text stringlengths 185 73.3k | repo stringlengths 7 100 | path stringlengths 4 146 | language stringclasses 7
values | hash stringlengths 16 16 | score float64 7 8.5 | stars int64 0 237k |
|---|---|---|---|---|---|---|
"""Adaptor for xtb-python package.
Great overview of how to implement this adaptor:
https://github.com/grimme-lab/xtb-python/blob/main/xtb/qcschema/harness.py
"""
import importlib
import os
from collections.abc import Callable
import numpy as np
from qcdata import CalcType, ProgramInput, SinglePointData, Wavefunctio... | atomsforhumanity/qccompute | src/qccompute/adapters/xtb.py | .py | e7e5d4cd8e27fe46 | 7.42 | 6 |
"""Top level compute functions for qccompute."""
import traceback
from collections.abc import Callable
from typing import Any
from warnings import warn
from qcdata import (
CalcType,
DataType,
Files,
InputType,
Model,
ProgramInput,
ProgramOutput,
Structure,
)
from qcdata.helper_types i... | atomsforhumanity/qccompute | src/qccompute/main.py | .py | d4d033ee83f3c2a9 | 7.42 | 6 |
import shutil
from functools import lru_cache
from qcdata import FileInput, Inputs
from .adapters import BaseAdapter, FileAdapter, registry
from .exceptions import AdapterNotFoundError, ProgramNotFoundError
@lru_cache # Improves perf of tests when repeatedly called
def prog_available(program: str) -> bool:
"""... | atomsforhumanity/qccompute | src/qccompute/utils.py | .py | 52ea04be29014a78 | 7.42 | 6 |
from pathlib import Path
import pytest
from qccompute.adapters import TeraChemAdapter
from qccompute.adapters.utils import tmpdir
from qccompute.exceptions import AdapterError, AdapterInputError
def test_get_version_no_stdout(monkeypatch):
"""Test get_version method."""
adapter = TeraChemAdapter()
# Mon... | atomsforhumanity/qccompute | tests/adaptors/test_terachem.py | .py | aa87c507d481582e | 7.92 | 6 |
import numpy as np
import pytest
from qcdata import (
CalcType,
DualProgramInput,
ProgramArgs,
ProgramInput,
ProgramOutput,
SinglePointData,
Structure,
)
from qccompute.adapters.base import ProgramAdapter
from qccompute.utils import prog_available
@pytest.fixture(scope="session")
def hyd... | atomsforhumanity/qccompute | tests/conftest.py | .py | 932f877c3de4cee3 | 7.92 | 6 |
import pytest
from qcdata import CalcType, DualProgramInput, OptimizationResults, ProgramOutput
from qccompute.adapters import GeometricAdapter
from tests.conftest import skipif_program_not_available
@pytest.mark.integration
@skipif_program_not_available("terachem")
def test_full_optimization(dual_prog_input_factory... | atomsforhumanity/qccompute | tests/integration_tests/test_geometric_integration.py | .py | fee29238d65dc77e | 7.92 | 6 |
"""Test utils functions."""
import builtins
from pathlib import Path
import pytest
from qccompute.adapters.utils import capture_logs, execute_subprocess, tmpdir
from qccompute.exceptions import ExternalProgramError, ProgramNotFoundError
from qccompute.utils import available_programs, prog_available
def test_tmpdir... | atomsforhumanity/qccompute | tests/test_utils.py | .py | c64b9d54d483d091 | 7.92 | 6 |
# Copyright (c) 2025, NVIDIA CORPORATION. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applic... | NVIDIA-NeMo/FW-CI-templates | .github/actions/check-imports/check_imports.py | .py | 27e542e668191842 | 7.5 | 9 |
#!/usr/bin/env python3
"""
Script to check and optionally add NVIDIA copyright headers to files.
"""
import sys
import argparse
import re # Import the regular expression module
from pathlib import Path
from datetime import datetime
# Regex to check for in leading comment lines.
# Supports both legacy NVIDIA copyrigh... | NVIDIA-NeMo/FW-CI-templates | .github/actions/copyright-checker/check_copyright.py | .py | 31d0fb444899910e | 7.5 | 9 |
# Copyright (c) 2026, NVIDIA CORPORATION. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by appli... | NVIDIA-NeMo/FW-CI-templates | .github/actions/identify-follow-up-issues/test_identify_follow_up_issues.py | .py | cc5af618705cb77b | 7 | 9 |
# Copyright (c) {{cookiecutter.year}}, NVIDIA CORPORATION. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless ... | NVIDIA-NeMo/FW-CI-templates | github_repo_template/{{cookiecutter.project_slug}}/tests/conftest.py | .py | 2567096e398d9de1 | 8 | 9 |
#!/usr/bin/env python3
#
# Copyright 2026 Red Hat, Inc.
#
# Licensed under the Apache License, Version 2.0 (the "License"); you may
# not use this file except in compliance with the License. You may obtain
# a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable la... | openstack-k8s-operators/edpm-ansible | openstack_ansibleee/write_runner_summary.py | .py | 69fd6ba98b07ab6b | 7.64 | 18 |
#!/usr/bin/python
# -*- coding: utf-8 -*-
# Copyright 2019 Red Hat, Inc.
# All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License"); you may
# not use this file except in compliance with the License. You may obtain
# a copy of the License at
#
# http://www.apache.org/lice... | openstack-k8s-operators/edpm-ansible | plugins/modules/container_config_hash.py | .py | 420cd6cbc475f5ea | 7.64 | 18 |
#!/usr/bin/python
# -*- coding: utf-8 -*-
# Copyright 2020 Red Hat, Inc.
# All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License"); you may
# not use this file except in compliance with the License. You may obtain
# a copy of the License at
#
# http://www.apache.org/lice... | openstack-k8s-operators/edpm-ansible | plugins/modules/edpm_os_net_config_mappings.py | .py | 5f445043e2f6acd1 | 7.64 | 18 |
#!/usr/bin/env python
#
# Copyright 2018 Red Hat Inc.
#
# Licensed under the Apache License, Version 2.0 (the "License"); you may
# not use this file except in compliance with the License. You may obtain
# a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law... | openstack-k8s-operators/edpm-ansible | roles/edpm_nova/files/nova_statedir_ownership.py | .py | a3707e4693eeec70 | 7.64 | 18 |
# Copyright 2023 Red Hat, Inc.
# All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License"); you may
# not use this file except in compliance with the License. You may obtain
# a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law ... | openstack-k8s-operators/edpm-ansible | roles/edpm_tuned/molecule/isolated/tests/test_isolated.py | .py | f03f6c4d5d1184e0 | 7.14 | 18 |
import os
import json
import requests
import time
from datetime import datetime
from collections import defaultdict
from typing import Dict, List, Tuple
# 配置项
GITHUB_TOKEN = os.getenv("GH_TOKEN")
OUTPUT_FILE = "STARS.md"
CACHE_FILE = "stars_cache.json"
REQUEST_INTERVAL = 1 # API请求间隔
class GitHubStarOrganizer:
de... | Fgaoxing/Fgaoxing | starmgr.py | .py | 46ae9fd3dc71cdee | 7.62 | 16 |
import re
import subprocess
import sys
from datetime import datetime
from pathlib import Path
import toml
def get_repo_url():
"""Get the repository URL from pyproject.toml or ask the user for it."""
try:
with open("pyproject.toml") as file:
pyproject = toml.load(file)
repo_url = p... | atomsforhumanity/qccodec | scripts/release.py | .py | 0c93d1a00a062778 | 7.45 | 7 |
"""Top level functions for the tcparse library"""
import logging
from importlib import import_module
from pathlib import Path
from typing import Any
from qcdata import (
CalcType,
ConformerSearchData,
OptimizationData,
ProgramInput,
SinglePointData,
StructuredData,
StructuredInputs,
)
fro... | atomsforhumanity/qccodec | src/qccodec/codec.py | .py | 7f47c9a1793cc897 | 7.45 | 7 |
import copy
import os
from typing import Any
import tomli_w
from qcdata import CalcType, ProgramInput
from qccodec.exceptions import EncoderError
from qccodec.models import NativeInput
SUPPORTED_CALCTYPES = {
CalcType.conformer_search,
CalcType.optimization,
CalcType.energy,
CalcType.gradient,
Ca... | atomsforhumanity/qccodec | src/qccodec/encoders/crest.py | .py | becf07c01ca30e51 | 7.45 | 7 |
from collections.abc import Mapping
from typing import Any
from qcdata import CalcType, ProgramInput
from qccodec.exceptions import EncoderError
from qccodec.models import NativeInput
SUPPORTED_CALCTYPES = {
CalcType.energy,
CalcType.gradient,
CalcType.hessian,
CalcType.optimization,
CalcType.tra... | atomsforhumanity/qccodec | src/qccodec/encoders/orca.py | .py | 30ec670f84042741 | 7.45 | 7 |
class BaseError(Exception):
"""Base qccodec exceptions"""
class DecoderError(BaseError):
"""Exception raised when a decoder error occurs"""
class EncoderError(BaseError):
"""Exception raised when a encoder error occurs"""
class ParserError(BaseError):
"""Base exception for parsers"""
def __in... | atomsforhumanity/qccodec | src/qccodec/exceptions.py | .py | 80d1300b1da651ea | 7.45 | 7 |
"""Simple data models to support parsing of QM program output files."""
from dataclasses import dataclass
from typing import Any
from .exceptions import DataCollectorError
class DataCollector(dict):
"""A dictionary for collecting data from parsers."""
def add_data(self, target: str | tuple[str, ...], value... | atomsforhumanity/qccodec | src/qccodec/models.py | .py | 49e477388a65d5d8 | 7.45 | 7 |
import math
import re
from collections.abc import Generator
from enum import Enum
from pathlib import Path
from typing import Any
import numpy as np
from qcconst import constants
from qcdata import (
CalcType,
ProgramInput,
ProgramOutput,
Provenance,
SinglePointData,
Structure,
)
from qccodec.... | atomsforhumanity/qccodec | src/qccodec/parsers/crest.py | .py | 55934cf264a56d3d | 7.45 | 7 |
"""Parsers for Orca output files."""
import itertools
import re
from enum import Enum
from pathlib import Path
from typing import Generator
from qcdata import (
CalcType,
ProgramInput,
ProgramOutput,
Provenance,
SinglePointData,
Structure,
)
from qccodec.exceptions import MatchNotFoundError, ... | atomsforhumanity/qccodec | src/qccodec/parsers/orca.py | .py | a8ab2d35c73540cb | 7.45 | 7 |
"""Parsers for TeraChem output files."""
import re
from collections.abc import Generator
from enum import Enum
from pathlib import Path
from qcconst import constants
from qcdata import (
CalcType,
ProgramInput,
ProgramOutput,
Provenance,
SinglePointData,
Structure,
)
from qccodec.exceptions i... | atomsforhumanity/qccodec | src/qccodec/parsers/terachem.py | .py | 6c155529881fb270 | 7.45 | 7 |
import logging
import re
from qccodec.exceptions import MatchNotFoundError
logger = logging.getLogger(__name__)
def re_search(regex: str, contents: str, flags: int = 0) -> re.Match:
"""
Search for a regex pattern in a string and return the first match.
Raises:
MatchNotFoundError if no match is ... | atomsforhumanity/qccodec | src/qccodec/parsers/utils.py | .py | 9cd706e73a758b40 | 7.45 | 7 |
import inspect
from collections import defaultdict
from collections.abc import Callable
from dataclasses import dataclass, field
from enum import Enum
from qcdata import CalcType
from qccodec.exceptions import RegistryError
@dataclass
class ParserSpec:
"""Specification for a parser function.
This class hol... | atomsforhumanity/qccodec | src/qccodec/registry.py | .py | 6dc8825d3c9dd224 | 7.45 | 7 |
import inspect
import shutil
from collections.abc import Callable
from contextlib import contextmanager
from dataclasses import dataclass
from pathlib import Path
from typing import Any
import pytest
from qcdata import CalcType, ProgramInput
from qcdata.utils import water
from qccodec.codec import decode
from qccodec... | atomsforhumanity/qccodec | tests/conftest.py | .py | db4261059fa5a18a | 7.95 | 7 |
import pytest
from qcdata import CalcType, Model, ProgramInput
from qcdata.utils import water
from qccodec.encoders.orca import _validate_keywords, encode
from qccodec.exceptions import EncoderError
@pytest.mark.parametrize(
"calctype, method, basis, keywords",
[
(CalcType.energy, "b3lyp", "def2-svp"... | atomsforhumanity/qccodec | tests/test_orca_encoders.py | .py | ddbf58701732425b | 7.95 | 7 |
import pytest
from qccodec.encoders.terachem import PADDING, XYZ_FILENAME, encode
from qccodec.exceptions import EncoderError
def test_write_input_files(prog_input_factory):
"""Test write_input_files method."""
prog_input_factory = prog_input_factory("energy")
prog_input_factory.keywords.update({"purify"... | atomsforhumanity/qccodec | tests/test_terachem_encoders.py | .py | b136c714103a87d1 | 7.95 | 7 |
'''
WIP.
Its impossible to get the value of a socket.
Use "ShaderNodeCustomGroup", which are node groups with a fancy UI.
'''
import bpy
import nodeitems_builtins
import nodeitems_utils
from nodeitems_utils import NodeCategory, NodeItem
from bpy.types import Node, ShaderNodeCustomGroup, NodeSocket
# Cat... | seilotte/Blender-Stuff | Scripts/_extra/sei/sei-materials_node custom lerp.py | .py | 837bcf6cda5ab2af | 7.45 | 7 |
'''
WIP
Its impossible to get the value of a socket.
Use "ShaderNodeCustomGroup", which are node groups with a fancy UI.
'''
import bpy
import os
import nodeitems_builtins
import nodeitems_utils
from nodeitems_utils import NodeCategory, NodeItem
from bpy.types import Node, ShaderNodeCustomGroup, NodeSocke... | seilotte/Blender-Stuff | Scripts/_extra/sei/sei-materials_node run script.py | .py | a953c7c39495e288 | 7.45 | 7 |
'''
Developed in Blender 5.0.0.
WARNING:
This modifies the user settings!
There is not an undo option.
If things go wrong "Reset" the theme.
'''
import bpy
import mathutils
from bpy import context
#from mathutils import Color as c
DEBUG = False
TEXT_SIZE = 14
COLOURS = [
('FFFFFF', 'FFFFFF'), # tod... | seilotte/Blender-Stuff | Scripts/_extra/theme_setup.py | .py | 3d0cb3add707d12c | 7.45 | 7 |
import bpy
import mathutils
class ViewDirectionUpdater(bpy.types.Operator):
"""Update the combine xyz node with the current view direction"""
bl_idname = "view_direction_updater.modal_operator"
bl_label = "View Direction Updater"
_timer = None
def modal(self, context, event):
... | seilotte/Blender-Stuff | Scripts/_extra/view vector (modal).py | .py | 82f39f494d901e6a | 7.45 | 7 |
"""Keeping a meter read when things fail, three ways.
manual you rebuild the session yourself
automatic reopen_delays rebuilds it; connecting is still yours
none reopen_delays never gives up, so nothing is left to catch
Which exception means what is in the README under Exception. What ... | nbtk/momonga | tests/error_handling_example.py | .py | 33fe04042c2b9c25 | 8.16 | 20 |
"""
Integration tests for smart meter notification (sync API).
Requires a Wi-SUN USB dongle connected to a live smart meter.
Configure via environment variables:
MOMONGA_ROUTEB_ID Route-B ID
MOMONGA_ROUTEB_PASSWORD Password
MOMONGA_DEV_PATH Serial device path (e.g. /dev/ttyUSB0, COM3)
MOMONGA_... | nbtk/momonga | tests/test_notification.py | .py | 99413c9748f7f38e | 8.16 | 20 |
# Copyright Amazon.com, Inc. or its affiliates. All Rights Reserved.
from __future__ import annotations
from datetime import datetime
from enum import Enum
from typing import Any, Literal, TypedDict, Union
from typing_extensions import NotRequired
__all__ = [
"ManifestProperties",
"AssignedSession",
"Ba... | aws-deadline/deadline-cloud-worker-agent | src/deadline_worker_agent/api_models.py | .py | 79782d9f8c4e2d28 | 7.64 | 18 |
# Copyright Amazon.com, Inc. or its affiliates. All Rights Reserved.
from __future__ import annotations
from typing import Optional
from datetime import datetime, timezone
from threading import Lock
from botocore.session import Session as BotocoreSession, get_session as get_botocore_session
from botocore.credentials... | aws-deadline/deadline-cloud-worker-agent | src/deadline_worker_agent/aws_credentials/boto3_sessions.py | .py | 794ac511ccaea704 | 7.64 | 18 |
# Copyright Amazon.com, Inc. or its affiliates. All Rights Reserved.
from __future__ import annotations
import logging
from typing import Callable, Optional, TypeVar, Any, cast
from types import TracebackType
from datetime import datetime, timedelta, timezone
from threading import Lock, Timer
from .boto3_sessions im... | aws-deadline/deadline-cloud-worker-agent | src/deadline_worker_agent/aws_credentials/credentials_refresher.py | .py | 109e9e6fadbf6c62 | 7.64 | 18 |
# Copyright Amazon.com, Inc. or its affiliates. All Rights Reserved.
from __future__ import annotations
from dataclasses import dataclass
from datetime import datetime, timezone
from typing import Any, Optional, Type
import logging
import json
from typing_extensions import TypedDict
from botocore.credentials import... | aws-deadline/deadline-cloud-worker-agent | src/deadline_worker_agent/aws_credentials/temporary_credentials.py | .py | 4e9bab60d0ee3e88 | 7.64 | 18 |
# Copyright Amazon.com, Inc. or its affiliates. All Rights Reserved.
from __future__ import annotations
import logging
from typing import Any, cast
from botocore.utils import JSONFileCache
from ..boto import DEADLINE_BOTOCORE_CONFIG, Session
from ..config import Configuration
from ..aws.deadline import (
Deadlin... | aws-deadline/deadline-cloud-worker-agent | src/deadline_worker_agent/aws_credentials/worker_boto3_session.py | .py | b39670c0e52e8baf | 7.64 | 18 |
# Copyright Amazon.com, Inc. or its affiliates. All Rights Reserved.
from __future__ import annotations
import math
import random
from typing import Callable
from botocore.retries.standard import ExponentialBackoff
class NoOverflowExponentialBackoff(ExponentialBackoff):
"""This is the same exponential backoff a... | aws-deadline/deadline-cloud-worker-agent | src/deadline_worker_agent/boto/retries.py | .py | 87a39ec4ee9867a3 | 7.64 | 18 |
# Copyright Amazon.com, Inc. or its affiliates. All Rights Reserved.
from __future__ import annotations
import sys
import os
import getpass
import logging as _logging
from dataclasses import dataclass
from pathlib import Path
from typing import Any, Optional, Sequence, Tuple, cast, TYPE_CHECKING
from .._session_runt... | aws-deadline/deadline-cloud-worker-agent | src/deadline_worker_agent/config/config.py | .py | a652cc322b30bea6 | 7.64 | 18 |
# Copyright Amazon.com, Inc. or its affiliates. All Rights Reserved.
from __future__ import annotations
from typing import Optional, Tuple
from pathlib import Path
from pydantic.v1 import BaseSettings, Field
from pydantic.v1.env_settings import SettingsSourceCallable
from ..capabilities import Capabilities
from .._... | aws-deadline/deadline-cloud-worker-agent | src/deadline_worker_agent/config/settings.py | .py | 30b2c52119e80c27 | 7.64 | 18 |
# Copyright Amazon.com, Inc. or its affiliates. All Rights Reserved.
from __future__ import annotations
import re
from typing import Literal
from tomlkit import comment
from tomlkit.container import Container
from tomlkit.items import (
Bool,
Comment,
SingleKey,
String,
)
class CommentNotFoundError(... | aws-deadline/deadline-cloud-worker-agent | src/deadline_worker_agent/config/toml_comment.py | .py | 48610e7b0623e4ab | 7.64 | 18 |
# Copyright Amazon.com, Inc. or its affiliates. All Rights Reserved.
"""This module contains code for interacting with Linux capabilities.
See https://man7.org/linux/man-pages/man7/capabilities.7.html for details on this Linux kernel
feature.
"""
import ctypes
import os
import sys
from logging import getLogger
from ... | aws-deadline/deadline-cloud-worker-agent | src/deadline_worker_agent/linux/capabilities.py | .py | 29cf74ab72db293c | 7.64 | 18 |
# Copyright Amazon.com, Inc. or its affiliates. All Rights Reserved.
from __future__ import annotations
from logging import Logger, getLogger
from threading import Event, Thread
from typing import Any, Dict
import os
import psutil
import subprocess
from .log_messages import MetricsLogEvent, MetricsLogEventSubtype
... | aws-deadline/deadline-cloud-worker-agent | src/deadline_worker_agent/metrics.py | .py | 873c59430c725f15 | 7.64 | 18 |
# Copyright Amazon.com, Inc. or its affiliates. All Rights Reserved.
from __future__ import annotations
import subprocess
import sys
import getpass
from threading import Lock
from openjd.sessions import SessionUser, PosixSessionUser, WindowsSessionUser
from .log import LOGGER
from ..sessions import Session
logger =... | aws-deadline/deadline-cloud-worker-agent | src/deadline_worker_agent/scheduler/session_cleanup.py | .py | 268bb90428fe84f3 | 7.64 | 18 |
import numpy as np
import pandas as pd
import openturns as ot
from utils.core_utils import call_groq_api
from utils.constants import RETURN_INSTRUCTION
def compute_model_understanding(model, problem, model_code_str, is_pce_used=False, original_model_code_str=None, metamodel_str=None, language_model='groq'):
"""
... | MLegkovskis/UncertaintyCat | Streamlit_Backup/modules/model_understanding.py | .py | 6cd330227a110ecc | 7.48 | 8 |
# modules/monte_carlo.py
import numpy as np
import pandas as pd
import openturns as ot
from utils.model_utils import sample_inputs
def monte_carlo_simulation(model, problem, N=1000, seed=42):
"""Run Monte Carlo simulation."""
# Ensure problem is an OpenTURNS distribution
if not isinstance(problem, (ot.Dis... | MLegkovskis/UncertaintyCat | Streamlit_Backup/modules/monte_carlo.py | .py | 3380bb937e7e351b | 7.48 | 8 |
import numpy as np
import pandas as pd
import openturns as ot
from SALib.analyze import sobol
from utils.core_utils import call_groq_api, create_chat_interface
from utils.constants import RETURN_INSTRUCTION
import plotly.graph_objects as go
from plotly.subplots import make_subplots
import plotly.express as px
def comp... | MLegkovskis/UncertaintyCat | Streamlit_Backup/modules/sobol_sensitivity_analysis.py | .py | 944c3df48c25eba4 | 7.48 | 8 |
from typing import Literal, overload
import numpy as np
from numpy.typing import ArrayLike, NDArray
from scipy.signal import ShortTimeFFT, detrend, get_window
class OnlineHelper:
"""
Online helper class for efficient signal processing using sliding windows.
Implements an efficient sliding window approac... | iskandergaba/pyriodicity | src/pyriodicity/_internal/online_helper.py | .py | 91b504eb6de2123a | 7.48 | 8 |
from typing import Literal
import numpy as np
from numpy.typing import ArrayLike, NDArray
from scipy.signal import get_window, periodogram
def to_1d_array(x: ArrayLike) -> NDArray[np.floating]:
"""
Convert input to a contiguous 1-dimensional numpy array.
Parameters
----------
x : array_like
... | iskandergaba/pyriodicity | src/pyriodicity/_internal/utils.py | .py | 0315ae83d70c987c | 7.48 | 8 |
from typing import Literal
import numpy as np
from numpy.typing import ArrayLike, NDArray
from scipy.signal import find_peaks
from .._internal.online_helper import OnlineHelper
class OnlineACFPeriodicityDetector:
"""
Online Autocorrelation Function (ACF) based periodicity detector.
Detect periodicities... | iskandergaba/pyriodicity | src/pyriodicity/online/online_acf.py | .py | 35c7028bc6735395 | 7.48 | 8 |
from typing import Literal
import numpy as np
from numpy.typing import ArrayLike, NDArray
from .._internal.online_helper import OnlineHelper
class OnlineFFTPeriodicityDetector:
"""
Online Fast Fourier Transform (FFT) based periodicity detector.
Detect periodicities in a signal stream data using Sliding... | iskandergaba/pyriodicity | src/pyriodicity/online/online_fft.py | .py | f8661d05be4d5243 | 7.48 | 8 |
from typing import Literal
import numpy as np
from numpy.typing import ArrayLike, NDArray
from scipy.signal import detrend, find_peaks
from .._internal.utils import acf, apply_window, to_1d_array
class ACFPeriodicityDetector:
"""
Autocorrelation Function (ACF) based periodicity detector.
Find the perio... | iskandergaba/pyriodicity | src/pyriodicity/static/acf.py | .py | 55c79cc6ebd6022f | 7.48 | 8 |
from typing import Literal
import numpy as np
from numpy.typing import ArrayLike, NDArray
from scipy.signal import detrend, find_peaks, periodogram
from .._internal.utils import acf, apply_window, power_threshold, to_1d_array
class Autoperiod:
"""
Autoperiod periodicity detector.
Find the periods in a ... | iskandergaba/pyriodicity | src/pyriodicity/static/autoperiod.py | .py | aebf6732d979608c | 7.48 | 8 |
from typing import Literal
import numpy as np
from numpy.typing import ArrayLike, NDArray
from scipy.signal import butter, detrend, find_peaks, periodogram, sosfiltfilt
from .._internal.utils import acf, apply_window, power_threshold, to_1d_array
class CFDAutoperiod:
"""
CFD-Autoperiod periodicity detector.... | iskandergaba/pyriodicity | src/pyriodicity/static/cfd_autoperiod.py | .py | 4dcb542f9382dd86 | 7.48 | 8 |
from typing import Literal
import numpy as np
from numpy.typing import ArrayLike, NDArray
from scipy.signal import detrend
from .._internal.utils import apply_window, to_1d_array
class FFTPeriodicityDetector:
"""
Fast Fourier Transform (FFT) based periodicity detector.
Find the periods in a given signa... | iskandergaba/pyriodicity | src/pyriodicity/static/fft.py | .py | f4a1eefedb8c4d5c | 7.48 | 8 |
from collections import Counter
from typing import Literal
import numpy as np
from numpy.typing import ArrayLike, NDArray
from scipy.fft import dct
from scipy.optimize import fminbound
from scipy.signal import detrend, periodogram
from scipy.stats import gaussian_kde, zscore
from .._internal.utils import acf, apply_w... | iskandergaba/pyriodicity | src/pyriodicity/static/sazed.py | .py | 49d56f9bb625dd29 | 7.48 | 8 |
import requests
from okareo.checks import CheckOutputType, CheckResponse, CodeBasedCheck
class Check(CodeBasedCheck):
check_type = CheckOutputType.PASS_FAIL
@staticmethod
def evaluate(model_output: str) -> CheckResponse: # type: ignore[override]
"""Malicious check that makes network requests an... | okareo-ai/okareo-python-sdk | okareo_tests/checks/malicious_check.py | .py | 420b786bdab95233 | 7.98 | 8 |
import os
import random
import string
from typing import Any, Callable
import pytest
from okareo.common import BASE_URL
API_KEY = os.environ.get("OKAREO_API_KEY", "no-api-key")
class OkareoAPIhost:
def __init__(self, path: str, is_mock: bool) -> None:
self.path = path
self.is_mock = is_mock
d... | okareo-ai/okareo-python-sdk | okareo_tests/common.py | .py | b06c3bd86513def5 | 7.98 | 8 |
from uuid import UUID
import pytest
from okareo_tests.checks.sample_check import Check
from okareo_tests.common import API_KEY, default_project_id, random_string
from okareo import Okareo
from okareo_api_client.models import EvaluatorSpecRequest
@pytest.fixture(scope="module")
def okareo_client() -> Okareo:
ret... | okareo-ai/okareo-python-sdk | okareo_tests/test_checks.py | .py | a3fd07d2f8421bb3 | 7.98 | 8 |
"""Unit tests for CodeBasedCheck.check_config().
These run without a live server. The SDK no longer declares an output type for
code-based checks: check_config() emits only `code_contents`, and the server
infers pass/fail vs. score from the check's runtime return value at persist time.
"""
from okareo_tests.checks im... | okareo-ai/okareo-python-sdk | okareo_tests/test_code_check_config.py | .py | 8584868b43484c6e | 7.98 | 8 |
"""End-to-end integration tests for conversation ingestion.
This test validates the complete conversation monitoring flow:
1. Ingest conversations with audio and transcript
2. Verify datapoints are created
3. Verify monitors match and trigger checks
4. Validate transcript_fidelity check execution
"""
import base64
im... | okareo-ai/okareo-python-sdk | okareo_tests/test_conversation_ingestion_e2e.py | .py | 3ac6afaf87bc0759 | 7.98 | 8 |
"""E2E DTMF validation against the IVR testtarget, for both Twilio and Vonage.
The Driver places a phone call (via a Twilio or Vonage voice target) to a number
routed to okareo_server's opt-in IVR testtarget
(``/v0/voice/twilio/testtarget/ivr``). The Driver presses a random keypad code;
the testtarget captures it — fr... | okareo-ai/okareo-python-sdk | okareo_tests/test_integration_voice_dtmf.py | .py | b5fc377f5c20aad1 | 7.98 | 8 |
import random
from datetime import datetime
from typing import List, Union
from uuid import UUID
import pytest
from okareo_tests.common import API_KEY, random_string
from okareo import Okareo
from okareo.checks import CheckOutputType, ModelBasedCheck
from okareo.model_under_test import CustomModel, ModelInvocation
fr... | okareo-ai/okareo-python-sdk | okareo_tests/test_projects.py | .py | 132bc7a586508569 | 7.98 | 8 |
# Copyright 2024 Google LLC
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, ... | google/drjax | drjax/_src/api.py | .py | e0d664062277119e | 7.65 | 19 |
# Copyright 2024 Google LLC
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, ... | google/drjax | drjax/_src/api_test.py | .py | 609ac0e41b45b76e | 7.15 | 19 |
# Copyright 2024 Google LLC
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, ... | google/drjax | drjax/_src/impls.py | .py | ff7548e925577e8c | 7.65 | 19 |
# Copyright 2024 Google LLC
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, ... | google/drjax | drjax/_src/impls_test.py | .py | eecc786077d21982 | 7.15 | 19 |
# Copyright 2024 Google LLC
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, ... | google/drjax | drjax/_src/primitives.py | .py | 9a88748eb9d3dbe5 | 7.65 | 19 |
# Copyright 2024 Google LLC
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, ... | google/drjax | drjax/_src/primitives_test.py | .py | 22ca2d796f142b12 | 8.15 | 19 |
"""
DEVStone atomic model for the pyjevsim benchmark.
The DEVStone atomic has a single passive/active state machine:
- passive (initial, deadline = inf): waits for an input event.
- active (deadline = int_delay): on entry the model is committed to emit
output(s); on int_trans it returns to passive.
To make t... | eventsim/pyjevsim | benchmark/devstone/atomic.py | .py | bada960179af44e2 | 7.5 | 9 |
"""
DEVStone topology builders for pyjevsim.
Three canonical variants are implemented (LI, HI, HO). Each builds a flat
graph of registered atomics and couplings inside a SysExecutor:
Generator -> level_0 -> level_1 -> ... -> level_(depth-1) -> Sink
A "level" is a group of `width - 1` DEVStoneAtomic instances. The ... | eventsim/pyjevsim | benchmark/devstone/topology.py | .py | 2daf4772371b3949 | 7.5 | 9 |
"""Shared types and helpers for engine adapters.
A `RunResult` captures timing breakdown plus the static counts that come from
the DEVStone topology (atomics, couplings, transitions). Every engine adapter
returns the same dataclass so the cross-engine runner can tabulate results
without engine-specific knowledge.
"""
... | eventsim/pyjevsim | benchmark/engines/common.py | .py | 551fe373d5d8d961 | 7.5 | 9 |
"""Canonical DEVStone topology built on pyjevsim's SysExecutor.
The graph mirrors the *flattened* shape of the canonical xdevs DEVStone:
- Seeder fires exactly one event at t=0 then passivates.
- LI(d, w) has 1 + (d-1) * (w-1) atomics. Seeder feeds every atomic.
- HI adds an internal chain inside every non-inne... | eventsim/pyjevsim | benchmark/engines/pyjevsim/topology.py | .py | eb8fa7a461f3d2bc | 7.5 | 9 |
"""PythonPDEVS DEVStone runner (uses the minimal kernel)."""
import time
from benchmark.engines.common import RunResult
ENGINE_NAME = "pypdevs"
def is_available() -> bool:
try:
from pypdevs.minimal import Simulator # noqa: F401
return True
except Exception:
return False
def run(... | eventsim/pyjevsim | benchmark/engines/pypdevs/runner.py | .py | 462293e28b52d75e | 7.5 | 9 |
"""xdevs (xdevs.py) DEVStone runner.
Uses the canonical implementation that ships with `xdevs.examples.devstone`.
A single seed event is injected into the root model; the coordinator then
drains the event queue with `simulate_iters()`.
"""
import time
from benchmark.engines.common import RunResult
ENGINE_NAME = "x... | eventsim/pyjevsim | benchmark/engines/xdevs/runner.py | .py | d8c87f59019834b2 | 7.5 | 9 |
"""Memory-bounded 3-D convolution for the CPU inference path.
PyTorch's CPU ``conv3d`` lowers to an im2col matrix multiplication and
materialises the column buffer for the *whole* volume in a single allocation of
``C_in * prod(kernel) * prod(output_shape)`` elements. At the 1.5 mm warp
template grid (padded to 128x14... | ChristianGaser/T1Prep | src/t1prep/_conv_chunk.py | .py | e5c8221e15550ff2 | 7.52 | 10 |
"""Compute-device selection for the deepmriprep stages.
``deepmriprep`` decides its device once, at import, with
DEVICE = 'cuda' if torch.cuda.is_available() else 'cpu'
so on Apple Silicon every stage it owns — affine registration, nogm
segmentation, warping, atlas registration — pins itself to the CPU no matter... | ChristianGaser/T1Prep | src/t1prep/_device.py | .py | a42d50adcaa3ee05 | 7.52 | 10 |
"""Colormaps shared by the surface and volume viewers.
Both build the same lookup tables, so they live here rather than in either
viewer — cat_surf_view imports cat_vol_view, which would make the reverse
direction circular.
"""
from __future__ import annotations
import math
from typing import List, Optional, Tuple
... | ChristianGaser/T1Prep | src/t1prep/gui/colormaps.py | .py | 3b08bcac1947773f | 7.52 | 10 |
import sys
import unittest
from pathlib import Path
# Allow running tests without installing the package (repo checkout / editable dev)
_ROOT = Path(__file__).resolve().parents[1]
_SRC = _ROOT / "src"
if str(_SRC) not in sys.path:
sys.path.insert(0, str(_SRC))
try:
import torch
import torch.nn.functional ... | ChristianGaser/T1Prep | tests/test_conv_chunk.py | .py | b45403c17f77783a | 8.02 | 10 |
import logging
import sys
import unittest
from pathlib import Path
import numpy as np
import nibabel as nib
# Allow running tests without installing the package (repo checkout / editable dev)
_ROOT = Path(__file__).resolve().parents[1]
_SRC = _ROOT / "src"
if str(_SRC) not in sys.path:
sys.path.insert(0, str(_SR... | ChristianGaser/T1Prep | tests/test_metrics.py | .py | 9575cac6742d87d4 | 8.02 | 10 |
"""Tests for :mod:`t1prep._segment_utils`."""
import numpy as np
import pytest
import torch
from t1prep._segment_utils import scale_intensity
def _reference(x, low=0.5, high=99.5):
"""Percentile rescaling with log-compressed top tail, computed on the host.
Deliberately written with plain NumPy rather than ... | ChristianGaser/T1Prep | tests/test_segment_utils.py | .py | a9e362aafeca4972 | 8.02 | 10 |
"""Security helpers for guarding privileged API endpoints."""
from __future__ import annotations
import os
from typing import Callable, Optional
from flask import Response, request
OperatorAuthFormatter = Callable[..., Response]
# Headers / environment variable names that can supply the operator token.
OPERATOR_TO... | futuroptimist/token.place | api/security.py | .py | 984f2b52d5b018b4 | 7.45 | 7 |
"""
Encryption manager for token.place API v1
"""
import json
import base64
import logging
from typing import Dict, Any, Union, Optional
from encrypt import generate_keys, encrypt, decrypt
try:
from config import RSA_KEY_SIZE
except ImportError:
# Default value if config.py is not available
RSA_KEY_SIZE ... | futuroptimist/token.place | api/v1/encryption.py | .py | acbdd45984be33a2 | 7.45 | 7 |
"""
Model management for token.place API v1
This module provides model information and management.
"""
import os
import random
import logging
import time
from pathlib import Path
from typing import Any, Dict, Iterable, List, Optional
from utils.llm.model_profiles import (
CANONICAL_API_V1_MODEL_ID,
build_mode... | futuroptimist/token.place | api/v1/models.py | .py | bcd714e53d497339 | 7.45 | 7 |
"""
Simplified CLI chat client for token.place
Uses the CryptoClient helper to handle encryption and API communication
"""
import argparse
import sys
# Import our CryptoClient
from utils.crypto_helpers import CryptoClient
def clear_screen():
"""Clear the terminal screen without spawning a shell.
Skips outp... | futuroptimist/token.place | client_simplified.py | .py | 9b52534bf0a8cf1b | 7.45 | 7 |
#!/usr/bin/env python3
"""Build a local token.place desktop installer, mirroring desktop-release.yml.
One command produces a real packaged app/installer (not `tauri dev`), so
packaging-only bugs (embedded runtime PATH handling, packaged import-root
resolution, resource bundling) reproduce locally instead of only surfa... | futuroptimist/token.place | desktop-tauri/scripts/build_local.py | .py | 17f77fd225304c1b | 7.45 | 7 |
"""Helpers for desktop llama-cpp-python GPU packaging/install contract."""
from __future__ import annotations
import sys
from dataclasses import dataclass
from pathlib import Path
from typing import Any
LLAMA_CPP_PYPI_INDEX_URL = "https://pypi.org/simple"
LLAMA_CPP_PREBUILT_WHEEL_INDEX_BASE = "https://abetlen.github... | futuroptimist/token.place | desktop-tauri/src-tauri/python/desktop_gpu_packaging.py | .py | 77bf52311fb31602 | 7.45 | 7 |
"""CLI application for the project.
A dependency-free ``argparse`` root for the ``hwid`` command. It
exposes the same ``version`` / ``info`` commands as the Typer variant and hangs
every enabled non-primary component off the root as a lazily-imported subcommand
— ``hwid interactive`` (TUI), ``hwid web``, ... —
rather ... | hasansezertasan/hwid | src/hwid/cli/app.py | .py | 54fc369921292446 | 7.5 | 9 |
"""Core functionality for getting hardware IDs."""
# Copyright (c) 2023 Hasan Sezer Taşan
# Licensed under the MIT License
import re
from sys import platform
from hwid.core.exceptions import InvalidHWIDError, UnsupportedOSError
from hwid.core.impl import darwin, linux, win32
__all__ = ["get_hwid", "validate_hwid"]
... | hasansezertasan/hwid | src/hwid/core/resolution.py | .py | 41440d7e84d2cd80 | 7.5 | 9 |
"""Test cases for the hwid argparse root."""
from __future__ import annotations
import importlib
from importlib.metadata import Distribution, PackageNotFoundError
import pytest
from hwid.cli.app import app
# Import the module object (not the re-exported callable) so the monkeypatch
# below patches ``Distribution``... | hasansezertasan/hwid | tests/cli/test_app.py | .py | 927992f91d3f336e | 8 | 9 |
"""Tests for :mod:`hwid.core.impl.darwin`; ``subprocess`` is mocked on any host."""
from __future__ import annotations
from typing import TYPE_CHECKING
from hwid.core.impl import darwin
if TYPE_CHECKING:
from pytest_mock import MockerFixture
VALID_HWID = "D486629F-0026-55CC-988A-C086D16715C1"
def test_darwin... | hasansezertasan/hwid | tests/core/impl/test_darwin.py | .py | 8dff4c63e1795681 | 8 | 9 |
"""Tests for :mod:`hwid.core.impl.linux`; ``subprocess`` is mocked on any host."""
from __future__ import annotations
import subprocess # noqa: S404
from typing import TYPE_CHECKING
import pytest
from hwid.core.impl import linux
if TYPE_CHECKING:
from pytest_mock import MockerFixture
VALID_HWID = "D486629F-0... | hasansezertasan/hwid | tests/core/impl/test_linux.py | .py | 9fa0397274c3674e | 8 | 9 |
"""Tests for :mod:`hwid.core.impl.win32`; ``subprocess`` is mocked on any host."""
from __future__ import annotations
from typing import TYPE_CHECKING
from hwid.core.impl import win32
if TYPE_CHECKING:
from pytest_mock import MockerFixture
VALID_HWID = "D486629F-0026-55CC-988A-C086D16715C1"
def test_win32_st... | hasansezertasan/hwid | tests/core/impl/test_win32.py | .py | 51043086e8c23963 | 7 | 9 |
"""Tests for :mod:`hwid.core.resolution` -- validation and platform dispatch."""
from __future__ import annotations
from typing import TYPE_CHECKING
import pytest
from hwid.core.exceptions import InvalidHWIDError, UnsupportedOSError
from hwid.core.resolution import get_hwid, validate_hwid
if TYPE_CHECKING:
fro... | hasansezertasan/hwid | tests/core/test_resolution.py | .py | 2af791b0e5999603 | 8 | 9 |
"""Tests for the package's runnable entrypoint (``python -m hwid``)."""
import importlib
def test_main_is_callable() -> None:
"""The package exposes a callable ``main()`` entrypoint.
Every standalone-executable build (launcher / freezer / compiler — see
ADR-007) targets ``hwid.__main__:main``, so this p... | hasansezertasan/hwid | tests/test_main.py | .py | e821617704ccc037 | 7 | 9 |
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