text stringlengths 185 73.3k | repo stringlengths 7 100 | path stringlengths 4 146 | language stringclasses 7
values | hash stringlengths 16 16 | score float64 7 8.5 | stars int64 0 237k |
|---|---|---|---|---|---|---|
import logging
from collections.abc import Mapping
from pprint import pformat
from typing import Annotated, Any
from django.conf import settings
from mpt_extension_sdk.core.extension import Extension
from mpt_extension_sdk.core.security import JWTAuth
from mpt_extension_sdk.mpt_http.base import MPTClient
from mpt_exte... | softwareone-platform/swo-adobe-vipm-extension | adobe_vipm/extension.py | .py | 12091accf50d06f4 | 7.6 | 15 |
import logging
import traceback
from adobe_vipm.adobe.errors import AdobeTransportError
from adobe_vipm.flows.constants import OrderType
from adobe_vipm.flows.fulfillment.change import fulfill_change_order
from adobe_vipm.flows.fulfillment.configuration import fulfill_configuration_order
from adobe_vipm.flows.fulfillm... | softwareone-platform/swo-adobe-vipm-extension | adobe_vipm/flows/fulfillment/base.py | .py | 7a561cf8e38a4221 | 7.6 | 15 |
"""
This module contains the logic to implement the configuration fulfillment flow.
It exposes a single function that is the entrypoint for configuration order
processing.
"""
import logging
from adobe_vipm.adobe.client import get_adobe_client
from adobe_vipm.adobe.errors import AdobeError, SubscriptionUpdateError
f... | softwareone-platform/swo-adobe-vipm-extension | adobe_vipm/flows/fulfillment/configuration.py | .py | 5f218c43eed86bce | 7.6 | 15 |
"""
This module contains the logic to implement the purchase fulfillment flow.
It exposes a single function that is the entrypoint for purchase order
processing.
"""
import logging
from mpt_extension_sdk.mpt_http.mpt import update_agreement, update_order
from adobe_vipm.adobe.client import get_adobe_client
from ado... | softwareone-platform/swo-adobe-vipm-extension | adobe_vipm/flows/fulfillment/purchase.py | .py | b86818e8bea2dbbc | 7.6 | 15 |
import logging
from mpt_extension_sdk.mpt_http.mpt import update_agreement, update_order
from adobe_vipm.adobe.client import get_adobe_client
from adobe_vipm.adobe.constants import AdobeOrderStatus, ResellerChangeAction
from adobe_vipm.adobe.errors import AdobeAPIError
from adobe_vipm.airtable.models import get_trans... | softwareone-platform/swo-adobe-vipm-extension | adobe_vipm/flows/fulfillment/reseller_transfer.py | .py | 18a008d96b101452 | 7.6 | 15 |
"""
This module contains the logic to implement the switch fulfillment flow.
It exposes a single function that is the entrypoint for change orders
that carry a mid-term upgrade (SWITCH) payload computed from an Adobe
recommendation.
"""
import logging
from mpt_extension_sdk.mpt_http.mpt import update_order
from ado... | softwareone-platform/swo-adobe-vipm-extension | adobe_vipm/flows/fulfillment/switch.py | .py | 72830c6d4aee26bf | 7.6 | 15 |
"""
This module contains the logic to implement the termination fulfillment flow.
It exposes a single function that is the entrypoint for termination order
processing.
"""
import logging
from adobe_vipm.adobe.client import get_adobe_client
from adobe_vipm.adobe.constants import AdobeErrorCode
from adobe_vipm.adobe.e... | softwareone-platform/swo-adobe-vipm-extension | adobe_vipm/flows/fulfillment/termination.py | .py | 5b18b6d07348fbd5 | 7.6 | 15 |
import logging
from django.conf import settings
from mpt_extension_sdk.mpt_http.base import MPTClient
from mpt_extension_sdk.mpt_http.mpt import get_agreements_by_query
from adobe_vipm.adobe.constants import ThreeYearCommitmentStatus
from adobe_vipm.flows.constants import Param
logger = logging.getLogger(__name__)
... | softwareone-platform/swo-adobe-vipm-extension | adobe_vipm/flows/mpt.py | .py | 0a3359b5292d4110 | 7.6 | 15 |
import copy
import datetime as dt
import json
import logging
from pathlib import Path
from urllib.parse import urljoin
import requests
from django.conf import settings
logger = logging.getLogger(__name__)
TOKEN_CACHE_FILE = Path.home() / ".nav-token-cache.json"
def get_token_from_disk() -> str | None:
"""Retri... | softwareone-platform/swo-adobe-vipm-extension | adobe_vipm/flows/nav.py | .py | 194377f78ab958b3 | 7.6 | 15 |
from abc import ABC, abstractmethod
from collections.abc import Callable
from mpt_extension_sdk.mpt_http.base import MPTClient
from adobe_vipm.flows.context import Context
NextStep = Callable[[MPTClient, Context], None]
# TODO: why it is still here and not in SDK???
class Step(ABC):
@abstractmethod
def __c... | softwareone-platform/swo-adobe-vipm-extension | adobe_vipm/flows/pipeline.py | .py | 9be611299c14d662 | 7.6 | 15 |
from mpt_extension_sdk.mpt_http import mpt
from adobe_vipm.airtable import models
from adobe_vipm.flows import utils as flows_utils
from adobe_vipm.utils import get_commitment_start_date
class PriceManager:
"""
PriceManager class to manage the prices to update the agreement or subscription.
Attributes:
... | softwareone-platform/swo-adobe-vipm-extension | adobe_vipm/flows/sync/price_manager.py | .py | 37b24ea0fdba54c7 | 7.6 | 15 |
"""
Evolutionary Utilities
"""
import glob
import json
import os
import sys
from typing import List, Optional
import numpy as np
from absl import logging
class Individual:
"""Single Individual in an Island"""
def __init__(
self,
island_id: int,
generation_id: int,
counter_id... | RishiHazra/Revolve | evolutionary_utils/entities.py | .py | ac79f939b72db6c5 | 7.66 | 20 |
import os
import sys
sys.path.append(os.environ["ROOT_PATH"])
from rewards_database import RevolveDatabase, EurekaDatabase
from modules import *
import utils
import prompts
from evolutionary_utils.custom_environment import CustomEnvironment
import absl.logging as logging
from functools import partial
from utils import... | RishiHazra/Revolve | main.py | .py | 7168618f1f3a9633 | 7.66 | 20 |
"""
Various stages of individual generation, training, and evaluation:
1. Reward Function Generation
2. Policy Training
3. Policy Evaluation
"""
import concurrent.futures
import json
import multiprocessing
import os
import time
from typing import Tuple, Optional, Dict
import absl.logging as logging
import hydra
impor... | RishiHazra/Revolve | modules.py | .py | a66ae505f195227d | 7.66 | 20 |
import os
import random
import sys
from typing import Tuple, List, Dict
import numpy as np
from absl import logging
from evolutionary_utils.entities import Island
def normalized(x: List[float], temp: float = 1):
x = np.array(x)
return np.exp(x / temp) / np.sum(np.exp(x / temp), axis=0)
class RevolveDataba... | RishiHazra/Revolve | rewards_database.py | .py | 84917d92b129fe07 | 7.66 | 20 |
import json
def read_json_lines(file_path):
data = []
try:
with open(file_path, "r") as file:
for line in file:
if line.strip(): # Ensuring the line is not empty
data.append(json.loads(line))
except FileNotFoundError:
print(f"Error: The file... | RishiHazra/Revolve | rl_agent/add_files.py | .py | b0f9c953ca1e0176 | 7.66 | 20 |
import inspect
import os
import random
import math
import fcntl
from copy import copy, deepcopy
from collections import Counter
from typing import Optional, Callable, List, Tuple, Dict
import torch
import numpy as np
class DataLogger:
def __init__(self, log_file_path: str):
self.log_file_path = log_file_... | RishiHazra/Revolve | utils.py | .py | 8e649dfa65efba9c | 7.66 | 20 |
from tensorflow import keras
import numpy as np
import os
class Load_data_RNA(keras.utils.Sequence):
"""generate data in sequence mode for training the neural network"""
def __init__(self, batch_size, N_batches, path, files_list, chunck_size, labels, batch_loading, max_seq_len):
self.batch... | mem3nto0/ModiDeC-RNA-modification-classifier | Load_data_for_training_V2.py | .py | b5b7e8720928e264 | 7.57 | 13 |
from typing import Annotated
import dagger
from dagger import Doc, function, object_type
@object_type
class Chart:
"""chart"""
source: dagger.Directory
helm: dagger.Helm
uuid: str
@function
async def push(
self,
registry: Annotated[str, Doc("Helm registry")] = "",
v... | GitGuardian/ggbridge | dagger/src/ggbridge/chart.py | .py | a2c19e47746ac781 | 7.45 | 7 |
from typing import Annotated
import dagger
from dagger import Doc, Name, dag, function, object_type
from .repository import Repository
@object_type
class Image:
"""image"""
source: dagger.Directory
repository: Repository
container_: dagger.Container
apko: dagger.Apko
cosign: dagger.Cosign
... | GitGuardian/ggbridge | dagger/src/ggbridge/image.py | .py | 40602434d9425f15 | 7.45 | 7 |
from typing import Annotated
import dagger
from dagger import Doc, Name, function, object_type
@object_type
class Repository:
"""repository"""
source: dagger.Directory
melange: dagger.Melange
@function
async def container(
self,
) -> dagger.Container:
"""Return container"""
... | GitGuardian/ggbridge | dagger/src/ggbridge/repository.py | .py | 5a34a27614443880 | 7.45 | 7 |
# Imports
import os
import tempfile
import time
from multiprocessing import get_context
from multiprocessing.context import SpawnProcess
from stouputils.lock import LockFifo, RLockFifo
def _safe_append(path: str, line: str) -> None:
time.sleep(1) # Simulate some delay to increase chance of interleaving if locks fa... | Stoupy51/stouputils | examples/lock.py | .py | fd5c90fd71f31115 | 7.5 | 9 |
""" Regenerate the mechanical parts of the package layout: re-export lists and lazy import markers.
Explicit re-exports are what makes PEP 810 lazy imports work, since a star import resolves every
deferred name at once. Maintaining those lists by hand is the price, so this script derives them
from the source instead: ... | Stoupy51/stouputils | scripts/sync_api.py | .py | c54e651719526263 | 7.5 | 9 |
""" Deprecated functions and classes.
::deprecated:: vX.Y.Z - Description of deprecation reason and alternative (if applicable)
This module contains deprecated functions that have been replaced by new implementations
These functions are retained for backward compatibility and will log deprecation warnings when used.
"... | Stoupy51/stouputils | stouputils/_deprecated.py | .py | 1652b8c30517bf12 | 7.5 | 9 |
# Lazy imports (PEP 810), ignored before Python 3.15
from ..lazy import ALWAYS_LAZY
__lazy_modules__ = ALWAYS_LAZY
# Imports
from typing import TYPE_CHECKING
from ..config import StouputilsConfig as Cfg
from ..decorators.timing import measure_time
from ..io.path import clean_path, relative_path
from ..print.message... | Stoupy51/stouputils | stouputils/all_doctests/launch.py | .py | 993cade4c9677d05 | 8 | 9 |
""" Consistency check for packages that re-export their submodules explicitly.
Explicit re-exports are what makes PEP 810 lazy imports possible, since a star import resolves
every deferred name at once. The cost is that a new public function is easy to forget in the
parent package, so this module compares each submodu... | Stoupy51/stouputils | stouputils/all_doctests/reexports.py | .py | 6624be9f3e42ddfc | 8 | 9 |
"""
This module is used to run all the doctests for all the modules in a given directory.
- :py:func:`launch_tests` - Main function to launch tests for all modules in the given directory.
- :py:func:`test_module_with_progress` - Test a module with testmod and measure the time taken with progress printing.
.. image:: ... | Stoupy51/stouputils | stouputils/all_doctests/utils.py | .py | 6e687906c63f7513 | 7 | 9 |
""" Common utilities shared by documentation generators (Sphinx, Zensical, etc.).
This module contains functions and helpers that are used by multiple documentation
backends, avoiding code duplication.
"""
# Lazy imports (PEP 810), ignored before Python 3.15
from ...lazy import ALWAYS_LAZY
__lazy_modules__ = ALWAYS_L... | Stoupy51/stouputils | stouputils/applications/automatic_docs/common.py | .py | 96785f6b489d5e5a | 7.5 | 9 |
""" Docstring normalization applied before Sphinx parses the output of autodoc.
reStructuredText only recognizes a doctest block when it starts a new block, which means a blank line
must separate it from the prose introducing it.
A docstring written without that blank line gets folded into the preceding paragraph, so ... | Stoupy51/stouputils | stouputils/applications/automatic_docs/docstring.py | .py | bbbc21b1b1efe1fe | 7.5 | 9 |
""" Orchestration of a documentation build: lay out the folders, write the generated files, then run Sphinx.
``sphinx_docs`` is the only entry point most projects ever call.
Every step it performs is a parameter, so a project needing a different landing page or a different build command
replaces that one callable inst... | Stoupy51/stouputils | stouputils/applications/automatic_docs/sphinx/builder.py | .py | 6a8eb8e288d0cb68 | 7.5 | 9 |
""" Generation of the ``docs/source/conf.py`` file Sphinx reads.
The file is produced as text rather than imported from a template, because a fair part of it is decided by the
caller's arguments: which forge hosts the sources, which theme renders them, and which pygments styles colour them.
"""
# Lazy imports (PEP 810... | Stoupy51/stouputils | stouputils/applications/automatic_docs/sphinx/conf_file.py | .py | 3c51cd09a14842fe | 7.5 | 9 |
""" Code forge URL conventions, used to link a documented object back to its source.
Every forge agrees that a URL needs a repository, a branch and a path, and no two of them agree on the order.
This module holds that knowledge in one table so the rest of the generator never has to care.
"""
# Lazy imports (PEP 810), ... | Stoupy51/stouputils | stouputils/applications/automatic_docs/sphinx/forges.py | .py | d9c9da3aa7bbad27 | 7.5 | 9 |
""" Editor-grade syntax highlighting for the Python code blocks of the generated documentation.
Two pieces are needed, and neither works without the other:
:mod:`.styles` supplies the VS Code palettes, and :mod:`.semantics` supplies the token distinctions those palettes
expect but that Pygments' Python lexer does not ... | Stoupy51/stouputils | stouputils/applications/automatic_docs/sphinx/highlighting/__init__.py | .py | ed4952834cd9b6fb | 7.5 | 9 |
""" Recovery of the token distinctions Pygments' Python lexer does not make.
An editor colours ``task: str = "all"`` in three different ways because its grammar knows that ``task`` is a
variable, ``str`` a type and ``"all"`` a string.
Pygments only knows the third: it tags an identifier as ``Name.Function`` or ``Name.... | Stoupy51/stouputils | stouputils/applications/automatic_docs/sphinx/highlighting/semantics.py | .py | c7fa7ed3b1aa3253 | 7.5 | 9 |
""" Theme, syntax highlighting and stylesheet concerns of the generated documentation.
Pygments' Python lexer is coarse: it only tags an identifier as ``Name.Function`` or ``Name.Class`` when a literal
``def`` or ``class`` introduces it, and emits a bare ``Name`` for every call, attribute, argument and variable.
A pal... | Stoupy51/stouputils | stouputils/applications/automatic_docs/sphinx/theming.py | .py | 50a82a6fe21751dc | 7.5 | 9 |
""" Zensical documentation generation utilities.
This module provides a comprehensive set of utilities for automatically generating
and managing documentation for Python projects using **Zensical** (a modern static
site generator based on MkDocs Material) and **mkdocstrings** for API reference
generation from docstrin... | Stoupy51/stouputils | stouputils/applications/automatic_docs/zensical.py | .py | bee0d1411a6cdc33 | 7.5 | 9 |
# Lazy imports (PEP 810), ignored before Python 3.15
from ..lazy import ALWAYS_LAZY
__lazy_modules__ = ALWAYS_LAZY
# Imports
import fnmatch
import os
from zipfile import ZIP_DEFLATED, ZipFile, ZipInfo
from ..decorators import LogLevels, handle_error
from ..io.path import clean_path, super_copy
# Function that mak... | Stoupy51/stouputils | stouputils/archive/creation.py | .py | 25aa52ae4d8f06ee | 7.5 | 9 |
# Lazy imports (PEP 810), ignored before Python 3.15
from ...lazy import ALWAYS_LAZY
__lazy_modules__ = ALWAYS_LAZY
# Imports
import contextlib
import os
from dataclasses import dataclass, field
from typing import ClassVar
from zipfile import ZIP_DEFLATED, ZipFile
from ...decorators.error_handling import handle_err... | Stoupy51/stouputils | stouputils/archive/repair/repair.py | .py | 08ec1445749643af | 7.5 | 9 |
""" Byte level scanning of a zip archive whose structure cannot be trusted.
The standard library refuses to open a damaged archive, so every offset here is treated as a hint:
signatures are searched for, headers are bounds checked, and anything unreadable is reported as None.
"""
# Lazy imports (PEP 810), ignored befo... | Stoupy51/stouputils | stouputils/archive/repair/scanner.py | .py | 29862e256aace6e5 | 7.5 | 9 |
#!/usr/bin/env python3
# Copyright 2025 Canonical Ltd.
# See LICENSE file for licensing details.
"""Aggregate results from test matrix into a tabular form."""
import json
import sys
import pandas as pd
FOOTNOTES = """
Legend:
✅: All tests passed for this dimension and this tox environment
⚠️: Some tests failed wh... | canonical/spark-k8s-bundle | .github/scripts/aggregate_results.py | .py | 831e2bff8107eed1 | 7.42 | 6 |
#! /usr/bin/env python
import os
import shutil
import subprocess
import tempfile
import sys
import logging
import argparse
# Configure logging
logging.basicConfig(
level=logging.INFO,
format='%(asctime)s - %(levelname)s - %(message)s',
datefmt='%Y-%m-%d %H:%M:%S'
)
SPHINX_DIR = os.path.join(os.getcwd(), ... | canonical/spark-k8s-bundle | docs/.sphinx/get_vale_conf.py | .py | 93e608f47cce3164 | 7.42 | 6 |
#!/usr/bin/env python3
# Copyright 2024 Canonical Ltd.
# See LICENSE file for licensing details.
"""Azure storage module."""
import os
from dataclasses import dataclass
from itertools import islice
from azure.storage.blob import BlobServiceClient
from spark_test.core import ObjectStorageUnit
@dataclass
class Crede... | canonical/spark-k8s-bundle | python/spark_test/core/azure_storage.py | .py | f1350c632e213f00 | 7.92 | 6 |
#!/usr/bin/env python3
# Copyright 2024 Canonical Ltd.
# See LICENSE file for licensing details.
"""The base classes for bundle backend."""
import enum
import subprocess
from abc import abstractmethod
from pathlib import Path
from spark8t.utils import WithLogging
class BundleBackendEnum(str, enum.Enum):
"""The... | canonical/spark-k8s-bundle | python/spark_test/core/bundle/__init__.py | .py | 39c489bd1cd5ab3c | 7.92 | 6 |
#!/usr/bin/env python3
# Copyright 2024 Canonical Ltd.
# See LICENSE file for licensing details.
"""Terraform backend to apply the bundle."""
import json
import shutil
import tempfile
from pathlib import Path
from . import BundleBackend, BundleBackendEnum
class TerraformBackend(BundleBackend):
"""Terraform bun... | canonical/spark-k8s-bundle | python/spark_test/core/bundle/terraform.py | .py | d5fbd136ccbfd010 | 7.92 | 6 |
# Copyright 2024 Canonical Ltd.
# See LICENSE file for licensing details.
"""Kyuubi module."""
import tempfile
from contextlib import closing, contextmanager
from pathlib import Path
from typing import Generator, Type, TypeAlias
from impala.dbapi import connect
from impala.hiveserver2 import HiveServer2Connection as ... | canonical/spark-k8s-bundle | python/spark_test/core/kyuubi.py | .py | dc8bffb4d59232ca | 7.92 | 6 |
# Copyright 2024 Canonical Ltd.
# See LICENSE file for licensing details.
"""Pod module."""
import json
import subprocess
from functools import cached_property
from pathlib import Path
from typing import Dict, Iterator, List, cast
from lightkube import Client, KubeConfig
from lightkube.resources import core_v1
from ... | canonical/spark-k8s-bundle | python/spark_test/core/pod.py | .py | 5eac88d96d795d1c | 7.92 | 6 |
#!/usr/bin/env python3
# Copyright 2024 Canonical Ltd.
# See LICENSE file for licensing details.
"""S3 module."""
from __future__ import annotations
import logging
import os
from dataclasses import dataclass
from typing import TYPE_CHECKING, Any
from boto3.session import Session
from botocore.client import Config
fr... | canonical/spark-k8s-bundle | python/spark_test/core/s3.py | .py | 25af0b6d6d44b493 | 7.92 | 6 |
#!/usr/bin/env python3
# Copyright 2024 Canonical Ltd.
# See LICENSE file for licensing details.
"""Azure storage fixtures."""
import os
import uuid
import pytest
from spark_test.core.azure_storage import Container, Credentials
@pytest.fixture(scope="session")
def azure_credentials():
"""Azure storage credenti... | canonical/spark-k8s-bundle | python/spark_test/fixtures/azure_storage.py | .py | 65b15d40d0af1792 | 7.92 | 6 |
#!/usr/bin/env python3
# Copyright 2024 Canonical Ltd.
# See LICENSE file for licensing details.
"""K8s fixtures."""
import os
import time
from pathlib import Path
from typing import Iterable
import pytest
from lightkube import KubeConfig
from lightkube.resources.core_v1 import Namespace
from spark8t.domain import De... | canonical/spark-k8s-bundle | python/spark_test/fixtures/k8s.py | .py | 90799ee62d0e52a1 | 7.92 | 6 |
#!/usr/bin/env python3
# Copyright 2024 Canonical Ltd.
# See LICENSE file for licensing details.
"""Pod fixtures."""
import pytest
from spark_test.core.pod import Pod
from spark_test.fixtures.k8s import kubeconfig, namespace # noqa
from spark_test.fixtures.service_account import service_account # noqa
@pytest.fix... | canonical/spark-k8s-bundle | python/spark_test/fixtures/pod.py | .py | d61876db6c960663 | 7.92 | 6 |
#!/usr/bin/env python3
# Copyright 2024 Canonical Ltd.
# See LICENSE file for licensing details.
"""S3 fixtures."""
import os
import subprocess
import uuid
import pytest
from spark_test import BINS, PKG_DIR
from spark_test.core.s3 import Bucket, Credentials
@pytest.fixture(scope="session")
def credentials():
"... | canonical/spark-k8s-bundle | python/spark_test/fixtures/s3.py | .py | 8ddbb9d28e901315 | 7.92 | 6 |
# Copyright 2024 Canonical Ltd.
# See LICENSE file for licensing details.
"""Service account fixtures."""
import uuid
import pytest
from spark8t.domain import ServiceAccount
from spark8t.registry.k8s import K8sServiceAccountRegistry
from spark8t.utils import PropertyFile
from spark_test.fixtures.azure_storage import... | canonical/spark-k8s-bundle | python/spark_test/fixtures/service_account.py | .py | 6dda0bee2d6787f9 | 7.92 | 6 |
import shutil
import pytest
def pytest_addoption(parser):
"""Add CLI options to pytest."""
parser.addoption(
"--bench-sf",
choices=[
"sf1",
"sf10",
"sf30",
"sf100",
"sf300",
"sf1000",
"sf3000",
"sf... | canonical/spark-k8s-bundle | python/tests/integration/bench/conftest.py | .py | 9a26e497067cecb7 | 7.92 | 6 |
#!/usr/bin/env python3
# Copyright 2025 Canonical Ltd.
# See LICENSE file for licensing details.
import logging
import time
from collections import defaultdict
from datetime import date
from subprocess import check_output
from typing import cast
import jubilant
import polars as pl
import pytest
from great_tables impor... | canonical/spark-k8s-bundle | python/tests/integration/bench/test_benchmark_kyuubi.py | .py | 90f09f2df97c4f8b | 7.92 | 6 |
# Copyright 2024 Canonical Ltd.
# See LICENSE file for licensing details.
from __future__ import annotations
import ast
import json
import logging
import re
import shutil
import subprocess
import urllib.parse
from contextlib import contextmanager
from pathlib import Path
from typing import cast
import httpx
import ju... | canonical/spark-k8s-bundle | python/tests/integration/helpers.py | .py | fcf9b4cbf4dc2b9f | 7.92 | 6 |
#!/usr/bin/env python3
# Copyright 2024 Canonical Ltd.
# See LICENSE file for licensing details.
import logging
import jubilant
import pytest
logger = logging.getLogger(__name__)
@pytest.mark.skip_if_deployed
def test_deploy_bundle(spark_bundle: list[str]) -> None:
"""Deploy bundle."""
deployed_applicatio... | canonical/spark-k8s-bundle | python/tests/integration/test_bundle.py | .py | 00b59ad1e360cca9 | 7.92 | 6 |
#!/usr/bin/env python3
# Copyright 2024 Canonical Ltd.
# See LICENSE file for licensing details.
from __future__ import annotations
import logging
from typing import cast
import jubilant
import psycopg2
import pytest
from tenacity import Retrying, stop_after_attempt, wait_fixed
from spark_test.core.kyuubi import Ky... | canonical/spark-k8s-bundle | python/tests/integration/test_kyuubi.py | .py | 79c622948f96216c | 7.92 | 6 |
import logging
import re
import subprocess
from pathlib import Path
from typing import cast
import boto3.session
import httpx
import jubilant
import pytest
from azure.storage.blob import BlobServiceClient
from botocore.client import Config
from tenacity import Retrying, stop_after_attempt, wait_fixed
from spark_test.... | canonical/spark-k8s-bundle | python/tests/integration/test_spark_job.py | .py | a54c7936bd51e9a1 | 7.92 | 6 |
"""Integration tests types module."""
from typing import ContextManager, Protocol, TypedDict
class PortForwarder(Protocol):
"""Type stub for the port_forward fixture."""
def __call__(
self, *, pod: str, port: int, namespace: str, on_port: int | None = None
) -> ContextManager:
"""Create ... | canonical/spark-k8s-bundle | python/tests/integration/types.py | .py | 2af1cbf639e4be02 | 7.42 | 6 |
#!/usr/bin/env python3
# Copyright 2026 Canonical Ltd.
# See LICENSE file for licensing details.
"""Extract shell code blocks from MyST Markdown tutorial files.
Usage
-----
# Auto-discover: process all .md files with spread metadata in a directory.
python3 tests/tutorial/extract_commands.py docs/tutorial/ tes... | canonical/spark-k8s-bundle | python/tests/tutorial/extract_commands.py | .py | 1e2afcf2c1cccd46 | 7.92 | 6 |
"""Audio File Manager which keeps an audio file open until a request in another file is made.
This workflow avoids closing/opening a same file repeatedly.
"""
from __future__ import annotations
from pathlib import Path
from typing import TYPE_CHECKING
from osekit.audio_backend.mseed_backend import MSeedBackend
from... | Project-OSmOSE/OSEkit | src/osekit/audio_backend/audio_file_manager.py | .py | 46a456d0a0d20d55 | 7.57 | 13 |
from os import PathLike
import numpy as np
def _require_obspy() -> None:
try:
import obspy # noqa: PLC0415, F401
except ImportError as e:
msg = "MSEED support requires the optional dependency 'obspy' "
"Install with: ``pip install osekit[mseed]``. "
"If you're on windows and ... | Project-OSmOSE/OSEkit | src/osekit/audio_backend/mseed_backend.py | .py | 7336acb2966e825e | 7.57 | 13 |
from os import PathLike
import numpy as np
import soundfile as sf
class SoundFileBackend:
"""Backend for reading conventional audio files (WAV, FLAC, MP3...)."""
def __init__(self) -> None:
"""Instantiate a SoundFileBackend."""
self._file: sf.SoundFile | None = None
def close(self) -> N... | Project-OSmOSE/OSEkit | src/osekit/audio_backend/soundfile_backend.py | .py | 2581508ba53d6d58 | 7.57 | 13 |
"""``AudioDataset`` is a collection of ``AudioData`` objects.
``AudioDataset`` is a collection of ``AudioData``, with methods
that simplify repeated operations on the audio data.
"""
from __future__ import annotations
import logging
from typing import TYPE_CHECKING, Literal, Self
from osekit.core.audio_data import ... | Project-OSmOSE/OSEkit | src/osekit/core/audio_dataset.py | .py | 3238a1d7c4e1e42f | 7.57 | 13 |
"""Audio file associated with timestamps."""
from __future__ import annotations
import typing
from typing import TYPE_CHECKING
from osekit.config import TIMESTAMP_FORMATS_EXPORTED_FILES
from osekit.utils.timestamp import strptime_from_text
if TYPE_CHECKING:
from os import PathLike
from pathlib import Path
... | Project-OSmOSE/OSEkit | src/osekit/core/audio_file.py | .py | d563ab262131ebe7 | 7.57 | 13 |
"""``AudioItem`` corresponding to a portion of an ``AudioFile`` object."""
from __future__ import annotations
from collections.abc import Generator
from typing import TYPE_CHECKING
import numpy as np
from osekit.core.audio_file import AudioFile
from osekit.core.base_item import BaseItem
if TYPE_CHECKING:
from ... | Project-OSmOSE/OSEkit | src/osekit/core/audio_item.py | .py | f7838acf54d08b57 | 7.57 | 13 |
"""``BaseData``: Base class for the Data objects.
Data corresponds to data scattered through different Files.
The data is accessed via an Item object per File.
"""
from __future__ import annotations
import itertools
from abc import ABC, abstractmethod
from pathlib import Path
from typing import Self, TypeVar
import... | Project-OSmOSE/OSEkit | src/osekit/core/base_data.py | .py | 3cfb00900806a42a | 7.57 | 13 |
"""``BaseFile``: Base class for the File objects.
A File object associates file-written data to timestamps.
"""
from __future__ import annotations
import typing
from abc import ABC, abstractmethod
from typing import TYPE_CHECKING, Self
from osekit.config import (
TIMESTAMP_FORMAT_EXPORTED_FILES_LOCALIZED,
T... | Project-OSmOSE/OSEkit | src/osekit/core/base_file.py | .py | 4b6000a313153592 | 7.57 | 13 |
"""``BaseItem``: Base class for the Item objects.
Items correspond to a portion of a File object.
"""
from __future__ import annotations
from abc import ABC
from typing import TYPE_CHECKING, TypeVar
import numpy as np
from osekit.core.base_file import BaseFile
from osekit.core.event import Event
if TYPE_CHECKING:... | Project-OSmOSE/OSEkit | src/osekit/core/base_item.py | .py | 99229158798f3385 | 7.57 | 13 |
"""The Detection class represents a detection made on APLOSE."""
import math
from dataclasses import dataclass
from pathlib import Path
from typing import Any, Literal, Self
import pandas as pd
from matplotlib.patches import Rectangle
from pandas import Timestamp
from osekit.core.event import Event
from osekit.utils... | Project-OSmOSE/OSEkit | src/osekit/core/detection.py | .py | 52c557493af007da | 7.57 | 13 |
"""Event class."""
from __future__ import annotations
import bisect
import copy
from dataclasses import dataclass, field
from typing import TYPE_CHECKING, TypeVar
from osekit.utils.timestamp import localize_timestamp
if TYPE_CHECKING:
from pandas import Timedelta, Timestamp
@dataclass
class Event:
"""Even... | Project-OSmOSE/OSEkit | src/osekit/core/event.py | .py | c2a31dfb4080522b | 7.57 | 13 |
"""Custom frequency scales for plotting spectrograms.
The custom scale is formed from a list of ``ScaleParts``, which assign a
frequency range to a range on the scale.
Provided ``ScaleParts`` should cover the whole scale (from 0% to 100%).
Such Scale can then be passed to the ``SpectroData.plot()`` method for the
spe... | Project-OSmOSE/OSEkit | src/osekit/core/frequency_scale.py | .py | e8ae2c4821add473 | 7.57 | 13 |
"""The instrument class represent the audio acquisition chain.
It embeds the technical properties of the hydrophone,
the gain applied to the measured signal etc.
"""
from __future__ import annotations
import numpy as np
class Instrument:
"""Represent the audio acquisition chain.
It embeds the technical pr... | Project-OSmOSE/OSEkit | src/osekit/core/instrument.py | .py | 1f7feb910976d43b | 7.57 | 13 |
"""Functions used to serialize the API objects to json files."""
import json
import os
from pathlib import Path, PurePosixPath, PureWindowsPath # noqa: F401
from typing import Literal
from osekit.utils.path import is_absolute
def absolute_to_relative(
target_path: os.PathLike | str,
root_path: os.PathLike ... | Project-OSmOSE/OSEkit | src/osekit/core/json_serializer.py | .py | f66c1053af08e6b8 | 7.57 | 13 |
"""LTASData is a special form of SpectroData.
The Sx values from a ``LTASData`` object are computed recursively.
LTAS should be preferred in cases where the audio is really long.
In that case, the corresponding number of time bins (``scipy.ShortTimeFTT.p_nums``) is
too long for the whole Sx spectrum to be computed onc... | Project-OSmOSE/OSEkit | src/osekit/core/ltas_data.py | .py | af0abf9c6af5fc40 | 7.57 | 13 |
"""``LTASDataset`` is a collection of ``LTASData`` objects.
``LTASDataset`` is a collection of ``LTASData``, with methods
that simplify repeated operations on the ``LTASData``.
"""
from __future__ import annotations
from pathlib import Path
from typing import TYPE_CHECKING
from scipy.signal import ShortTimeFFT
fro... | Project-OSmOSE/OSEkit | src/osekit/core/ltas_dataset.py | .py | c2af954acadc16ae | 7.57 | 13 |
"""Spectro file associated with timestamps.
Spectro files are ``npz`` files with ``Time`` and ``Sxx`` arrays.
Metadata (``time_resolution``) are stored as separate arrays.
"""
from __future__ import annotations
import typing
from typing import TYPE_CHECKING
import numpy as np
from pandas import Timestamp
from scipy... | Project-OSmOSE/OSEkit | src/osekit/core/spectro_file.py | .py | ce9cf63590fae6d6 | 8.07 | 13 |
"""``SpectroItem`` corresponding to a portion of a ``SpectroFile`` object."""
from __future__ import annotations
from typing import TYPE_CHECKING
import numpy as np
from osekit.core.base_item import BaseItem
from osekit.core.spectro_file import SpectroFile
if TYPE_CHECKING:
from pandas import Timedelta, Timest... | Project-OSmOSE/OSEkit | src/osekit/core/spectro_item.py | .py | f4a3b54629d7edf3 | 8.07 | 13 |
"""Logging context used by util functions, settable using a context manager.
The OSmOSE package instantiates a LoggingContext on initialize in the config module.
Utils functions log records to this ``LoggingContext.logger`` logger.
The global logger can be replaced with a context manager:
>>> from osekit.config impor... | Project-OSmOSE/OSEkit | src/osekit/logging_context.py | .py | fb11f2e2432a6329 | 7.57 | 13 |
from __future__ import annotations
from enum import Flag, auto
from typing import TYPE_CHECKING, Literal
from osekit.utils.audio import Butterworth, Normalization
if TYPE_CHECKING:
from pandas import Timedelta, Timestamp
from scipy.signal import ShortTimeFFT
from osekit.core.frequency_scale import Scale... | Project-OSmOSE/OSEkit | src/osekit/public/transform.py | .py | 802b32aefe56bed0 | 7.57 | 13 |
from __future__ import annotations
import dataclasses
import enum
from collections.abc import Iterable
from typing import Literal, Self
import numpy as np
import soxr
from pandas import Timedelta
from scipy import signal
from osekit.config import (
resample_quality_settings,
)
def generate_sample_audio(
nb... | Project-OSmOSE/OSEkit | src/osekit/utils/audio.py | .py | dcdf3d2b7efdc1c8 | 7.57 | 13 |
"""The job module provides classes that run transforms on a remote server.
If a ``JobBuilder`` is attached to a Public API ``Project``,
the transforms will run through jobs, with writting/submitting of ``pbs`` files.
"""
from __future__ import annotations
import subprocess
from dataclasses import dataclass
from enu... | Project-OSmOSE/OSEkit | src/osekit/utils/job.py | .py | 045950e9cdc24f71 | 7.57 | 13 |
# Copyright The OpenTelemetry Authors
# SPDX-License-Identifier: Apache-2.0
import logging
import os
import sys
import traceback
import _pytest._code
import _pytest.skipping
import pytest
from opentelemetry import trace
from opentelemetry.sdk.resources import SERVICE_NAME, Resource
from opentelemetry.sdk.trace import... | kuisathaverat/pytest_otel | src/pytest_otel/__init__.py | .py | ab23fbd873cebed8 | 7.92 | 6 |
import pytest
import json
import time
import os
import socket
import subprocess
SPAN_KIND_INTERNAL = 1
SPAN_KIND_SERVER = 2
STATUS_CODE_OK = 1
STATUS_CODE_ERROR = 2
def is_portListening(host, port):
"""Check a port in a host is liostening"""
a_socket = socket.socket(socket.AF_INET, socket.SOCK_STREAM)
l... | kuisathaverat/pytest_otel | tests/it/utils/__init__.py | .py | e382465e95f9f3cd | 7.92 | 6 |
from pathlib import Path
from mex.common.assets.base import BaseAssetsConnector
from mex.common.settings import BaseSettings
class FilesystemAssetsConnector(BaseAssetsConnector):
"""Filesystem-based implementation of assets connector."""
def __init__(self) -> None:
"""Create a new connector instance... | robert-koch-institut/mex-common | mex/common/assets/filesystem.py | .py | 7f82c483f0654e1f | 7.54 | 11 |
from typing import TYPE_CHECKING, Final
from mex.common.types import AssetsConnectorType
if TYPE_CHECKING:
from mex.common.assets.base import BaseAssetsConnector
_CONNECTOR_REGISTRY: Final[dict[AssetsConnectorType, type["BaseAssetsConnector"]]] = {}
def register_assets_connector(
key: AssetsConnectorType, ... | robert-koch-institut/mex-common | mex/common/assets/registry.py | .py | fa3513362826fe90 | 7.54 | 11 |
import sys
import warnings
from bdb import BdbQuit
from collections.abc import Callable
from functools import partial
from traceback import format_exc
import click
from click import Command, Option
from click.exceptions import Abort, Exit
from mex.common.connector import CONNECTOR_STORE
from mex.common.logging import... | robert-koch-institut/mex-common | mex/common/cli.py | .py | ecd0e18e9f413a64 | 7.54 | 11 |
from abc import ABCMeta, abstractmethod
from contextlib import ExitStack, closing
from typing import Self, cast, final
from mex.common.context import SingletonStore
from mex.common.transform import dromedary_to_snake
class _ConnectorStore(SingletonStore["BaseConnector"]):
"""Thin wrapper for storing one singleto... | robert-koch-institut/mex-common | mex/common/connector/base.py | .py | 6f64a48eab9f8f3f | 7.54 | 11 |
import json
import time
from abc import abstractmethod
from collections.abc import Mapping
from typing import Any, Literal, cast
import backoff
import requests
from requests import RequestException, Response, codes
from requests.exceptions import (
ConnectTimeout,
ProxyError,
ReadTimeout,
SSLError,
)
... | robert-koch-institut/mex-common | mex/common/connector/http.py | .py | e6eb3b6234e23caa | 7.54 | 11 |
from collections.abc import Callable
from mex.common.exceptions import TimedRequestException
def bounded_backoff(
min_time: float, max_time: float
) -> Callable[[TimedRequestException], int | float]:
"""Get a function to calculate a bounded backoff time.
Args:
min_time: Minimum backoff time in s... | robert-koch-institut/mex-common | mex/common/connector/utils.py | .py | 4704f3627d5ca1a5 | 7.54 | 11 |
from collections.abc import Iterator
from typing import Generic, TypeVar
_SingletonT = TypeVar("_SingletonT")
class SingletonStore(Generic[_SingletonT]):
"""Thin wrapper for storing one singleton instance per class.
Instances are kept in a plain dict, so a store is shared by all threads that
access it a... | robert-koch-institut/mex-common | mex/common/context.py | .py | 34509914f49d4fe7 | 7.54 | 11 |
import time
from typing import Any, Self
from requests.exceptions import RequestException
class MExError(Exception):
"""Base class for generic exceptions."""
def __str__(self) -> str:
"""Format this exception as a string for logging."""
args = ", ".join(str(a) for a in self.args) or "N/A"
... | robert-koch-institut/mex-common | mex/common/exceptions.py | .py | 3a251a8e3c431c4e | 7.54 | 11 |
from functools import lru_cache
from mex.common.backend_api.connector import BackendApiConnector
from mex.common.identity.base import BaseProvider
from mex.common.identity.models import Identity
from mex.common.types import Identifier, MergedPrimarySourceIdentifier
IDENTITY_CACHE_SIZE = 5000
class BackendApiIdentit... | robert-koch-institut/mex-common | mex/common/identity/backend_api.py | .py | 7c7352e550acec6a | 7.54 | 11 |
from abc import abstractmethod
from mex.common.connector import BaseConnector
from mex.common.identity.models import Identity
from mex.common.types import AnyMergedIdentifier, MergedPrimarySourceIdentifier
class BaseProvider(BaseConnector):
"""Base class to define the interface of identity providers."""
@ab... | robert-koch-institut/mex-common | mex/common/identity/base.py | .py | e1486b21f29bd03d | 7.54 | 11 |
import hashlib
from mex.common.identity.base import BaseProvider
from mex.common.identity.models import Identity
from mex.common.models import (
MEX_PRIMARY_SOURCE_IDENTIFIER,
MEX_PRIMARY_SOURCE_IDENTIFIER_IN_PRIMARY_SOURCE,
MEX_PRIMARY_SOURCE_STABLE_TARGET_ID,
)
from mex.common.types import (
AnyMerge... | robert-koch-institut/mex-common | mex/common/identity/memory.py | .py | 609c940a577a3a52 | 7.54 | 11 |
from typing import TYPE_CHECKING, Final
from mex.common.types import IdentityProvider
if TYPE_CHECKING:
from mex.common.identity.base import BaseProvider
_PROVIDER_REGISTRY: Final[dict[IdentityProvider, type["BaseProvider"]]] = {}
def register_provider(
key: IdentityProvider, provider_cls: type["BaseProvid... | robert-koch-institut/mex-common | mex/common/identity/registry.py | .py | 5f923728d78c6a5f | 7.54 | 11 |
import re
import ssl
from functools import lru_cache
from typing import Any, cast
from urllib.parse import urlsplit
import backoff
from ldap3 import Connection, Server, Tls
from ldap3.core.exceptions import LDAPExceptionError, LDAPSocketSendError
from mex.common.connector import BaseConnector
from mex.common.exceptio... | robert-koch-institut/mex-common | mex/common/ldap/connector.py | .py | c78060ee4aa19396 | 7.54 | 11 |
from collections import defaultdict
from collections.abc import Iterable
from mex.common.identity import get_provider
from mex.common.ldap.models import LDAPPerson, LDAPPersonWithQuery
from mex.common.types import MergedPersonIdentifier, MergedPrimarySourceIdentifier
def get_merged_ids_by_employee_ids(
persons: ... | robert-koch-institut/mex-common | mex/common/ldap/extract.py | .py | 384157eb8db4f320 | 7.54 | 11 |
from typing import Any, Final, Literal, get_args
from pydantic import UUID4, TypeAdapter
from mex.common.models import BaseModel
class LDAPActor(BaseModel):
"""Model class for generic LDAP accounts."""
objectGUID: UUID4
sAMAccountName: str | None = None
mail: list[str] = []
class LDAPPerson(LDAPA... | robert-koch-institut/mex-common | mex/common/ldap/models.py | .py | 0afa682d11b40042 | 7.54 | 11 |
import re
from collections.abc import Iterable
from dataclasses import dataclass
from functools import lru_cache
from mex.common.ldap.models import (
AnyLDAPActor,
LDAPFunctionalAccount,
LDAPPerson,
LDAPPersonWithQuery,
)
from mex.common.logging import logger
from mex.common.models import (
Extract... | robert-koch-institut/mex-common | mex/common/ldap/transform.py | .py | ccc59aa87b37f5cf | 7.54 | 11 |
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