pdb_id
string
chain1
string
res_name1
string
res_seq_num1
int64
ins_code1
string
chain2
string
res_name2
string
res_seq_num2
int64
ins_code2
string
min_distance
float64
symmetry_op
string
label_final
string
label_bp
string
label_bs
string
filename
string
pair_type
string
pair_id
string
pdb_key
string
base1_type
string
base2_type
string
geometry_ok_01
float64
base_plane_angle_deg
float64
c1p_c1p_distance_A
float64
stack_interplane_distance_A
float64
stack_overlap_area_A2
float64
stack_parallel_plane_angle_deg
float64
hbond_min_da_dist
float64
hbond_num_da_lt_3p5
float64
hbond_max_angle_for_da_lt_3p5
float64
hbond_num_full
float64
hbond_pattern_present_01
float64
hbond_angle_defined_01
float64
coords_found_01
int64
core_feature_found_01
int64
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identity
basepair
bp
non-bs
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2ZJQ_X_2179_X_2204_C_A
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null
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identity
basestacks
non-bp
bs
2zjq_X_690_X_815_A_A
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2ZJQ_X_690_X_815_A_A
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1
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3j9w
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identity
basestacks
non-bp
bs
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3J9W_AA_924_AA_925_A_A
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identity
basestacks
non-bp
bs
2zjq_X_1412_X_1413_C_U
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2ZJQ_X_1412_X_1413_C_U
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1
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1
1
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identity
basepair
bp
non-bs
2zjq_X_311_X_345_A_U
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2ZJQ_X_311_X_345_A_U
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null
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1yi2
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identity
basepair
bp
non-bs
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identity
basepair
bp
non-bs
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125.088155
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1
1
1
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1yi2
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identity
basepair
bp
non-bs
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null
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1yi2
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identity
basestacks
non-bp
bs
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1zo1
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identity
non-interacting
non-bp
non-bs
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3j9w
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identity
basestacks
non-bp
bs
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identity
non-interacting
non-bp
non-bs
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identity
basestacks
non-bp
bs
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identity
basestacks
non-bp
bs
1yi2_0_2625_0_2626_C_C
CC
1YI2_0_2625_0_2626_C_C
1yi2
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1
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null
0
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1
2zjq
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null
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identity
basepair
bp
non-bs
2zjq_X_1301_X_1340_U_C
CU
2ZJQ_X_1301_X_1340_U_C
2zjq
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1
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1
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1
1
1
2zjq
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identity
basepair
bp
non-bs
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AA
2ZJQ_X_494_X_507_A_A
2zjq
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1
128.888335
1
1
1
1
1
1yi2
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identity
basepair
bp
non-bs
1yi2_0_482_0_486_G_A
AG
1YI2_0_482_0_486_G_A
1yi2
G
A
1
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1
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identity
non-interacting
non-bp
non-bs
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AC
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4z4e
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1
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null
0
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0
1
1
2zjq
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540
null
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null
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identity
basepair
bp
non-bs
2zjq_X_540_X_542_G_A
AG
2ZJQ_X_540_X_542_G_A
2zjq
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0
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5w1h
B
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null
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identity
non-interacting
non-bp
non-bs
5w1h_B_-21_B_-7_C_C
CC
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C
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1
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null
0
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1
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3j9w
BA
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null
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identity
basestacks
non-bp
bs
3j9w_BA_2236_BA_2237_C_C
CC
3J9W_BA_2236_BA_2237_C_C
3j9w
C
C
1
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0
null
0
0
0
1
1
1yi2
0
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0
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1,257
null
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identity
basepair
bp
non-bs
1yi2_0_1106_0_1257_A_C
AC
1YI2_0_1106_0_1257_A_C
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C
1
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null
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1
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BB
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null
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identity
basestacks
non-bp
bs
4v50_BB_1183_BB_1184_U_U
UU
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1
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10.860626
3.472373
1
124.660765
1
1
1
1
1
1yi2
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66
null
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null
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identity
basestacks
non-bp
bs
1yi2_0_66_0_109_G_U
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1
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1
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null
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identity
basestacks
non-bp
bs
4v50_AA_1307_AA_1308_U_U
UU
4V50_AA_1307_AA_1308_U_U
4v50
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0
null
0
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1
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identity
non-interacting
non-bp
non-bs
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6GQB_1_9_1_1560_U_G
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88.230828
22.196671
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null
0
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0
1
1
1yi2
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null
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718
null
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identity
basestacks
non-bp
bs
1yi2_0_711_0_718_G_C
CG
1YI2_0_711_0_718_G_C
1yi2
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1
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81.554467
0
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1
1
1
1yi2
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null
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identity
basepair
bp
non-bs
1yi2_0_2041_0_2726_G_U
GU
1YI2_0_2041_0_2726_G_U
1yi2
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1
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1
129.142501
1
1
1
1
1
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B
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67
null
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identity
non-interacting
non-bp
non-bs
6icz_B_8_B_67_G_A
AG
6ICZ_B_8_B_67_G_A
6icz
G
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1
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null
0
0
0
1
1
2zjq
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987
null
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null
2.8846
identity
basestacks
non-bp
bs
2zjq_X_987_X_988_G_G
GG
2ZJQ_X_987_X_988_G_G
2zjq
G
G
1
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0
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2
124.281802
1
1
1
1
1
2zjq
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219
null
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220
null
3.6251
identity
basepair
bp
non-bs
2zjq_X_219_X_220_G_U
GU
2ZJQ_X_219_X_220_G_U
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0
null
0
0
0
1
1
1yi2
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null
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null
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identity
basepair
bp
non-bs
1yi2_0_1491_0_1492_G_A
AG
1YI2_0_1491_0_1492_G_A
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1
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null
0
0
0
1
1
1yi2
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null
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identity
basepair
bp
non-bs
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AU
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null
0
0
0
1
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1yi2
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null
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identity
basestacks
non-bp
bs
1yi2_0_2494_0_2495_G_U
GU
1YI2_0_2494_0_2495_G_U
1yi2
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1
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3.295858
1
85.219049
0
0
1
1
1
1yi2
0
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1,113
null
0
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1,251
null
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identity
basestacks
non-bp
bs
1yi2_0_1113_0_1251_G_C
CG
1YI2_0_1113_0_1251_G_C
1yi2
G
C
1
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0
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3.395072
2
75.431256
0
0
1
1
1
1yi2
0
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2,857
null
0
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null
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identity
basepair
bp
non-bs
1yi2_0_2857_0_2899_C_A
AC
1YI2_0_2857_0_2899_C_A
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C
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1
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27.405686
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null
0
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0
1
1
2zjq
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null
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null
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identity
non-interacting
non-bp
non-bs
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AA
2ZJQ_X_6_X_2758_A_A
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null
0
0
0
1
1
3j9w
BA
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null
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117
null
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identity
basepair
bp
non-bs
3j9w_BA_51_BA_117_G_A
AG
3J9W_BA_51_BA_117_G_A
3j9w
G
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1
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26.46453
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2
157.177476
2
1
1
1
1
3j9w
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null
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920
null
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identity
basestacks
non-bp
bs
3j9w_AA_919_AA_920_A_C
AC
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null
0
0
0
1
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3j9w
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109
null
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identity
basestacks
non-bp
bs
3j9w_AA_108_AA_109_C_G
CG
3J9W_AA_108_AA_109_C_G
3j9w
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1
109.466784
1
1
1
1
1
3j9w
AA
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BA
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null
3.7841
identity
basepair
bp
non-bs
3j9w_AA_1427_BA_1977_A_G
AG
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3j9w
A
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1
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null
0
0
0
1
1
3j9w
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874
null
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null
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identity
basestacks
non-bp
bs
3j9w_AA_874_AA_875_A_A
AA
3J9W_AA_874_AA_875_A_A
3j9w
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1
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2
88.734685
0
0
1
1
1
3j9w
AA
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null
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90
null
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identity
basepair
bp
non-bs
3j9w_AA_79_AA_90_G_C
CG
3J9W_AA_79_AA_90_G_C
3j9w
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1
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11.993841
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3
123.467858
3
1
1
1
1
4v50
BB
A
941
null
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1,189
null
3.458
identity
basepair
bp
non-bs
4v50_BB_941_BB_1189_A_A
AA
4V50_BB_941_BB_1189_A_A
4v50
A
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1
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6.435717
0
null
0
0
0
1
1
2zjq
X
C
700
null
X
U
800
null
6.7008
identity
basepair
bp
non-bs
2zjq_X_700_X_800_C_U
CU
2ZJQ_X_700_X_800_C_U
2zjq
C
U
1
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0
11.945971
7.133485
0
null
0
0
0
1
1
5no4
A
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140
null
A
U
224
null
3.2374
identity
basepair
bp
non-bs
5no4_A_140_A_224_U_U
UU
5NO4_A_140_A_224_U_U
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null
0
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1
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4lel
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29
null
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identity
non-interacting
non-bp
non-bs
4lel_QA_9_QA_29_G_G
GG
4LEL_QA_9_QA_29_G_G
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1
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null
0
0
0
1
1
4v50
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null
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G
88
null
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identity
basepair
bp
non-bs
4v50_BB_60_BB_88_G_G
GG
4V50_BB_60_BB_88_G_G
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G
G
1
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144.633853
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1
1
1
1
3j9w
AA
C
349
null
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C
350
null
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identity
basestacks
non-bp
bs
3j9w_AA_349_AA_350_C_C
CC
3J9W_AA_349_AA_350_C_C
3j9w
C
C
1
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0
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0
null
0
0
0
1
1
3j9w
AA
U
127
null
AA
A
240
null
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identity
basepair
bp
non-bs
3j9w_AA_127_AA_240_U_A
AU
3J9W_AA_127_AA_240_U_A
3j9w
U
A
1
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0
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2
131.822856
2
1
1
1
1
3j9w
BA
G
368
null
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G
382
null
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identity
basepair
bp
non-bs
3j9w_BA_368_BA_382_G_G
GG
3J9W_BA_368_BA_382_G_G
3j9w
G
G
1
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0
27.111912
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0
null
0
0
0
1
1
3j9w
AA
C
42
null
AA
G
410
null
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identity
basepair
bp
non-bs
3j9w_AA_42_AA_410_C_G
CG
3J9W_AA_42_AA_410_C_G
3j9w
C
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1
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4
1
1
1
1
3j9w
AA
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274
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null
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identity
basestacks
non-bp
bs
3j9w_AA_274_AA_276_G_U
GU
3J9W_AA_274_AA_276_G_U
3j9w
G
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1
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null
0
0
0
1
1
1yi2
0
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null
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identity
basepair
bp
non-bs
1yi2_0_1405_0_1717_U_A
AU
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U
A
1
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1
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1
1
1
1
1
1yi2
0
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1,044
null
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null
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identity
basestacks
non-bp
bs
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AC
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AA
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identity
basestacks
non-bp
bs
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GU
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G
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1
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1
1
1
1
1
1yi2
0
C
228
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229
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identity
basestacks
non-bp
bs
1yi2_0_228_0_229_C_G
CG
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C
G
1
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null
0
0
0
1
1
3j9w
AA
G
458
null
AA
A
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null
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identity
basestacks
non-bp
bs
3j9w_AA_458_AA_459_G_A
AG
3J9W_AA_458_AA_459_G_A
3j9w
G
A
1
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1
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0
1
1
1
3j9w
AA
G
905
null
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915
null
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identity
basestacks
non-bp
bs
3j9w_AA_905_AA_915_G_U
GU
3J9W_AA_905_AA_915_G_U
3j9w
G
U
1
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null
0
0
0
1
1
1yi2
0
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0
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null
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identity
basestacks
non-bp
bs
1yi2_0_1656_0_1657_A_A
AA
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1yi2
A
A
1
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0
null
0
0
0
1
1
2zjq
X
A
1,139
null
X
G
2,495
null
3.4124
identity
basepair
bp
non-bs
2zjq_X_1139_X_2495_A_G
AG
2ZJQ_X_1139_X_2495_A_G
2zjq
A
G
1
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0
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1
116.117227
1
1
1
1
1
1zo1
F
U
7
null
F
A
44
null
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identity
non-interacting
non-bp
non-bs
1zo1_F_7_F_44_U_A
AU
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1zo1
U
A
1
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0
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24.988759
0
null
0
0
0
1
1
1yi2
0
U
2,688
null
0
C
2,707
null
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identity
basestacks
non-bp
bs
1yi2_0_2688_0_2707_U_C
CU
1YI2_0_2688_0_2707_U_C
1yi2
U
C
1
8.648032
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0
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3.88879
0
null
0
0
0
1
1
2zjq
X
G
2,437
null
X
G
2,473
null
2.6114
identity
basepair
bp
non-bs
2zjq_X_2437_X_2473_G_G
GG
2ZJQ_X_2437_X_2473_G_G
2zjq
G
G
1
18.302925
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2.807778
0
18.302925
2.611364
1
106.00913
1
1
1
1
1
5zw4
D
C
27
null
D
G
30
null
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identity
non-interacting
non-bp
non-bs
5zw4_D_27_D_30_C_G
CG
5ZW4_D_27_D_30_C_G
5zw4
C
G
1
36.022538
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8.712667
0
36.022538
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0
null
0
0
0
1
1
1yi2
0
A
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null
0
U
1,599
null
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identity
basestacks
non-bp
bs
1yi2_0_1598_0_1599_A_U
AU
1YI2_0_1598_0_1599_A_U
1yi2
A
U
1
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3.448448
1
76.457844
0
0
1
1
1
4v50
BB
U
2,098
null
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U
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null
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identity
basestacks
non-bp
bs
4v50_BB_2098_BB_2099_U_U
UU
4V50_BB_2098_BB_2099_U_U
4v50
U
U
1
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4.509176
3.383774
1.48446
6.725155
3.753815
0
null
0
0
0
1
1
3j9w
AA
G
103
null
AA
C
104
null
3.306
identity
basestacks
non-bp
bs
3j9w_AA_103_AA_104_G_C
CG
3J9W_AA_103_AA_104_G_C
3j9w
G
C
1
11.337137
5.399717
3.421288
2.422004
11.337137
3.306022
2
101.625576
2
1
1
1
1
5ew4
A
C
7
null
A
C
13
null
16.5572
identity
non-interacting
non-bp
non-bs
5ew4_A_7_A_13_C_C
CC
5EW4_A_7_A_13_C_C
5ew4
C
C
1
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14.867497
0
41.375753
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0
null
0
0
0
1
1
1yi2
0
G
2,543
null
0
G
2,617
null
2.9374
identity
basestacks
non-bp
bs
1yi2_0_2543_0_2617_G_G
GG
1YI2_0_2543_0_2617_G_G
1yi2
G
G
1
20.311318
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3.202857
0
20.311318
2.937392
2
84.317455
0
0
1
1
1
1yi2
0
A
1,191
null
0
A
1,193
null
3.4064
identity
basestacks
non-bp
bs
1yi2_0_1191_0_1193_A_A
AA
1YI2_0_1191_0_1193_A_A
1yi2
A
A
1
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3.49354
1
90.493048
1
1
1
1
1
3j9w
AA
A
1,128
null
AA
A
1,188
null
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identity
basestacks
non-bp
bs
3j9w_AA_1128_AA_1188_A_A
AA
3J9W_AA_1128_AA_1188_A_A
3j9w
A
A
1
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3.467431
0
26.801388
3.240556
1
79.431713
0
0
1
1
1
6ff7
2
C
5
null
6
A
92
null
5.4514
identity
non-interacting
non-bp
non-bs
6ff7_2_5_6_92_C_A
AC
6FF7_2_5_6_92_C_A
6ff7
C
A
1
13.09101
13.827952
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0
13.09101
6.035717
0
null
0
0
0
1
1
3j9w
BA
G
255
null
BA
G
433
null
3.0386
identity
basepair
bp
non-bs
3j9w_BA_255_BA_433_G_G
GG
3J9W_BA_255_BA_433_G_G
3j9w
G
G
1
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2.522433
0
65.398647
3.038593
1
122.343599
1
1
1
1
1
1yi2
0
U
917
null
0
A
2,395
null
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identity
basepair
bp
non-bs
1yi2_0_917_0_2395_U_A
AU
1YI2_0_917_0_2395_U_A
1yi2
U
A
1
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0
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0
null
0
0
0
1
1
4v50
BB
U
766
null
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U
767
null
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identity
basestacks
non-bp
bs
4v50_BB_766_BB_767_U_U
UU
4V50_BB_766_BB_767_U_U
4v50
U
U
1
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0
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1
120.731461
1
1
1
1
1
1yi2
0
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null
0
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null
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identity
basestacks
non-bp
bs
1yi2_0_1852_0_1878_A_G
AG
1YI2_0_1852_0_1878_A_G
1yi2
A
G
1
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0
18.88266
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0
null
0
0
0
1
1
1yi2
0
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2,557
null
0
A
2,800
null
2.845
identity
basestacks
non-bp
bs
1yi2_0_2557_0_2800_U_A
AU
1YI2_0_2557_0_2800_U_A
1yi2
U
A
1
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0
33.235012
3.128435
2
141.554025
1
1
1
1
1
3j9w
AA
U
304
null
AA
G
309
null
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identity
basepair
bp
non-bs
3j9w_AA_304_AA_309_U_G
GU
3J9W_AA_304_AA_309_U_G
3j9w
U
G
1
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0.410711
0
3.325539
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2
121.741491
2
1
1
1
1
1yi2
0
G
800
null
0
C
813
null
2.6027
identity
basepair
bp
non-bs
1yi2_0_800_0_813_G_C
CG
1YI2_0_800_0_813_G_C
1yi2
G
C
1
11.572294
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0.181029
0
11.572294
2.602657
4
122.771227
3
1
1
1
1
2zjq
X
C
1,003
null
X
A
1,004
null
2.9465
identity
basepair
bp
non-bs
2zjq_X_1003_X_1004_C_A
AC
2ZJQ_X_1003_X_1004_C_A
2zjq
C
A
1
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0
11.629119
3.837868
0
null
0
0
0
1
1
3j9w
AA
U
599
null
AA
A
658
null
2.8484
identity
basepair
bp
non-bs
3j9w_AA_599_AA_658_U_A
AU
3J9W_AA_599_AA_658_U_A
3j9w
U
A
1
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10.506306
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0
7.610873
2.848388
2
112.169018
2
1
1
1
1
4lf5
A
U
49
null
A
U
365
null
2.9584
identity
basepair
bp
non-bs
4lf5_A_49_A_365_U_U
UU
4LF5_A_49_A_365_U_U
4lf5
U
U
1
30.373492
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0.85773
0
30.373492
2.958423
1
112.868347
1
1
1
1
1
1yi2
0
G
1,134
null
0
C
1,229
null
3.1209
identity
basepair
bp
non-bs
1yi2_0_1134_0_1229_G_C
CG
1YI2_0_1134_0_1229_G_C
1yi2
G
C
1
8.614859
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2.891898
0
8.614859
3.120944
1
94.91994
1
1
1
1
1
2zjq
X
A
2,331
null
X
A
2,345
null
2.9875
identity
basestacks
non-bp
bs
2zjq_X_2331_X_2345_A_A
AA
2ZJQ_X_2331_X_2345_A_A
2zjq
A
A
1
12.243047
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12.243047
3.59593
0
null
0
0
0
1
1
6ywy
A
A
12
null
A
U
21
null
24.4698
identity
non-interacting
non-bp
non-bs
6ywy_A_12_A_21_A_U
AU
6YWY_A_12_A_21_A_U
6ywy
A
U
1
69.505728
29.894877
15.283162
0
69.505728
24.469806
0
null
0
0
0
1
1
2zjq
X
C
133
null
X
A
139
null
2.8488
identity
basestacks
non-bp
bs
2zjq_X_133_X_139_C_A
AC
2ZJQ_X_133_X_139_C_A
2zjq
C
A
1
21.819416
7.313712
3.577594
0.232555
21.819416
3.672254
0
null
0
0
0
1
1
6zxf
2
C
188
null
2
C
212
null
3.2323
identity
basepair
bp
non-bs
6zxf_2_188_2_212_C_C
CC
6ZXF_2_188_2_212_C_C
6zxf
C
C
1
7.434469
7.303769
2.723288
0
7.434469
4.152387
0
null
0
0
0
1
1
3j9w
AA
C
378
null
AA
G
400
null
3.2417
identity
basestacks
non-bp
bs
3j9w_AA_378_AA_400_C_G
CG
3J9W_AA_378_AA_400_C_G
3j9w
C
G
1
5.21989
7.526294
3.211501
0
5.21989
3.332891
3
113.283403
1
1
1
1
1
2zjq
X
G
1,066
null
X
A
1,096
null
3.0489
identity
basepair
bp
non-bs
2zjq_X_1066_X_1096_G_A
AG
2ZJQ_X_1066_X_1096_G_A
2zjq
G
A
1
18.572099
8.363468
1.125263
0
18.572099
3.048909
1
114.272299
1
1
1
1
1
5jch
U
G
1
null
V
U
7
null
9.4968
identity
non-interacting
non-bp
non-bs
5jch_U_1_V_7_G_U
GU
5JCH_U_1_V_7_G_U
5jch
G
U
1
21.875757
17.813405
7.896339
0
21.875757
10.453009
0
null
0
0
0
1
1
2fmt
D
A
72
null
D
A
73
null
3.292
identity
basestacks
non-bp
bs
2fmt_D_72_D_73_A_A
AA
2FMT_D_72_D_73_A_A
2fmt
A
A
1
6.034357
4.881966
3.41224
2.965148
6.034357
3.292029
1
102.446656
1
1
1
1
1
3j9w
AX
C
71
null
AX
C
72
null
2.9562
identity
basestacks
non-bp
bs
3j9w_AX_71_AX_72_C_C
CC
3J9W_AX_71_AX_72_C_C
3j9w
C
C
1
21.492923
5.768624
3.774919
1.706232
21.492923
3.867865
0
null
0
0
0
1
1
1yi2
0
U
751
null
0
G
752
null
3.323
identity
basestacks
non-bp
bs
1yi2_0_751_0_752_U_G
GU
1YI2_0_751_0_752_U_G
1yi2
U
G
1
9.259199
5.402127
3.259895
0
9.259199
3.322949
1
88.431344
0
0
1
1
1
1yi2
0
A
2,321
null
0
A
2,380
null
3.0369
identity
basepair
bp
non-bs
1yi2_0_2321_0_2380_A_A
AA
1YI2_0_2321_0_2380_A_A
1yi2
A
A
1
51.59405
10.941821
0.629154
0
51.59405
3.036887
2
128.489937
2
1
1
1
1
1yi2
0
A
961
null
0
C
1,010
null
3.2221
identity
basestacks
non-bp
bs
1yi2_0_961_0_1010_A_C
AC
1YI2_0_961_0_1010_A_C
1yi2
A
C
1
3.808985
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3.808985
3.417513
1
84.985268
0
0
1
1
1
1yi2
0
A
1,518
null
0
U
1,519
null
3.1454
identity
basestacks
non-bp
bs
1yi2_0_1518_0_1519_A_U
AU
1YI2_0_1518_0_1519_A_U
1yi2
A
U
1
13.643118
5.303872
3.520947
1.098327
13.643118
3.145365
2
103.003269
1
1
1
1
1
3j9w
AA
A
504
null
AA
G
505
null
3.1161
identity
basestacks
non-bp
bs
3j9w_AA_504_AA_505_A_G
AG
3J9W_AA_504_AA_505_A_G
3j9w
A
G
1
12.991152
4.706311
3.37457
0
12.991152
4.212749
0
null
0
0
0
1
1
1yi2
0
C
280
null
0
G
370
null
3.1879
identity
basestacks
non-bp
bs
1yi2_0_280_0_370_C_G
CG
1YI2_0_280_0_370_C_G
1yi2
C
G
1
12.66722
7.113456
3.0423
0
12.66722
3.224582
2
93.314286
1
1
1
1
1
2zjq
X
A
1,996
null
X
U
2,592
null
2.8745
identity
basestacks
non-bp
bs
2zjq_X_1996_X_2592_A_U
AU
2ZJQ_X_1996_X_2592_A_U
2zjq
A
U
1
25.153495
11.038249
2.52564
0
25.153495
2.940717
2
125.774588
1
1
1
1
1