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# Copyright Amazon.com, Inc. or its affiliates. All Rights Reserved.
from .default_maya_handler import DefaultMayaHandler
import maya.cmds
import maya.mel
class VRayHandler(DefaultMayaHandler):
"""Render Handler for V-Ray"""
def __init__(self):
"""
Initializes the V-Ray Renderer Handler.
... | aws-deadline/deadline-cloud-for-maya | src/deadline/maya_adaptor/MayaClient/render_handlers/vray_handler.py | .py | 801c4f2146e51343 | 7.65 | 19 |
# Copyright Amazon.com, Inc. or its affiliates. All Rights Reserved.
from __future__ import annotations
import os
import re
import time
from functools import lru_cache
from pathlib import Path
from typing import Any, Generator, Iterable
from .file_path_editor import FilePathEditor
from .scene import Animation, Render... | aws-deadline/deadline-cloud-for-maya | src/deadline/maya_submitter/assets.py | .py | 6c55405443c98ba1 | 7.65 | 19 |
# Copyright Amazon.com, Inc. or its affiliates. All Rights Reserved.
from __future__ import annotations
import maya.cmds
"""
Functionality for interacting with Cameras in a Maya scene.
"""
ALL_CAMERAS = "All Renderable Cameras"
def get_renderable_camera_names() -> list[str]:
"""
Returns a list of all camer... | aws-deadline/deadline-cloud-for-maya | src/deadline/maya_submitter/cameras.py | .py | 3cecaad9e1d21dbd | 7.65 | 19 |
# Copyright Amazon.com, Inc. or its affiliates. All Rights Reserved.
from __future__ import annotations
import dataclasses
from dataclasses import dataclass, field
from pathlib import Path
import json
from deadline.client.ui.dataclasses.timeouts import TimeoutEntry, TimeoutTableEntries
from datetime import timedelta
... | aws-deadline/deadline-cloud-for-maya | src/deadline/maya_submitter/data_classes.py | .py | 5cd6a08c29ce7f47 | 7.65 | 19 |
# Copyright Amazon.com, Inc. or its affiliates. All Rights Reserved.
from __future__ import annotations
import os
from dataclasses import dataclass
from typing import Optional
import maya.cmds
from .utils import strtobool
@dataclass
class FileRef:
"""
Dataclass containing a reference to a single reference... | aws-deadline/deadline-cloud-for-maya | src/deadline/maya_submitter/file_path_editor.py | .py | 8768fe192382e620 | 7.65 | 19 |
# Copyright Amazon.com, Inc. or its affiliates. All Rights Reserved.
"""
Functionality for creating a global logger for the maya submitter.
"""
from __future__ import absolute_import, print_function
import logging
import logging.handlers
import os
import tempfile
from typing import Any
import maya.OpenMaya as om #... | aws-deadline/deadline-cloud-for-maya | src/deadline/maya_submitter/logging.py | .py | a65a3de596f907ba | 7.65 | 19 |
# Copyright Amazon.com, Inc. or its affiliates. All Rights Reserved.
"""
Defines the Render submitter command which is registered in Maya.
"""
import maya.api.OpenMaya as om # pylint: disable=import-error
import maya.cmds
from qtpy.QtCore import Qt # type: ignore
from qtpy.QtWidgets import ( # type: ignore
QAp... | aws-deadline/deadline-cloud-for-maya | src/deadline/maya_submitter/mel_commands.py | .py | 48a5ba8f0cf07bd3 | 7.65 | 19 |
# Copyright Amazon.com, Inc. or its affiliates. All Rights Reserved.
"""
Functionality for interacting with Maya's Render Layers
"""
from contextlib import contextmanager
from enum import IntEnum
from typing import List
import maya.app.renderSetup.model.renderSetupPreferences as renderSetupPrefs # type: ignore
impo... | aws-deadline/deadline-cloud-for-maya | src/deadline/maya_submitter/render_layers.py | .py | 309ed4e7d7610d4d | 7.65 | 19 |
# Copyright Amazon.com, Inc. or its affiliates. All Rights Reserved.
from __future__ import annotations
import os
from dataclasses import dataclass
from enum import Enum
from typing import Iterator, Optional
import maya.cmds
"""
Functionality used for querying scene settings
"""
class RendererNames(Enum):
"""
... | aws-deadline/deadline-cloud-for-maya | src/deadline/maya_submitter/scene.py | .py | 2bab68c88d41da00 | 7.65 | 19 |
# Copyright Amazon.com, Inc. or its affiliates. All Rights Reserved.
import os
from qtpy.QtCore import QSize, Qt, QRegularExpression # type: ignore
from qtpy.QtWidgets import ( # type: ignore
QCheckBox,
QComboBox,
QFileDialog,
QGridLayout,
QHBoxLayout,
QLabel,
QLineEdit,
QPushButton,
... | aws-deadline/deadline-cloud-for-maya | src/deadline/maya_submitter/ui/components/scene_settings_tab.py | .py | 3cc585ed7ebb7045 | 7.65 | 19 |
# Copyright Amazon.com, Inc. or its affiliates. All Rights Reserved.
"""Utilities for checking and displaying update notifications."""
import logging
from dataclasses import dataclass
from deadline.client.api import safe_check_for_updates, UpdateCheckResult, UpdateCheckStatus
from deadline.client.ui.dialogs.update_a... | aws-deadline/deadline-cloud-for-maya | src/deadline/maya_submitter/update_utils.py | .py | 515aac0a22dcb9d6 | 7.65 | 19 |
# Copyright Amazon.com, Inc. or its affiliates. All Rights Reserved.
"""
Minor utility functions
"""
from __future__ import annotations
import os
import re
import time
from functools import wraps
from typing import Callable
from maya.app.general.fileTexturePathResolver import _patternToRegex
def strtobool(val: st... | aws-deadline/deadline-cloud-for-maya | src/deadline/maya_submitter/utils.py | .py | f32a45f955d21cca | 7.65 | 19 |
"""
SecurityGuard — Security fence enforcer (Tool Wrapper's police).
This module blocks dangerous operations at code level — Agent CANNOT bypass:
- Blacklist command interception (regex matching)
- Path restriction enforcement
- Write protection toggle
"""
from __future__ import annotations
import logging
import re
... | NVFivem/pattern8 | src/p8/enforcement/security_guard.py | .py | b51970953cbed427 | 7.45 | 7 |
"""Base class for optimization atoms."""
from abc import ABC, abstractmethod
from dataclasses import dataclass
import torch
from typing_extensions import Self
from rlaopt.expression import Expression, ExprTree, Variable
from rlaopt.ext_tensordict import TensorDict
@dataclass(kw_only=True, frozen=True)
class AtomDe... | udellgroup/rlaopt | rlaopt/atoms/atom.py | .py | 1d8b9b01813dd2f3 | 7.42 | 6 |
"""Box constraint atom for optimization."""
import torch
from rlaopt.atoms.polyhedron import Polyhedron
from rlaopt.expression import Variable
from rlaopt.ext_tensordict import TensorDict
class Box(Polyhedron):
"""Box constraint atom representing elementwise bounds.
A box constraint restricts each element ... | udellgroup/rlaopt | rlaopt/atoms/box.py | .py | af6dd36448a3929c | 7.42 | 6 |
"""Elastic net regularization atom."""
import torch
from rlaopt.atoms.nonsmooth_regularizer import NonsmoothRegularizer
from rlaopt.expression import Expression
from rlaopt.ext_tensordict import TensorDict
class ElasticNet(NonsmoothRegularizer):
"""Elastic net regularization combining L1 and L2 penalties.
... | udellgroup/rlaopt | rlaopt/atoms/elastic_net.py | .py | 45a738e1b8c9c1a3 | 7.42 | 6 |
"""Halfspace constraint atom for optimization."""
import torch
from rlaopt.atoms.polyhedron import Polyhedron
from rlaopt.expression import Variable
from rlaopt.ext_tensordict import TensorDict
class Halfspace(Polyhedron):
"""Halfspace constraint atom representing a linear inequality.
A halfspace constrain... | udellgroup/rlaopt | rlaopt/atoms/halfspace.py | .py | 1e04f45f62f1b7f8 | 7.42 | 6 |
"""Linear equality constraint atom for optimization."""
import torch
from rlaopt.atoms.polyhedron import Polyhedron
from rlaopt.expression import Variable
from rlaopt.ext_tensordict import TensorDict
class LinearEquality(Polyhedron):
"""Linear equality constraint atom enforcing A @ x = b.
Represents a syst... | udellgroup/rlaopt | rlaopt/atoms/linear_equality.py | .py | 6293c2bc29d79734 | 7.42 | 6 |
from enum import Enum
import torch
from ._tweedie import (
CompoundPoissonGammaLoss,
GammaLoss,
InverseGaussianLoss,
PoissonLoss,
)
class LossType(Enum):
"""Enumeration of different loss types for GLM models."""
GAMMA = "gamma"
HUBER = "huber"
INV_GAUSS = "inverse_gaussian"
LEAS... | udellgroup/rlaopt | rlaopt/atoms/linear_model/_loss_factory.py | .py | 1243dcb9e5f8b6da | 7.42 | 6 |
"""Tweedie loss functions.
This module provides loss functions for GLMs with link functions,
from the Tweedie family of distributions.
"""
import torch
from torch.nn.modules.loss import _Loss
class TweedieLoss(_Loss):
"""Tweedie loss for regression.
The Tweedie distribution is a family of distributions tha... | udellgroup/rlaopt | rlaopt/atoms/linear_model/_tweedie.py | .py | 5c28ab029891f162 | 7.42 | 6 |
"""Norm ball constraint atoms for optimization."""
from abc import ABC, abstractmethod
from numbers import Real
import torch
from rlaopt.atoms.atom import Atom, AtomDecomposition
from rlaopt.atoms.lp_norm_helpers import (
project_onto_l1_ball,
project_onto_l2_ball,
project_onto_linf_ball,
)
from rlaopt.e... | udellgroup/rlaopt | rlaopt/atoms/lp_norm_balls.py | .py | 2ce8f651c11480db | 7.42 | 6 |
"""Euclidean projections onto Lp-norm balls."""
import functools
import torch
def _zero_for_nonpositive_radius(projection):
"""Normalize ``radius`` to a tensor and short-circuit a zero projection.
Wraps a projection so it converts ``radius`` to a tensor on ``x``'s device
and dtype and, when the radius ... | udellgroup/rlaopt | rlaopt/atoms/lp_norm_helpers.py | .py | 237627255e71e701 | 7.42 | 6 |
"""Non-negativity constraint atom for optimization."""
from rlaopt.atoms.box import Box
from rlaopt.expression import Variable
class NonNegative(Box):
"""Non-negativity constraint atom enforcing x >= 0.
A convenience class for box constraints with lower bound of zero and
no upper bound, enforcing that a... | udellgroup/rlaopt | rlaopt/atoms/non_negative.py | .py | 9e4c5a328a2b46e9 | 7.42 | 6 |
"""Base class for nonsmooth regularization atoms."""
from abc import ABC
import torch
from typing_extensions import Self
from rlaopt.atoms.atom import Atom, AtomDecomposition
from rlaopt.expression import Expression, Variable
class NonsmoothRegularizer(Atom, ABC):
"""Base class for nonsmooth regularization ato... | udellgroup/rlaopt | rlaopt/atoms/nonsmooth_regularizer.py | .py | 702538c621441b06 | 7.42 | 6 |
"""Nuclear norm atom for matrix regularization."""
from typing import Any
import torch
from rlaopt.atoms.nonsmooth_regularizer import NonsmoothRegularizer
from rlaopt.expression import Expression
from rlaopt.ext_tensordict import TensorDict
class NucNorm(NonsmoothRegularizer):
"""Nuclear norm (sum of singular ... | udellgroup/rlaopt | rlaopt/atoms/nuc_norm.py | .py | baed6860e9d2e4e5 | 7.42 | 6 |
"""Polyhedron constraint atom for optimization."""
from enum import Enum, auto
from functools import partial
from math import isclose
from typing import Callable
from warnings import warn
import torch
from typing_extensions import Self
from rlaopt.atoms.atom import Atom, AtomDecomposition
from rlaopt.expression impo... | udellgroup/rlaopt | rlaopt/atoms/polyhedron.py | .py | add3f7e0a0687289 | 7.42 | 6 |
"""Implementations of quadratic form atoms."""
from abc import ABC
import torch
from rlaopt.atoms.atom import Atom
from rlaopt.expression import Expression, Variable
from rlaopt.ext_tensordict import TensorDict
class _QuadForm(Atom, ABC):
"""Base class for quadratic form atoms ``f(x) = x^T Q x``.
The matr... | udellgroup/rlaopt | rlaopt/atoms/quad_form.py | .py | 3003d99c25fb7873 | 7.42 | 6 |
"""Collate functions for batching dataset samples with index tracking."""
import torch
from torch.utils.data._utils.collate import default_collate
class IndexTrackingCollate:
"""Collate function to stack (data, target, index) tuples into batch tensors."""
def __call__(self, batch):
"""Stack (data, t... | udellgroup/rlaopt | rlaopt/data/collate.py | .py | 81f2111d00540184 | 7.42 | 6 |
"""Custom DataLoader implementation with extended functionality for Dataset types.
This module provides a DataLoader class that extends PyTorch's standard DataLoader
to work with custom Dataset and BatchedDataset types, offering efficient access to
training labels based on the dataset type.
"""
from functools import ... | udellgroup/rlaopt | rlaopt/data/dataloader.py | .py | 2381b8f788b10d67 | 7.42 | 6 |
"""Dataset classes for handling various data modalities in machine learning workflows.
This module provides flexible dataset classes that bridge the gap between common data
formats (numpy, pandas) and PyTorch tensors, with support for both in-memory and
out-of-memory datasets.
Classes:
AbstractDataset: Base abstr... | udellgroup/rlaopt | rlaopt/data/datasets.py | .py | ecbba62a7c1219bb | 7.42 | 6 |
from abc import ABC, abstractmethod
import torch
from rlaopt.expression.expression import Expression
from rlaopt.expression.tree import ExprTree
class _NAryOpExpression(Expression, ABC):
"""Private base class for n-ary operations (operations on multiple expressions).
Provides infrastructure for expressions... | udellgroup/rlaopt | rlaopt/expression/_nary_op_expression.py | .py | 0006570e313d54d3 | 7.42 | 6 |
"""Module for Constant class."""
import torch
from rlaopt.expression.expression import Expression
from rlaopt.expression.tree import ExprTree
class Constant(Expression):
"""Constant value expression.
Represents a constant (non-trainable) value in an expression tree.
Constants are stored as buffers rath... | udellgroup/rlaopt | rlaopt/expression/constant.py | .py | 97e326d2006918ea | 7.42 | 6 |
"""Expression tree for testing and visualization."""
from collections import Counter
from typing_extensions import Self
class ExprTree:
"""Tree representation of expression structure.
Used for testing expression optimizations and visualizing expression structure.
Each node has a type (class name) and z... | udellgroup/rlaopt | rlaopt/expression/tree.py | .py | 625d3121700bb16a | 7.42 | 6 |
"""Utility functions for expression module."""
from functools import reduce
import torch
from rlaopt.expression import expr_types
def _create_sum(left, right):
"""Create an addition expression with automatic optimizations.
Optimizations:
- Flattens nested SumExpressions: (a + b) + c -> SumExpression(a... | udellgroup/rlaopt | rlaopt/expression/utils.py | .py | 5de66d33e6fd4907 | 7.42 | 6 |
"""Module for Variable class."""
import torch
from typing_extensions import Self
from rlaopt.expression.expression import Expression
from rlaopt.expression.tree import ExprTree
from rlaopt.settings import VAR_PREFIX
from rlaopt.utils.counter import get_id
class Variable(Expression):
"""Leaf optimization variabl... | udellgroup/rlaopt | rlaopt/expression/variable.py | .py | 6259222aa5ef378d | 7.42 | 6 |
"""Extended TensorDict module."""
import tensordict as td_lib
import torch
from torch.utils._pytree import register_pytree_node
from typing_extensions import Self
class TensorDict(td_lib.TensorDict):
"""Extended TensorDict with additional methods for optimization algorithms.
This class extends the PyTorch t... | udellgroup/rlaopt | rlaopt/ext_tensordict.py | .py | c78e29299f055812 | 7.42 | 6 |
"""LinSys module for positive-definite linear systems."""
from warnings import warn
import torch
from linops import LinearOperator, aslinearoperator
class LinSys(torch.nn.Module):
"""Module for regularized linear systems (A + reg * I)w = B."""
def __init__(
self,
A: torch.Tensor | LinearOpe... | udellgroup/rlaopt | rlaopt/linalg/lin_sys.py | .py | 6cc38be5358690a3 | 7.42 | 6 |
"""Factory for creating preconditioners based on configuration."""
import torch
from linops import LinearOperator
from rlaopt.linalg.preconditioners.identity import Identity, IdentityConfig
from rlaopt.linalg.preconditioners.nystrom import Nystrom, NystromConfig
from rlaopt.linalg.preconditioners.preconditioner impor... | udellgroup/rlaopt | rlaopt/linalg/preconditioners/factory.py | .py | 2fefec20c766bf81 | 7.42 | 6 |
"""Identity preconditioner and configuration."""
import torch
from linops import LinearOperator
from rlaopt.linalg.preconditioners.preconditioner import (
Preconditioner,
PreconditionerConfig,
)
class IdentityConfig(PreconditionerConfig):
"""Configuration for the Identity preconditioner."""
@proper... | udellgroup/rlaopt | rlaopt/linalg/preconditioners/identity.py | .py | 35448e2bdf4cec3f | 7.42 | 6 |
"""Nyström preconditioner and configuration."""
from typing import Literal
from warnings import warn
import torch
from linops import LinearOperator
from pydantic import Field, model_validator
from typing_extensions import Self
from rlaopt.linalg.preconditioners.preconditioner import (
Preconditioner,
Precond... | udellgroup/rlaopt | rlaopt/linalg/preconditioners/nystrom.py | .py | 905a9e2af271d879 | 7.42 | 6 |
"""
Scrape state metro(s) gas price daily averages from AAA Gas Prices website.
Usage::
mkdir -p data/metro-daily-averages
pip install selenium webdriver-manager pandas
python scrape_metro_daily_averages.py
"""
import datetime
import logging
import os
import random
import time
from pathlib import Path
... | lykmapipo/US-Gas-Prices | scrape_metro_daily_averages.py | .py | 918c9b15457765fb | 7.48 | 8 |
"""pytest configuration file.
This governs the arguments we can pass pytest and sets up the local test server.
The test server runs locally and mimics the DeepOrigin Platform API endpoints.
All tests use this local server instead of making real API calls.
"""
import os
import pytest
from deeporigin.auth import get... | deeporiginbio/do-dd-client | conftest.py | .py | 9c49a4b972dc0c1c | 8.09 | 14 |
"""PROTOTYPE DDOS-6937 — iframe postMessage ↔ AnyWidget bridge.
Throwaway module validating a supported Jupyter Widget Comm round trip.
Candidate lift target: ``deeporigin.utils.notebook.render_html_with_comm``.
"""
from __future__ import annotations
from dataclasses import dataclass, field
from typing import Any, C... | deeporiginbio/do-dd-client | prototypes/ddos-6937-interactive-box-wireframe/comm_bridge.py | .py | 18abcad48dd7daf2 | 7.59 | 14 |
#!/usr/bin/env python3
"""Detect stale tool-run fixtures whose version doesn't match ``TOOL_KEYS_AND_VERSIONS``.
A fixture is "stale" when the tool version baked into the fixture JSON
(``tool.version``, ``function.version``, or ``function.manifestBody.version``)
does not match the canonical version in
``deeporigin.pla... | deeporiginbio/do-dd-client | scripts/check_stale_fixtures.py | .py | dd37c583e449657f | 7.59 | 14 |
#!/usr/bin/env python3
"""Browser smoke test: JupyterLab renders the AnyWidget iframe bridge."""
from __future__ import annotations
from pathlib import Path
import subprocess
import time
import urllib.error
import urllib.request
def _repo_root() -> Path:
"""Return the do-dd-client repository root."""
root =... | deeporiginbio/do-dd-client | scripts/smoke_widget_render.py | .py | 7a9e825932749f2b | 7.59 | 14 |
"""Generate standalone Mol* visualization HTML files for the docs.
This is the single source of truth for how each ``docs/images/*.html`` Mol*
visualization is produced. Each entry in ``VIZ_REGISTRY`` maps a docs-image name
to a builder that returns a complete, self-contained HTML document (from the
``deeporigin.viz.m... | deeporiginbio/do-dd-client | skills/make-viz/scripts/build_docs_viz.py | .py | 2da78f0e0f87361d | 7.59 | 14 |
"""Command-line interface for Deep Origin."""
from __future__ import annotations
import json
from typing import Annotated
from beartype import beartype
import typer
from deeporigin.platform.client import DeepOriginClient
app = typer.Typer(help="Deep Origin CLI.")
results_app = typer.Typer(help="Result explorer com... | deeporiginbio/do-dd-client | src/cli.py | .py | 826a27d44c8d13e9 | 7.59 | 14 |
"""Simplified configuration management for Deep Origin client.
This module stores and retrieves configuration values including ``env`` and
``org_key``. Project selection is held in the
:class:`~deeporigin.platform.client.DeepOriginClient` instance only — nothing
project-related is persisted to disk.
Behavior:
- If th... | deeporiginbio/do-dd-client | src/config.py | .py | 3c5cfc3befe7f31f | 7.59 | 14 |
"""Admet -- predict admet-now endpoints for ligands (served, sync-only).
Backed by the served platform tool ``deeporigin.admet-properties``. One
:class:`Admet` instance is configured with ligands, then executed with a
blocking :meth:`run`, which returns a :class:`pandas.DataFrame` of predictions
keyed by admet-now tas... | deeporiginbio/do-dd-client | src/drug_discovery/admet.py | .py | 3ea1043a4e18b303 | 7.59 | 14 |
"""this module contains functions for aligning RDKit molecules."""
import copy
import numpy as np
def randomize_mol_pose(mol, seed: int = None):
"""
Takes a 3D RDKit molecule and returns a copy with a randomly rotated and translated conformation.
Args:
mol: RDKit molecule to randomize
s... | deeporiginbio/do-dd-client | src/drug_discovery/align.py | .py | 51fee1ab2e2d70e7 | 7.59 | 14 |
"""Contains functions for working with SDF files."""
from collections.abc import Sequence
from pathlib import Path
import re
from typing import Literal, Optional, Tuple
from beartype import beartype
import numpy as np
from rdkit import Chem, RDLogger
from rdkit.Chem import AllChem, SDWriter, rdFMCS, rdMolAlign
KeyTy... | deeporiginbio/do-dd-client | src/drug_discovery/chemistry.py | .py | fd997761fec45309 | 7.59 | 14 |
"""Mixins that compose execution capabilities for job classes.
These mixins are combined with ``Execution`` to build concrete types:
- ``SyncExecutableMixin`` -- blocking execution via ``run()``
- ``AsyncExecutableMixin`` -- async, stateful execution via ``start()`` and
``cancel()`` (platform refresh uses
:meth:`... | deeporiginbio/do-dd-client | src/drug_discovery/execution_mixins.py | .py | a37b6f57e8097805 | 7.59 | 14 |
"""
Utility functions for protein structure analysis.
Provides functions for working with protein structure files (PDB, CIF),
sequence extraction, sequence alignment analysis, and format conversion.
"""
import os
from beartype import beartype
@beartype
def three2one(prot) -> str:
"""Translate a protein sequenc... | deeporiginbio/do-dd-client | src/drug_discovery/external_tools/protein_structure.py | .py | d27f86ced9c2f7d1 | 7.59 | 14 |
"""Shared FEP parameter serialization for ABFE and RBFE workflow tools."""
from __future__ import annotations
from dataclasses import dataclass
from typing import Any
from beartype import beartype
from deeporigin.drug_discovery.structures.ligand import Ligand
from deeporigin.drug_discovery.structures.pose import Po... | deeporiginbio/do-dd-client | src/drug_discovery/fep_common.py | .py | 65873fb3fceba71b | 7.59 | 14 |
"""Synchronous ligand network generation with the Konnektor platform tool."""
from __future__ import annotations
from dataclasses import dataclass
from pathlib import Path
from typing import Any, Literal
from beartype import beartype
from deeporigin.drug_discovery.execution import Execution
from deeporigin.drug_dis... | deeporiginbio/do-dd-client | src/drug_discovery/konnektor.py | .py | f59aa03b7c22a6ac | 7.59 | 14 |
"""Molprops -- synchronous ADMET / molprops runs on one or more ligands.
Backed by the single combined platform tool ``deeporigin.mol-props-combined``,
which accepts a list of ``ligands`` and a ``molprops`` array selecting which
properties to compute, and returns one row per input ligand keyed by
``ligand_id``.
Usage... | deeporiginbio/do-dd-client | src/drug_discovery/molprops.py | .py | b8ee7d3c14936d2b | 7.59 | 14 |
"""Mixin for live Jupyter HTML updates while polling platform execution state.
- :meth:`NotebookWatchMixin.watch` — by default ``await`` returns immediately with a
background :class:`asyncio.Task` that updates the notebook display.
- Pass ``blocking=True`` or set env :data:`~deeporigin.utils.constants.JOB_WATCH_BLOC... | deeporiginbio/do-dd-client | src/drug_discovery/notebook_watch_mixin.py | .py | c2abea593993bec9 | 7.59 | 14 |
"""Patent -- extract chemical structures from PDF documents via ``deeporigin.draco``."""
from __future__ import annotations
from pathlib import Path
from typing import Any, Self
import uuid
from beartype import beartype
import pandas as pd
from deeporigin.drug_discovery.execution import Execution
from deeporigin.dr... | deeporiginbio/do-dd-client | src/drug_discovery/patent.py | .py | a019e0f895d99779 | 7.59 | 14 |
"""PocketFinder -- find binding pockets via synchronous or asynchronous execution.
Sync usage (blocking, returns pockets directly)::
pf = PocketFinder(protein)
pf.run(quote=True) # populates pf.estimate; pf.status == "Quoted"
pockets = pf.run() # blocking; calls get_results(); populates pf.cost
Async... | deeporiginbio/do-dd-client | src/drug_discovery/pocket_finder.py | .py | 08314174dbfc3907 | 7.59 | 14 |
"""Synchronous ligand protonation via ``client.executions.create``."""
from __future__ import annotations
from typing import Any
from beartype import beartype
from rdkit import Chem
from deeporigin.drug_discovery.execution import Execution
from deeporigin.drug_discovery.execution_mixins import SyncExecutableMixin
f... | deeporiginbio/do-dd-client | src/drug_discovery/protonation.py | .py | 14bdd724209073c5 | 7.59 | 14 |
"""
This module defines the Entity class for handling file uploads to a remote server in the context of drug discovery structures.
The Entity class provides methods to manage file uploads, such as protein structure files, to a remote storage system using the DeepOrigin FilesClient.
"""
from abc import ABC, abstractme... | deeporiginbio/do-dd-client | src/drug_discovery/structures/entity.py | .py | 86eca7d3c64bb3a2 | 7.59 | 14 |
"""SystemPrep -- sync-only execution for preparing a protein-pose system for ABFE or RBFE.
Usage (ABFE)::
sysprep = SystemPrep(protein=protein, pose=pose)
sysprep.run(quote=True) # populates sysprep.estimate; status == "Quoted"
prepared = sysprep.run() # returns PreparedSystem via get_results()
# U... | deeporiginbio/do-dd-client | src/drug_discovery/system_prep.py | .py | e4c65d93920f4778 | 7.59 | 14 |
"""Utility functions for the Drug Discovery module"""
import importlib.resources
import json
from typing import Any
from beartype import beartype
from deeporigin.drug_discovery.utils.visualize import (
render_smiles_in_dataframe, # noqa: F401
)
@beartype
def _load_params(param_file: str) -> dict:
"""load ... | deeporiginbio/do-dd-client | src/drug_discovery/utils/__init__.py | .py | d609e551cedcd5c3 | 7.59 | 14 |
import base64
import logging
import os
import re
import subprocess
import sys
import tempfile
import xml.etree.ElementTree as ET # ruff: ignore[suspicious-xml-etree-import]
import boto3
import botocore
import requests
from iterfzf import iterfzf
from pyquery import PyQuery as pq # ruff: ignore[camelcase-imported-as-... | app-sre/rh-aws-saml-login | rh_aws_saml_login/_core.py | .py | 654859bffb7f3068 | 7.65 | 19 |
"""Tests for the core module."""
# ruff: file-ignore[import-private-name]
import base64
from collections.abc import Callable
from pathlib import Path
import pytest
from requests_mock import Mocker as RequestsMocker
from rh_aws_saml_login._core import get_aws_accounts, get_saml_auth, select_aws_account
from rh_aws_sa... | app-sre/rh-aws-saml-login | tests/test_core.py | .py | 37e4ced94377484f | 7.15 | 19 |
"""Test all public API methods are available."""
# ruff: file-ignore[undocumented-public-function, import-outside-top-level]
from dataclasses import is_dataclass
def test_public_get_aws_credentials() -> None:
from rh_aws_saml_login import get_aws_credentials
assert callable(get_aws_credentials)
def test_p... | app-sre/rh-aws-saml-login | tests/test_public.py | .py | ab315e1cd356a838 | 8.15 | 19 |
# Copyright Amazon.com, Inc. or its affiliates. All Rights Reserved.
import os
import shutil
from datetime import datetime, timezone
from typing import Any
from hatchling.builders.hooks.plugin.interface import BuildHookInterface
class HatchCustomBuildHook(BuildHookInterface):
"""
This class implements Hatch'... | aws-deadline/deadline-cloud-for-cinema-4d | hatch_custom_hook.py | .py | b0926072d8fe64f5 | 7.63 | 17 |
# Copyright Amazon.com, Inc. or its affiliates. All Rights Reserved.
"""Script to create platform-specific Deadline Client installers using InstallBuilder."""
import os
import shutil
import sys
import tempfile
from pathlib import Path
from common import EvaluationBuildError, get_version_string, run
from deps_bundle i... | aws-deadline/deadline-cloud-for-cinema-4d | scripts/build_installer.py | .py | 88744fe108d30bfa | 7.63 | 17 |
# Copyright Amazon.com, Inc. or its affiliates. All Rights Reserved.
"""
Utility script to extract and clean Redshift debug logs from Cinema 4D detailed log files.
This script extracts HTML Redshift debug logs from Cinema 4D detailed log files and
removes timestamp prefixes to make them easier to read and compare. It'... | aws-deadline/deadline-cloud-for-cinema-4d | scripts/clean_redshift_detailed_logs.py | .py | 9b876142376327d7 | 7.63 | 17 |
# Copyright Amazon.com, Inc. or its affiliates. All Rights Reserved.
from __future__ import annotations
import fnmatch
import re
import shutil
import subprocess
from pathlib import Path
from tempfile import TemporaryDirectory
from typing import Any
from _project import Dependency, get_dependencies, get_project_dict
... | aws-deadline/deadline-cloud-for-cinema-4d | scripts/deps_bundle.py | .py | 9d614d9aee8f6333 | 7.63 | 17 |
# Copyright Amazon.com, Inc. or its affiliates. All Rights Reserved.
from __future__ import annotations
import os
import sys
from types import FrameType
# The Cinema4D Adaptor adds the `openjd` namespace directory to PYTHONPATH,
# so that importing just the adaptor_runtime_client should work.
try:
from adaptor_r... | aws-deadline/deadline-cloud-for-cinema-4d | src/deadline/cinema4d_adaptor/Cinema4DClient/cinema4d_client.py | .py | 7bbed521dc6780ac | 7.63 | 17 |
# Copyright Amazon.com, Inc. or its affiliates. All Rights Reserved.
"""OCIO view-transform baking for non-tile renders.
Works around a Cinema 4D SDK bug: ``RenderDocument``'s internal save does not apply
the OCIO View Transform, so ordinary (non-tile) renders to 8-bit display formats are
written un-tone-mapped (dark/... | aws-deadline/deadline-cloud-for-cinema-4d | src/deadline/cinema4d_adaptor/Cinema4DClient/ocio_bake.py | .py | e4d80864cc976974 | 7.63 | 17 |
# Copyright Amazon.com, Inc. or its affiliates. All Rights Reserved.
from __future__ import annotations
import os
from dataclasses import dataclass
from typing import Any
try:
import c4d # type: ignore
from c4d import bitmaps
except ImportError: # pragma: no cover
raise OSError("Could not find the Cinem... | aws-deadline/deadline-cloud-for-cinema-4d | src/deadline/cinema4d_adaptor/Cinema4DClient/tile_rendering.py | .py | 807a1f3ca8876178 | 7.63 | 17 |
# Copyright Amazon.com, Inc. or its affiliates. All Rights Reserved.
from __future__ import annotations
import logging
import re
from pathlib import Path
import c4d
from .font_utils import FONTS_DIR, copy_font_to_scene_folder, is_asset_a_font
from .path_validator import validate_asset_paths
from .platform_utils impo... | aws-deadline/deadline-cloud-for-cinema-4d | src/deadline/cinema4d_submitter/assets.py | .py | 5c96de7922429652 | 7.63 | 17 |
# Copyright Amazon.com, Inc. or its affiliates. All Rights Reserved.
"""Find and print Cinema 4D and Redshift log files after rendering."""
import os
import shutil
import sys
from pathlib import Path
# Constants
C4D_DETAILED_LOG_FILENAME = "c4d_detailed_logs.txt"
C4D_SECURE_TEMP_DIR_ENV_VAR = "C4D_DETAILED_LOG_DIR"
C... | aws-deadline/deadline-cloud-for-cinema-4d | src/deadline/cinema4d_submitter/detailed_logging_scripts/print_logs.py | .py | 63c90cf9d9b64a9d | 7.63 | 17 |
# Copyright Amazon.com, Inc. or its affiliates. All Rights Reserved.
"""Configure environment variables for Cinema 4D detailed logging."""
import os
import sys
import tempfile
# Constants
C4D_DETAILED_LOG_FILENAME = "c4d_detailed_logs.txt"
C4D_SECURE_TEMP_DIR_ENV_VAR = "C4D_DETAILED_LOG_DIR"
CONDA_PREFIX_ENV_VAR = "C... | aws-deadline/deadline-cloud-for-cinema-4d | src/deadline/cinema4d_submitter/detailed_logging_scripts/setup_logging.py | .py | b774388e65489da8 | 7.63 | 17 |
# Copyright Amazon.com, Inc. or its affiliates. All Rights Reserved.
import logging
import os
import shutil
from dataclasses import dataclass
from pathlib import Path
from typing import Any
import c4d
from .platform_utils import is_windows
from .warning_logging_handler import WarningCollectorHandler
FONTS_DIR = "fo... | aws-deadline/deadline-cloud-for-cinema-4d | src/deadline/cinema4d_submitter/font_utils.py | .py | 0363768aca685a35 | 7.63 | 17 |
# Copyright Amazon.com, Inc. or its affiliates. All Rights Reserved.
"""
Platform utility functions for cross-platform compatibility.
"""
import sys
def is_windows() -> bool:
"""Check if running on Windows."""
return sys.platform == "win32"
def is_macos() -> bool:
"""Check if running on macOS."""
... | aws-deadline/deadline-cloud-for-cinema-4d | src/deadline/cinema4d_submitter/platform_utils.py | .py | f877449848dc6972 | 7.13 | 17 |
# Copyright Amazon.com, Inc. or its affiliates. All Rights Reserved.
from __future__ import annotations
from copy import deepcopy
from typing import Any
from ._yaml_utils import _build_embedded_yaml
from .data_classes import RenderSubmitterUISettings
def build_tile_task_parameters(tiles_columns: int, tiles_rows: in... | aws-deadline/deadline-cloud-for-cinema-4d | src/deadline/cinema4d_submitter/tile_utils.py | .py | 72d6400669f00b8b | 7.63 | 17 |
# Copyright Amazon.com, Inc. or its affiliates. All Rights Reserved.
import os
from qtpy.QtCore import QSize, Qt # type: ignore
from qtpy.QtWidgets import ( # type: ignore
QCheckBox,
QComboBox,
QFileDialog,
QGridLayout,
QGroupBox,
QHBoxLayout,
QLabel,
QLineEdit,
QPushButton,
Q... | aws-deadline/deadline-cloud-for-cinema-4d | src/deadline/cinema4d_submitter/ui/components/scene_settings_tab.py | .py | 95e59e4cfe67ef33 | 7.63 | 17 |
# Copyright Amazon.com, Inc. or its affiliates. All Rights Reserved.
from qtpy.QtWidgets import (
QDialog,
QHBoxLayout,
QLabel,
QPushButton,
QTextEdit,
QVBoxLayout,
)
from ...style import HEADER_LABEL_STYLE
class SubmissionWarningDialog(QDialog):
"""
Dialog to display warnings to us... | aws-deadline/deadline-cloud-for-cinema-4d | src/deadline/cinema4d_submitter/ui/components/submission_warning_dialog.py | .py | 3591939ce42aac77 | 7.63 | 17 |
# Copyright Amazon.com, Inc. or its affiliates. All Rights Reserved.
"""Utilities for checking and displaying update notifications."""
import logging
from dataclasses import dataclass
from deadline.client.api import UpdateCheckResult, UpdateCheckStatus, safe_check_for_updates
from deadline.client.ui.dialogs.update_a... | aws-deadline/deadline-cloud-for-cinema-4d | src/deadline/cinema4d_submitter/update_utils.py | .py | a3af6cc081d910dc | 7.63 | 17 |
# Copyright Amazon.com, Inc. or its affiliates. All Rights Reserved.
class WarningCollector:
"""
Collects warnings during asset processing to display them to users.
"""
def __init__(self):
self._warnings: list[str] = []
def add_warning(self, warning_message: str):
"""Add a warnin... | aws-deadline/deadline-cloud-for-cinema-4d | src/deadline/cinema4d_submitter/warning_collector.py | .py | a326387ea3429b2a | 7.63 | 17 |
# Copyright Amazon.com, Inc. or its affiliates. All Rights Reserved.
import logging
from .warning_collector import warning_collector
class WarningCollectorHandler(logging.Handler):
"""
Custom logging handler that automatically adds warning messages to the warning collector.
"""
def emit(self, recor... | aws-deadline/deadline-cloud-for-cinema-4d | src/deadline/cinema4d_submitter/warning_logging_handler.py | .py | d96c3f3a125d69a5 | 7.63 | 17 |
"""Update checker for SRR — stdlib only, no new dependencies."""
import asyncio
import json
import logging
import urllib.error
import urllib.request
from typing import Optional
from version import __version__
LATEST_RELEASE_URL = "https://github.com/Mefgner/Smart-Refresh-Rate/releases/latest"
RELEASES_API_URL = "htt... | Mefgner/Smart-Refresh-Rate | update_check.py | .py | 880aa688dc909d24 | 7.42 | 6 |
#!/usr/bin/env python3
import os
import subprocess
import sys
from pathlib import Path
def find_project_root(start_dir: Path, cli_rel_path: str) -> Path:
"""Traverse upward from start_dir to find a directory containing cli_rel_path."""
current = start_dir.resolve()
root = Path(current.root)
while curr... | matthewhand/open-swarm | scripts/codey_py_entry.py | .py | 5c2f129989634e6c | 7.63 | 17 |
#!/usr/bin/env python3
"""
Auto-generates a markdown table of all blueprints and their metadata for the README.
Run this after adding or updating any blueprint metadata.
"""
import glob
import importlib.util
import inspect
import os
import sys
REPO_ROOT = os.path.dirname(os.path.dirname(os.path.abspath(__file__)))
REA... | matthewhand/open-swarm | scripts/gen_blueprint_table.py | .py | 3e79c757a32c108e | 7.63 | 17 |
#!/usr/bin/env python3
"""
Marker-driven exact paste for USERGUIDE.md (and README.md).
Insert before a ```text block:
<!-- from-scratch: wizard-capture.txt -->
```text
...old...
```
It replaces the body with exact content of $SCRATCH/wizard-capture.txt (stripped? but keep structure).
Run after fresh captures, before t... | matthewhand/open-swarm | scripts/paste_userguide_from_scratch.py | .py | 093412c251cb4973 | 7.63 | 17 |
#!/usr/bin/env python3
"""Prove every available CLI works across every framework permutation.
Discovers the installed catalog CLIs and exercises them LIVE through each
blueprint/consensus mode, printing a PASS/FAIL matrix with verbatim output.
Run: DJANGO_DEBUG=true python scripts/prove_cli_permutations.py
"""
impor... | matthewhand/open-swarm | scripts/prove_cli_permutations.py | .py | 8d63b7d0b44c878a | 7.63 | 17 |
#!/usr/bin/env python3
"""Render docs/demo/cli-and-api.gif — the README terminal demo.
The GIF shows the core differentiator: ONE blueprint (zeus) runs as a local
CLI command AND answers via the OpenAI-compatible HTTP API.
Honesty rule: every output line shown in the animation is a genuine capture
(see docs/demo/capt... | matthewhand/open-swarm | scripts/render_demo_gif.py | .py | 256dafaa3496f4ae | 7.63 | 17 |
#!/usr/bin/env python3
"""
Run pytest in a stable way across environments:
- Disable auto plugin autoload (blocks problematic global plugins)
- Explicitly enable required plugins: pytest-django, pytest-asyncio, pytest-mock
Usage:
python scripts/run_tests.py [pytest args]
# or
./scripts/run_tests.py -q
"""
import... | matthewhand/open-swarm | scripts/run_tests.py | .py | 1252552cc3b9ec0f | 7.13 | 17 |
#!/usr/bin/env python
"""Parallel stress-test harness for the Open Swarm test suite.
Ported from archive/local-main-2025-04 (swarm_nuclear_scale.py). Spawns many
concurrent, staggered pytest runs of the same target to flush out flaky tests,
shared-state bugs, and resource contention. Uses only the stdlib plus pytest.
... | matthewhand/open-swarm | scripts/stress_test_suite.py | .py | dfec2e93831a8b70 | 8.13 | 17 |
import logging
import logging.config
import os # Import os
from django.apps import AppConfig
# Import Django settings and logging config
from django.conf import settings
logger = logging.getLogger(__name__)
class SwarmConfig(AppConfig):
default_auto_field = 'django.db.models.BigAutoField'
name = 'swarm'
... | matthewhand/open-swarm | src/swarm/apps.py | .py | cdcd74683607e026 | 7.63 | 17 |
import asyncio
import logging
import os
import sys
from pathlib import Path
from typing import Any, ClassVar
from dotenv import load_dotenv
load_dotenv(override=True)
# Set logging to WARNING by default unless SWARM_DEBUG=1
if not os.environ.get("SWARM_DEBUG"):
logging.basicConfig(level=logging.WARNING)
else:
... | matthewhand/open-swarm | src/swarm/blueprints/chatbot/blueprint_chatbot.py | .py | f5800d17b4a82dde | 7.63 | 17 |
"""
Chucks Angels Blueprint
"""
from collections.abc import AsyncGenerator
from typing import Any
from swarm.core.blueprint_base import BlueprintBase # Import the base class
class ChucksAngelsBlueprint(BlueprintBase): # Inherit from BlueprintBase
"""
Blueprint for Chucks Angels. Coordinates angelic tasks, C... | matthewhand/open-swarm | src/swarm/blueprints/chucks_angels/blueprint_chucks_angels.py | .py | 33bb22af9f7f6bb2 | 7.63 | 17 |
"""CLI Agent blueprint — expose a single configured agentic CLI over the
OpenAI-compatible API.
This is the minimal drop-in: a request to ``model: "cli_agent"`` runs one
configured CLI (``claude``, ``gemini``, ...) one-shot and streams its answer
back as a normal chat completion. Which CLI runs is chosen by (in order)... | matthewhand/open-swarm | src/swarm/blueprints/cli_agent/blueprint_cli_agent.py | .py | 37cf2a8fa68f56b2 | 7.63 | 17 |
"""CLI Orchestrator blueprint — granular consensus.
The prototype of "fusion as a composable primitive". A cheap **router** CLI runs
a single inference and answers directly; when it judges the question high-stakes
(correctness-critical, security/production, contested) it *escalates that one
question* to a cross-model ... | matthewhand/open-swarm | src/swarm/blueprints/cli_orchestrator/blueprint_cli_orchestrator.py | .py | 5e5eedbe8d3df445 | 7.63 | 17 |
"""CLI Pipeline blueprint — sequential refinement.
The sequential complement to ``cli_fusion``. Where fusion sends the *same*
prompt to a panel **in parallel** and finds consensus, pipeline chains CLIs **in
order**: each stage refines the previous stage's output. Different backends play
to their strengths in sequence ... | matthewhand/open-swarm | src/swarm/blueprints/cli_pipeline/blueprint_cli_pipeline.py | .py | 8129811989c0a342 | 7.63 | 17 |
"""CLI Planner blueprint — Magentic-One-style ledger.
A planner CLI maintains a *task ledger*: it drafts an initial plan, delegates
subtasks to specialist worker CLIs one at a time, inspects each result, and
**re-plans on stall** — adding follow-up subtasks until the goal is met or a
round budget is exhausted — then s... | matthewhand/open-swarm | src/swarm/blueprints/cli_planner/blueprint_cli_planner.py | .py | 37d07e9b2657d2d5 | 7.63 | 17 |
"""Shared helpers for the CLI-agent blueprints (``cli_agent`` and ``cli_fusion``).
Keeps prompt rendering, adapter-registry construction, panelist selection, and
the chunk shapes blueprints yield in one place so the single-CLI and fusion
blueprints stay consistent.
"""
from __future__ import annotations
import loggi... | matthewhand/open-swarm | src/swarm/blueprints/common/cli_fusion_support.py | .py | f6d81af13e797982 | 7.63 | 17 |
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