parameters
(block
(expression_statement
(assignment
(identifier_name) identifier_name
(binary_operator
(string_"lrn") string_"lrn"
(call
(identifier_str) identifier_str
(argument_list
(subscript
(attribute
(identifier_self) identifier_self
(identifier_counts) identifier_counts
)attribute
(string_"lrn") string_"lrn"
)subscript
)argument_list
)call
)binary_operator
)assignment
)expression_statement
(expression_statement
(augmented_assignment
(subscript
(attribute
(identifier_self) identifier_self
(identifier_counts) identifier_counts
)attribute
(string_"lrn") string_"lrn"
)subscript
(integer_1) integer_1
)augmented_assignment
)expression_statement
(expression_statement
(assignment
(attribute
(identifier_self) identifier_self
(identifier_top_layer) identifier_top_layer
)attribute
(call
(attribute
(attribute
(identifier_tf) identifier_tf
(identifier_nn) identifier_nn
)attribute
(identifier_lrn) identifier_lrn
)attribute
(argument_list
(attribute
(identifier_self) identifier_self
(identifier_top_layer) identifier_top_layer
)attribute
(identifier_depth_radius) identifier_depth_radius
(identifier_bias) identifier_bias
(identifier_alpha) identifier_alpha
(identifier_beta) identifier_beta
(keyword_argument
(identifier_name) identifier_name
(identifier_name) identifier_name
)keyword_argument
)argument_list
)call
)assignment
)expression_statement
(return_statement
(attribute
(identifier_self) identifier_self
(identifier_top_layer) identifier_top_layer
)attribute
)return_statement
)block
)function_definition
)module | Adds a local response normalization layer. |
(module
(function_definition
(function_name_trylock) function_name_trylock
(parameters
(identifier_self) identifier_self
)parameters
(block
(expression_statement
(string_"Try to acquire lock and return True; if cannot acquire the lock at this moment, return False.") string_"Try to acquire lock and return True; if cannot acquire the lock at this moment, return False."
)expression_statement
(if_statement
(attribute
(identifier_self) identifier_self
(identifier_locked) identifier_locked
)attribute
(block
(return_statement
(True) True
)return_statement
)block
)if_statement
(if_statement
(attribute
(identifier_self) identifier_self
(identifier_lockroutine) identifier_lockroutine
)attribute
(block
(return_statement
(False) False
)return_statement
)block
)if_statement
(expression_statement
(assignment
(identifier_waiter) identifier_waiter
(call
(attribute
(attribute
(identifier_self) identifier_self
(identifier_scheduler) identifier_scheduler
)attribute
(identifier_send) identifier_send
)attribute
(argument_list
(call
(identifier_LockEvent) identifier_LockEvent
(argument_list
(attribute
(identifier_self) identifier_self
(identifier_context) identifier_context
)attribute
(attribute
(identifier_self) identifier_self
(identifier_key) identifier_key
)attribute
(identifier_self) identifier_self
)argument_list
)call
)argument_list
)call
)assignment
)expression_statement
(if_statement
(identifier_waiter) identifier_waiter
(block
(return_statement
(False) False
)return_statement
)block
(else_clause
(block
(expression_statement
(assignment
(attribute
(identifier_self) identifier_self
(identifier_locked) identifier_locked
)attribute
(True) True
)assignment
)expression_statement
(return_statement
(True) True
)return_statement
)block
)else_clause
)if_statement
)block
)function_definition
)module | Try to acquire lock and return True; if cannot acquire the lock at this moment, return False. |
(module
(function_definition
(function_name_update_value) function_name_update_value
(parameters
(identifier_self) identifier_self
(identifier_block_id) identifier_block_id
(identifier_field) identifier_field
(identifier_value) identifier_value
)parameters
(block
(expression_statement
(assignment
(identifier_block_name) identifier_block_name
(call
(attribute
(attribute
(identifier_self) identifier_self
(identifier__db) identifier__db
)attribute
(identifier_get_block) identifier_get_block
)attribute
(argument_list
(identifier_block_id) identifier_block_id
)argument_list
)call
)assignment
)expression_statement
(for_statement
(identifier_name) identifier_name
(identifier_block_name) identifier_block_name
(block
(expression_statement
(call
(attribute
(attribute
(identifier_self) identifier_self
(identifier__db) identifier__db
)attribute
(identifier_set_value) identifier_set_value
)attribute
(argument_list
(identifier_name) identifier_name
(identifier_field) identifier_field
(identifier_value) identifier_value
)argument_list
)call
)expression_statement
)block
)for_statement
)block
)function_definition
)module | Update the value of the given block id and field |
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