ascl_id stringclasses 752
values | repo_url stringclasses 737
values | file_path stringlengths 4 194 | content large_stringlengths 1 1M | language stringclasses 29
values | license_type stringclasses 24
values | size int64 1 1M |
|---|---|---|---|---|---|---|
[ascl:1710.013] | https://github.com/pkestene/ramsesGPU | src/qtGui/qtHelloWorld/window.h | /**
* \file window.h
* \brief QT helloworld application, main window.
*
*/
/****************************************************************************
**
** Copyright (C) 2009 Nokia Corporation and/or its subsidiary(-ies).
** Contact: Nokia Corporation (qt-info@nokia.com)
**
** This file is part of the examples o... | C/C++ Header | null | 2,437 |
[ascl:1710.013] | https://github.com/pkestene/ramsesGPU | src/qtGui/qtHelloWorld/glwidget.cpp | /**
* \file glwidget.cpp
* \brief Defines a very simple example of use of QT class QGLWidget.
*/
/****************************************************************************
**
** Copyright (C) 2009 Nokia Corporation and/or its subsidiary(-ies).
** Contact: Nokia Corporation (qt-info@nokia.com)
**
** This file is p... | C++ | null | 6,796 |
[ascl:1710.013] | https://github.com/pkestene/ramsesGPU | src/utils/CMakeLists.txt | add_subdirectory(cnpy)
add_subdirectory(config)
add_subdirectory(monitoring)
if (USE_MPI)
add_subdirectory(mpiUtils)
#add_subdirectory(IO)
endif(USE_MPI)
| Text | null | 158 |
[ascl:1710.013] | https://github.com/pkestene/ramsesGPU | src/utils/config/readme.txt | This directory provides an alternative configuration file parser to GetPot.
There are several possibilities. We chose to use one of the simplest one : inih.
See http://code.google.com/p/inih/ for more information about INI file parser inih.
| Text | null | 243 |
[ascl:1710.013] | https://github.com/pkestene/ramsesGPU | src/utils/config/CMakeLists.txt | add_library(config "")
target_sources(config
PRIVATE
${CMAKE_CURRENT_SOURCE_DIR}/ConfigMap.cpp
${CMAKE_CURRENT_SOURCE_DIR}/inih/ini.cpp
${CMAKE_CURRENT_SOURCE_DIR}/inih/INIReader.cpp
)
target_include_directories(config
PUBLIC
${CMAKE_SOURCE_DIR}/src
${CMAKE_SOURCE_DIR}/src/utils
${CMAKE_CURRENT_SOUR... | Text | null | 526 |
[ascl:1710.013] | https://github.com/pkestene/ramsesGPU | src/utils/config/ConfigMap.h | /**
* \file ConfigMap.h
* \brief Define an object will allow to easily retrieve parameter from a dictionary.
*
* \date 12 November 2010
* \author Pierre Kestener.
*
* $Id: ConfigMap.h 1783 2012-02-21 10:20:07Z pkestene $
*/
#ifndef CONFIG_MAP_H_
#define CONFIG_MAP_H_
#include "inih/INIReader.h"
/**
* \class ... | C/C++ Header | null | 1,385 |
[ascl:1710.013] | https://github.com/pkestene/ramsesGPU | src/utils/config/ConfigMapTest.cpp | /**
* \file ConfigMapTest.cpp
* \brief This is an example use of class ConfigMap.
*
* \date 15 Nov 2010
* \author Pierre Kestener
*
* $Id: ConfigMapTest.cpp 1783 2012-02-21 10:20:07Z pkestene $
*/
#include <iostream>
#include <fstream>
#include "ConfigMap.h"
int main(int argc, char* argv[])
{
// make test.i... | C++ | null | 2,542 |
[ascl:1710.013] | https://github.com/pkestene/ramsesGPU | src/utils/config/ConfigMap.cpp | /**
* \file ConfigMap.cpp
* \brief Implement ConfigMap, essentially a INIReader with additional get methods.
*
* \date 12 November 2010
* \author Pierre Kestener.
*
* $Id: ConfigMap.cpp 1783 2012-02-21 10:20:07Z pkestene $
*/
#include "ConfigMap.h"
#include <cstdlib> // for strtof
#include <sstream>
#include <f... | C++ | null | 4,220 |
[ascl:1710.013] | https://github.com/pkestene/ramsesGPU | src/utils/config/inih/README.txt |
inih is a simple .INI file parser written in C, released under the New BSD
license (see LICENSE.txt). Go to the project home page for more info:
http://code.google.com/p/inih/
| Text | null | 178 |
[ascl:1710.013] | https://github.com/pkestene/ramsesGPU | src/utils/config/inih/ini.h | /* inih -- simple .INI file parser
inih is released under the New BSD license (see LICENSE.txt). Go to the project
home page for more info:
http://code.google.com/p/inih/
*/
#ifndef __INI_H__
#define __INI_H__
/* Make this header file easier to include in C++ code */
#ifdef __cplusplus
extern "C" {
#endif
/* ... | C/C++ Header | null | 1,685 |
[ascl:1710.013] | https://github.com/pkestene/ramsesGPU | src/utils/config/inih/INIReaderTest.cpp | // Example that shows simple usage of the INIReader class
#include <iostream>
#include <fstream>
#include "INIReader.h"
int main(int argc, char* argv[])
{
// make test.ini file
std::fstream iniFile;
iniFile.open ("./test.ini", std::ios_base::out);
iniFile << "; Test config file for ini_test.c" << std::endl;
... | C++ | null | 1,430 |
[ascl:1710.013] | https://github.com/pkestene/ramsesGPU | src/utils/config/inih/INIReader.h | /**
* \file INIReader.h
* \brief Original INI file parser from inih slightly modified.
*
* This has been modified to add a virtual destructor, make Get and
* GetInteger virtual, and format comments to Doxygen syntax.
*/
// Read an INI file into easy-to-access name/value pairs.
// inih and INIReader are releas... | C/C++ Header | null | 2,282 |
[ascl:1710.013] | https://github.com/pkestene/ramsesGPU | src/utils/config/inih/LICENSE.txt |
The "inih" library is distributed under the New BSD license:
Copyright (c) 2009, Brush Technology
All rights reserved.
Redistribution and use in source and binary forms, with or without
modification, are permitted provided that the following conditions are met:
* Redistributions of source code must retain the ab... | Text | null | 1,542 |
[ascl:1710.013] | https://github.com/pkestene/ramsesGPU | src/utils/config/inih/INIReader.cpp | /**
* \file INIReader.cpp
* \brief Implementation of class INIReader.
*
* Read an INI file into easy-to-access name/value pairs.
*/
#include <cctype>
#include <cstdlib>
#include <iostream>
#include <sstream>
#include "ini.h"
#include "INIReader.h"
// =======================================================
// ===... | C++ | null | 3,573 |
[ascl:1710.013] | https://github.com/pkestene/ramsesGPU | src/utils/config/inih/ini.cpp | /* inih -- simple .INI file parser
inih is released under the New BSD license (see LICENSE.txt). Go to the project
home page for more info:
http://code.google.com/p/inih/
*/
#include <stdio.h>
#include <ctype.h>
#include <string.h>
#include <sstream>
#include <iostream>
#include <string>
#include <cctype> // for s... | C++ | null | 6,602 |
[ascl:1710.013] | https://github.com/pkestene/ramsesGPU | src/utils/monitoring/PapiInfo.h | /**
* \file PapiInfo.h
* \brief A simple PAPI interface class.
*
* Parts of this class is adapted from file sc_flops.c found in library
* libsc (https://github.com/cburstedde/libsc)
*
* \author Pierre Kestener
* \date March 3rd, 2014
*
* $Id$
*/
#ifndef PAPI_INFO_H_
#define PAPI_INFO_H_
#include "Timer.h"
... | C/C++ Header | null | 1,274 |
[ascl:1710.013] | https://github.com/pkestene/ramsesGPU | src/utils/monitoring/CMakeLists.txt | add_library(monitoringCpu "")
target_sources (monitoringCpu
PRIVATE
${CMAKE_CURRENT_SOURCE_DIR}/Timer.cpp
)
if (RAMSESGPU_PAPI_FOUND)
target_sources (monitoringCpu
PRIVATE
${CMAKE_CURRENT_SOURCE_DIR}/PapiInfo.h
${CMAKE_CURRENT_SOURCE_DIR}/PapiInfo.cpp
)
target_link_libraries(monitoringCpu
... | Text | null | 620 |
[ascl:1710.013] | https://github.com/pkestene/ramsesGPU | src/utils/monitoring/Timer.cpp | /**
* \file Timer.cpp
* \brief a simpe Timer class implementation.
*
* \author Pierre Kestener
* \date 29 Oct 2010
*
* $Id: Timer.cpp 1783 2012-02-21 10:20:07Z pkestene $
*/
#include "Timer.h"
#include <stdexcept>
namespace hydroSimu {
/////////////////////////////////////////////////////////////////////... | C++ | null | 2,554 |
[ascl:1710.013] | https://github.com/pkestene/ramsesGPU | src/utils/monitoring/PapiInfo.cpp | /**
* \file PapiInfo.cpp
* \brief A simple PAPI interface class.
*
* Parts of this class is inspired by file sc_flops.c found in library
* libsc (https://github.com/cburstedde/libsc).
*
* \author Pierre Kestener
* \date March 3rd, 2014
*
* $Id$
*/
#include "PapiInfo.h"
#include <sys/time.h> // for gettimeof... | C++ | null | 2,947 |
[ascl:1710.013] | https://github.com/pkestene/ramsesGPU | src/utils/monitoring/measure_time.h | /**
* \file measure_time.h
* \brief Simple timing macros.
*
* \author Pierre Kestener
* \date 31 Oct 2010
*
* $Id: measure_time.h 1783 2012-02-21 10:20:07Z pkestene $
*/
#ifndef MEASURE_TIME_H_
#define MEASURE_TIME_H_
#ifdef DO_TIMING
#define MEASURE_TIME(timer, functionToCall) \
timer##.start(); \
f... | C/C++ Header | null | 612 |
[ascl:1710.013] | https://github.com/pkestene/ramsesGPU | src/utils/monitoring/PapiInfoTest.cpp | /**
* \file PapiTest.cpp
* \brief This is an example use of class PapiInfo.
*
* \date March 4, 2014
* \author Pierre Kestener
*
* $Id$
*/
#include "PapiInfo.h"
#include <fstream>
#include <iostream>
namespace hydroSimu {
class PapiInfoTest {
public:
PapiInfoTest(){};
~PapiInfoTest(){};
Timer aTimer;
... | C++ | null | 861 |
[ascl:1710.013] | https://github.com/pkestene/ramsesGPU | src/utils/monitoring/Timer.h | /**
* \file Timer.h
* \brief A simple timer class.
*
* \author Pierre Kestener
* \date 29 Oct 2010
*
* $Id: Timer.h 1783 2012-02-21 10:20:07Z pkestene $
*/
#ifndef MONITORING_TIMER_H_
#define MONITORING_TIMER_H_
#include <time.h>
#include <sys/time.h> // for gettimeofday and struct timeval
typedef struct time... | C/C++ Header | null | 1,066 |
[ascl:1710.013] | https://github.com/pkestene/ramsesGPU | src/utils/monitoring/CudaTimer.h | /**
* \file CudaTimer.h
* \brief A simple timer class for CUDA based on events.
*
* \author Pierre Kestener
* \date 30 Oct 2010
*
* $Id: CudaTimer.h 1783 2012-02-21 10:20:07Z pkestene $
*/
#ifndef CUDA_TIMER_H_
#define CUDA_TIMER_H_
namespace hydroSimu {
/**
* \brief a simple timer for CUDA kernel.
*/... | C/C++ Header | null | 1,209 |
[ascl:1710.013] | https://github.com/pkestene/ramsesGPU | src/utils/monitoring/date.h | /**
* \file date.h
* \brief A simple macro to return a formatted string with date.
*
* \author Pierre Kestener
* \date 31 Oct 2010
*
* $Id: date.h 1783 2012-02-21 10:20:07Z pkestene $
*/
#ifndef MONITORING_DATE_H_
#define MONITORING_DATE_H_
#include <string> // for std::string
#include <time.h> // for time_t, ... | C/C++ Header | null | 711 |
[ascl:1710.013] | https://github.com/pkestene/ramsesGPU | src/utils/mpiUtils/MpiCommCart.h | /**
* \file MpiCommCart.h
* \brief A simple derive class of MpiComm to handle cartesian
* topology.
*
* \date 5 Oct 2010
* \author Pierre Kestener
*
* $Id: MpiCommCart.h 1783 2012-02-21 10:20:07Z pkestene $
*/
#ifndef MPI_COMM_CART_H_
#define MPI_COMM_CART_H_
#include "MpiComm.h"
#include "mpiEnums.h"
names... | C/C++ Header | null | 4,397 |
[ascl:1710.013] | https://github.com/pkestene/ramsesGPU | src/utils/mpiUtils/CMakeLists.txt | add_library(mpiUtils "")
target_sources (mpiUtils
PRIVATE
${CMAKE_CURRENT_SOURCE_DIR}/GlobalMpiSession.cpp
${CMAKE_CURRENT_SOURCE_DIR}/TestForException.h
${CMAKE_CURRENT_SOURCE_DIR}/ErrorPolling.cpp
${CMAKE_CURRENT_SOURCE_DIR}/ErrorPolling.h
${CMAKE_CURRENT_SOURCE_DIR}/common_config.h
${CMAKE_CURRENT_SOU... | Text | null | 945 |
[ascl:1710.013] | https://github.com/pkestene/ramsesGPU | src/utils/mpiUtils/GlobalMpiSession.cpp | /**
* \file GlobalMpiSession.cpp
* \brief Implements class GlobalMpiSession.
* Slightly adapted from the Trilinos package named Teuchos :
* http://trilinos.sandia.gov/packages/teuchos/
*
* - change namespace into hydroSimu
* - remove macro HAVE_MPI since this file will only be compiled if
* MPI wanted
*
* \... | C++ | null | 7,283 |
[ascl:1710.013] | https://github.com/pkestene/ramsesGPU | src/utils/mpiUtils/ErrorPolling.h | /**
* \file ErrorPolling.h
* \brief Utility code for synchronizing std::exception detection across processors.
*
* Adapted from Teuchos package (Trilinos).
* \date 5 Oct 2010
*
* $Id: ErrorPolling.h 1783 2012-02-21 10:20:07Z pkestene $
*/
// ********************************************************************... | C/C++ Header | null | 4,627 |
[ascl:1710.013] | https://github.com/pkestene/ramsesGPU | src/utils/mpiUtils/GlobalMpiSession.h | /**
* \file GlobalMpiSession.h
* \brief A MPI utilities class, providing methods for initializing,
* finalizing, and querying the global MPI session
*
* This is slightly adapted from the Trilinos package named Teuchos :
* http://trilinos.sandia.gov/packages/teuchos/
*
* List of changes:
* - clean TEUCH... | C/C++ Header | null | 4,414 |
[ascl:1710.013] | https://github.com/pkestene/ramsesGPU | src/utils/mpiUtils/TestForException.h | /**
* \file TestForException.h
* \brief Macro for throwing an exception with breakpointing to ease debugging.
*
* This file is from the Trilinos package named Teuchos :
* http://trilinos.sandia.gov/packages/teuchos/
*
* \date 1 Oct 2010
*
* $Id: TestForException.h 1783 2012-02-21 10:20:07Z pkestene $
*/
// **... | C/C++ Header | null | 8,861 |
[ascl:1710.013] | https://github.com/pkestene/ramsesGPU | src/utils/mpiUtils/MpiComm.cpp | /**
* \file MpiComm.cpp
* \brief Implements class MpiComm
*
* Adapted from Teuchos package (Trilinos)
* See : http://trilinos.sandia.gov/packages/teuchos/
*
* Major modification : add virtual topology (cartesian)
*
* \date 5 Oct 2010
* \author Pierre Kestener
*
* $Id: MpiComm.cpp 1859 2012-03-20 17:12:12Z ... | C++ | null | 15,375 |
[ascl:1710.013] | https://github.com/pkestene/ramsesGPU | src/utils/mpiUtils/ErrorPolling.cpp | /**
* \file ErrorPolling.cpp
* \brief Implements class ErrorPolling
*
* $Id: ErrorPolling.cpp 1783 2012-02-21 10:20:07Z pkestene $
*/
// ***********************************************************************
//
// Teuchos: Common Tools Package
// Copyright (2004) Sandia Corpora... | C++ | null | 2,120 |
[ascl:1710.013] | https://github.com/pkestene/ramsesGPU | src/utils/mpiUtils/MpiComm.h | /**
* \file MpiComm.h
* \brief Object representation of a MPI communicator
*
* Adapted from file Teuchos_MPIComm.hpp in package Teuchos inside
* Trilinos.
* See : http://trilinos.sandia.gov/packages/teuchos/
*
* Major modification : add some missing point-to-point communication routines
* and MPI_Sendrecv wrap... | C/C++ Header | null | 6,948 |
[ascl:1710.013] | https://github.com/pkestene/ramsesGPU | src/utils/mpiUtils/mpiEnums.h | #ifndef MPI_ENUMS_H_
#define MPI_ENUMS_H_
namespace hydroSimu {
//! defgroup mpi_cartesian
//!@{
//! number of dimensions of the cartesian virtual topology
enum {
NDIM_2D = 2,
NDIM_3D = 3
};
//! do we allow processor reordering by the MPI cartesian communicator ?
enum {
MPI_REORDER_FALSE = ... | C/C++ Header | null | 1,112 |
[ascl:1710.013] | https://github.com/pkestene/ramsesGPU | src/utils/mpiUtils/common_config.h | /**
* \file common_config.h
* \brief Gather here all relevant C++ header includes.
*
* $Id: common_config.h 1783 2012-02-21 10:20:07Z pkestene $
*/
#ifndef COMMON_CONFIG_H_
#define COMMON_CONFIG_H_
#include <cstdio>
#include <cstdarg>
#include <cerrno>
#include <climits>
#include <cstdlib>
#include <string>
#incl... | C/C++ Header | null | 692 |
[ascl:1710.013] | https://github.com/pkestene/ramsesGPU | src/utils/mpiUtils/MpiCommCart.cpp | /**
* \file MpiCommCart.cpp
* \brief Implements class MpiCommCart
*
* \date 5 Oct 2010
* \author Pierre Kestener
*
* $Id: MpiCommCart.cpp 1783 2012-02-21 10:20:07Z pkestene $
*/
#include "MpiCommCart.h"
namespace hydroSimu {
// =======================================================
// ==================... | C++ | null | 1,889 |
[ascl:1710.013] | https://github.com/pkestene/ramsesGPU | src/utils/cnpy/CMakeLists.txt | add_library(cnpy "")
target_sources(cnpy
PRIVATE
${CMAKE_CURRENT_SOURCE_DIR}/cnpy.cpp
${CMAKE_CURRENT_SOURCE_DIR}/zlib/crc32.c)
target_include_directories(cnpy
PUBLIC
${CMAKE_SOURCE_DIR}
${CMAKE_SOURCE_DIR}/src/utils )
set_target_properties(cnpy PROPERTIES LINKER_LANGUAGE CXX)
add_library(RamsesGPU::cnp... | Text | null | 460 |
[ascl:1710.013] | https://github.com/pkestene/ramsesGPU | src/utils/cnpy/cnpy.h | //Copyright (C) 2011 Carl Rogers
//Released under MIT License
//license available in LICENSE file, or at http://www.opensource.org/licenses/mit-license.php
#ifndef LIBCNPY_H_
#define LIBCNPY_H_
#include<string>
#include<stdexcept>
#include<sstream>
#include<vector>
#include<cstdio>
#include<typeinfo>
#include<iostrea... | C/C++ Header | null | 9,188 |
[ascl:1710.013] | https://github.com/pkestene/ramsesGPU | src/utils/cnpy/cnpy.cpp | //Copyright (C) 2011 Carl Rogers
//Released under MIT License
//license available in LICENSE file, or at http://www.opensource.org/licenses/mit-license.php
#include"cnpy.h"
#include<complex>
#include<cstdlib>
#include<algorithm>
#include<cstring>
#include<iomanip>
char cnpy::BigEndianTest() {
unsigned char x[] = {1... | C++ | null | 7,662 |
[ascl:1710.013] | https://github.com/pkestene/ramsesGPU | src/utils/cnpy/cnpy_example.cpp | /* g++ -o example example.cpp cnpy.cpp -lz */
#include"cnpy.h"
#include<complex>
#include<cstdlib>
#include<iostream>
#include<map>
#include<string>
const unsigned int Nx = 128;
const unsigned int Ny = 64;
const unsigned int Nz = 32;
int main()
{
//create random data
std::complex<double>* data = new std::com... | C++ | null | 2,300 |
[ascl:1710.013] | https://github.com/pkestene/ramsesGPU | src/utils/cnpy/zlib/crc32.c | /* crc32.c -- compute the CRC-32 of a data stream
* Copyright (C) 1995-2006, 2010, 2011, 2012 Mark Adler
* For conditions of distribution and use, see copyright notice in zlib.h
*
* Thanks to Rodney Brown <rbrown64@csc.com.au> for his contribution of faster
* CRC methods: exclusive-oring 32 bits of data at a time,... | C | null | 13,179 |
[ascl:1710.013] | https://github.com/pkestene/ramsesGPU | src/utils/cnpy/zlib/zutil_cnpy.h | /* zutil.h -- internal interface and configuration of the compression library
* Copyright (C) 1995-2013 Jean-loup Gailly.
* For conditions of distribution and use, see copyright notice in zlib.h
*/
/* WARNING: this file should *not* be used by applications. It is
part of the implementation of the compression lib... | C/C++ Header | null | 6,771 |
[ascl:1710.013] | https://github.com/pkestene/ramsesGPU | src/utils/cnpy/zlib/zconf_cnpy.h | /* zconf.h -- configuration of the zlib compression library
* Copyright (C) 1995-2013 Jean-loup Gailly.
* For conditions of distribution and use, see copyright notice in zlib.h
*/
/* @(#) $Id$ */
#ifndef ZCONF_H
#define ZCONF_H
/*
* If you *really* need a unique prefix for all types and library functions,
* com... | C/C++ Header | null | 15,907 |
[ascl:1710.013] | https://github.com/pkestene/ramsesGPU | src/utils/cnpy/zlib/crc32.h | /* crc32.h -- tables for rapid CRC calculation
* Generated automatically by crc32.c
*/
local const z_crc_t FAR crc_table[TBLS][256] =
{
{
0x00000000UL, 0x77073096UL, 0xee0e612cUL, 0x990951baUL, 0x076dc419UL,
0x706af48fUL, 0xe963a535UL, 0x9e6495a3UL, 0x0edb8832UL, 0x79dcb8a4UL,
0xe0d5e91eUL, 0x97d2d988U... | C/C++ Header | null | 30,562 |
[ascl:1710.013] | https://github.com/pkestene/ramsesGPU | src/utils/cnpy/zlib/zlib_cnpy.h | /* zlib.h -- interface of the 'zlib' general purpose compression library
version 1.2.8, April 28th, 2013
Copyright (C) 1995-2013 Jean-loup Gailly and Mark Adler
This software is provided 'as-is', without any express or implied
warranty. In no event will the authors be held liable for any damages
arising fr... | C/C++ Header | null | 87,888 |
[ascl:1710.013] | https://github.com/pkestene/ramsesGPU | src/utils/IO/ioConvert.cpp | /**
* \file ioConvert.cpp
* \brief
* MPI app to convert large 3D netcdf file into HDF5 file using MPI collective IO.
*
* example of use:
* mpirun -np 4 ioConvert -i test.nc -o test.h5
*
* \date 28 Feb 2013
* \author P. Kestener
*
* $Id: ioConvert.cpp 3529 2014-08-29 16:34:41Z pkestene $
*/
#include <cstd... | C++ | null | 35,912 |
[ascl:1710.013] | https://github.com/pkestene/ramsesGPU | src/python/fft/fft_bench.py | """
Mini benchmark for scipy FFT and anfft FFT
anfft (FFTW wrapper) - http://code.google.com/p/anfft/
Example install steps:
1. set env variable PYTHONUSERBASE
2. unpack anfft-0.2.tar.gz
3. run 'python setup.py install --user' to install package in PYTHONUSERBASE
"""
from scipy.fftpack import... | Python | null | 1,411 |
[ascl:1710.013] | https://github.com/pkestene/ramsesGPU | src/python/utils/read_vti.py | '''
A simple example showing how to read a .vti file (vtkImageData)
a convert it to a numpy array.
'''
import numpy as np
import matplotlib.pyplot as plt
import vtk
from vtk.util import numpy_support
#
# filename is a VTI file
#
def vti_to_numpy(filename, fieldName='density'):
reader = vtk.vtkXMLImageDataR... | Python | null | 1,595 |
[ascl:1710.013] | https://github.com/pkestene/ramsesGPU | src/python/utils/convert_netcdf2vtr.py | #!/usr/bin/env python
"""
Convert Netcdf file to python.
"""
# Standard library imports
from __future__ import division
import sys
# numerical packages
import numpy as np
# HDF5 package
import h5py as h5
# NetCDF package
import Scientific.IO.NetCDF as nc
# write numpy array into VTK file
from evtk.hl import grid... | Python | null | 4,712 |
[ascl:1710.013] | https://github.com/pkestene/ramsesGPU | src/python/utils/h5extract.py | """
Extract dataset from a HDF55, and write results in another HDF5 file
"""
from __future__ import print_function
import sys
import numpy
import h5py
def extract(inputFilename, datasetName, outputFilename):
print("Trying to extract dataset %s from file %s" % (datasetName,inputFilename) )
iFile=h5py.File(... | Python | null | 1,184 |
[ascl:1710.013] | https://github.com/pkestene/ramsesGPU | src/python/visu/visu_plane.py | #!/usr/bin/env python
"""Visualize hdf5 data from a RAMSES-GPU run.
"""
# Standard library imports
import numpy as np
import h5py
import sys
# Enthought library imports
from mayavi.scripts import mayavi2
from mayavi.sources.array_source import ArraySource
from mayavi.modules.outline import Outline
from mayavi.mod... | Python | null | 1,834 |
[ascl:1710.013] | https://github.com/pkestene/ramsesGPU | src/python/visu/VtkRayCast.py | #!/usr/bin/env python
##
# \file VtkRayCast.py
# \brief This is a simple volume rendering example that uses a
# vtkVolumeRayCast mapper
#
# Modified by P. Kestener :
# - handle vtkImageData type
# - custom colorTransfertFunction
#
import sys
import vtk
from vtk.util.misc import vtkGetDataRoot
VTK_DATA_ROOT = vtkGe... | Python | null | 4,266 |
[ascl:1710.013] | https://github.com/pkestene/ramsesGPU | src/python/visu/offscreen_render.py | #!/usr/bin/env python
"""A simple to do offscreen rendering
or the Mayavi Envisage application and do off screen rendering.
It can be run as::
$ python offscreen_render.py
"""
# Author: Prabhu Ramachandran <prabhu@aero.iitb.ac.in>
# Copyright (c) 2007, Enthought, Inc.
# License: BSD Style.
##
# \file offscreen... | Python | null | 2,389 |
[ascl:1710.013] | https://github.com/pkestene/ramsesGPU | src/python/visu/Mayavi2RayCast.py | #!/usr/bin/env python
"""This is a simple Mayavi2 script to do volume rendering using Mayavi2.
"""
##
# \file Mayavi2RayCast.py
# \brief This is a simple Mayavi2 script to do volume rendering using Mayavi2.
# \author P. Kestener
# Standard library imports
from os.path import join, abspath, dirname
import sys
# Mayav... | Python | null | 1,064 |
[ascl:1710.013] | https://github.com/pkestene/ramsesGPU | src/python/powerSpectrum/setup.py | from distutils.core import setup
from distutils.extension import Extension
from Cython.Distutils import build_ext
setup(
cmdclass = {'build_ext': build_ext},
ext_modules = [Extension("powerSpectrum2", ["powerSpectrum2.pyx"], libraries=["m"])]
)
# build:
# python setup.py build_ext --inplace
| Python | null | 304 |
[ascl:1710.013] | https://github.com/pkestene/ramsesGPU | src/python/powerSpectrum/powerSpectrum_bench.py | """
Mini benchmark for powerSpectrum (pure python versus cython)
"""
import sys
from powerSpectrum import powSpectrum as powSpectrum_py
from powerSpectrum2 import powSpectrum as powSpectrum_cy
def bench_powerSpectrum_py(data,Nbins):
freq, pow_data = powSpectrum_py(data,Nbins)
print pow_data
def bench_po... | Python | null | 1,661 |
[ascl:1710.013] | https://github.com/pkestene/ramsesGPU | src/python/powerSpectrum/powerSpectrum.py | #!/usr/bin/env python
""" Compute power spectrum
"""
# Standard library imports
import sys
import numpy as np
# HDF5 package
import h5py
#
# ###################################################
#
def read_ramses_gpu_data(fileName,fieldName='density'):
"""Read hdf5 data from RAMSES-GPU simulation run using h5py m... | Python | null | 4,386 |
[ascl:1710.013] | https://github.com/pkestene/ramsesGPU | src/python/powerSpectrum/plot_powerSpectrum.py | """
Plot power spectrum.
"""
import sys
import numpy as np
import h5py
from powerSpectrum2 import powSpectrum
from powerSpectrum2 import read_ramses_gpu_data
from powerSpectrum2 import squareModulusFourier
#
# MAIN
#
if __name__ == '__main__':
from timeit import Timer
Nbins=64
# default dat... | Python | null | 965 |
[ascl:1710.013] | https://github.com/pkestene/ramsesGPU | src/glutGui/GlutWindow.cpp | /**
* \file GlutWindow.cpp
* \brief Implements a base class for handling Glut interface callbacks.
*
* \see http://www.stetten.com/george/glutmaster/glutmaster.html
*
* $Id: GlutWindow.cpp 1784 2012-02-21 10:34:58Z pkestene $
*/
////////////////////////////////////////////////////////////////
// ... | C++ | null | 2,233 |
[ascl:1710.013] | https://github.com/pkestene/ramsesGPU | src/glutGui/GlutMaster.cpp | /**
* \file GlutMaster.cpp
* \brief Implements a class for handling multiple GlutWindows.
*
* \see http://www.stetten.com/george/glutmaster/glutmaster.html
*
* $Id: GlutMaster.cpp 1784 2012-02-21 10:34:58Z pkestene $
*/
////////////////////////////////////////////////////////////////
// ... | C++ | null | 4,487 |
[ascl:1710.013] | https://github.com/pkestene/ramsesGPU | src/glutGui/palettes.h | /**
* \file palettes.h
* \brief Defines lookup tables (palettes) used in the rendering GLut/Qt Gui.
*
* Lookup tables borrowed from Athena. https://trac.princeton.edu/Athena/
* The 7 tables included are :
* - rainbow - red-blue-black.
* - jh_colors - John Hawley's "famous" color table. Red-gray-blue.
* ... | C/C++ Header | null | 73,370 |
[ascl:1710.013] | https://github.com/pkestene/ramsesGPU | src/glutGui/README.txt | see the GlutMaster page http://www.stetten.com/george/glutmaster/glutmaster.html
it is a C++ GLUT Wrapper.
| Text | null | 108 |
[ascl:1710.013] | https://github.com/pkestene/ramsesGPU | src/glutGui/HydroWindow.h | /**
* \file HydroWindow.h
* \brief
* Top level class for displaying a Hydro simulation.
* Inspired by DemoWindow.h
*
* \author P. Kestener
* \date 23/02/2010
*
* $Id: HydroWindow.h 1784 2012-02-21 10:34:58Z pkestene $
*/
#ifndef HYDRO_WINDOW_H_
#define HYDRO_WINDOW_H_
#include "GlutMaster.h"
// applicatio... | C/C++ Header | null | 4,222 |
[ascl:1710.013] | https://github.com/pkestene/ramsesGPU | src/glutGui/DemoWindow.cpp | /**
* \file DemoWindow.cpp
* \brief Original example use of class GlutWindow.
*
* $Id: DemoWindow.cpp 1784 2012-02-21 10:34:58Z pkestene $
*/
////////////////////////////////////////////////////////////////
// //
// demoWindow.c++ ... | C++ | null | 2,436 |
[ascl:1710.013] | https://github.com/pkestene/ramsesGPU | src/glutGui/GlutWindow.h | /**
* \file GlutWindow.h
* \brief Defines a base class for handling Glut interface callbacks.
*
* \see http://www.stetten.com/george/glutmaster/glutmaster.html
*
* $Id: GlutWindow.h 1784 2012-02-21 10:34:58Z pkestene $
*/
////////////////////////////////////////////////////////////////
// ... | C/C++ Header | null | 1,792 |
[ascl:1710.013] | https://github.com/pkestene/ramsesGPU | src/glutGui/HydroWindow.cpp | /**
* \file HydroWindow.cpp
* \brief Implementation of class HydroWindow.
*
* \author P. Kestener
* \date 23/02/2010
*
* $Id: HydroWindow.cpp 1784 2012-02-21 10:34:58Z pkestene $
*/
#include <HydroWindow.h>
#include "palettes.h"
#include "../utils/monitoring/date.h"
// =======================================... | C++ | null | 22,137 |
[ascl:1710.013] | https://github.com/pkestene/ramsesGPU | src/glutGui/README.orig.txt | *************************************************
GlutMaster: An Object Oriented Adaptation of GLUT
*************************************************
by George Stetten and Korin Crawford (email@stetten.com)
(beta version 0.3 - 9/9/97)
GLUT is a library-based GUI for OpenGL that runs on many platforms
(see Open... | Text | null | 2,629 |
[ascl:1710.013] | https://github.com/pkestene/ramsesGPU | src/glutGui/GlutMaster.h | /**
* \file GlutMaster.h
* \brief Defines a class for handling multiple GlutWindows.
*
* \see http://www.stetten.com/george/glutmaster/glutmaster.html
*
* $Id: GlutMaster.h 1784 2012-02-21 10:34:58Z pkestene $
*/
////////////////////////////////////////////////////////////////
// ... | C/C++ Header | null | 2,160 |
[ascl:1710.013] | https://github.com/pkestene/ramsesGPU | src/glutGui/DemoWindow.h | /**
* \file DemoWindow.h
* \brief Original example use of class GlutWindow.
*
* $Id: DemoWindow.h 1784 2012-02-21 10:34:58Z pkestene $
*/
////////////////////////////////////////////////////////////////
// //
// demoWindow.h ... | C/C++ Header | null | 1,441 |
[ascl:1011.007] | https://bitbucket.org/rteyssie/ramses | bitbucket-pipelines.yml | # This is a sample build configuration for Python.
# Check our guides at https://confluence.atlassian.com/x/x4UWN for more examples.
# Only use spaces to indent your .yml configuration.
# -----
# You can specify a custom docker image from Docker Hub as your build environment.
image: cphyc/openmpi-iap
pipelines:
defa... | YAML | null | 542 |
[ascl:1011.007] | https://bitbucket.org/rteyssie/ramses | README.md | # This is the old ramses bitbucket repository.
---
> :warning: **Ramses main repository moved to [Github](https://github.com/ramses-organisation/ramses) ! The new address is <https://github.com/ramses-organisation/ramses>.** :warning:
*Learn more about the change and how to migrate [here](https://ramses.cnrs.fr/rams... | Markdown | null | 757 |
[ascl:1011.007] | https://bitbucket.org/rteyssie/ramses | poisson/phi_fine_cg.f90 | !###########################################################
!###########################################################
!###########################################################
!###########################################################
subroutine phi_fine_cg(ilevel,icount)
use amr_commons
use pm_commons
u... | Fortran | null | 18,778 |
[ascl:1011.007] | https://bitbucket.org/rteyssie/ramses | poisson/output_poisson.f90 | subroutine backup_poisson(filename)
use amr_commons
use poisson_commons
use mpi_mod
implicit none
character(LEN=80)::filename
integer::i,ivar,ncache,ind,ilevel,igrid,iskip,ilun,istart,ibound
integer,allocatable,dimension(:)::ind_grid
real(dp),allocatable,dimension(:)::xdp
character(LEN=5)::nchar
ch... | Fortran | null | 2,685 |
[ascl:1011.007] | https://bitbucket.org/rteyssie/ramses | poisson/init_poisson.f90 | subroutine init_poisson
use pm_commons
use amr_commons
use poisson_commons
use mpi_mod
implicit none
#ifndef WITHOUTMPI
integer :: info,info2,dummy_io
integer,parameter::tag=1114
#endif
integer::ncell,ncache,iskip,igrid,i,ilevel,ind,ivar
integer::ilevel2,numbl2,ilun,ibound,istart
integer::ncpu2,ndim... | Fortran | null | 5,579 |
[ascl:1011.007] | https://bitbucket.org/rteyssie/ramses | poisson/multigrid_coarse.f90 | !###########################################################
!###########################################################
!###########################################################
!###########################################################
subroutine full_multigrid(icount)
use amr_commons
use pm_commons
use p... | Fortran | null | 25,379 |
[ascl:1011.007] | https://bitbucket.org/rteyssie/ramses | poisson/interpol_phi.f90 | subroutine interpol_phi(ind_cell,phi_int,ncell,ilevel,icount)
use amr_commons
use poisson_commons, only:phi,phi_old
implicit none
integer::ncell,ilevel,icount
integer ,dimension(1:nvector)::ind_cell
real(dp),dimension(1:nvector,1:twotondim)::phi_int
!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!... | Fortran | null | 4,144 |
[ascl:1011.007] | https://bitbucket.org/rteyssie/ramses | poisson/rho_ana.f90 | !#########################################################
!#########################################################
!#########################################################
!#########################################################
subroutine rho_ana(x,d,dx,ncell)
use amr_parameters
use hydro_parameters
use p... | Fortran | null | 2,680 |
[ascl:1011.007] | https://bitbucket.org/rteyssie/ramses | poisson/poisson_commons.f90 | module poisson_commons
use amr_commons
use poisson_parameters
real(dp),allocatable,dimension(:) ::phi,phi_old ! Potential
real(dp),allocatable,dimension(:) ::rho ! Density
real(dp),allocatable,dimension(:,:)::f ! 3-force
real(dp),allocatable,dimension(:) ::rho_top ... | Fortran | null | 1,274 |
[ascl:1011.007] | https://bitbucket.org/rteyssie/ramses | poisson/multigrid_fine_coarse.f90 | ! ------------------------------------------------------------------------
! Multigrid Poisson solver for refined AMR levels
! ------------------------------------------------------------------------
! This file contains all MG-coarse-level related routines
!
! Used variables:
! finest(AMR)level ... | Fortran | null | 35,397 |
[ascl:1011.007] | https://bitbucket.org/rteyssie/ramses | poisson/gravana.f90 | !#########################################################
!#########################################################
!#########################################################
!#########################################################
subroutine gravana(x,f,dx,ncell)
use amr_parameters
use poisson_parameters
use... | Fortran | null | 3,903 |
[ascl:1011.007] | https://bitbucket.org/rteyssie/ramses | poisson/boundary_potential.f90 | !################################################################
!################################################################
!################################################################
!################################################################
subroutine make_boundary_force(ilevel)
use amr_commons... | Fortran | null | 11,149 |
[ascl:1011.007] | https://bitbucket.org/rteyssie/ramses | poisson/poisson_parameters.f90 | module poisson_parameters
use amr_parameters
! Convergence criterion for Poisson solvers
real(dp)::epsilon=1.0D-4
! Type of force computation
integer ::gravity_type=0
! Gravity parameters
real(dp),dimension(1:10)::gravity_params=0
! Maximum level for CIC dark matter interpolation
integer :: cic_le... | Fortran | null | 848 |
[ascl:1011.007] | https://bitbucket.org/rteyssie/ramses | poisson/multigrid_fine_fine.f90 | ! ------------------------------------------------------------------------
! Multigrid Poisson solver for refined AMR levels
! ------------------------------------------------------------------------
! This file contains all MG-fine-level related routines
!
! Used variables:
! finest(AMR)level ... | Fortran | null | 26,176 |
[ascl:1011.007] | https://bitbucket.org/rteyssie/ramses | poisson/multigrid_fine_commons.f90 | ! ------------------------------------------------------------------------
! Multigrid Poisson solver for refined AMR levels
! ------------------------------------------------------------------------
! This file contains all generic fine multigrid routines, such as
! * multigrid iterations @ fine and coarse MG levels... | Fortran | null | 55,672 |
[ascl:1011.007] | https://bitbucket.org/rteyssie/ramses | poisson/force_fine.f90 | !#########################################################
!#########################################################
!#########################################################
!#########################################################
subroutine force_fine(ilevel,icount)
use amr_commons
use pm_commons
use poisso... | Fortran | null | 10,064 |
[ascl:1011.007] | https://bitbucket.org/rteyssie/ramses | aton/observe.f90 | module observe_commons
use amr_parameters
integer,parameter::observe_num_quantity=8
real(dp),dimension(1:observe_num_quantity)::observe_quantity=0d0
integer::observe_ilun_quantity=8000
! Star radiation statistics
real(kind=8)::observe_total_star_source=0d0
integer::observe_num_stars=0
end module obser... | Fortran | null | 4,699 |
[ascl:1011.007] | https://bitbucket.org/rteyssie/ramses | aton/rad_boundary.f90 | ! Call once per process.
subroutine init_rad_boundary()
use radiation_commons
use mpi_mod
implicit none
integer::lattice_size
if (rad_boundary_condition.eq.0) then
if (myid.eq.1) then
write(*,*)"Using zero-gradient boundary conditions for radiation."
end if
else if (rad_boundary_condition... | Fortran | null | 5,726 |
[ascl:1011.007] | https://bitbucket.org/rteyssie/ramses | aton/timing.f90 | ! Module for timing passages of code.
!
! Example:
!
! use timing
! implicit none
! timer_state::my_timer
!
! call timer_init(my_timer)
! call timer_start(my_timer)
! ... do stuff ...
! call timer_stop(my_timer)
! call timer_output(<file>, my_timer, "my_timer")
module timing
implicit none
type timer_stat... | Fortran | null | 1,247 |
[ascl:1011.007] | https://bitbucket.org/rteyssie/ramses | aton/rad_init.f90 | subroutine rad_init
use cooling_module
use data_common
use radiation_commons
implicit none
integer::aton_init_gpu
call aton_get_grid_size( &
& grid_size_x, &
& grid_size_y, &
& grid_size_z, &
& boundary_size)
num_cpu_x = 2**levelmin / grid_size_x
num_cpu_y = 2**levelmin / gr... | Fortran | null | 2,815 |
[ascl:1011.007] | https://bitbucket.org/rteyssie/ramses | aton/rad_stars.f90 | ! Adapted from pm/feedback.f90.
subroutine compute_Srad()
use pm_commons
use amr_commons
use hydro_commons
use radiation_commons
use observe_commons
implicit none
integer::ilevel
observe_total_star_source=0d0
observe_num_stars=0
if (.not.pic) then
if (myid.eq.1) then
write(*,*)"Not c... | Fortran | null | 8,509 |
[ascl:1011.007] | https://bitbucket.org/rteyssie/ramses | aton/init_radiation.f90 | subroutine init_radiation
use amr_commons
use hydro_commons
use cooling_module, ONLY: force_j0_one
use radiation_commons, ONLY: Erad,Srad
use mpi_mod
implicit none
integer::ncell,ncache,iskip,igrid,i,ilevel,ind,ivar
integer::nvar2,ilevel2,numbl2,ilun,ibound,istart,info
integer::ncpu2,ndim2,nlevelmax2,... | Fortran | null | 3,958 |
[ascl:1011.007] | https://bitbucket.org/rteyssie/ramses | aton/rad_step.f90 | ! Radiation module for RAMSES.
! It uses the ATON library.
! 2010
! Timothy Stranex <timothy@stranex.com>
! FIXME: Rename data_common to rad_arrays and move to its own file.
module data_common
! Scalar quantities.
! cpu_t: Temperature [Kelvin]
! cpu_d: Gas number density [atoms / m^3]
! cpu_x: Ionization fract... | Fortran | null | 24,825 |
[ascl:1011.007] | https://bitbucket.org/rteyssie/ramses | aton/rad_backup.f90 | subroutine backup_radiation(filename)
use amr_commons
use hydro_commons
use radiation_commons, ONLY: Erad
use mpi_mod
implicit none
character(LEN=80)::filename
integer::i,ivar,ncache,ind,ilevel,igrid,iskip,ilun,istart,ibound,nvar_rad
integer,allocatable,dimension(:)::ind_grid
real(dp),allocatable,dim... | Fortran | null | 4,997 |
[ascl:1011.007] | https://bitbucket.org/rteyssie/ramses | aton/radiation_commons.f90 | module radiation_commons
use amr_commons
use timing
implicit none
! Photon number density on the AMR grid
real(dp),allocatable,dimension(:) ::Erad
! Photon emission source field on the AMR grid
real(dp),allocatable,dimension(:) ::Srad
! Number of cells in each dimension.
integer::grid_size_x,grid... | Fortran | null | 2,829 |
[ascl:1011.007] | https://bitbucket.org/rteyssie/ramses | aton/atonlib/aton_cpp.h | // Public C++ interface for ATON.
// WARNING:
// This interface is not finalized.
// Clearly it needs to be improved a lot.
// Incompatible changes are likely to be made.
// The GPU functions operate on global GPU arrays.
// Therefore, there can only be a single GPU ATON instance per process.
// However, there is als... | C/C++ Header | null | 2,493 |
[ascl:1011.007] | https://bitbucket.org/rteyssie/ramses | aton/atonlib/aton_fortran.h | // Public Fortran interface to ATON.
// The library operates with global arrays on the GPU.
// Therefore, there can only be a single ATON instance per process.
// Also, the GPU grid size is fixed at compile time.
// You need to edit internal/gpu.h to change the size.
//
// ATON always uses 'physical' quantities, never... | C/C++ Header | null | 4,328 |
[ascl:1011.007] | https://bitbucket.org/rteyssie/ramses | aton/atonlib/internal/constants.h |
#ifdef S_100000
#define AVG_EGY 29.6099
#define AVG_CSN 1.63029e-22
#define AVG_CSE 1.09691e-22
#endif
#ifdef S_50000
#define AVG_EGY 20.2762
#define AVG_CSN 2.93055e-22
#define AVG_CSE 2.49363e-22
#endif
| C/C++ Header | null | 211 |
[ascl:1011.007] | https://bitbucket.org/rteyssie/ramses | aton/atonlib/internal/gpu.h | // GPU definitions.
// Unfortunately the grid size is fixed at compile time.
// It is defined by the NCELLX, NCELLY and NCELLZ macros.
// These are always passed on the compiler command line
// so that they can be configured in the Makefile.
// Number of boundary cells.
// This must be at least 1.
// Larger values (e... | C/C++ Header | null | 1,335 |
[ascl:1011.007] | https://bitbucket.org/rteyssie/ramses | aton/utils/test7linecut.py | #!/usr/bin/python
import glob
import math
import os
import sys
def load_info(output_dir):
info = {}
info_path = glob.glob(os.path.join(output_dir, 'info_*'))[0]
for line in file(info_path):
parts = line.strip().split()
if len(parts) == 3 and parts[1] == '=':
info[parts[0]] = pa... | Python | null | 1,730 |
[ascl:1011.007] | https://bitbucket.org/rteyssie/ramses | aton/utils/test5spherical.py | #!/usr/bin/python
"""
Reads the output from amr2cell and outputs the averaged quantities in spherical
shells about the centre of the cube.
"""
import math
import sys
N = 256
bins = [[0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0] for i in range(N)]
middle = 0.5
# Units
# These need to be kept in sync with amr/units.f90!
mH = 1.... | Python | null | 1,556 |
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