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def uploadResourceFileUsingSession(url, session, resourceName, fileName, fullPath, scannerId): """ upload a file for the resource - e.g. a custom lineage csv file works with either csv for zip files (.csv|.zip) returns rc=200 (valid) & other rc's from the post """ print( "uploading fi...
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from typing import Literal def read_inc_stmt(line: str) -> tuple[Literal["inc"], str] | None: """Attempt to read INCLUDE statement""" inc_match = FRegex.INCLUDE.match(line) if inc_match is None: return None inc_path: str = inc_match.group(1) return "inc", inc_path
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def sent2vec(s, model): """ Transform a sentence to a vector. Pre: No parameters may be None. Args: s: The sentence to transform. model: A word2vec model. Returns: A vector, representing the given sentence. """ words = word_tokenize(s.lower()) # Stopwords and numbers m...
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def subnet_group_present( name, subnet_ids=None, subnet_names=None, description=None, tags=None, region=None, key=None, keyid=None, profile=None, ): """ Ensure ElastiCache subnet group exists. .. versionadded:: 2015.8.0 name The name for the ElastiCache subn...
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def GetTensorFlowVersion(vm): """Returns the version of tensorflow installed on the vm. Args: vm: the target vm on which to check the tensorflow version Returns: installed python tensorflow version as a string """ stdout, _ = vm.RemoteCommand( ('echo -e "import tensorflow\nprint(tensorflow.__v...
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import json from typing import OrderedDict def datetime_column_evrs(): """hand-crafted EVRS for datetime columns""" with open( file_relative_path(__file__, "../fixtures/datetime_column_evrs.json") ) as infile: return expectationSuiteValidationResultSchema.load( json.load(infile...
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def pd_df_timeseries(): """Create a pandas dataframe for testing, with timeseries in one column""" return pd.DataFrame( { "time": pd.date_range(start="1/1/2018", periods=100), "A": np.random.randint(0, 100, size=100), } )
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from typing import Union def n_tokens(doc: Union[Doc, Span]): """Return number of words in the document.""" return len(doc._._filtered_tokens)
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def getJobs(numJobs=1): """ Return a list of dictionary data as provided to the plugin `submit` method """ job = {'allowOpportunistic': False, 'bulkid': None, 'cache_dir': TEST_DIR + '/JobCollection_1_0/job_1', 'estimatedDiskUsage': 5000000, 'estimatedJobTime'...
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def create_test_user(): """Creates a new user with random username for testing If two randomly assigned usernames overlap, it will fail """ UserModel = get_user_model() username = '%s_%s' % ('test', uuid4().get_hex()[:10],) user = UserModel.objects.create(username=username) return user
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def make_logical_or_tests(options): """Make a set of tests to do logical_or.""" return _make_logical_tests(tf.logical_or)(options, expected_tf_failures=1)
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def guess(key, values): """ Returns guess values for the parameters of this function class based on the input. Used for fitting using this class. :param key: :param values: :return: """ return [min(values)-max(values), (max(key)-min(key))/3, min(values)]
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from datetime import datetime import time def add_metadata_values_to_record(record_message, schema_message): """Populate metadata _sdc columns from incoming record message The location of the required attributes are fixed in the stream """ extended_record = record_message['record'] extended_record...
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from datetime import datetime def manipulate_reservation_action(request: HttpRequest, default_foreward_url: str): """ This function is used to alter the reservation beeing build inside a cookie. This function automatically crafts the required response. """ js_string: str = "" r: GroupReservati...
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def _dense_to_sparse(data): """Convert a numpy array to a tf.SparseTensor.""" indices = np.where(data) return tf.SparseTensor( np.stack(indices, axis=-1), data[indices], dense_shape=data.shape)
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def getflookup(facetid): """ find out if a facet with this id has been saved to the facet_files table """ found = FacetLookup.objects.all().values_list('graphdb', flat=True).get(id=facetid) if found: return True else: return False
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def numeric_to_string(year): """ Convert numeric year to string """ if year < 0 : yearstring = "{}BC".format(year*-1) elif year >= 0: yearstring = "{}AD".format(year) else: raise return yearstring
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def _get_num_ve_sve_and_max_num_cells(cell_fracs): """ Calculate the num_ve, num_sve and max_num_cells Parameters ---------- cell_fracs : structured array, optional A sorted, one dimensional array, each entry containing the following fields: :idx: int Th...
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from datetime import datetime def is_void(at): """Returns True if the given object is an ``adatetime`` with all of its attributes equal to None. """ if isinstance(at, datetime): return False return all((getattr(at, attr) is None) for attr in adatetime.units)
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def _get_metric_fn(params): """Get the metrix fn used by model compile.""" batch_size = params["batch_size"] def metric_fn(y_true, y_pred): """Returns the in_top_k metric.""" softmax_logits = y_pred logits = tf.slice(softmax_logits, [0, 1], [batch_size, 1]) # The dup mask should be obtained from...
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def check(): """Check if all required modules are present. Returns 0 on success, non-zero on error. """ flag = 0 for package in import_list: try: exec( "import " + package ) except Exception: log.error( "Missing module: %s", package ) flag = True ...
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def flip_nums(text): """ flips numbers on string to the end (so 2019_est --> est_2019)""" if not text: return '' i = 0 s = text + '_' while text[i].isnumeric(): s += text[i] i += 1 if text[i] == '_': i += 1 return s[i:]
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def nnls(A, b, k=None, maxiter=None): """ Compute the least-squares solution to the equation ``A @ x = b`` subject to the nonnegativity constraints ``x[:k] >= 0``. Parameters ---------- A : array_like, shape (m, n) Matrix `A` as shown above. b : array_like, shape (m,) Right-...
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def extent2(texture): """ Returns the extent of the image data (0.0-1.0, 0.0-1.0) inside its texture owner. Textures have a size power of 2 (512, 1024, ...), but the actual image can be smaller. For example: a 400x250 image will be loaded in a 512x256 texture. Its extent is (0.78, 0.98), the...
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def calculate_handlen(hand): """ Returns the length (number of letters) in the current hand. hand: dictionary (string-> int) returns: integer """ # Store the total length of the hand hand_len = 0 # For every letter in the hand for key in hand.keys(): # Add the number of...
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def add_fieldmap(fieldmap: BIDSFile, layout: BIDSLayout) -> dict: """ Locates fieldmap-related json file and adds them in an appropriate dictionary with keys that describe their directionality Parameters ---------- fieldmap : BIDSFile Fieldmap's NIfTI layout : BIDSLayout BIDSLay...
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def fit_plane_lstsq(XYZ): """ Fits a plane to a point cloud. Where z=a.x+b.y+c; Rearranging: a.x+b.y-z+c=0 @type XYZ: list @param XYZ: list of points @rtype: np.array @return: normalized normal vector of the plane in the form C{(a,b,-1)} """ [rows, cols] = XYZ.shape G = np.ones(...
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def clean_name(name: str) -> str: """Clean a string by capitalizing and removing extra spaces. Args: name: the name to be cleaned Returns: str: the cleaned name """ name = " ".join(name.strip().split()) return str(titlecase.titlecase(name))
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from typing import Callable from re import T from typing import List def pull_list(buf: Buffer, capacity: int, func: Callable[[], T]) -> List[T]: """ Pull a list of items. """ items = [] with pull_block(buf, capacity) as length: end = buf.tell() + length while buf.tell() < end: ...
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def ResNet( stack_fn, preact, use_bias, model_name='resnet', include_top=True, weights='imagenet', input_tensor=None, input_shape=None, pooling=None, classes=1000, classifier_activation='softmax', bottomright_maxpool_test=False, use_group_norm=False, **kwargs): """Instantiates the Re...
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import yaml def read_yaml(yaml_path): """ Read yaml file from the path :param yaml_path: :return: """ stream = open(yaml_path, "r") docs = yaml.load_all(stream) result = dict() for doc in docs: for k, v in doc.items(): result[k] = v return result
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def _server_allow_run_on_save() -> bool: """Allows users to automatically rerun when app is updated. Default: true """ return True
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def _strip_schema(url): """Returns the url without the s3:// part""" result = urlparse(url) return result.netloc + result.path
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def simple_word_tokenize(text, _split=GROUPING_SPACE_REGEX.split): """ Split text into tokens. Don't split by a hyphen. Preserve punctuation, but not whitespaces. """ return [t for t in _split(text) if t and not t.isspace()]
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def merge_strategy(media_identifier, target_site, sdc_data, strategy): """ Check if the file already holds Structured Data, if so resolve what to do. @param media_identifier: Mid of the file @param target_site: pywikibot.Site object to which file should be uploaded @param sdc_data: internally forma...
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def convert_translations_to_dict(js_translations): """Convert a GNUTranslations object into a dict for jsonifying. Args: js_translations: GNUTranslations object to be converted. Returns: A dictionary representing the GNUTranslations object. """ plural, n_plural = _get_plural_forms(...
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import asyncio def reduce(coro, iterable, initializer=None, limit=1, right=False, loop=None): """ Apply function of two arguments cumulatively to the items of sequence, from left to right, so as to reduce the sequence to a single value. Reduction will be executed sequentially without concurrency, ...
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def sigm_temp(base_sim_param, assumptions, t_base_type): """Calculate base temperature depending on sigmoid diff and location Parameters ---------- base_sim_param : dict Base simulation assumptions assumptions : dict Dictionary with assumptions Return ------ t_base_cy :...
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import select import socket def is_socket_closed(sock): """Check if socket ``sock`` is closed.""" if not sock: return True try: if not poll: # pragma nocover if not select: return False try: return bool(select([sock], [], [], 0.0)[...
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def _fit_ovo_binary(estimator, X, y, i, j): """Fit a single binary estimator (one-vs-one).""" cond = np.logical_or(y == i, y == j) y = y[cond] y_binary = np.empty(y.shape, np.int) y_binary[y == i] = 0 y_binary[y == j] = 1 ind = np.arange(X.shape[0]) return _fit_binary(estimator, X[ind[co...
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def get_implicit_permissions_for_user(user: str, domain=None): """ GetImplicitPermissionsForUser gets implicit permissions for a user or role. Compared to GetPermissionsForUser(), this function retrieves permissions for inherited roles. For example: p, admin, data1, read p, alice, data2, re...
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def Law_f(text): """ :param text: The "text" of this Law """ return '\\begin{block}{Law}\n' + text + '\n\\end{block}\n'
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import operator from typing import OrderedDict def ordered_dict_intersection(first_dict, second_dict, compat=operator.eq): """Return the intersection of two dictionaries as a new OrderedDict. Items are retained if their keys are found in both dictionaries and the values are compatible. Parameters ...
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import scipy def get_cl2cf_matrices(theta_bin_edges, lmin, lmax): """ Returns the set of matrices to go from one entire power spectrum to one binned correlation function. Args: theta_bin_edges (1D numpy array): Angular bin edges in radians. lmin (int): Minimum l. lmax (int): Maxim...
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from operator import concat def series_to_supervised(data, n_in=1, n_out=1, dropnan=True): """ Frame a time series as a supervised learning dataset. Arguments: data: Sequence of observations as a list or NumPy array. n_in: Number of lag observations as input (X). n_out: Number of o...
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import torch def valid_from_done(done): """Returns a float mask which is zero for all time-steps after a `done=True` is signaled. This function operates on the leading dimension of `done`, assumed to correspond to time [T,...], other dimensions are preserved.""" done = done.type(torch.float) ...
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import logging def get_transfer_options(transfer_kind='upload', transfer_method=None): """Returns hostnames that the current host can upload or download to. transfer_kind: 'upload' or 'download' transfer_method: is specified and not None, return only hosts with which we can work using...
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def calc_utility_np(game, iter): """Calc utility of current position Parameters ---------- game : camel up game Camel up game class iter : int Iterations to run the monte carlo simulations Returns ------- np.array Numpy structured array with expected utilities ...
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def add_masses(line, mass_light, mass_heavy): """ Add m/z information in the output lines """ new_line = "{} {} {}\n".format(round_masses(mass_light), round_masses(mass_heavy), line) return new_line
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def load_r_ind_sent_bars(): """ Loads the random index-barcodes of the actual networks """ bars = [] for text in texts: bars.append(np.load('Textbooks/{}/r_ind_sent_bars.npy'.format(text))) return bars
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import pickle def load_pickle(indices, image_data): """" 0: Empty 1: Active 2: Inactive """ size = 13 # image_data = "./data/images.pkl" with open(image_data, "rb") as f: images = pickle.load(f) x = [] y = [] n = [] cds = [] for idx in indices: D...
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def summarize_vref_locs(locs:TList[BaseObjLocation]) -> pd.DataFrame: """ Return a table with cols (partition, num vrefs) """ vrefs_by_partition = group_like(objs=locs, labels=[loc.partition for loc in locs]) partition_sort = sorted(vrefs_by_partition) return pd.DataFrame({ 'Partition': ...
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def rescale_list_to_range(original, limits): """ Linearly rescale values in original list to limits (minimum and maximum). :example: >>> rescale_list_to_range([1, 2, 3], (0, 10)) [0.0, 5.0, 10.0] >>> rescale_list_to_range([1, 2, 3], (-10, 0)) [-10.0, -5.0, 0.0] >>> rescale_list_to_rang...
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from typing import Optional from typing import Union from typing import Mapping def build_list_request( filters: Optional[dict[str, str]] = None ) -> Union[IssueListInvalidRequest, IssueListValidRequest]: """Create request from filters.""" accepted_filters = ["obj__eq", "state__eq", "title__contains"] ...
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def get_ratings(labeled_df): """Returns list of possible ratings.""" return labeled_df.RATING.unique()
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from typing import Dict def split_edge_cost( edge_cost: EdgeFunction, to_split: LookupToSplit ) -> Dict[Edge, float]: """Assign half the cost of the original edge to each of the split edges. Args: edge_cost: Lookup from edges to cost. to_split: Lookup from original edges to pairs of split...
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def get_ants_brain(filepath, metadata, channel=0): """Load .nii brain file as ANTs image.""" nib_brain = np.asanyarray(nib.load(filepath).dataobj).astype('uint32') spacing = [float(metadata.get('micronsPerPixel_XAxis', 0)), float(metadata.get('micronsPerPixel_YAxis', 0)), float...
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def numpy_max(x): """ Returns the maximum of an array. Deals with text as well. """ return numpy_min_max(x, lambda x: x.max(), minmax=True)
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import copy def get_train_val_test_splits(X, y, max_points, seed, confusion, seed_batch, split=(2./3, 1./6, 1./6)): """Return training, validation, and test splits for X and y. Args: X: features y: targets max_points: # of points to use when creating splits. seed: se...
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def require_apikey(key): """ Decorator for view functions and API requests. Requires that the user pass in the API key for the application. """ def _wrapped_func(view_func): def _decorated_func(*args, **kwargs): passed_key = request.args.get('key', None) if passed_ke...
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from math import cos,pi from numpy import zeros def gauss_legendre(ordergl,tol=10e-14): """ Returns nodal abscissas {x} and weights {A} of Gauss-Legendre m-point quadrature. """ m = ordergl + 1 def legendre(t,m): p0 = 1.0; p1 = t for k in range(1,m): p = ((2.0*k + ...
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def simple_message(msg, parent=None, title=None): """ create a simple message dialog with string msg. Optionally set the parent widget and dialog title """ dialog = gtk.MessageDialog( parent = None, type = gtk.MESSAGE_INFO, buttons = gtk.BUTTONS_OK, ...
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def accept(value): """Accept header class and method decorator.""" def accept_decorator(t): set_decor(t, 'header', CaseInsensitiveDict({'Accept': value})) return t return accept_decorator
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from pathlib import Path def screenshot(widget, path=None, dir=None): """Save a screenshot of a Qt widget to a PNG file. By default, the screenshots are saved in `~/.phy/screenshots/`. Parameters ---------- widget : Qt widget Any widget to capture (including OpenGL widgets). path : ...
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def xyz_to_rtp(x, y, z): """ Convert 1-D Cartesian (x, y, z) coords. to 3-D spherical coords. (r, theta, phi). The z-coord. is assumed to be anti-parallel to the r-coord. when theta = 0. """ # First establish 3-D versions of x, y, z xx, yy, zz = np.meshgrid(x, y, z, indexing='ij') ...
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import re def irccat_targets(bot, targets): """ Go through our potential targets and place them in an array so we can easily loop through them when sending messages. """ result = [] for s in targets.split(','): if re.search('^@', s): result.append(re.sub('^@', '', s)) ...
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import struct def _watchos_stub_partial_impl( *, ctx, actions, binary_artifact, label_name, watch_application): """Implementation for the watchOS stub processing partial.""" bundle_files = [] providers = [] if binary_artifact: # Create intermedi...
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def catMullRomFit(p, nPoints=100): """ Return as smoothed path from a list of QPointF objects p, interpolating points if needed. This function takes a set of points and fits a CatMullRom Spline to the data. It then interpolates the set of points and outputs a smoothed path with the desired ...
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def pdf_from_ppf(quantiles, ppfs, edges): """ Reconstruct pdf from ppf and evaluate at desired points. Parameters ---------- quantiles: numpy.ndarray, shape=(L) L quantiles for which the ppf_values are known ppfs: numpy.ndarray, shape=(1,...,L) Corresponding ppf-values for all ...
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import types import re def get_arg_text(ob): """Get a string describing the arguments for the given object""" arg_text = "" if ob is not None: arg_offset = 0 if type(ob) in (types.ClassType, types.TypeType): # Look for the highest __init__ in the class chain. fob = ...
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import random def create_ses_weights(d, ses_col, covs, p_high_ses, use_propensity_scores): """ Used for training preferentially on high or low SES people. If use_propensity_scores is True, uses propensity score matching on covs. Note: this samples from individual images, not from individual people. I thi...
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def decoder_g(zxs): """Define decoder.""" with tf.variable_scope('decoder', reuse=tf.AUTO_REUSE): hidden_layer = zxs for i, n_hidden_units in enumerate(FLAGS.n_hidden_units_g): hidden_layer = tf.layers.dense( hidden_layer, n_hidden_units, activation=tf.nn.relu, ...
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def make_evinfo_str(json_str): """ [メソッド概要] DB登録用にイベント情報を文字列に整形 """ evinfo_str = '' for v in json_str[EventsRequestCommon.KEY_EVENTINFO]: if evinfo_str: evinfo_str += ',' if not isinstance(v, list): evinfo_str += '"%s"' % (v) else: ...
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def parse_cisa_data(parse_file: str) -> object: """Parse the CISA Known Exploited Vulnerabilities file and create a new dataframe.""" inform("Parsing results") # Now parse CSV using pandas, GUID is CVE-ID new_dataframe = pd.read_csv(parse_file, parse_dates=['dueDate', 'dateAdded']) # extend datafra...
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def camera(): """Video streaming home page.""" return render_template('index.html')
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import tqdm def fit_alternative(model, dataloader, optimizer, train_data, labelled=True): """ fit method using alternative loss, executes one epoch :param model: VAE model to train :param dataloader: input dataloader to fatch batches :param optimizer: which optimizer to utilize :param train_da...
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def FlagOverrider(**flag_kwargs): """A Helpful decorator which can switch the flag values temporarily.""" return flagsaver.flagsaver(**flag_kwargs)
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def cli(ctx, path, max_depth=1): """List files available from a remote repository for a local path as a tree Output: None """ return ctx.gi.file.tree(path, max_depth=max_depth)
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def warp_p(binary_img): """ Warps binary_image using hard coded source and destination vertices. Returns warped binary image, warp matrix and inverse matrix. """ src = np.float32([[580, 450], [180, 720], [1120, 720], [700, ...
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def _get_xml_sps(document): """ Download XML file and instantiate a `SPS_Package` Parameters ---------- document : opac_schema.v1.models.Article Returns ------- dsm.data.sps_package.SPS_Package """ # download XML file content = reqs.requests_get_content(document.xml) x...
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def plot_confusion_matrix(ax, y_true, y_pred, classes, normalize=False, title=None, cmap=plt.cm.Blues): """ From scikit-learn example: https://scikit-learn.org/stable/auto_examples/model_selection/plot_confusion_matrix.html ...
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def _in_docker(): """ Returns: True if running in a Docker container, else False """ with open('/proc/1/cgroup', 'rt') as ifh: if 'docker' in ifh.read(): print('in docker, skipping benchmark') return True return False
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def asPosition(flags): """ Translate a directional flag from an actions into a tuple indicating the targeted tile. If no directional flag is found in the inputs, returns (0, 0). """ if flags & NORTH: return 0, 1 elif flags & SOUTH: return 0, -1 elif flags & EAST: ...
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from nibabel import load import numpy as np def pickvol(filenames, fileidx, which): """Retrieve index of named volume Parameters ---------- filenames: list of 4D file names fileidx: which 4D file to look at which: 'first' or 'middle' Returns ------- idx: index of first or middle ...
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def merge(d, **kwargs): """Recursively merges given kwargs int to a dict - only if the values are not None. """ for key, value in kwargs.items(): if isinstance(value, dict): d[key] = merge(d.get(key, {}), **value) elif value is not None: d[key] = value return ...
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def init_config_flow(hass): """Init a configuration flow.""" flow = config_flow.VelbusConfigFlow() flow.hass = hass return flow
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from typing import Dict from datetime import datetime from typing import FrozenSet def read_service_ids_by_date(path: str) -> Dict[datetime.date, FrozenSet[str]]: """Find all service identifiers by date""" feed = load_raw_feed(path) return _service_ids_by_date(feed)
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def get_all_services(org_id: str) -> tuple: """ **public_services_api** returns a service governed by organization_id and service_id :param org_id: :return: """ return services_view.return_services(organization_id=org_id)
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def get_initializer(initializer_range=0.02): """Creates a `tf.initializers.truncated_normal` with the given range. Args: initializer_range: float, initializer range for stddev. Returns: TruncatedNormal initializer with stddev = `initializer_range`. """ return tf.keras.initializers...
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import math def findh_s0(h_max, h_min, q): """ Znajduje siłę naciągu metodą numeryczną (wykorzystana metoda bisekcji), należy podać granice górną i dolną dla metody bisekcji :param h_max: Górna granica dla szukania siły naciągu :param h_min: Dolna granica dla szukania siły naciągu :param q: c...
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def velocity_dependent_covariance(vel): """ This function computes the noise in the velocity channel. The noise generated is gaussian centered around 0, with sd = a + b*v; where a = 0.01; b = 0.05 (Vul, Frank, Tenenbaum, Alvarez 2009) :param vel: :return: covariance """ cov = [] for...
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def msd_Correlation(allX): """Autocorrelation part of MSD.""" M = allX.shape[0] # numpy with MKL (i.e. intelpython distribution), the fft wont be # accelerated unless axis along 0 or -1 # perform FT along n_frame axis # (n_frams, n_particles, n_dim) -> (n_frames_Ft, n_particles, n_dim) allFX...
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import math def convert_table_value(fuel_usage_value): """ The graph is a little skewed, so this prepares the data for that. 0 = 0 1 = 25% 2 = 50% 3 = 100% 4 = 200% 5 = 400% 6 = 800% 7 = 1600% (not shown) Intermediate values scale between those values. (5.5 is 600%) "...
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import TestWin def FindMSBuildInstallation(msvs_version = 'auto'): """Returns path to MSBuild for msvs_version or latest available. Looks in the registry to find install location of MSBuild. MSBuild before v4.0 will not build c++ projects, so only use newer versions. """ registry = TestWin.Registry() ms...
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def create_toc_xhtml(metadata: WorkMetadata, spine: list[Matter]) -> str: """ Load the default `toc.xhtml` file, and generate the required terms for the creative work. Return xhtml as a string. Parameters ---------- metadata: WorkMetadata All the terms for updating the work, not all com...
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def convertSLToNumzero(sl, min_sl=1e-3): """ Converts a (neg or pos) significance level to a count of significant zeroes. Parameters ---------- sl: float Returns ------- float """ if np.isnan(sl): return 0 if sl < 0: sl = min(sl, -min_sl) num_zero = np.log10(-sl) elif sl > 0: ...
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def calibrate_time_domain(power_spectrum, data_pkt): """ Return a list of the calibrated time domain data :param list power_spectrum: spectral data of the time domain data :param data_pkt: a RTSA VRT data packet :type data_pkt: pyrf.vrt.DataPacket :returns: a list containing the calibrated tim...
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def func(x): """ :param x: [b, 2] :return: """ z = tf.math.sin(x[...,0]) + tf.math.sin(x[...,1]) return z
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from typing import Tuple from typing import Dict from typing import Any from typing import List def parse_handler_input(handler_input: HandlerInput, ) -> Tuple[UserMessage, Dict[str, Any]]: """Parses the ASK-SDK HandlerInput into Slowbro UserMessage. Returns the UserMessage object and...
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def _validate_show_for_invoking_user_only(show_for_invoking_user_only): """ Validates the given `show_for_invoking_user_only` value. Parameters ---------- show_for_invoking_user_only : `None` or `bool` The `show_for_invoking_user_only` value to validate. Returns ------- show_fo...
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