text stringlengths 185 73.3k | repo stringlengths 7 100 | path stringlengths 4 146 | language stringclasses 7
values | hash stringlengths 16 16 | score float64 7 8.5 | stars int64 0 237k |
|---|---|---|---|---|---|---|
#!/usr/bin/env python3
# Copyright 2024 Canonical Ltd.
# See LICENSE file for licensing details.
"""KafkaProvider class and methods."""
import json
import logging
from typing import TYPE_CHECKING
from charms.data_platform_libs.v0.data_interfaces import (
PROV_SECRET_PREFIX,
REQ_SECRET_FIELDS,
CachedSecre... | canonical/kafka-operator | common/single_kernel_kafka/events/peer_cluster.py | .py | 3cdea2bfe3206b5c | 7.54 | 11 |
#!/usr/bin/env python3
# Copyright 2023 Canonical Ltd.
# See LICENSE file for licensing details.
"""KafkaProvider class and methods."""
import logging
import subprocess # nosec B404
from typing import TYPE_CHECKING
from charms.data_platform_libs.v1.data_interfaces import (
KafkaRequestModel,
MtlsCertUpdated... | canonical/kafka-operator | common/single_kernel_kafka/events/provider.py | .py | e2f77f162844bdbc | 7.54 | 11 |
# Copyright 2025 Canonical Ltd.
# See LICENSE file for licensing details.
"""Manager for handling Apache Kafka in-place upgrades."""
import abc
import dataclasses
import logging
import time
from typing import TYPE_CHECKING
import charm_refresh
from lightkube.core.client import Client
from lightkube.core.exceptions i... | canonical/kafka-operator | common/single_kernel_kafka/events/refresh.py | .py | ecdeabb637f33bb8 | 7.54 | 11 |
#!/usr/bin/env python3
# Copyright 2025 Canonical Ltd.
# See LICENSE file for licensing details.
"""Event Handler for user-defined secret events.
Internal user management could be done by defining secrets
and granting their access to the charm.
The flow for defining secrets and granting access to the charm would be ... | canonical/kafka-operator | common/single_kernel_kafka/events/secrets.py | .py | 450dc16461613f1b | 7.54 | 11 |
#!/usr/bin/env python3
# Copyright 2023 Canonical Ltd.
# See LICENSE file for licensing details.
"""Handler for TLS/mTLS events."""
import base64
import copy
import json
import logging
import re
from typing import TYPE_CHECKING
from charms.certificate_transfer_interface.v1.certificate_transfer import (
Certifica... | canonical/kafka-operator | common/single_kernel_kafka/events/tls.py | .py | f6a8dd1f6b86703a | 7.54 | 11 |
#!/usr/bin/env python3
# Copyright 2023 Canonical Ltd.
# See LICENSE file for licensing details.
"""Manager for handling Kafka machine health."""
import json
import logging
import subprocess
from statistics import mean
from typing import TYPE_CHECKING
from ops.framework import Object
from .core.literals import JVM_... | canonical/kafka-operator | common/single_kernel_kafka/health.py | .py | 19050e220ae60352 | 7.54 | 11 |
#!/usr/bin/env python3
# Copyright 2023 Canonical Ltd.
# See LICENSE file for licensing details.
"""KafkaClient class library for basic client connections to a Kafka Charm cluster.
`KafkaClient` provides an interface from which to make generic client connections
to a running Kafka Charm cluster. This can be as an adm... | canonical/kafka-operator | common/single_kernel_kafka/lib/v0/client.py | .py | 68370fd3b756c70b | 7.54 | 11 |
#!/usr/bin/env python3
# Copyright 2024 Canonical Ltd.
# See LICENSE file for licensing details.
"""Manager for handling Balancer."""
import json
import logging
import re
import time
from subprocess import CalledProcessError
from typing import TYPE_CHECKING, Any, cast
import requests
from ops.pebble import ExecError... | canonical/kafka-operator | common/single_kernel_kafka/managers/balancer.py | .py | 089304ba26ad073c | 7.54 | 11 |
#!/usr/bin/env python3
# Copyright 2025 Canonical Ltd.
# See LICENSE file for licensing details.
"""Manager for handling operations on Kafka Connect workers."""
import logging
import os
import re
import tempfile
import warnings
from pathlib import Path
from subprocess import CalledProcessError
from typing import Patt... | canonical/kafka-operator | common/single_kernel_kafka/managers/connect.py | .py | d0f06ef79313f964 | 7.54 | 11 |
#!/usr/bin/env python3
# Copyright 2025 Canonical Ltd.
# See LICENSE file for licensing details.
"""Manager for handling Kafka Connect configuration."""
import inspect
import logging
import os
from typing import cast
from ..core.connect_models import ConnectContext
from ..core.literals import (
JMX_EXPORTER_PORT... | canonical/kafka-operator | common/single_kernel_kafka/managers/connect_config.py | .py | cb80f6c84b240be0 | 7.54 | 11 |
#!/usr/bin/env python3
# Copyright 2024 Canonical Ltd.
# See LICENSE file for licensing details.
"""Manager for handling KRaft Controller."""
import logging
import os
from subprocess import CalledProcessError
from ops.pebble import ExecError
from tenacity import retry, stop_after_attempt, wait_fixed
from ..core.clu... | canonical/kafka-operator | common/single_kernel_kafka/managers/controller.py | .py | ee6f552c63ad7277 | 7.54 | 11 |
#!/usr/bin/env python3
# Copyright 2024 Canonical Ltd.
# See LICENSE file for licensing details.
"""Manager for handling Kafka Kubernetes resources for a single Kafka pod."""
import json
import logging
import math
import time
from functools import cache
from lightkube.core.client import Client
from lightkube.core.ex... | canonical/kafka-operator | common/single_kernel_kafka/managers/k8s.py | .py | 9af2f21ebf41c610 | 7.54 | 11 |
#!/usr/bin/env python3
# Copyright 2025 Canonical Ltd.
# See LICENSE file for licensing details.
"""Manager for handling Apache Kafka SSL principal mappings."""
import logging
import re
logger = logging.getLogger(__name__)
DEFAULT_SSL_PRINCIPAL_MAPPING_RULES = "DEFAULT"
class NoMatchingRuleError(Exception):
"... | canonical/kafka-operator | common/single_kernel_kafka/managers/ssl_principal_mapper.py | .py | ce16bd30ff180cd1 | 7.54 | 11 |
# Copyright 2023 Canonical Ltd.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, s... | canonical/kafka-operator | connect_k8s/lib/charms/data_platform_libs/v0/data_models.py | .py | 680d588e176ce6b7 | 7.54 | 11 |
# Copyright (c) University College London Hospitals NHS Foundation Trust
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless req... | SAFEHR-data/PIXL | cli/src/pixl_cli/_config.py | .py | 6a227c4d7d9f1513 | 7.48 | 8 |
# Copyright (c) University College London Hospitals NHS Foundation Trust
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless req... | SAFEHR-data/PIXL | cli/src/pixl_cli/_database.py | .py | e6a0a94b406fb5ac | 7.48 | 8 |
# Copyright (c) University College London Hospitals NHS Foundation Trust
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless req... | SAFEHR-data/PIXL | cli/src/pixl_cli/_docker_commands.py | .py | e69095d371c1a9b0 | 7.48 | 8 |
# Copyright (c) University College London Hospitals NHS Foundation Trust
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless req... | SAFEHR-data/PIXL | cli/src/pixl_cli/_io.py | .py | e6b4338724c1b311 | 7.48 | 8 |
# Copyright (c) University College London Hospitals NHS Foundation Trust
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless req... | SAFEHR-data/PIXL | cli/src/pixl_cli/_message_processing.py | .py | 9fedccdc0aa81f73 | 7.48 | 8 |
# Copyright (c) University College London Hospitals NHS Foundation Trust
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless req... | SAFEHR-data/PIXL | cli/src/pixl_cli/main.py | .py | a845aed8958ffd42 | 7.48 | 8 |
# Copyright (c) University College London Hospitals NHS Foundation Trust
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless req... | SAFEHR-data/PIXL | cli/tests/conftest.py | .py | c42f70ca68a58fe8 | 7.98 | 8 |
# Copyright (c) University College London Hospitals NHS Foundation Trust
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless req... | SAFEHR-data/PIXL | cli/tests/test_check_env.py | .py | 8fafa407f8c37d2f | 7.98 | 8 |
# Copyright (c) University College London Hospitals NHS Foundation Trust
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless req... | SAFEHR-data/PIXL | cli/tests/test_database_cli_interaction.py | .py | 1068516eeb6950b0 | 7.98 | 8 |
# Copyright (c) University College London Hospitals NHS Foundation Trust
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless req... | SAFEHR-data/PIXL | cli/tests/test_docker_commands.py | .py | 28313b1aa586680e | 7.98 | 8 |
# Copyright (c) University College London Hospitals NHS Foundation Trust
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless req... | SAFEHR-data/PIXL | cli/tests/test_io.py | .py | 8331979160ecd24d | 7.98 | 8 |
# Copyright (c) 2022 University College London Hospitals NHS Foundation Trust
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unles... | SAFEHR-data/PIXL | hasher/src/hasher/hashing.py | .py | 28adcdbabedfb36a | 7.48 | 8 |
# Copyright (c) 2022 University College London Hospitals NHS Foundation Trust
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unles... | SAFEHR-data/PIXL | hasher/tests/conftest.py | .py | 7fdf4d1bb447d4c9 | 7.98 | 8 |
# Copyright (c) 2022 University College London Hospitals NHS Foundation Trust
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unles... | SAFEHR-data/PIXL | orthanc/orthanc-raw/plugin/pixl.py | .py | a5124fce3e36141a | 7.48 | 8 |
# Copyright (c) University College London Hospitals NHS Foundation Trust
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless req... | SAFEHR-data/PIXL | pixl_core/src/core/db/models.py | .py | f70fd6ed168208e2 | 7.48 | 8 |
# Copyright (c) University College London Hospitals NHS Foundation Trust
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless req... | SAFEHR-data/PIXL | pixl_core/src/core/db/queries.py | .py | 413a4bae7efda325 | 7.48 | 8 |
# Copyright (c) 2022 University College London Hospitals NHS Foundation Trust
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unles... | SAFEHR-data/PIXL | pixl_core/src/core/dicom_tags.py | .py | f14020baaf29cb4d | 7.48 | 8 |
# Copyright (c) University College London Hospitals NHS Foundation Trust
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless req... | SAFEHR-data/PIXL | pixl_core/src/core/exports.py | .py | 3965df8c9d2a011e | 7.48 | 8 |
# Copyright (c) University College London Hospitals NHS Foundation Trust
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless req... | SAFEHR-data/PIXL | pixl_core/src/core/logging.py | .py | 6584ee5fd78b2453 | 7.48 | 8 |
# Copyright (c) University College London Hospitals NHS Foundation Trust
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless req... | SAFEHR-data/PIXL | pixl_core/src/core/patient_queue/_base.py | .py | 3ab49d6435ba4bb3 | 7.48 | 8 |
# Copyright (c) 2022 University College London Hospitals NHS Foundation Trust
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless r... | SAFEHR-data/PIXL | pixl_core/src/core/patient_queue/message.py | .py | 63d1a0d6d3332999 | 7.48 | 8 |
# Copyright (c) 2022 University College London Hospitals NHS Foundation Trust
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unles... | SAFEHR-data/PIXL | pixl_core/src/core/patient_queue/producer.py | .py | f4224eb9b193de09 | 7.48 | 8 |
# Copyright (c) 2022 University College London Hospitals NHS Foundation Trust
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unles... | SAFEHR-data/PIXL | pixl_core/src/core/patient_queue/subscriber.py | .py | 52f322e47ab00567 | 7.48 | 8 |
# Copyright (c) University College London Hospitals NHS Foundation Trust
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless req... | SAFEHR-data/PIXL | pixl_core/src/core/project_config/image_operations.py | .py | 54eb5c152880b1ea | 7.48 | 8 |
# Copyright (c) University College London Hospitals NHS Foundation Trust
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless req... | SAFEHR-data/PIXL | pixl_core/src/core/project_config/pixl_config_model.py | .py | 778c41166c2fc839 | 7.48 | 8 |
# Copyright (c) 2022 University College London Hospitals NHS Foundation Trust
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unles... | SAFEHR-data/PIXL | pixl_core/src/core/project_config/secrets.py | .py | fc67f6c16eb39351 | 7.48 | 8 |
# Copyright (c) University College London Hospitals NHS Foundation Trust
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless req... | SAFEHR-data/PIXL | pixl_core/src/core/project_config/tag_operations.py | .py | 31af3aef59c6e4d1 | 7.48 | 8 |
# Copyright (c) University College London Hospitals NHS Foundation Trust
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless req... | SAFEHR-data/PIXL | pixl_core/src/core/telemetry.py | .py | 9261aa9d1b5f6e69 | 7.48 | 8 |
from __future__ import annotations
import shutil
from pathlib import Path
from typing import TYPE_CHECKING
from uuid import UUID
from lamin_utils import logger
from ._connect_instance import _connect_instance, get_owner_name_from_identifier
from .core._aws_options import HOSTED_BUCKETS
from .core._settings import se... | laminlabs/lamindb-setup | lamindb_setup/_delete.py | .py | af04f7bbfee75d09 | 7.48 | 8 |
from __future__ import annotations
import os
from django.db import connection
from lamin_utils import logger
from packaging import version
from ._check_setup import _check_instance_setup, disable_auto_connect
from .core._settings import settings
from .core.django import setup_django
# for the django-based synching... | laminlabs/lamindb-setup | lamindb_setup/_migrate.py | .py | 852fb0811da09f30 | 7.48 | 8 |
from __future__ import annotations
import secrets
import string
from typing import TYPE_CHECKING
from lamin_utils import logger
from .core._settings import settings
from .core.django import setup_django
if TYPE_CHECKING:
from uuid import UUID
def _base62(n_char: int) -> str:
alphabet = string.digits + str... | laminlabs/lamindb-setup | lamindb_setup/_register_instance.py | .py | 03f5fd928167e1f1 | 7.48 | 8 |
"""Recovery from an asyncio write-error loop that stalls fsspec transfers.
Symptom
-------
A cloud transfer stops making progress and asyncio logs, endlessly and at a rate of
roughly 100k per second, one of::
Exception in callback _SelectorSocketTransport._write_send()
AssertionError: Data should not be empty... | laminlabs/lamindb-setup | lamindb_setup/core/_asyncio_write_spin.py | .py | 61f7d201e74bf23a | 7.48 | 8 |
from __future__ import annotations
import logging
import os
from typing import TYPE_CHECKING, Any
from dotenv import dotenv_values
from lamin_utils import logger
from ._settings_store import system_settings_file
if TYPE_CHECKING:
from aiobotocore.session import AioSession
from upath import UPath
HOSTED_REG... | laminlabs/lamindb-setup | lamindb_setup/core/_aws_options.py | .py | 812bac64af71bdf7 | 7.48 | 8 |
from __future__ import annotations
from dataclasses import dataclass
from typing import TYPE_CHECKING
if TYPE_CHECKING:
from uuid import UUID
class user_description:
email = """User email."""
password = """API key or legacy password."""
uid = """Universal user ID."""
handle = "Unique handle."
... | laminlabs/lamindb-setup | lamindb_setup/core/_settings_user.py | .py | d6df8f0c14254a25 | 7.48 | 8 |
"""The `CanonicalSuffix` class."""
# the main class of this module is re-exported and documented in lamindb.base.types
# the location of canonical_suffix.py in lamindb_setup is for internal use
# or for developers who want to avoid importing lamindb
# this is the same rationale as for the upath.py module in lamindb_set... | laminlabs/lamindb-setup | lamindb_setup/core/canonical_suffix.py | .py | ddced197286d979d | 7.48 | 8 |
from __future__ import annotations
from datetime import datetime, timezone
from functools import wraps
from typing import TYPE_CHECKING
from lamin_utils import logger
from lamindb_setup.errors import InstanceLockedException
if TYPE_CHECKING:
from collections.abc import Callable
from typing import ParamSpec,... | laminlabs/lamindb-setup | lamindb_setup/core/cloud_sqlite_locker.py | .py | 7cfa42db470abe6f | 7.48 | 8 |
"""Hashing.
.. autosummary::
:toctree: .
hash_set
hash_file
"""
from __future__ import annotations
import base64
import hashlib
import json
from concurrent.futures import ThreadPoolExecutor
from typing import TYPE_CHECKING
import psutil
HASH_LENGTH = 22
if TYPE_CHECKING:
from collections.abc import... | laminlabs/lamindb-setup | lamindb_setup/core/hashing.py | .py | 74885f22e9d080f2 | 7.48 | 8 |
import importlib.metadata
import logging
import os
import stat
import textwrap
from concurrent.futures import ThreadPoolExecutor, as_completed
from pathlib import Path
from subprocess import Popen
from git import Repo
from tomlkit import parse
from blueapi.config import FORBIDDEN_OWN_REMOTE_URL, ScratchConfig
from bl... | DiamondLightSource/blueapi | src/blueapi/cli/scratch.py | .py | 4eee78cfdfd534e3 | 7.57 | 13 |
import inspect
from collections.abc import Callable, Generator, Mapping
from typing import (
Any,
Protocol,
get_args,
get_origin,
get_type_hints,
runtime_checkable,
)
from bluesky.protocols import (
Checkable,
Configurable,
Flyable,
Movable,
Pausable,
Readable,
Stage... | DiamondLightSource/blueapi | src/blueapi/core/bluesky_types.py | .py | 3157861dc9d6eb1c | 7.57 | 13 |
import itertools
import logging
from abc import ABC, abstractmethod
from collections.abc import Callable
from typing import Generic, TypeVar
#: Event type
E = TypeVar("E")
#: Subscription token type
S = TypeVar("S")
LOGGER = logging.getLogger(__name__)
class EventStream(ABC, Generic[E, S]):
"""
Generic rep... | DiamondLightSource/blueapi | src/blueapi/core/event.py | .py | e15bc3c358091849 | 7.57 | 13 |
import enum
import logging
import os
from contextlib import contextmanager
from copy import copy
import click
from graypy import GELFTCPHandler
from blueapi.config import LoggingConfig
class InstrumentTagFilter(logging.Filter):
"""Filter to attach instrument and beamline attributes to LogRecords.
Attaches ... | DiamondLightSource/blueapi | src/blueapi/log.py | .py | f6446a2caf3123d0 | 7.57 | 13 |
import logging
from collections.abc import Mapping
from dataclasses import dataclass
from functools import cache
from multiprocessing.connection import Connection
from typing import Any
from bluesky.callbacks.tiled_writer import TiledWriter
from bluesky_stomp.messaging import StompClient
from bluesky_stomp.models impo... | DiamondLightSource/blueapi | src/blueapi/service/interface.py | .py | 7f5098f0ab3aadd8 | 7.57 | 13 |
"""
The application level sub-protocol used to communicate between the server and
client when running plans via websockets
"""
# Client to server
# * Submit task
# * Pause
# * Resume
# * Abort
#
# Server to client
# * Plan not found
# * Args not valid
# * Server busy
# * Event update
from typing import Annotated, Any... | DiamondLightSource/blueapi | src/blueapi/service/protocol.py | .py | b88704c059ee2176 | 7.57 | 13 |
import importlib
from collections.abc import Callable, Iterable
from types import ModuleType
from typing import Any
def load_module_all(mod: ModuleType) -> Iterable[Any]:
"""
If __export__ is defined for the module, try importing those functions as plans,
else load the global variables exported via the `_... | DiamondLightSource/blueapi | src/blueapi/utils/modules.py | .py | 438733cb5f36cabb | 7.57 | 13 |
import logging
from collections.abc import Mapping
from pathlib import Path
from textwrap import dedent
import httpx
from pydantic import Field, HttpUrl
from blueapi.utils import BlueapiBaseModel
LOGGER = logging.getLogger(__name__)
class DirectoryPath(BlueapiBaseModel):
"""
Directory location and associat... | DiamondLightSource/blueapi | src/blueapi/utils/numtracker.py | .py | a056cd34abae7225 | 7.57 | 13 |
from pathlib import Path
from event_model import RunStart, RunStop
from ophyd_async.core import PathInfo, PathProvider
class StartDocumentPathProvider(PathProvider):
"""A PathProvider that sources from metadata in a RunStart document.
This uses metadata from a RunStart document to determine file names and
... | DiamondLightSource/blueapi | src/blueapi/utils/path_provider.py | .py | a4c779ffa26f2466 | 7.57 | 13 |
import json
from typing import Any
from pydantic import BaseModel
from blueapi import utils
def serialize(obj: Any) -> Any:
"""
Pydantic-aware serialization routine that can also be
used on primitives. So serialize(4) is 4, but
serialize(<model>) is a dictionary.
Args:
obj: The object t... | DiamondLightSource/blueapi | src/blueapi/utils/serialization.py | .py | 94648bad42813be4 | 7.57 | 13 |
from collections.abc import Mapping
from enum import StrEnum
from typing import Any, Literal, Self
from bluesky._vendor.super_state_machine.extras import PropertyMachine, ProxyString
from bluesky.run_engine import RunEngineStateMachine
from pydantic import Field, PydanticSchemaGenerationError, TypeAdapter
from pydanti... | DiamondLightSource/blueapi | src/blueapi/worker/event.py | .py | d20e002dc02f8509 | 7.57 | 13 |
import logging
from collections.abc import Mapping
from typing import Any
from pydantic import BaseModel, Field, TypeAdapter
from blueapi.core import BlueskyContext
from blueapi.utils import BlueapiBaseModel
LOGGER = logging.getLogger(__name__)
class Task(BlueapiBaseModel):
"""
Task that will run a plan
... | DiamondLightSource/blueapi | src/blueapi/worker/task.py | .py | 3d0f0865196e1418 | 7.57 | 13 |
"""Documentation generation."""
from collections.abc import Iterator
from enum import StrEnum
class IterableStrEnum(StrEnum):
"""Polyfill that also introduces dict-like behavior.
Introduces constructors that return a ``Iterator`` object
either containing all items, only their names or their values.
... | bakdata/kpops | hooks/gen_docs/__init__.py | .py | 577f4f671f9737bb | 7.6 | 15 |
"""Generates pipeline definition examples from manually written building blocks."""
import sys
from pathlib import Path
from typing import NamedTuple, cast
import structlog
import yaml
from hooks import ROOT
from kpops.components.base_components.kafka_connector import KafkaConnector
from kpops.components.base_compon... | bakdata/kpops | hooks/gen_docs/gen_docs_components.py | .py | e11bbd158cde7863 | 7.6 | 15 |
"""Generates the documentation on KPOps environment variables."""
from __future__ import annotations
import csv
import shutil
from collections.abc import Callable
from contextlib import suppress
from dataclasses import dataclass
from pathlib import Path
from textwrap import fill
from typing import Any, Self
from pyd... | bakdata/kpops | hooks/gen_docs/gen_docs_env_vars.py | .py | 97d17be48ec508ad | 7.6 | 15 |
from typing import final
import structlog
from kpops.component_handlers.helm.helm import Helm
from kpops.component_handlers.helm.helm_diff import HelmDiff
@final
class DryRunHandler:
def __init__(self, helm: Helm, helm_diff: HelmDiff, namespace: str) -> None:
self._helm = helm
self._helm_diff = ... | bakdata/kpops | kpops/component_handlers/helm/dry_run_handler.py | .py | ab49602829f908bd | 7.6 | 15 |
from collections.abc import Iterable, Iterator
from typing import final
import structlog
from kpops.component_handlers.helm.model import HelmDiffConfig, HelmTemplate
from kpops.manifests.kubernetes import KubernetesManifest
from kpops.utils.dict_differ import Change, render_diff
log = structlog.get_logger("HelmDiff"... | bakdata/kpops | kpops/component_handlers/helm/helm_diff.py | .py | 44baad08f1793a29 | 7.6 | 15 |
from collections.abc import Iterator
from dataclasses import dataclass
from pathlib import Path
from typing import ClassVar
from pydantic import ConfigDict, Field
from typing_extensions import override
from kpops.component_handlers.helm.exception import ParseError
from kpops.manifests.kubernetes import KubernetesMani... | bakdata/kpops | kpops/component_handlers/helm/model.py | .py | ea8cdc571ff9a661 | 7.6 | 15 |
from kpops.component_handlers.kubernetes.utils import trim
from kpops.manifests.kubernetes import K8S_LABEL_MAX_LEN
RELEASE_NAME_MAX_LEN = 53
def create_helm_release_name(name: str, suffix: str = "") -> str:
"""Shortens the long Helm release name.
:param name: The Helm release name to be shortened.
:par... | bakdata/kpops | kpops/component_handlers/helm/utils.py | .py | 405d2de84b63d959 | 7.6 | 15 |
from __future__ import annotations
import json
from abc import ABC
from collections.abc import Generator, Hashable, Sequence
from dataclasses import asdict
from functools import cached_property
from pathlib import Path
from typing import Any, ClassVar, Self, TypeVar, cast
import pydantic
import structlog
from pydanti... | bakdata/kpops | kpops/components/base_components/base_defaults_component.py | .py | 11c8c58dde834cef | 7.6 | 15 |
from __future__ import annotations
from functools import cached_property
from typing import Annotated, Any
import pydantic
import structlog
from pydantic import Field, computed_field
from typing_extensions import override
from kpops.component_handlers.helm.dry_run_handler import DryRunHandler
from kpops.component_ha... | bakdata/kpops | kpops/components/base_components/helm_app.py | .py | 48429e0153a71038 | 7.6 | 15 |
from __future__ import annotations
from abc import ABC
from typing import Any, NoReturn
import structlog
from pydantic import PrivateAttr, ValidationInfo, field_validator
from typing_extensions import override
from kpops.component_handlers import get_handlers
from kpops.component_handlers.kafka_connect.model import ... | bakdata/kpops | kpops/components/base_components/kafka_connector.py | .py | 41029dfa326df28b | 7.6 | 15 |
from __future__ import annotations
import re
from abc import ABC
from typing import ClassVar
import structlog
from pydantic import ConfigDict
from typing_extensions import override
from kpops.components.base_components.pipeline_component import PipelineComponent
from kpops.utils.pydantic import CamelCaseConfigModel,... | bakdata/kpops | kpops/components/base_components/kubernetes_app.py | .py | d8e68b83a6c100b3 | 7.6 | 15 |
from enum import StrEnum, auto
from typing import Any, ClassVar, NewType
from pydantic import ConfigDict, model_validator
from kpops.components.base_components.models import TopicName
from kpops.utils.pydantic import DescConfigModel
class InputTopicTypes(StrEnum):
"""Input topic types.
- INPUT: input topic... | bakdata/kpops | kpops/components/base_components/models/from_section.py | .py | 1f441a9b4db64dcc | 7.6 | 15 |
from __future__ import annotations
from typing import ClassVar
from pydantic import ConfigDict
from kpops.components.base_components.models import ModelName, ModelVersion, TopicName
from kpops.components.common.topic import KafkaTopic, TopicConfig
from kpops.utils.pydantic import DescConfigModel
class ToSection(De... | bakdata/kpops | kpops/components/base_components/models/to_section.py | .py | c3d1b2e839c6f38d | 7.6 | 15 |
"""End-to-end import benchmark: restore a clean database, then time an import.
Restores gbif_alert_bench from gbif_alert_bench_template before every run, so
each configuration starts from identical state, then runs import_observations
against the given archive and reports a stage breakdown parsed from the
command's ow... | riparias/gbif-alert | benchmarks/bench_e2e.py | .py | d34180ef5fe7615b | 7.54 | 11 |
"""Parse-only benchmark for the DwCA read path used by import_observations.
Not part of the test suite. Run the variants back to back, in one sitting, on an
idle machine. See README.md for methodology and recorded numbers.
Three measurement points:
# baseline: 0.16.4, row path
PYTHONPATH=. uv run --with "pyt... | riparias/gbif-alert | benchmarks/bench_parse.py | .py | e057c54595968b76 | 7.54 | 11 |
"""Build a smaller DwCA from a GBIF download, for benchmarking at a lower scale.
Truncates occurrence.txt to the first N data rows and filters verbatim.txt and
multimedia.txt down to the extension rows that reference those core ids, so all
three files shrink together. Everything else (meta.xml, metadata.xml, the
datas... | riparias/gbif-alert | benchmarks/make_subset.py | .py | ee92ac6561fbd7e7 | 7.54 | 11 |
"""Relabel a throwaway database's species so a given archive actually imports.
Why this exists: the most realistic thing to benchmark an import against is a
clone of a real database - real observation volume, real users, real alerts,
real unseen records. But a real database's species carry the taxon keys of
whatever c... | riparias/gbif-alert | benchmarks/remap_species_to_archive.py | .py | c2b519e2e1927bea | 7.04 | 11 |
import os
import subprocess
from pathlib import Path
import pytest
# pytest-playwright installs an asyncio event loop at session scope.
# Django detects it and refuses synchronous DB operations by default.
# This flag disables that guard - safe in a test context.
os.environ["DJANGO_ALLOW_ASYNC_UNSAFE"] = "1"
# Tests... | riparias/gbif-alert | conftest.py | .py | 98a78b2c15031d7a | 8.04 | 11 |
from django.conf import settings
from django.contrib.auth.admin import UserAdmin as DjangoUserAdmin
from django.contrib.gis import admin
from django.utils.html import format_html
from import_export import resources # type: ignore
from import_export.admin import ImportExportModelAdmin # type: ignore
from modeltranslat... | riparias/gbif-alert | dashboard/admin.py | .py | 567d4b6460eca1ef | 7.54 | 11 |
"""Authentication helpers for the v2 API."""
from django.http import HttpRequest
from django.utils import timezone
from ninja.errors import HttpError
from ninja.security import HttpBearer
from dashboard.models import ApiToken
class ApiTokenAuth(HttpBearer):
"""Authenticate a request from a personal access token ... | riparias/gbif-alert | dashboard/api_v2_auth.py | .py | a40869e5954bf5ca | 7.54 | 11 |
from django import forms
from django.conf import settings
from django.contrib.auth import get_user_model
from django.contrib.auth.forms import UserCreationForm
from django.utils.translation import gettext_lazy as _
from dashboard.models import ObservationComment
def _enabled_languages_as_tuple():
"""
Return ... | riparias/gbif-alert | dashboard/forms.py | .py | e8ded8773e51f089 | 7.54 | 11 |
"""Helpers to map legacy GBIF backbone taxon keys to COL XR taxon keys.
Isolated from the management command so the HTTP call is easy to mock in tests.
"""
import dataclasses
import requests
from django.conf import settings
COL_XR_CHECKLIST_KEY = settings.GBIF_COL_XR_CHECKLIST_KEY
_GBIF_MATCH_URL = "https://api.gbif... | riparias/gbif-alert | dashboard/gbif_taxonomy.py | .py | dc78a84900456494 | 7.54 | 11 |
"""Import-set maintenance-mode tagging and self-heal.
`import_observations` puts the site in maintenance mode for the whole import run:
it replaces all observations and rebuilds the `hexa_*` materialized views inside
one transaction. (The non-concurrent MV rebuild in particular holds an ACCESS
EXCLUSIVE lock that woul... | riparias/gbif-alert | dashboard/maintenance.py | .py | 0669d5bf7c7a0667 | 7.54 | 11 |
from django.contrib.gis.gdal.feature import Feature
from django.contrib.gis.gdal.geometries import MultiPolygon, OGRGeometry
import requests
from dashboard.models import Dataset
# Enough for a single registry lookup, short enough that an unresponsive GBIF
# API cannot stall a whole import.
_GBIF_API_TIMEOUT_SECONDS ... | riparias/gbif-alert | dashboard/management/commands/helpers.py | .py | ab833e7fe29e5e5b | 7.54 | 11 |
"""Converts clustered data into pairwise format for CROW1.
The script can be used with a CSV file or a directory of CSV files
containing data in a format suitable for the cluster version of CROW1.
The data will need to contain the following columns:
- Cluster ID/number
The unique identifier for each cluster, i.e.... | ONSdigital/ons-crow | version1_tkinter/utils/cluster_to_pairwise.py | .py | 9f4a49be1d7359f9 | 7.56 | 12 |
import hashlib
class AssetFingerprinter(object):
"""
Get a unique hash for an asset file, so that it doesn't stay cached
when it changes
Usage:
in the application
template_data.asset_fingerprinter = AssetFingerprinter()
where template data is how you pass variables to every ... | alphagov/emergency-alerts-admin | app/asset_fingerprinter.py | .py | 3e5b25b7005b3c64 | 7.5 | 9 |
#!/usr/bin/env python
import csv
import pickle
import sys
from math import isclose
from pathlib import Path
import geojson
from emergency_alerts_utils.formatters import formatted_list
from emergency_alerts_utils.polygons import Polygons
from populations import (
CITY_OF_LONDON,
MEDIAN_AGE_UK,
estimate_num... | alphagov/emergency-alerts-admin | app/broadcast_areas/create-broadcast-areas-db.py | .py | 354bdcf5d4d025a8 | 7.5 | 9 |
#!/usr/bin/env python
import os
from pathlib import Path
import geojson
from emergency_alerts_utils.formatters import formatted_list
from emergency_alerts_utils.polygons import Polygons
from repo import BroadcastAreasRepository
from rtreelib import RTree
from shapely import wkt
from shapely.geometry import MultiPolyg... | alphagov/emergency-alerts-admin | app/broadcast_areas/create-postcode-areas-db.py | .py | 21cb1bf74fb3d24b | 7.5 | 9 |
#!/usr/bin/env python
import json
import sys
from math import isclose
from pathlib import Path
import geojson
from emergency_alerts_utils.formatters import formatted_list
from emergency_alerts_utils.polygons import Polygons
from repo import BroadcastAreasRepository
from rtreelib import RTree
from shapely import wkt
f... | alphagov/emergency-alerts-admin | app/broadcast_areas/create-reppir-areas-db.py | .py | 62d1bcfffec302a6 | 7.5 | 9 |
import inspect
import json
import os
from datetime import datetime, timezone
from io import BytesIO
import boto3
from emergency_alerts_utils.clients.zendesk.zendesk_client import (
EASSupportTicket,
)
from emergency_alerts_utils.template import BroadcastMessageTemplate
from emergency_alerts_utils.xml.common import... | alphagov/emergency-alerts-api | app/broadcast_message/utils.py | .py | ac9622db93505696 | 7.5 | 9 |
class ClientException(Exception):
"""
Base Exceptions for sending notifications that fail
"""
pass
class Client(object):
"""
Base client for sending notifications.
"""
pass
STATISTICS_REQUESTED = "requested"
STATISTICS_DELIVERED = "delivered"
STATISTICS_FAILURE = "failure"
class ... | alphagov/emergency-alerts-api | app/clients/__init__.py | .py | 4e4a288c68c99ea1 | 7.5 | 9 |
import logging
import boto3
import botocore.exceptions
from flask import current_app
from app.errors import InvalidRequest
logger = logging.getLogger(__name__)
class EmailClient:
def __init__(self, client=None, sender=None):
endpoint = current_app.config["SES_ENDPOINT"]
from_address = current_... | alphagov/emergency-alerts-api | app/clients/email_client.py | .py | 1c7870fd06500e0c | 7.5 | 9 |
import functools
import itertools
import os
import uuid
import click
import flask
from flask import current_app, json
from sqlalchemy.exc import IntegrityError
from app import db
from app.dao.broadcast_message_dao import dao_purge_old_broadcast_messages
from app.dao.invited_user_dao import delete_invitations_sent_by_... | alphagov/emergency-alerts-api | app/commands.py | .py | bb2e671b32babce0 | 7.5 | 9 |
from datetime import datetime, timezone
from emergency_alerts_utils.admin_action import (
ADMIN_ELEVATE_USER,
ADMIN_ELEVATION_ACTION_TIMEOUT,
ADMIN_STATUS_INVALIDATED,
ADMIN_STATUS_PENDING,
)
from app.dao.dao_utils import autocommit
from app.models import AdminAction
def dao_get_pending_valid_admin_... | alphagov/emergency-alerts-api | app/dao/admin_action_dao.py | .py | 293ae730ae201df2 | 7.5 | 9 |
import uuid
from datetime import datetime, timedelta, timezone
from sqlalchemy import func, or_
from app import db
from app.dao.dao_utils import autocommit, version_class
from app.models import ApiKey
@autocommit
@version_class(ApiKey)
def save_model_api_key(api_key):
if not api_key.id:
api_key.id = uui... | alphagov/emergency-alerts-api | app/dao/api_key_dao.py | .py | fae43e0602ecd681 | 7.5 | 9 |
import uuid
from datetime import datetime, timezone
from sqlalchemy import asc, desc
from sqlalchemy.orm import aliased
from app import db
from app.dao.dao_utils import autocommit
from app.models import BroadcastMessageEditReasons, User
def dao_get_broadcast_message_edit_reasons(service_id, broadcast_message_id):
... | alphagov/emergency-alerts-api | app/dao/broadcast_message_edit_reasons.py | .py | 2f30010fc8d6b188 | 7.5 | 9 |
import uuid
from datetime import datetime, timezone
from sqlalchemy import desc
from sqlalchemy.orm import aliased
from app import db
from app.dao.dao_utils import autocommit
from app.models import BroadcastMessageHistory, User
def dao_get_broadcast_message_versions(service_id, broadcast_message_id):
UserCreate... | alphagov/emergency-alerts-api | app/dao/broadcast_message_history_dao.py | .py | 3b31bb3c8e244d28 | 7.5 | 9 |
Subsets and Splits
No community queries yet
The top public SQL queries from the community will appear here once available.