text stringlengths 185 73.3k | repo stringlengths 7 100 | path stringlengths 4 146 | language stringclasses 7
values | hash stringlengths 16 16 | score float64 7 8.5 | stars int64 0 237k |
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"""Schema utils for commonmeta-py"""
from __future__ import annotations
from functools import lru_cache
from os import path
from typing import Any
import orjson as json
from .base_utils import normalize_xml_dict
# jsonschema and xmlschema are imported inside the functions that use them, not
# at module scope: betw... | front-matter/commonmeta-py | commonmeta/schema_utils.py | .py | ced958cbe0bd0af0 | 7.65 | 19 |
"""Web translators for commonmeta. Using BeautifulSoup to extract metadata from web pages."""
from __future__ import annotations
import re
from typing import TYPE_CHECKING
from furl import furl
from .doi_utils import doi_as_url
if TYPE_CHECKING:
from bs4 import BeautifulSoup
def web_translator(soup: Beautifu... | front-matter/commonmeta-py | commonmeta/translators.py | .py | 628d321d9ec29898 | 7.65 | 19 |
"""Bibtex writer for commonmeta-py"""
from __future__ import annotations
from typing import TYPE_CHECKING
from bibtexparser.bibdatabase import BibDatabase
from bibtexparser.bwriter import BibTexWriter
from bibtexparser.customization import page_double_hyphen
from ..author_utils import authors_as_string
from ..base_... | front-matter/commonmeta-py | commonmeta/writers/bibtex_writer.py | .py | a0fa9bf444d0fbad | 7.65 | 19 |
"""Citation writer for commonmeta-py"""
from __future__ import annotations
import re
from typing import TYPE_CHECKING
import orjson as json
from citeproc import (
Citation,
CitationItem,
CitationStylesBibliography,
CitationStylesStyle,
formatter,
)
from citeproc.source.json import CiteProcJSON
fr... | front-matter/commonmeta-py | commonmeta/writers/citation_writer.py | .py | 347d9a807fc8c4e6 | 7.65 | 19 |
"""Commonmeta writer for commonmeta-py"""
from __future__ import annotations
import re
from typing import TYPE_CHECKING
from ..base_utils import compact, omit, presence, wrap
from ..schema_utils import COMMONMETA_SCHEMA_URI
if TYPE_CHECKING:
from ..metadata import Metadata, MetadataList
def collapse_whitespac... | front-matter/commonmeta-py | commonmeta/writers/commonmeta_writer.py | .py | 3be72abd933d01c0 | 7.65 | 19 |
"""CSL-JSON writer for commonmeta-py"""
from __future__ import annotations
from typing import TYPE_CHECKING
from ..base_utils import compact, parse_attributes, presence, wrap
from ..constants import CM_TO_CSL_TRANSLATIONS
from ..date_utils import get_date_parts
from ..doi_utils import doi_from_url
from ..utils impor... | front-matter/commonmeta-py | commonmeta/writers/csl_writer.py | .py | ae82580e61ac2051 | 7.65 | 19 |
"""ORCID writer for commonmeta-py.
Writes a commonmeta *person* entity as `ORCID 3.0 record JSON
<https://info.orcid.org/documentation/>`_ - the shape the ORCID API's
``/record`` endpoint serves (identity under ``person``, employments and
educations under ``activities-summary``), and the inverse of
:mod:`commonmeta.re... | front-matter/commonmeta-py | commonmeta/writers/orcid_writer.py | .py | 8d663c865fac80ec | 7.65 | 19 |
"""RIS writer for commonmeta-py"""
from __future__ import annotations
from typing import TYPE_CHECKING
from ..base_utils import compact, parse_attributes, wrap
from ..constants import CM_TO_RIS_TRANSLATIONS
from ..doi_utils import doi_from_url
from ..utils import to_ris
if TYPE_CHECKING:
from ..metadata import ... | front-matter/commonmeta-py | commonmeta/writers/ris_writer.py | .py | a5b3a630d351f380 | 7.65 | 19 |
"""ROR writer for commonmeta-py.
Writes a commonmeta *organization* entity as a `ROR v2 API
<https://ror.readme.io/v2/docs/data-structure>`_ record: the inverse of
:mod:`commonmeta.readers.ror_reader`, so a ROR record read and written back
returns to its original shape.
Only what commonmeta models is written. A ROR r... | front-matter/commonmeta-py | commonmeta/writers/ror_writer.py | .py | d184f79e8395f6b7 | 7.65 | 19 |
import collections
import logging
import re
from abc import ABC, abstractmethod
from typing import Dict
import dateparser
import lxml.etree
import newspaper
import readability
import trafilatura
from boilerpy3 import extractors as bp3_extractors
from bs4 import BeautifulSoup
from goose3 import Goose
from lxml.html imp... | mediacloud/metadata-lib | mcmetadata/content.py | .py | aab4d2968f367bb1 | 7.64 | 18 |
import logging
import re
from typing import Optional
import py3langid as langid
import trafilatura.utils
logger = logging.getLogger(__name__)
meta_tag_pattern1 = re.compile(
r"<meta[^>]* (?:name|property)=.dc\.language.[^>]* content=\"([^\"]+)\"",
re.S | re.I,
)
meta_tag_pattern2 = re.compile(
r"<meta[^>... | mediacloud/metadata-lib | mcmetadata/languages.py | .py | 5b4957730b957832 | 7.64 | 18 |
"""
Incantations for reqeusts to allow fetching from as many sites as
Scrapy does.
This was originally in mediacloud/story-indexer, but copied to
metadata-lib to enable more mediacloud projects to consistently fetch
web pages.
WARNING: Do NOT use this if you care about data security/privacy.
This has been added to me... | mediacloud/metadata-lib | mcmetadata/requests_arcana.py | .py | 846139005535136b | 7.64 | 18 |
import hashlib
import logging
import os
import mcmetadata.webpages as webpages
test_dir = os.path.dirname(os.path.realpath(__file__))
fixtures_dir = os.path.join(test_dir, "fixtures")
# mcmetadata.webpages.DEFAULT_TIMEOUT_SECS = 500 # reset to a longer timeout for tests
logger = logging.getLogger(__name__)
def re... | mediacloud/metadata-lib | mcmetadata/test/__init__.py | .py | 07313ce703a56149 | 8.14 | 18 |
import datetime as dt
import unittest
from parameterized import parameterized
from .. import dates
from . import read_fixture
class TestDates(unittest.TestCase):
@parameterized.expand(
[
# subhead
(
"https://web.archive.org/web/https://www.sun-sentinel.com/commun... | mediacloud/metadata-lib | mcmetadata/test/test_dates.py | .py | 9f5986f773c58820 | 7.14 | 18 |
"""
Extracted from django.utils.html
"""
from html.parser import HTMLParser
class MLStripper(HTMLParser):
def __init__(self):
super().__init__(convert_charrefs=False)
self.reset()
self.fed = []
def handle_data(self, d):
self.fed.append(d)
def handle_entityref(self, name)... | mediacloud/metadata-lib | mcmetadata/text.py | .py | 7d814609041d6c91 | 7.64 | 18 |
import logging
import re
import string
from html import unescape
from typing import Optional
from . import text
logger = logging.getLogger(__name__)
SHORT_TITLE_THRESHOLD = 20
title_meta_pattern = "(?:og:title|hdl|twitter:title|dc.title|dcterms.title|title)"
meta_tag_pattern_1 = re.compile(
r"<meta[^>]*(?:name|... | mediacloud/metadata-lib | mcmetadata/titles.py | .py | e2906d44975b9fea | 7.64 | 18 |
import hashlib
import ipaddress
import logging
import pathlib
import re
from typing import Optional
import tldextract
import url_normalize
from furl import furl
from .urlshortners import URL_SHORTENER_HOSTNAMES
# a list of high-volume domains that Media Cloud has historically ingested from, but are not news domains
... | mediacloud/metadata-lib | mcmetadata/urls.py | .py | ee571af05dfbbac2 | 7.64 | 18 |
"""
Run URLs from our production system through the pipeline and save a CSV that lets us compare results to see if
this code produces similar metadata to the system the heuristics were extracted from. Useful for validating that
we are getting results we expect from the code as we evaluate different libraries and soluti... | mediacloud/metadata-lib | scripts/generate_comparison.py | .py | 37a321fd0a84c6ec | 7.64 | 18 |
#!/usr/bin/python
#
# Dummy test file for some of the e2e tests.
import unittest
class CoverageOutputTest(unittest.TestCase):
def test_stuff(self):
"""Test that the flux capacitor is correctly calibrated."""
self.assertEqual(2, 2)
| please-build/python-rules | test/coverage_output_test.py | .py | 1447ca7d38a82635 | 7 | 9 |
import os
import pytest
def run(test_names, args):
"""Custom test runner entry point.
This is fairly minimal and serves mostly to demonstrate how to define this as an
entry point.
Args:
test_names: The names of the original test modules to be run (i.e. the things that were
sr... | please-build/python-rules | test/custom_runner/runner.py | .py | 02ac8c79531b1990 | 7 | 9 |
"""Test that data for a test isn't also packed into the .pex."""
import os
import subprocess
import unittest
import zipfile
class DataDepTest(unittest.TestCase):
def test_cannot_import_data_dep(self):
"""Test that the file didn't get packed into the pex."""
import __main__ as pex_main
wi... | please-build/python-rules | test/data_dep_only_test.py | .py | 908add49f27f0af9 | 8 | 9 |
"""Test on deps, data, requires and provides."""
import os
import subprocess
import unittest
class DataDepTest(unittest.TestCase):
def test_direct_dep(self):
"""Test that we can import the module directly."""
from test import data_dep
self.assertEqual(42, data_dep.the_answer())
def ... | please-build/python-rules | test/data_dep_test.py | .py | 0418f057231da103 | 8 | 9 |
from importlib.metadata import PackagePath, files, version, distributions
import os
import unittest
class DistributionMetadataTest(unittest.TestCase):
"""Tests that the pex meta path finder in ModuleDirImport is able to extract distribution
metadata directly from a .dist-info directory inside the pex file.
... | please-build/python-rules | test/distribution_metadata_test.py | .py | 571091e6a12ce7e2 | 8 | 9 |
"""Test for passing flags to python_test."""
import sys
import unittest
class FlagsTest(unittest.TestCase):
def test_flags(self):
self.assertIn("--test_flag", sys.argv)
| please-build/python-rules | test/flags_test.py | .py | e60d28d8dae11a20 | 7 | 9 |
import sys
import unittest
import zipfile
class InterpreterNotIncludedTest(unittest.TestCase):
def test_interpreter_is_not_included(self):
"""Test that we don't include any in-repo interpreter in the .pex file."""
zf = zipfile.ZipFile(sys.argv[0])
names = [name for name in zf.namelist() i... | please-build/python-rules | test/interpreter_not_included_test.py | .py | 55d5dac2032611c5 | 8 | 9 |
"""Tests for namespaced packages that share common folders."""
import unittest
class NamespacedPackagesTest(unittest.TestCase):
def test_namespaced_packages_are_importable(self):
from google.api import auth_pb2
from google.protobuf import message
self.assertIsNotNone(auth_pb2.AuthProvider... | please-build/python-rules | test/namespaced_packages_test.py | .py | fb441a4dc02faa80 | 7.5 | 9 |
import unittest
class TestProtoLibrary(unittest.TestCase):
def test_can_import_library(self):
"""Test that we can import the library.
The real test is at build time, this is really just here to make
sure that it gets built, and we might as well verify things are OK.
"""
f... | please-build/python-rules | test/proto_test.py | .py | df602d8662e7a144 | 7.5 | 9 |
"""
The tests below test out the relative imports within a package
"""
from test.pytest.relative_imports import greetings, name
def test_function_call():
assert greetings() == 'hello world'
assert 1 == 1
def test_name():
assert name == 'TM'
| please-build/python-rules | test/pytest/test_relative_imports.py | .py | 12ef748bfc1063a0 | 7 | 9 |
"""Tests on the pytest runner framework."""
# This isn't normally necessary for pytest, but proves that we're using the correct runner
# (otherwise unittest will just not call any of the test functions and report success)
import pytest
def test_answer():
"""Deceptively simple test, from their examples.
In t... | please-build/python-rules | test/pytest/test_runner.py | .py | 5a3a196f24cf7369 | 8 | 9 |
"""This exists only as a test harness for examining slightly non-trivial coverage output."""
import sys
from collections import defaultdict
def calculate_answer(a, b):
return a * b
def the_answer():
return calculate_answer(
6,
7,
)
| please-build/python-rules | test/python_coverage.py | .py | 6824d3100f3c57b3 | 7 | 9 |
import sys
import unittest
class PythonCoverageTest(unittest.TestCase):
"""Tests that we can import parts of the coverage module.
By default it's not trivial to import binary modules from inside a pex. Also we need to package
relevant versions of the tracer module, which can't work for every OS, but it'd... | please-build/python-rules | test/python_coverage_test.py | .py | 79865999222a84e2 | 8 | 9 |
import importlib.resources
import unittest
class ResourcesTest(unittest.TestCase):
"""Tests that PexDistribution is able to provide access to files that are part of a distribution
via the importlib.resources API.
"""
def test_read_resource_text_file(self):
init = importlib.resources.files("py... | please-build/python-rules | test/resources_test.py | .py | ca0e146d28b6fe60 | 7.5 | 9 |
import sys
import unittest
class NoSiteTest(unittest.TestCase):
def test_no_site_flag_passed(self):
"""Ensures that the Python interpreter was invoked with the -S option."""
self.assertTrue(sys.flags.no_site)
| please-build/python-rules | test/site/no_site_test.py | .py | aef57fedbda8289b | 7 | 9 |
import sys
import unittest
class SiteTest(unittest.TestCase):
def test_no_site_flag_not_passed(self):
"""Ensures that the Python interpreter was *not* invoked with the -S option."""
self.assertFalse(sys.flags.no_site)
| please-build/python-rules | test/site/site_test.py | .py | 52b277106dbe1a4c | 7 | 9 |
"""Tests on source stripping."""
import os
import subprocess
import unittest
import zipfile
class StripSourceTest(unittest.TestCase):
def setUp(self):
self.filename = [x for x in os.environ['DATA'].split(' ') if x.endswith('.pex')][0]
def test_can_run_binary(self):
"""Test that the dependen... | please-build/python-rules | test/strip_source_test.py | .py | 29ee22d00d17f2fd | 8 | 9 |
import unittest
class ZipUnsafeTest(unittest.TestCase):
"""Test importing something that requires zip-unsafety and exploding the pex."""
def test_can_import(self):
from third_party.python.confluent_kafka import cimpl
self.assertIsNotNone(cimpl)
| please-build/python-rules | test/zip_unsafe_test.py | .py | c0bc09df37b25766 | 7 | 9 |
"""Zipfile entry point which supports auto-extracting itself based on zip-safety."""
import os
import runpy
import sys
# Put this pex on the path before anything else.
PEX = os.path.abspath(sys.argv[0])
# This might get overridden down the line if the pex isn't zip-safe.
PEX_PATH = PEX
sys.path = [PEX_PATH] + sys.pat... | please-build/python-rules | tools/please_pex/pex/pex_main.py | .py | 2c550beff920e597 | 7.5 | 9 |
"""Customised test runner to output in JUnit-style XML."""
import os
import sys
# This will get templated in by the build rules.
TEST_NAMES = '__TEST_NAMES__'.split(',')
def initialise_coverage():
"""Imports & initialises the coverage module."""
import coverage
from coverage import control as coverage_c... | please-build/python-rules | tools/please_pex/pex/pex_test_main.py | .py | add0f8131698db17 | 8 | 9 |
"""Internal module for Please builtins."""
from collections import defaultdict
from importlib import import_module, machinery
from importlib.abc import MetaPathFinder
from importlib.metadata import Distribution
from importlib.util import spec_from_loader
import itertools
import os
import re
import sys
import tempfile
... | please-build/python-rules | tools/please_pex/pex/plz.py | .py | efb0c96b9a8d0726 | 7.5 | 9 |
"""Forms for the adminalerts app"""
from django import forms
from django.conf import settings
from django.utils import timezone
# Projectroles dependency
from projectroles.forms import SODARMartorWidget, SODARModelForm
from adminalerts.models import AdminAlert
# Local constants
EMAIL_HELP_CREATE = 'Send alert as e... | bihealth/sodar-core | adminalerts/forms.py | .py | 0b6a44d05f4f31ad | 7.57 | 13 |
"""Models for the adminalerts app"""
import uuid
from django.conf import settings
from django.db import models
from django.utils import timezone
from martor.models import MartorField
# Access Django user model
AUTH_USER_MODEL = getattr(settings, 'AUTH_USER_MODEL', 'auth.User')
class AdminAlert(models.Model):
... | bihealth/sodar-core | adminalerts/models.py | .py | e59b7125f5cad6d7 | 7.57 | 13 |
"""Plugins for the adminalerts app"""
from typing import Optional
from django.contrib.auth import get_user_model
from django.contrib.auth.models import AnonymousUser
from django.urls import reverse
from django.utils import timezone
# Projectroles dependency
from projectroles.models import SODAR_CONSTANTS
from projec... | bihealth/sodar-core | adminalerts/plugins.py | .py | 556338f528918e2f | 7.57 | 13 |
"""Tests for models in the adminalerts app"""
from django.contrib.auth import get_user_model
from django.forms.models import model_to_dict
from django.utils import timezone
from test_plus.test import TestCase
from adminalerts.models import AdminAlert
User = get_user_model()
class AdminAlertMixin:
"""Helper m... | bihealth/sodar-core | adminalerts/tests/test_models.py | .py | 7e4b30bf6b691b4b | 8.07 | 13 |
"""Tests for UI view permissions in the adminalerts app"""
from django.test import override_settings
from django.urls import reverse
# Projectroles dependency
from projectroles.tests.base import SiteAppPermissionTestBase
from adminalerts.tests.test_models import AdminAlertMixin
class AdminalertsPermissionTestBase(... | bihealth/sodar-core | adminalerts/tests/test_permissions.py | .py | b35b238fd3554997 | 7.07 | 13 |
"""Tests for Ajax view permissions in the adminalerts app"""
from django.test import override_settings
from django.urls import reverse
# Projectroles dependency
from projectroles.tests.base import SiteAppPermissionTestBase
from adminalerts.tests.test_models import AdminAlertMixin
class TestAdminAlertActiveToggleAj... | bihealth/sodar-core | adminalerts/tests/test_permissions_ajax.py | .py | fb6b14b061047726 | 8.07 | 13 |
"""Plugin tests for the adminalerts app"""
from test_plus.test import TestCase
from django.urls import reverse
# Projectroles dependency
from projectroles.plugins import SiteAppPluginPoint
from adminalerts.models import AdminAlertDismissal
from adminalerts.urls import urlpatterns
from adminalerts.tests.test_models ... | bihealth/sodar-core | adminalerts/tests/test_plugins.py | .py | 02464980051243e4 | 8.07 | 13 |
"""UI tests for the adminalerts app"""
from django.urls import reverse
from django.utils import timezone
from selenium.common.exceptions import NoSuchElementException
from selenium.webdriver.common.by import By
from selenium.webdriver.support import expected_conditions as ec
from selenium.webdriver.support.ui import ... | bihealth/sodar-core | adminalerts/tests/test_ui.py | .py | cf9dc3c147406b50 | 7.07 | 13 |
"""Tests for UI views in the adminalerts app"""
from django.conf import settings
from django.core import mail
from django.test import override_settings
from django.urls import reverse
from django.utils import timezone
from test_plus.test import TestCase
# Projectroles dependency
from projectroles.app_settings import... | bihealth/sodar-core | adminalerts/tests/test_views.py | .py | b8935791c2b4ca9c | 7.07 | 13 |
"""Tests for Ajax views in the adminalerts app"""
import json
from django.urls import reverse
from adminalerts.models import AdminAlertDismissal
from adminalerts.tests.test_views import AdminalertsViewTestBase
class TestAdminAlertActiveToggleAjaxView(AdminalertsViewTestBase):
"""Tests for AdminAlertActiveToggl... | bihealth/sodar-core | adminalerts/tests/test_views_ajax.py | .py | 3b16f101741b0285 | 8.07 | 13 |
"""Ajax views for the adminalerts app"""
from django.http import HttpResponseBadRequest
from rest_framework.response import Response
# Projectroles dependency
from projectroles.views_ajax import SODARBasePermissionAjaxView
from adminalerts.models import AdminAlert, AdminAlertDismissal
class AdminAlertActiveToggle... | bihealth/sodar-core | adminalerts/views_ajax.py | .py | f0ec4e3003e708ee | 7.57 | 13 |
"""Backend API for the appalerts app"""
from typing import Optional
from django.contrib.auth import get_user_model
from djangoplugins.models import Plugin
from appalerts.models import AppAlert, ALERT_LEVELS
# Projectroles dependency
from projectroles.models import Project
User = get_user_model()
class AppAlert... | bihealth/sodar-core | appalerts/api.py | .py | c94f782b630e43db | 7.57 | 13 |
"""Models for the appalerts app"""
import uuid
from django.core.exceptions import ValidationError
from django.conf import settings
from django.db import models
from djangoplugins.models import Plugin
# Projectroles dependency
from projectroles.models import Project
# Access Django user model
AUTH_USER_MODEL = geta... | bihealth/sodar-core | appalerts/models.py | .py | 29d6db1047db37b0 | 7.57 | 13 |
"""Backend API tests for the appalerts app"""
from django.forms.models import model_to_dict
from django.urls import reverse
from djangoplugins.models import Plugin
from test_plus.test import TestCase
# Projectroles dependency
from projectroles.models import SODAR_CONSTANTS
from projectroles.plugins import PluginAPI
... | bihealth/sodar-core | appalerts/tests/test_api.py | .py | ed4ac10993a2f8a7 | 8.07 | 13 |
"""Model tests for the appalerts app"""
from typing import Optional
from django.contrib.auth import get_user_model
from django.core.exceptions import ValidationError
from django.forms.models import model_to_dict
from django.urls import reverse
from djangoplugins.models import Plugin
from test_plus.test import TestCa... | bihealth/sodar-core | appalerts/tests/test_models.py | .py | 0f1ffd066adb57c1 | 7.07 | 13 |
"""Tests for view permissions in the appalerts app"""
from django.test import override_settings
from django.urls import reverse
# Projectroles dependency
from projectroles.tests.base import SiteAppPermissionTestBase
from appalerts.tests.test_models import AppAlertMixin
class AppalertsPermissionTestBase(AppAlertMix... | bihealth/sodar-core | appalerts/tests/test_permissions.py | .py | 09adf3f7999c2a92 | 7.07 | 13 |
"""Tests for template tags in the appalerts app"""
from django.contrib.auth import get_user_model
from test_plus.test import TestCase
from appalerts.templatetags import appalerts_tags as tags
from appalerts.tests.test_models import AppAlertMixin
User = get_user_model()
# Local constants
ALERT_MSG = 'Test message... | bihealth/sodar-core | appalerts/tests/test_templatetags.py | .py | 4ecec66f8ffd2839 | 8.07 | 13 |
"""UI tests for the appalerts app"""
import time
from django.urls import reverse
from selenium.common.exceptions import NoSuchElementException
from selenium.webdriver.common.by import By
from selenium.webdriver.remote.webelement import WebElement
from selenium.webdriver.support import expected_conditions as ec
from ... | bihealth/sodar-core | appalerts/tests/test_ui.py | .py | e878e66e30a16a87 | 7.07 | 13 |
"""UI views for the appalerts app"""
from django.contrib import messages
from django.http import HttpResponseRedirect
from django.shortcuts import redirect
from django.urls import reverse
from django.views.generic import ListView, View
from django.conf import settings
# Projectroles dependency
from projectroles.app_s... | bihealth/sodar-core | appalerts/views.py | .py | 5482327d538439c9 | 7.57 | 13 |
"""Ajax API views for the appalerts app"""
from rest_framework.response import Response
# Projectroles dependency
from projectroles.views_ajax import SODARBaseAjaxView
from appalerts.models import AppAlert
class AppAlertStatusAjaxView(SODARBaseAjaxView):
"""View to get app alert status for user"""
permiss... | bihealth/sodar-core | appalerts/views_ajax.py | .py | 5ebd801a3e6d6373 | 7.57 | 13 |
"""Code that represents a shell command."""
from __future__ import annotations
import typing as t
from aiida.orm import InstalledCode
__all__ = ('ShellCode',)
class ShellCode(InstalledCode):
"""Code that represents a shell command.
This code type is automatically generated by the :func:`~aiida_shell.engi... | aiidateam/aiida-shell | src/aiida_shell/data/code.py | .py | afe6f8e533bb8df4 | 7.62 | 16 |
"""Data plugin to store a reference to an entry point."""
from __future__ import annotations
import typing as t
from aiida.common.exceptions import EntryPointError
from aiida.common.lang import type_check
from aiida.common.log import AIIDA_LOGGER
from aiida.orm import Data
from aiida.plugins.entry_point import get_e... | aiidateam/aiida-shell | src/aiida_shell/data/entry_point.py | .py | 7eb8c83afc9f61ff | 7.62 | 16 |
"""Data plugin to store (almost) any Python object by pickling it."""
from __future__ import annotations
import importlib.metadata
import io
import typing as t
import dill
from aiida.common.log import AIIDA_LOGGER
from aiida.orm import SinglefileData
__all__ = ('PickledData',)
LOGGER = AIIDA_LOGGER.getChild('pickl... | aiidateam/aiida-shell | src/aiida_shell/data/pickled.py | .py | bff5a3cc4180958c | 7.62 | 16 |
"""Module with test fixtures."""
from __future__ import annotations
import collections
import pathlib
import shutil
import tempfile
import typing as t
import uuid
import pytest
from aiida.common import exceptions
from aiida.common.datastructures import CalcInfo
from aiida.common.folders import Folder
from aiida.comm... | aiidateam/aiida-shell | tests/conftest.py | .py | 6a4a31cc1e777ebe | 8.12 | 16 |
"""Tests for :mod:`aiida_shell.data.code`."""
import pytest
from aiida_shell.data.code import ShellCode
def test_constructor(generate_computer):
"""Test initializing an instance."""
code = ShellCode(
label='bash',
computer=generate_computer(),
filepath_executable='/bin/bash',
... | aiidateam/aiida-shell | tests/data/test_code.py | .py | cb3bb78f5e68463d | 8.12 | 16 |
"""Tests for the :mod:`aiida_shell.data.entry_point` module."""
import pytest
from aiida.orm import load_node
from aiida.plugins.entry_point import get_entry_point
from importlib_metadata import EntryPoint
from aiida_shell.data.entry_point import EntryPointData
InvalidEntryPoint = EntryPoint('b', 'a', group='c')
Inc... | aiidateam/aiida-shell | tests/data/test_entry_point.py | .py | 2a58afaa1b20c1e5 | 8.12 | 16 |
"""Tests for the :mod:`aiida_shell.data.pickled` module."""
import dill
import pytest
from aiida.orm import Node, load_node
from aiida_shell.data.pickled import PickledData
def test_constructor():
"""Test the constructor of :class:`~aiida_shell.data.pickled.PickledData`."""
node = PickledData(None)
asse... | aiidateam/aiida-shell | tests/data/test_pickled.py | .py | 2ec6d29d5d5204cb | 8.12 | 16 |
"""Tests for the :mod:`aiida_shell.parsers.shell` module."""
import copy
import pathlib
import pytest
from aiida.orm import FolderData, List, SinglefileData
from aiida_shell.calculations.shell import ShellJob
@pytest.fixture
def create_retrieved_temporary(tmp_path):
"""Create a temporary directory to serve as ... | aiidateam/aiida-shell | tests/parsers/test_shell.py | .py | 92a44c14bd3a8a54 | 8.12 | 16 |
"""Tests for the :mod:`aiida_shell.launch` module."""
import datetime
import json
import pathlib
import shutil
import pytest
from aiida.engine import WorkChain, run_get_node, workfunction
from aiida.orm import AbstractCode, Computer, Float, InstalledCode, Int, PortableCode, RemoteData, SinglefileData, Str
from aiida... | aiidateam/aiida-shell | tests/test_launch.py | .py | f6af56ba5f3bbcf2 | 8.12 | 16 |
from __future__ import annotations
import math
from collections.abc import Callable, Collection, Iterable
from typing import SupportsFloat, cast, overload
from scipy.interpolate import interp1d # type: ignore[import-untyped]
from . import Smoothing, Utils
class PlottingDependencyError(RuntimeError):
"""Raised... | LukasB97/ORCA | orca/Curve.py | .py | 910fc62269079f5d | 7.5 | 9 |
"""
Application Configuration (config.py)
Purpose:
Stores the configuration used by the application.
Classes:
BackupConfig
Settings for backup files.
AppConfig
Main application settings, including Google Cloud resources
and optional backup configuration.
"""
from dataclasses impo... | alphagov/govuk-knowledge-graph-gcp | docker/docdb-bq-loader/models/config.py | .py | c3588b2c613f8211 | 7.57 | 13 |
"""
MongoDB Document Cleaner (sanitizers.py)
This script prepares MongoDB data so it can be safely saved into databases
like BigQuery without causing errors. It does this by fixing inconsistent
fields and removing empty (None) values.
Functions:
1. serialize_and_strip_nulls() : Converts special MongoDB data types i... | alphagov/govuk-knowledge-graph-gcp | docker/docdb-bq-loader/utils/sanitizers.py | .py | 0561959d7798183d | 7.57 | 13 |
import os
import time
import sshconf
from threading import Thread
from cryptography.hazmat.primitives.asymmetric import rsa
from cryptography.hazmat.primitives import serialization
def generate_ssh_key_pair(identity_file):
"""
Generates an SSH key pair and writes them to the specified identity file.
:p... | osbuild/cloud-image-val | lib/ssh_lib.py | .py | 84a19eadf50eb3ce | 7.57 | 13 |
"""
Advanced CI test selection logic for cloud-image-val:
- If ONLY specific test methods in a cloud test file are changed, run only those methods for that cloud.
- If ONLY specific test methods in a generic test file are changed, run only those methods for all clouds.
- If any other files or logic are changed (includi... | osbuild/cloud-image-val | schutzbot/get_civ_config.py | .py | 6c064caa8a3c2458 | 7.57 | 13 |
import pytest
from schutzbot.get_civ_config import (
detect_if_only_specific_methods_changed,
CLOUD_TEST_FILES,
GENERIC_TEST_FILE
)
def mock_get_method_changes_for_file(test_file):
# Patch this function in tests
return {
CLOUD_TEST_FILES['aws']: {'test_aws_method1'},
CLOUD_TEST_FI... | osbuild/cloud-image-val | test/test_get_civ_config_logic.py | .py | db3f7465f8bf852f | 8.07 | 13 |
import json
import pytest
from packaging import version
import difflib
from lib import console_lib
from lib import test_lib
def get_offer_or_vm_name(instance_data_azure_web):
"""
Helper function to get offer from Azure metadata, with VM name as fallback.
Returns a tuple of (source_value, source_type) wh... | osbuild/cloud-image-val | test_suite/cloud/test_azure.py | .py | 0441fc39f918afc1 | 8.07 | 13 |
import json
import pytest
@pytest.fixture
def instance_data_oci_web(host):
"""
Fetch instance metadata from OCI IMDS (Instance Metadata Service).
"""
oci_metadata_url = 'http://169.254.169.254/opc/v2/instance/'
command_to_run = f'curl -s -H "Authorization: Bearer Oracle" "{oci_metadata_url}"'
... | osbuild/cloud-image-val | test_suite/cloud/test_oci.py | .py | 002a119d4dc3abc4 | 8.07 | 13 |
import os
import re
import time
import pytest
import requests
from packaging import version
from py.xml import html
from pytest_html import extras
from requests.adapters import HTTPAdapter
from requests.packages.urllib3.util.retry import Retry
from test_suite.generic import helpers
from lib import test_lib, aws_lib
... | osbuild/cloud-image-val | test_suite/conftest.py | .py | 40b99eff93f81c5e | 8.07 | 13 |
import os
import json
from lib import test_lib
INSTANCES_JSON_PATH = os.environ['CIV_INSTANCES_JSON']
def __get_instance_data_from_json(key_to_find, values_to_find, path=INSTANCES_JSON_PATH):
with open(path, 'r') as f:
instances_json_data = json.load(f)
for instance in instances_json_data.values():
... | osbuild/cloud-image-val | test_suite/generic/helpers.py | .py | 2c13cd7bb648ddca | 8.07 | 13 |
import pytest
from lib import test_lib
class TestsReboot:
hostname_before_reboot_file = '/var/hostname_before_reboot'
kmemleak_arg = 'kmemleak=on'
def setup_before_reboot(self, host):
with host.sudo():
host.run(f'hostname > {self.hostname_before_reboot_file}')
host.run_tes... | osbuild/cloud-image-val | test_suite/generic/test_reboot.py | .py | 0615cd4bac35fe05 | 8.07 | 13 |
import pytest
from lib import console_lib
from test_suite.rhel_devel import run_cloudx_components_testing
"""
CTC (Comprehensive Tests Cycle) refers to the RHEL testing phase
were we thoroughly test our components on a specified RHEL version.
There is also CTC2 which is another round in a later stage of SDLC.
"""
@p... | osbuild/cloud-image-val | test_suite/rhel_devel/ctc/test_ctc.py | .py | ef1fbab298421f86 | 7.07 | 13 |
"""Sphinx documentation configuration file."""
from datetime import datetime
import os
from pathlib import Path
from ansys_sphinx_theme import ansys_favicon, get_version_match
import jinja2
from tabulate import tabulate
import yaml
# Constants used for generating documentation
DOC_SOURCE_DIR = Path(__file__).parent.... | ansys/actions | doc/source/conf.py | .py | 5fb66b504f4d1d94 | 7.65 | 19 |
# Copyright (C) 2022 - 2026 Synopsys, Inc. and ANSYS, Inc. All rights reserved.
# SPDX-License-Identifier: MIT
#
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
# in the Software without restriction, includi... | ansys/actions | python-utils/parse_doc_conf.py | .py | 982991963b912566 | 7.65 | 19 |
# Copyright (C) 2022 - 2026 Synopsys, Inc. and ANSYS, Inc. All rights reserved.
# SPDX-License-Identifier: MIT
#
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
# in the Software without restriction, includi... | ansys/actions | python-utils/update_tag_references.py | .py | f435021cfd241e98 | 7.65 | 19 |
# Copyright (C) 2022 - 2026 Synopsys, Inc. and ANSYS, Inc. All rights reserved.
# SPDX-License-Identifier: MIT
#
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
# in the Software without restriction, includi... | ansys/actions | python-utils/versions.py | .py | 3d386b4133102ada | 7.65 | 19 |
# Copyright 2026 Google LLC
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, ... | datacommonsorg/import | pipeline/workflow/aggregation-helper/aggregation/bq_executor.py | .py | 6cafa111117a2327 | 7.45 | 7 |
# Copyright 2026 Google LLC
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, ... | datacommonsorg/import | pipeline/workflow/aggregation-helper/aggregation/deleter.py | .py | d35b9f745e828a9d | 7.45 | 7 |
# Copyright 2026 Google LLC
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, ... | datacommonsorg/import | pipeline/workflow/aggregation-helper/aggregation/e2e_tests/base.py | .py | 202c910d60d6611c | 7.95 | 7 |
# Copyright 2026 Google LLC
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, ... | datacommonsorg/import | pipeline/workflow/aggregation-helper/aggregation/e2e_tests/deletions_test.py | .py | 1e767e8a26498f14 | 7.95 | 7 |
# Copyright 2026 Google LLC
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, ... | datacommonsorg/import | pipeline/workflow/aggregation-helper/aggregation/e2e_tests/embedding_generator_test.py | .py | b5225f9f567ee06c | 7.95 | 7 |
# Copyright 2026 Google LLC
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, ... | datacommonsorg/import | pipeline/workflow/aggregation-helper/aggregation/e2e_tests/provenance_scoping_test.py | .py | 7ee27c226ac2c1cf | 7.95 | 7 |
#!/usr/bin/env python3
# Copyright 2023 Canonical Ltd.
# See LICENSE file for licensing details.
"""Structured configuration for the Kafka charm."""
import logging
import re
from enum import Enum
from typing import Literal
from charms.data_platform_libs.v0.data_models import BaseConfigModel
from pydantic import Fiel... | canonical/kafka-operator | common/single_kernel_kafka/core/structured_config.py | .py | 5cbac23b86afe008 | 7.54 | 11 |
#!/usr/bin/env python3
# Copyright 2024 Canonical Ltd.
# See LICENSE file for licensing details.
"""Event handlers for Juju Actions."""
import logging
from typing import TYPE_CHECKING
from ops.charm import ActionEvent
from ops.framework import Object
if TYPE_CHECKING:
from ..core.models import KafkaCharmBase as... | canonical/kafka-operator | common/single_kernel_kafka/events/actions.py | .py | c159b503c108fad2 | 7.54 | 11 |
#!/usr/bin/env python3
# Copyright 2024 Canonical Ltd.
# See LICENSE file for licensing details.
"""Balancer role core charm logic."""
import logging
from subprocess import CalledProcessError
from typing import TYPE_CHECKING, Literal
from charms.data_platform_libs.v0.data_interfaces import RelationEvent
from ops imp... | canonical/kafka-operator | common/single_kernel_kafka/events/balancer.py | .py | cd536a00ca513e3c | 7.54 | 11 |
#!/usr/bin/env python3
# Copyright 2025 Canonical Ltd.
# See LICENSE file for licensing details.
"""Event Handler for Kafka Connect related events."""
import logging
from typing import TYPE_CHECKING
from charms.data_platform_libs.v0.data_interfaces import PLUGIN_URL_NOT_REQUIRED
from ops.charm import (
ConfigCha... | canonical/kafka-operator | common/single_kernel_kafka/events/connect/base.py | .py | a8bae72031fd8f3b | 7.54 | 11 |
#!/usr/bin/env python3
# Copyright 2025 Canonical Ltd.
# See LICENSE file for licensing details.
"""KafkaHandler class and methods."""
import logging
from typing import TYPE_CHECKING
from charms.data_platform_libs.v0.data_interfaces import (
KafkaRequirerEventHandlers,
)
from ops.charm import RelationBrokenEvent... | canonical/kafka-operator | common/single_kernel_kafka/events/connect/kafka.py | .py | bacdb13d1ed4a523 | 7.54 | 11 |
#!/usr/bin/env python3
# Copyright 2025 Canonical Ltd.
# See LICENSE file for licensing details.
"""Event Handler for Connect Client Provider events."""
import logging
from typing import TYPE_CHECKING
from charms.data_platform_libs.v0.data_interfaces import (
PLUGIN_URL_NOT_REQUIRED,
IntegrationRequestedEven... | canonical/kafka-operator | common/single_kernel_kafka/events/connect/provider.py | .py | 077e36e137e3a566 | 7.54 | 11 |
#!/usr/bin/env python3
# Copyright 2025 Canonical Ltd.
# See LICENSE file for licensing details.
"""TLSHandler class and methods."""
import json
import logging
from typing import TYPE_CHECKING
from charms.tls_certificates_interface.v3.tls_certificates import (
CertificateAvailableEvent,
TLSCertificatesRequir... | canonical/kafka-operator | common/single_kernel_kafka/events/connect/tls.py | .py | 527af445f9073122 | 7.54 | 11 |
#!/usr/bin/env python3
# Copyright 2025 Canonical Ltd.
# See LICENSE file for licensing details.
"""Event Handler for user-defined secret events.
User management on the Kafka Connect REST API could be done by defining secrets
and granting their access to the charm.
The flow for defining secrets and granting access t... | canonical/kafka-operator | common/single_kernel_kafka/events/connect/user_secrets.py | .py | c28276a8508c1cad | 7.54 | 11 |
#!/usr/bin/env python3
# Copyright 2024 Canonical Ltd.
# See LICENSE file for licensing details.
"""Handler for controller specific logic."""
import logging
from typing import TYPE_CHECKING
from ops import (
LeaderElectedEvent,
Object,
PebbleReadyEvent,
RelationDepartedEvent,
StartEvent,
Upda... | canonical/kafka-operator | common/single_kernel_kafka/events/controller.py | .py | 2a68bafc7eb476d8 | 7.54 | 11 |
#!/usr/bin/env python3
# Copyright 2024 Canonical Ltd.
# See LICENSE file for licensing details.
"""Manager for handling Kafka OAuth configuration."""
import logging
from typing import TYPE_CHECKING
from charms.hydra.v0.oauth import ClientConfig, OAuthRequirer
from ops.framework import EventBase, Object
from ..core... | canonical/kafka-operator | common/single_kernel_kafka/events/oauth.py | .py | 81e96a8400c2fa75 | 7.54 | 11 |
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