text stringlengths 185 73.3k | repo stringlengths 7 100 | path stringlengths 4 146 | language stringclasses 7
values | hash stringlengths 16 16 | score float64 7 8.5 | stars int64 0 237k |
|---|---|---|---|---|---|---|
from __future__ import annotations
from typing import TYPE_CHECKING, cast
from django.db.models import Model
from django.urls import reverse
from django.utils.html import format_html
from django.utils.safestring import SafeString, mark_safe
from .conf import app_settings
if TYPE_CHECKING:
from typing import Typ... | browniebroke/django-admin-helpers | src/django_admin_helpers/links.py | .py | 4a9ab510f09351a6 | 7.42 | 6 |
from __future__ import annotations
import logging
from typing import ClassVar
from django.db.models import Model, QuerySet
from django.http import HttpRequest
logger = logging.getLogger(__name__)
class FilesDeleteMixin:
"""
Mixin for ``ModelAdmin`` classes to delete files along with model instances.
B... | browniebroke/django-admin-helpers | src/django_admin_helpers/mixins.py | .py | dad1563bbad4c960 | 7.42 | 6 |
"""
Created on Fri Sept 15 16:00:00 2024
@author: Anna Grim
@email: anna.grim@alleninstitute.org
Connfiguration classes used for setting storing parameters used in neuron
proofreading pipelines.
"""
from abc import ABC
from dataclasses import asdict, dataclass
from typing import Tuple
import os
from neuron_proofr... | AllenInstitute/neuron-proofreader | src/neuron_proofreader/configs.py | .py | fb9e82c89d78bee5 | 7.5 | 9 |
"""
Created on Wed July 2 14:00:00 2025
@author: Anna Grim
@email: anna.grim@alleninstitute.org
Implementation of FragmentsGraph, a subclass of SkeletonGraph that represents
a collection of neuron fragments and provides proofreading-specific operations.
"""
from tqdm import tqdm
import networkx as nx
import numpy ... | AllenInstitute/neuron-proofreader | src/neuron_proofreader/fragments_graph.py | .py | ec4f318b8dfca340 | 7.5 | 9 |
"""
Created on Sat November 04 15:30:00 2023
@author: Anna Grim
@email: anna.grim@alleninstitute.org
Implements a class that extracts subgraphs from a graph in order to create
batches suitable for GNN input.
"""
from collections import deque
import numpy as np
from neuron_proofreader.proposal_graph import Proposa... | AllenInstitute/neuron-proofreader | src/neuron_proofreader/machine_learning/subgraph_sampler.py | .py | 936a41e310b11031 | 7.5 | 9 |
"""
Created on Wed July 25 16:00:00 2025
@author: Anna Grim
@email: anna.grim@alleninstitute.org
Code for a custom class for training neural networks to perform neuron
proofreading classification tasks.
"""
import json
from datetime import datetime
from torch.nn.functional import sigmoid
from torch.nn.parallel imp... | AllenInstitute/neuron-proofreader | src/neuron_proofreader/machine_learning/train.py | .py | 33a97ab600fb49a4 | 7.5 | 9 |
"""
Created on Sun Aug 3 16:00:00 2026
@author: Anna Grim
@email: anna.grim@alleninstitute.org
Merge proofreading classes. MergeProofreader is an abstract base that defines
a search / remove template: each subclass implements search() to identify merge
site nodes, and the base __call__ derives xyz coordinates and rem... | AllenInstitute/neuron-proofreader | src/neuron_proofreader/merge_proofreading/merge_inference.py | .py | 359bc6f47e3bbbde | 7.5 | 9 |
"""
Created on Fri April 11 11:00:00 2024
@author: Anna Grim
@email: anna.grim@alleninstitute.org
Graph neural network architectures that classify edge proposals.
"""
from torch import nn
from torch_geometric import nn as nn_geometric
import ast
import torch
import torch.nn.init as init
from neuron_proofreader.mo... | AllenInstitute/neuron-proofreader | src/neuron_proofreader/models/gnn_models.py | .py | a243b2004d3a0b33 | 7.5 | 9 |
"""
Created on Thu Nov 20 5:00:00 2025
@author: Anna Grim
@email: anna.grim@alleninstitute.org
Code for point cloud models that perform machine learning tasks within
NeuronProofreader pipelines.
"""
import numpy as np
import torch
import torch.nn as nn
import torch.nn.functional as F
from neuron_proofreader.models... | AllenInstitute/neuron-proofreader | src/neuron_proofreader/models/point_cloud_models.py | .py | ca0a427a150d554d | 7.5 | 9 |
"""
Created on Fri Aug 15 12:00:00 2026
@author: Anna Grim
@email: anna.grim@alleninstitute.org
Models used for merge and split proofreading tasks.
"""
import torch
import torch.nn as nn
from arborist.models.arborist import Arborist
from neuron_proofreader.models.new_vision_models import CNN3D, ViT3D
from neuron_pr... | AllenInstitute/neuron-proofreader | src/neuron_proofreader/models/proofreading_models.py | .py | 07c52fb6277e9bd5 | 7.5 | 9 |
"""
Created on Mon Aug 17 12:00:00 2026
@author: Anna Grim
@email: anna.grim@alleninstitute.org
Code for vision models that perform image classification tasks within
NeuronProofreader pipelines.
"""
from einops import rearrange
import torch
import torch.nn as nn
from neuron_proofreader.utils.ml_util import FeedFo... | AllenInstitute/neuron-proofreader | src/neuron_proofreader/models/vision_models.py | .py | 86b1d14587f5e7dd | 7.5 | 9 |
"""
Created on Fri June 13 16:00:00 2026
@author: Anna Grim
@email: anna.grim@alleninstitute.org
Code for running full neuron proofreading pipeline, including both split and
merge detection and correction.
"""
from copy import copy
from time import time
import numpy as np
import os
from neuron_proofreader.merge_p... | AllenInstitute/neuron-proofreader | src/neuron_proofreader/proofreading_pipeline.py | .py | 2b6c9bd2c93b0a04 | 7.5 | 9 |
"""
Created on Sat July 15 9:00:00 2023
@author: Anna Grim
@email: anna.grim@alleninstitute.org
Implementation of a custom subclass of Networkx.Graph called "ProposalGraph".
After initializing an instance of this subclass, the graph is built by reading
and processing SWC files (i.e. neuron fragments). It then stores ... | AllenInstitute/neuron-proofreader | src/neuron_proofreader/proposal_graph.py | .py | 3a97d57d35d6d99a | 7.5 | 9 |
"""
Created on Fri March 1 16:00:00 2024
@author: Anna Grim
@email: anna.grim@alleninstitute.org
This code identifies proposals between fragments that align with the same
ground truth skeleton and are structurally consistent.
Algorithm
---------
1. Find fragments aligned to a single ground truth skeleto... | AllenInstitute/neuron-proofreader | src/neuron_proofreader/split_proofreading/groundtruth_generation.py | .py | 1ccea3a41f62f1dd | 7.5 | 9 |
"""
Created on Sat July 15 9:00:00 2023
@author: Anna Grim
@email: anna.grim@alleninstitute.org
Code that generates edge proposals for a given graph.
"""
from scipy.spatial import KDTree
from tqdm import tqdm
import numpy as np
from neuron_proofreader.utils import geometry_util
class ProposalGenerator:
"""
... | AllenInstitute/neuron-proofreader | src/neuron_proofreader/split_proofreading/proposal_generation.py | .py | 189cf593a48a5b86 | 7.5 | 9 |
"""
Created on Fri April 11 11:00:00 2024
@author: Anna Grim
@email: anna.grim@alleninstitute.org
Implementation of dataset objects that contain graphs and facilitate feature
generation for training and inference in split-correction tasks.
"""
from concurrent.futures import ThreadPoolExecutor
from queue import Queu... | AllenInstitute/neuron-proofreader | src/neuron_proofreader/split_proofreading/split_datasets.py | .py | 7a366b05b5fa0163 | 7.5 | 9 |
"""
Created on Fri November 03 15:30:00 2023
@author: Anna Grim
@email: anna.grim@alleninstitute.org
Code that executes the full split correction pipeline.
Inference Pipeline:
1. Proposal Generation
Generate proposals for potential connections between fragments.
2. Proposal Classific... | AllenInstitute/neuron-proofreader | src/neuron_proofreader/split_proofreading/split_inference.py | .py | 6aa51e38be590cef | 7.5 | 9 |
"""
Created on Fri Aug 15 12:00:00 2026
@author: Anna Grim
@email: anna.grim@alleninstitute.org
Graph utility routines for converting Arborist skeleton subgraphs into
data structures consumed by graph-based models.
"""
from collections import defaultdict
import numpy as np
from arborist.data.datasets import TreeS... | AllenInstitute/neuron-proofreader | src/neuron_proofreader/utils/graph_util.py | .py | c017c9e1a65cc70b | 7.5 | 9 |
"""
Created on Sat November 04 15:30:00 2023
@author: Anna Grim
@email: anna.grim@alleninstitute.org
Helper routines for training and performing inference with machine learning
models.
"""
import torch
import torch.nn as nn
import torch.nn.functional as F
from sklearn.metrics import precision_recall_curve
# --- A... | AllenInstitute/neuron-proofreader | src/neuron_proofreader/utils/ml_util.py | .py | 457cd2b5333e3fd5 | 7.5 | 9 |
"""
Created on Sat Sep 30 10:00:00 2025
@author: Anna Grim
@email: anna.grim@alleninstitute.org
Code for visualizing SkeletonGraphs.
"""
import networkx as nx
import numpy as np
import plotly.colors as plc
import plotly.graph_objects as go
def visualize(graph):
"""
Visualizes the given graph using Plotly.... | AllenInstitute/neuron-proofreader | src/neuron_proofreader/visualization.py | .py | aa556403e8dde096 | 7.5 | 9 |
"""listenbrainz API Client."""
from __future__ import annotations
import asyncio
from dataclasses import dataclass
from homeassistant.core import HomeAssistant
from liblistenbrainz import ListenBrainz, Listen
from liblistenbrainz.errors import (
ListenBrainzAPIException,
ListenBrainzException,
InvalidAu... | Weissnix4711/hass-listenbrainz | custom_components/listenbrainz/api.py | .py | 85d6f2ca6403fc7b | 7.48 | 8 |
"""DataUpdateCoordinator for listenbrainz."""
from __future__ import annotations
from datetime import timedelta
from homeassistant.config_entries import ConfigEntry
from homeassistant.core import HomeAssistant
from homeassistant.helpers.update_coordinator import (
DataUpdateCoordinator,
UpdateFailed,
)
from ... | Weissnix4711/hass-listenbrainz | custom_components/listenbrainz/coordinator.py | .py | 4caff8e2b9251a45 | 7.48 | 8 |
"""ListenBrainzEntity class."""
from __future__ import annotations
from homeassistant.components.sensor import SensorEntityDescription
from homeassistant.helpers.entity import DeviceInfo
from homeassistant.helpers.update_coordinator import CoordinatorEntity
from homeassistant.helpers.device_registry import DeviceEntry... | Weissnix4711/hass-listenbrainz | custom_components/listenbrainz/entity.py | .py | c63d37910a91bf4f | 7.48 | 8 |
"""Media player platform for listenbrainz."""
from __future__ import annotations
from dataclasses import dataclass
from homeassistant.core import callback
from homeassistant.components.media_player import (
MediaPlayerEntity,
MediaPlayerEntityDescription,
MediaPlayerDeviceClass,
MediaPlayerEntityFeatur... | Weissnix4711/hass-listenbrainz | custom_components/listenbrainz/media_player.py | .py | ad9a0560a60d5df0 | 7.48 | 8 |
"""Sensor platform for listenbrainz."""
from __future__ import annotations
from collections.abc import Callable
from dataclasses import dataclass
from homeassistant.components.sensor import SensorEntity, SensorEntityDescription
from homeassistant.helpers.typing import StateType
from .api import ListenBrainzUserData
f... | Weissnix4711/hass-listenbrainz | custom_components/listenbrainz/sensor.py | .py | beb9b0e49b4709dc | 7.48 | 8 |
# https://github.com/scikit-build/scikit-build/blob/d06e8724e51885d1d147accfc9f65dd84f1ae7f7/skbuild/cmaker.py より
import configparser
import contextlib
import itertools
import os
import sys
import sysconfig
from pathlib import Path
def get_python_version() -> str:
"""Get version associated with the current python... | shiguredo/sora-python-sdk | pypath.py | .py | 5de426e8860f765f | 7.63 | 17 |
#!/usr/bin/env python3
"""
A wrapper script for pytest that checks for memory leaks in nanobind code.
This script runs pytest with the specified arguments and captures the standard output.
It then checks if the string "nanobind: leaked" appears in the output, which would
indicate a memory leak in nanobind code.
Usage... | shiguredo/sora-python-sdk | scripts/pytest_memory_leak_checker.py | .py | a0d63441e4f6cd5b | 7.13 | 17 |
# 以下のコマンドで LLVM 付きでテストを実行できる
# lldb-18 --batch -o 'command script import pytest_with_llvm.py' -o 'test'
import sys
import time
import lldb
def test(debugger, command, result, internal_dict):
debugger.HandleCommand("settings set target.process.follow-fork-mode child")
target = debugger.CreateTargetWithFileAn... | shiguredo/sora-python-sdk | scripts/pytest_with_llvm.py | .py | be864af9d010637c | 7.13 | 17 |
import importlib.metadata
import os
import time
import uuid
from pathlib import Path
from typing import Any
import jwt
import pytest
# sora_sdk から SoraLoggingSeverity をインポート
from sora_sdk import SoraLoggingSeverity
class Settings:
def __init__(self):
# .env ファイルから環境変数を読み込む
self._load_env_file(".... | shiguredo/sora-python-sdk | tests/conftest.py | .py | 7146920c483abf31 | 8.13 | 17 |
"""
- サイマルキャストは期待しているビットレート以上が出ていれば良いと判断する
- 厳密なビットレートの計算はしない
"""
# 期待値の 30% 以上のビットレートが出ていれば良いと判断する
MIN_TARGET_BITRATE_RATIO = 0.3
def default_video_bit_rate(video_codec_type, width, height) -> int:
if video_codec_type in ["VP8", "H264"]:
match (width, height):
case (1920, 1080):
... | shiguredo/sora-python-sdk | tests/simulcast.py | .py | 765bc805e966efb1 | 8.13 | 17 |
import os
import time
import pytest
from api import request_key_frame_api
from client import (
SoraClient,
SoraRole,
codec_type_string_to_codec_type,
is_codec_supported,
)
from simulcast import default_video_bit_rate, expect_target_bitrate
from sora_sdk import (
SoraVideoCodecImplementation,
S... | shiguredo/sora-python-sdk | tests/test_amd_amf.py | .py | 76c43d6b55d88b86 | 7.13 | 17 |
from __future__ import annotations
import threading
from threading import Event
import numpy
from client import SoraClient, SoraRole
from conftest import Settings
from numpy.typing import NDArray
from sora_sdk import SoraAudioSink, SoraMediaTrack
def test_audio_sink_callbacks(settings: Settings) -> None:
"""音声... | shiguredo/sora-python-sdk | tests/test_audio_sink_callbacks.py | .py | 164fabe8abeb91b0 | 8.13 | 17 |
import threading
import time
from client import SoraClient, SoraRole
def _wait_audio_sink(client: SoraClient, timeout_s: float = 30.0):
"""on_track が発火して audio sink が生成されるまでポーリングして待つ"""
deadline = time.monotonic() + timeout_s
while time.monotonic() < deadline:
# _on_track の audio 分岐で _audio_sink ... | shiguredo/sora-python-sdk | tests/test_audio_sink_read_gil.py | .py | f1a7d49e052f554e | 8.13 | 17 |
"""
create_audio_source が不正な sample_rate / channels を ValueError で弾くことを検証する。
10 ms バッファは sample_rate / 100 で決まる。sample_rate < 100 や channels == 0 だと
バッファサイズが 0 になり、後続処理で未定義動作になり得る。
"""
from __future__ import annotations
import pytest
from sora_sdk import Sora
def test_create_audio_source_rejects_sample_rate_below... | shiguredo/sora-python-sdk | tests/test_audio_source_invalid_params.py | .py | f101f6c210b678c2 | 7.13 | 17 |
import time
import pytest
from client import SoraClient, SoraRole
@pytest.mark.skipif(reason="Sora C++ SDK 側の対応が必要")
def test_sendonly_authz_video_true(settings):
"""
- type: connect で audio: true / video: false で繫ぐ
- 認証成功時の払い出しで audio: false / video: true を払い出す
"""
sendonly = SoraClient(
... | shiguredo/sora-python-sdk | tests/test_authz.py | .py | 14d1b89189b52c55 | 7.13 | 17 |
import time
import pytest
from client import SoraClient, SoraRole
"""
このテストは、Sora の CA 証明書が有効かどうかを確認するためのものです。
接続先の Sora が Let's Encrypt の CA 証明書を使用している前提のテストになっています。
"""
# https://letsencrypt.org/certificates/
# ISRG Root X1
letsencrypt_org_ca_cert = b"""
-----BEGIN CERTIFICATE-----
MIIFazCCA1OgAwIBAgIRAIIQz7DSQON... | shiguredo/sora-python-sdk | tests/test_ca_cert.py | .py | a137dc21f4332e7a | 7.13 | 17 |
"""
ConvertJsonValue が int32 範囲を超える Python 整数を受け付けることを検証する。
metadata 等の JSON 変換経路で nb::cast<int> だと 2**31 超で例外になる。
"""
from __future__ import annotations
from sora_sdk import Sora
def test_create_connection_accepts_int64_metadata():
"""
metadata に int32 を超える整数を渡しても create_connection が成功すること。
前提:
-... | shiguredo/sora-python-sdk | tests/test_convert_json_value_int64.py | .py | d2eef40411dcabc9 | 7.13 | 17 |
import os
import sys
import time
import pytest
from client import SoraClient, SoraDegradationPreference, SoraRole
VIDEO_CODEC_TYPE = "VP8"
VIDEO_BIT_RATE = 300
VIDEO_WIDTH = 960
VIDEO_HEIGHT = 528
@pytest.mark.skipif(
os.getenv("CI") == "true" and sys.platform == "darwin",
reason="CI の macOS では性能がでないためスキップす... | shiguredo/sora-python-sdk | tests/test_degradation_preference.py | .py | 641f22a77c578740 | 7.13 | 17 |
"""
disconnect() が有限時間で完了することを検証する。
OnDisconnect が来ない異常時に永久ブロックしないことが本修正の主眼だが、
モック禁止のため異常経路はコード上の有限 wait で担保し、ここでは正常系で
disconnect() が妥当な時間内に戻ることを確認する。
"""
from __future__ import annotations
import time
from client import SoraClient, SoraRole
def test_disconnect_returns_within_timeout(settings):
"""
正常系の d... | shiguredo/sora-python-sdk | tests/test_disconnect_timeout.py | .py | 230f0d85bfac2171 | 7.13 | 17 |
import os
import platform
import time
import pytest
from api import get_stats_connection_api, request_key_frame_api
from client import (
SoraClient,
SoraRole,
codec_type_string_to_codec_type,
is_codec_supported,
)
from simulcast import default_video_bit_rate, expect_target_bitrate
from sora_sdk import... | shiguredo/sora-python-sdk | tests/test_intel_vpl.py | .py | 89d32afd74fb0ef0 | 7.13 | 17 |
"""
フレームの data() が返す ndarray が親フレームより長生きしても安全であることを検証する。
ndarray の owner が空だと、Python 側でフレームを解放したあとにバッファが
ダングリングポインタになり、アクセス時に SEGV しうる。
"""
from __future__ import annotations
import gc
import time
from threading import Event
from client import SoraClient, SoraRole
from sora_sdk import SoraAudioFrame, SoraAudioStre... | shiguredo/sora-python-sdk | tests/test_ndarray_parent_reference.py | .py | 2df0d8050f0ace99 | 8.13 | 17 |
import os
import time
import pytest
from api import request_key_frame_api
from client import (
SoraClient,
SoraRole,
codec_type_string_to_codec_type,
get_video_codec_capability,
)
from simulcast import default_video_bit_rate, expect_target_bitrate
from sora_sdk import (
SoraVideoCodecImplementatio... | shiguredo/sora-python-sdk | tests/test_nvidia_video_codec.py | .py | 5f7fb080cc511506 | 7.13 | 17 |
import time
from client import SoraClient, SoraRole
# opus params のテストは test_signaling.py にある
# https://tex2e.github.io/rfc-translater/html/rfc7587.html
def test_sendonly_audio_opus_params_16khz_mono(settings):
"""
SDP では 48000/2 だが、Opus の設定で 16000/1 を配信してみる
"""
with SoraClient(
settings,
... | shiguredo/sora-python-sdk | tests/test_opus.py | .py | cdeec24bbe8d6249 | 7.13 | 17 |
from base_classes import InteractionAction
import tempfile
import subprocess
class AssistantCmdHandlerAction(InteractionAction):
"""Handles execution of commands using temporary files with timeout support."""
def __init__(self, session):
self.session = session
self._default_timeout = self._ge... | acasto/iptic-memex | actions/assistant_cmd_handler_action.py | .py | 81330e88ec7c502b | 7.48 | 8 |
from base_classes import InteractionAction
import subprocess
import shlex
import os
from typing import Optional, Tuple
import time
from utils.tool_args import get_str
class AssistantCmdToolAction(InteractionAction):
"""
Enhanced command tool with support for piping allowed commands
"""
def __init__(se... | acasto/iptic-memex | actions/assistant_cmd_tool_action.py | .py | 6fc4d91c081e5fb6 | 7.48 | 8 |
from base_classes import InteractionAction
import subprocess
import shlex
import os
import shutil
from typing import Tuple, Optional, Set, List, Dict
from utils.tool_args import get_str
class AssistantDockerToolAction(InteractionAction):
"""Command tool that provides a Docker environment for command execution wit... | acasto/iptic-memex | actions/assistant_docker_tool_action.py | .py | 06903effac88300f | 7.48 | 8 |
from base_classes import InteractionAction
from utils.tool_args import get_str
class AssistantMathToolAction(InteractionAction):
"""
Action for handling math operations
"""
def __init__(self, session):
self.session = session
self.temp_file_runner = session.get_action('assistant_cmd_han... | acasto/iptic-memex | actions/assistant_math_tool_action.py | .py | c7607c8b6b4716ce | 7.48 | 8 |
from base_classes import InteractionAction
from utils.storage_utils import TableSchema
from utils.tool_args import get_str, get_int
class AssistantMemoryToolAction(InteractionAction):
"""
Supercharged action for handling memory operations via the StorageProvider.
Supports saving, reading, and clearing mem... | acasto/iptic-memex | actions/assistant_memory_tool_action.py | .py | c4ebd49a96057890 | 7.48 | 8 |
from base_classes import InteractionAction
import subprocess
import platform
import shlex
import urllib.parse
from utils.tool_args import get_str, get_list
class AssistantOpenlinkToolAction(InteractionAction):
"""
Action for opening URLs in the system's default browser.
Simple usage:
'''
%%OPENLI... | acasto/iptic-memex | actions/assistant_openlink_tool_action.py | .py | 6055248ed3d16e15 | 7.48 | 8 |
from base_classes import InteractionAction
from typing import List, Optional, Tuple, Any
Decision = Optional[Tuple[str, Optional[str]]]
class AssistantOutputAction(InteractionAction):
"""
Streams assistant output while applying an optional, config-driven filter pipeline.
- Writes post-filtered text to t... | acasto/iptic-memex | actions/assistant_output_action.py | .py | 2617aded7a6cdb4f | 7.48 | 8 |
from __future__ import annotations
from typing import Any, Dict, List, Optional
from base_classes import InteractionAction
from rag.fs_utils import load_rag_config, read_text
from core.provider_factory import ProviderFactory
from rag.search import search
class AssistantRagsearchToolAction(InteractionAction):
""... | acasto/iptic-memex | actions/assistant_ragsearch_tool_action.py | .py | 0a2f8aaf61e9a29a | 7.48 | 8 |
from __future__ import annotations
import html
import os
from typing import List, Optional
from base_classes import InteractionAction
from component_registry import PromptResolver
class BuildSystemAddendaAction(InteractionAction):
"""Compose conditional system-prompt addenda post-templating.
Sources (resol... | acasto/iptic-memex | actions/build_system_addenda_action.py | .py | a071f4d83d8a1d2e | 7.48 | 8 |
from base_classes import StepwiseAction, Completed, InteractionNeeded
class ClearContextAction(StepwiseAction):
"""Remove a specific context or clear all (Stepwise)."""
def __init__(self, session):
self.session = session
self.token_counter = self.session.get_action('count_tokens')
def st... | acasto/iptic-memex | actions/clear_context_action.py | .py | 925b910b05c309c1 | 7.48 | 8 |
from __future__ import annotations
from typing import Any, Dict
from base_classes import StepwiseAction, Completed, Updates
class ConfirmAction(StepwiseAction):
"""A tiny canary action demonstrating stepwise prompts.
- Asks the user to confirm a short message.
- On confirm, emits a status update and re... | acasto/iptic-memex | actions/confirm_action.py | .py | 7a53498c17a1c5ad | 7.48 | 8 |
from __future__ import annotations
from base_classes import InteractionAction
from memex_mcp.client import get_or_create_client, inject_demo_server
class McpDemoAction(InteractionAction):
"""Load a demo MCP server named 'testmcp' with a couple of tools.
Usage: load mcp demo
"""
def __init__(self, s... | acasto/iptic-memex | actions/mcp_demo_action.py | .py | 64854233f885cc4a | 7.48 | 8 |
from __future__ import annotations
from base_classes import InteractionAction
from memex_mcp.client import get_or_create_client
class McpLoadAction(InteractionAction):
"""Load a configured MCP server and register its tools.
Usage:
- mcp load <server>
Honors per-server allowed_tools and auto_alias.... | acasto/iptic-memex | actions/mcp_load_action.py | .py | 2bd0615ee647bf84 | 7.48 | 8 |
from __future__ import annotations
from base_classes import InteractionAction
class McpToggleAction(InteractionAction):
"""Enable or disable MCP globally for the session.
Usage: /mcp on | /mcp off
- on: set [MCP].active=true and autoload configured servers
- off: unload all app-side servers and set ... | acasto/iptic-memex | actions/mcp_toggle_action.py | .py | 13637c2b4a73a783 | 7.48 | 8 |
from __future__ import annotations
from base_classes import InteractionAction
from memex_mcp.client import get_or_create_client
class McpUnloadAction(InteractionAction):
"""Unload a configured MCP server: disconnect and remove its dynamic tools.
Usage:
- mcp unload <server>
- mcp unload all
... | acasto/iptic-memex | actions/mcp_unload_action.py | .py | 3b3c6398c20b0595 | 7.48 | 8 |
from __future__ import annotations
from base_classes import InteractionAction
from typing import Optional, Tuple
Decision = Optional[Tuple[str, Optional[str]]]
class OutputFilterAssumeThinkOpenAction(InteractionAction):
"""
Assumes we are inside a <think> (or <thinking>) span until a closing </think> or </... | acasto/iptic-memex | actions/output_filter_assume_think_open_action.py | .py | 5fbf191697044716 | 7.48 | 8 |
from __future__ import annotations
from base_classes import InteractionAction
from typing import Optional, Tuple
Decision = Optional[Tuple[str, Optional[str]]]
class OutputFilterThinkTagAction(InteractionAction):
"""
Hides content within <think>...</think> (and <thinking>...</thinking>) spans during stream... | acasto/iptic-memex | actions/output_filter_think_tag_action.py | .py | 270daf854b44a186 | 7.48 | 8 |
from base_classes import InteractionAction
from typing import Any
class PersistStatsAction(InteractionAction):
"""
Action for persisting usage statistics to database
"""
def __init__(self, session):
self.session = session
self.provider = session.get_provider()
# Define stats s... | acasto/iptic-memex | actions/persist_stats_action.py | .py | bcc06132a35f9d46 | 7.48 | 8 |
import re
from datetime import datetime
from base_classes import InteractionAction
class PromptTemplateAction(InteractionAction):
"""Default template handler for prompt content"""
def __init__(self, session):
self.session = session
self.template_pattern = r"\{\{([^}]+)\}\}"
def _get_turn... | acasto/iptic-memex | actions/prompt_template_action.py | .py | 587f7c1a73164de7 | 7.48 | 8 |
from __future__ import annotations
import re
from typing import Any, List, Optional, Tuple
from base_classes import InteractionAction
class PromptTemplateChatAction(InteractionAction):
"""Template handler for chat history snippets.
Supports placeholders like:
- {{chat:last}} -> last message
- {{... | acasto/iptic-memex | actions/prompt_template_chat_action.py | .py | 363d1caf73181777 | 7.48 | 8 |
# Copyright 2023 Canonical Ltd.
# See LICENSE file for licensing details.
"""Apt helper module for missing features in operator_libs_linux."""
import re
from subprocess import PIPE, CalledProcessError, check_output
from typing import Optional
from charms.operator_libs_linux.v0 import apt
def get_candidate_version(... | canonical/hardware-observer-operator | src/apt_helpers.py | .py | fd7528780b005ce8 | 7.65 | 19 |
# Copyright 2023 Canonical Ltd.
# See LICENSE file for licensing details.
"""Config."""
import typing as t
from enum import Enum
from pathlib import Path
from pydantic import BaseModel # pylint: disable = no-name-in-module
DEFAULT_BIND_ADDRESS = "127.0.0.1"
DCGM_EXPORTER_PORT = 9400
class ExporterSettings(BaseMo... | canonical/hardware-observer-operator | src/config.py | .py | ee72b8320e6c2070 | 7.65 | 19 |
# Copyright 2023 Canonical Ltd.
# See LICENSE file for licensing details.
"""Hardware support config and command helper."""
import json
import logging
import re
import subprocess
import typing as t
from pathlib import Path
from typing import Optional
from charms.operator_libs_linux.v0 import apt
from config import ... | canonical/hardware-observer-operator | src/hardware.py | .py | 87d7a6da23e5f2c6 | 7.65 | 19 |
# Copyright 2025 Canonical Ltd.
# See LICENSE file for licensing details.
"""Literals for the charm."""
import logging
import pydantic
from hardware import (
dcgm_v3_compatible,
dcgm_v4_compatible,
get_cuda_version_from_driver,
get_nvidia_driver_version,
)
logger = logging.getLogger(__name__)
clas... | canonical/hardware-observer-operator | src/literals.py | .py | eda8f239d06341e1 | 7.65 | 19 |
# Copyright 2023 Canonical Ltd.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, s... | canonical/hardware-observer-operator | src/os_platform.py | .py | 07525f3f2abe832b | 7.65 | 19 |
# Copyright 2025 Canonical Ltd.
# See LICENSE file for licensing details.
"""SSDLC (Secure Software Development Lifecycle) Logging.
These events provide critical visibility into the asset's lifecycle and health, and can help
detect potential tampering or malicious activities aimed at altering system behavior.
Loggin... | canonical/hardware-observer-operator | src/ssdlc.py | .py | 728eb2c0cba440dc | 7.65 | 19 |
# Copyright 2024 Canonical Ltd.
# See LICENSE file for licensing details.
"""Helper functions to run functional tests for hardware-observer."""
import json
import re
from collections import defaultdict
from dataclasses import dataclass
from pathlib import Path
from typing import Dict, List, Optional
import yaml
from... | canonical/hardware-observer-operator | tests/functional/utils.py | .py | 226359d2235afd29 | 8.15 | 19 |
# Copyright 2024 Canonical Ltd.
# See LICENSE file for licensing details.
import os
import pytest
import pytest_asyncio
from juju.controller import Controller
from utils import get_or_add_model
LXD_CTL_NAME = os.environ.get("LXD_CONTROLLER")
K8S_CTL_NAME = os.environ.get("K8S_CONTROLLER")
MODEL_CONFIG = {"logging-c... | canonical/hardware-observer-operator | tests/integration/conftest.py | .py | e3970ae01d3323e9 | 7.15 | 19 |
#!/usr/bin/env python3
# Copyright 2024 Canonical Ltd.
# See LICENSE file for licensing details.
# This file is supposed to run on the hardware observer unit.
import time
from mock_data import SAMPLE_METRICS
from prometheus_client import REGISTRY, start_http_server
from prometheus_client.core import GaugeMetricFamil... | canonical/hardware-observer-operator | tests/integration/export_mock_metrics.py | .py | df17dc23f8aaeb61 | 8.15 | 19 |
# Copyright 2024 Canonical Ltd.
# See LICENSE file for licensing details.
import logging
from dataclasses import dataclass
from juju.controller import Controller
from juju.model import Model
from pytest_operator.plugin import OpsTest
logger = logging.getLogger(__name__)
async def get_or_add_model(ops_test: OpsTest... | canonical/hardware-observer-operator | tests/integration/utils.py | .py | 51cd4d2ac57d6d0e | 8.15 | 19 |
# Copyright 2023 Canonical Ltd.
# See LICENSE file for licensing details.
import unittest
from subprocess import CalledProcessError
from unittest import mock
from charms.operator_libs_linux.v0 import apt
import apt_helpers
APT_CACHE_POLICY_FREEIPMI_TOOLS_OUTPUT = """freeipmi-tools:
Installed: (none)
Candidate: ... | canonical/hardware-observer-operator | tests/unit/test_apt_helpers.py | .py | 6f17915693d20380 | 7.15 | 19 |
# Copyright 2025 Canonical Ltd.
# See LICENSE file for licensing details.
from unittest.mock import patch
import pytest
from pydantic import ValidationError
from literals import HWObserverConfig
@pytest.fixture(autouse=True)
def mock_driver_to_cuda():
with patch("literals.get_cuda_version_from_driver") as mock... | canonical/hardware-observer-operator | tests/unit/test_literals.py | .py | 61e63e5ad0adc7c6 | 7.15 | 19 |
# Copyright 2023 Canonical Ltd.
# See LICENSE file for licensing details.
from unittest.mock import patch
import pytest
from os_platform import OSPlatform, UbuntuSeries, get_os_platform
@pytest.mark.parametrize(
"release,series",
[("22.04", UbuntuSeries.JAMMY), ("20.04", UbuntuSeries.FOCAL), ("NR", None)],... | canonical/hardware-observer-operator | tests/unit/test_os_platform.py | .py | d44328ce2686326d | 7.15 | 19 |
# Copyright 2025 Canonical Ltd.
# See LICENSE file for licensing details.
"""Unit tests for SSDLC logging functionality."""
import unittest
from datetime import datetime, timezone
from unittest import mock
from parameterized import parameterized
from ssdlc import EXPORTER_NAME_TO_SERVICE, Service, SSDLCSysEvent, lo... | canonical/hardware-observer-operator | tests/unit/test_ssdlc.py | .py | af407142eb558053 | 7.15 | 19 |
from talon import Module, actions
mod=Module()
@mod.action_class
class GenericMappingsActions:
def create_spoken_form_mappings(name_obj_list: list[tuple[str, object]]) -> tuple[dict, dict]:
"""Returns spoken-form dict and spoken_form→obj_list mapping.
Input: list of (name, obj) pairs. Du... | geobarry/mousefree | accessibility dev/spoken form mapping.py | .py | 352ad31b92fd5576 | 7.42 | 6 |
from talon import Module, Context, actions, ui
mod=Module()
def get_notification_window():
"""Returns a list of window elements"""
root=ui.root_element()
if root:
win_list=ui.windows()
win_list=[w for w in win_list if w.title == "New notification"]
w=win_list[0]
el=w.... | geobarry/mousefree | apps/notification popups/win notification popups.py | .py | 1592f556325b5b1b | 7.42 | 6 |
from talon import Module, Context, actions, ui
from talon.windows import ax as ax
import re
mod = Module()
@mod.action_class
class Actions:
def app_switch_by_title(title_regex: str):
"""Switches to an app with the given regular expression in the title"""
print(f'title_regex: {title_regex}')
... | geobarry/mousefree | apps/windows general.py | .py | abc2e05f745c68f1 | 7.42 | 6 |
from talon import Module, ui, Context, ctrl, cron, actions, screen
from talon.types import Point2d as Point2d, Rect
import math
mod = Module()
ctx = Context()
interval = 8
time_mult = 1
class mouse_mover:
"""Moves mouse using cron intervals until destination is reached"""
def __init__(self, dest: Point2d, ms ... | geobarry/mousefree | mouse/compass mouse/mouse mover.py | .py | 9b8146be550974e2 | 7.42 | 6 |
from talon import Module, ui, Context, actions, screen
from talon.types import Rect
mod = Module()
ctx = Context()
@mod.action_class
class Actions:
def containing_screen(x: int, y: int):
"""Returns boolean describing if in per coordinates are in any screen"""
for s in screen.screens():
... | geobarry/mousefree | mouse/compass mouse/screen utils.py | .py | 5a8c55afa30c5e11 | 7.42 | 6 |
from talon import Module, ui, Context, ctrl, cron, actions, screen
from talon.types import Point2d as Point2d, Rect
from talon.windows import ax as ax
import math
mod = Module()
mod.list("handle_position","position for grabbing ui elements")
mod.list("move_coordinates","x & y differentials for moving mouse")
m... | geobarry/mousefree | mouse/windows mouse utilities/windows mouse actions.py | .py | e518b67d1cf5bff9 | 7.42 | 6 |
from typing import Tuple
from talon import Context, Module, ctrl, cron, actions, imgui, ui, settings
# parameters
reaction_time = 1500 # set to 0 if you don't want backwards-correction
check_repeat_time = 20 # milliseconds to check to see if it's time to repeat
minimum_repeat_interval = 30 # milliseconds
speed_change ... | geobarry/mousefree | slow repeater/slow_repeater.py | .py | 411e36dbcb061101 | 7.42 | 6 |
from talon import Module, Context, clip, ctrl, cron, actions, canvas, screen, settings
from talon.windows import ax as ax, ui as winui
from talon.types import Point2d, Rect
from talon.skia import Paint
from typing import Callable
saved_rect = []
last_mouse = None
mod = Module()
snip_delay = 3
def expand_rect(rect:... | geobarry/mousefree | snip helper/snip helper.py | .py | 92cec51ccc6de5bb | 7.42 | 6 |
from talon import Context, Module, canvas, cron, ctrl, cron, screen, ui, actions
from talon.types import Point2d as Point2d, Rect
from talon.skia import Canvas as SkCanvas
mod = Module()
@mod.action_class
class Actions:
def text_aliased(label: str, x: int, y: int, font_size: float, canvas: SkCanvas):
... | geobarry/mousefree | utilities/canvas utilities.py | .py | 09f050ad3558d5be | 7.42 | 6 |
from talon import Context,Module,actions,clip,ui
from talon.windows import ax as ax, ui as winui
from typing import Callable
import re
import os
mod = Module()
#ctx = Context()
def number_to_words(number_str):
"""Converts a string of numbers to its written form."""
units = ["", "one", "two", "three", "four",... | geobarry/mousefree | utilities/target construction utilities.py | .py | cf7c9b069ed55aef | 7.42 | 6 |
from talon import Module, Context, actions
import time
class time_stopper:
def __init__(self,sec_lim,counter_limits = [-1]):
self.sec_lim = sec_lim
self.start_time = time.perf_counter()
self.count_limit = counter_limits
self.n = [0]*len(self.count_limit)
self.manual_break = ... | geobarry/mousefree | utilities/time stopper/time stopper.py | .py | 4bcbe24880745227 | 7.42 | 6 |
import os
import anndata
import h5py
import hdf5plugin # noqa: F401
import numpy as np
import pandas as pd
import scipy.sparse as sps
from pacmap import PaCMAP
from parafac2.parafac2 import parafac2_nd, store_pf2
from scipy.stats import gmean
from sklearn.decomposition import PCA
from sklearn.linear_model import Line... | meyer-lab/RISE | RISE/factorization.py | .py | 6c45b10847b740c0 | 7.42 | 6 |
"""
Optimized Product Quantization (OPQ) for projecting and compressing factor matrices.
"""
import numpy as np
from sklearn.cluster import KMeans, MiniBatchKMeans
from sklearn.metrics import r2_score
class OPQQuantizer:
"""Optimized Product Quantizer for compressing projection matrices.
Parameters
----... | meyer-lab/RISE | RISE/opq.py | .py | 4abaa405ce5603be | 7.42 | 6 |
"""
Plotting functions for BiCV-based rank selection.
"""
import numpy as np
import pandas as pd
import seaborn as sns
from matplotlib.axes import Axes
from ..rank_selection import BiCVOptimizationResult
def plot_bicv_r2x(results: pd.DataFrame, ax: Axes) -> None:
"""Plot BiCV R2X and in-sample fit R2X across ra... | meyer-lab/RISE | RISE/plotting/rank_selection.py | .py | 90b72e540b9d56c2 | 7.42 | 6 |
"""
Decomposition stability analysis and plotting functions.
"""
import anndata
import numpy as np
import pandas as pd
import scanpy as sc
import seaborn as sns
from matplotlib.axes import Axes
from tensorly.cp_tensor import CPTensor
from tlviz.factor_tools import factor_match_score as fms
from ..factorization import... | meyer-lab/RISE | RISE/plotting/stability.py | .py | 5d9ddf96df935ebb | 7.42 | 6 |
"""
Unit tests for cell-type alignment scoring and visualization.
"""
import anndata
import matplotlib.pyplot as plt
import numpy as np
import pandas as pd
import pytest
from RISE import (
CellTypeAlignmentResults,
ComponentAlignmentResult,
cell_type_alignment,
compute_tau,
score_cell_type_alignme... | meyer-lab/RISE | RISE/tests/test_annotation_alignment.py | .py | 3e42e330d6ced246 | 7.92 | 6 |
"""
Test OPQ compression, export_factors, and load_factors.
"""
import tempfile
import anndata
import numpy as np
import pytest
from RISE import OPQQuantizer, export_factors, find_optimal_opq, load_factors
def test_opq_quantizer_synthetic():
"""Test OPQQuantizer encode/decode and reconstruction fidelity."""
... | meyer-lab/RISE | RISE/tests/test_factors.py | .py | 1006d52755d6492e | 7.92 | 6 |
"""
Test the parafac2 method.
"""
import numpy as np
import pandas as pd
from analysis.imports import import_thomson
from ..factorization import pf2, rise_pca_r2x
def test_factor_thomson_reprod():
"""Import and factor Thomson.
Check that the factorization process is reproducible."""
X = import_thomson(... | meyer-lab/RISE | RISE/tests/test_parafac2.py | .py | 64660e93db3ca7bc | 7.92 | 6 |
"""
Test bi-cross-validation rank selection.
"""
import anndata
import numpy as np
import pandas as pd
import pytest
from .. import rank_selection
from ..rank_selection import BiCVOptimizationResult, bicv, optimize_rank
def _make_test_data(
n_cond: int = 5, n_genes: int = 40, true_rank: int = 3, seed: int = 0
)... | meyer-lab/RISE | RISE/tests/test_rank_selection.py | .py | 1703bfd7371d6332 | 7.92 | 6 |
"""
This file contains functions that are used in multiple figures.
"""
import os
import sys
import time
import warnings
from string import ascii_letters
warnings.filterwarnings("ignore", category=FutureWarning)
warnings.filterwarnings("ignore", category=UserWarning)
warnings.filterwarnings("ignore", category=Depreca... | meyer-lab/RISE | analysis/figures/common.py | .py | 05bb6bc1b1a89138 | 7.42 | 6 |
"""
Figure 2f_h
"""
import anndata
import numpy as np
import pandas as pd
from RISE.plotting import (
plot_condition_factors,
plot_eigenstate_factors,
plot_gene_factors,
)
from ..imports import import_thomson_factors
from .common import getSetup, subplotLabel
def makeFigure():
"""Get a list of the ... | meyer-lab/RISE | analysis/figures/figure2f_h.py | .py | 482dd1e4a2b9c266 | 7.42 | 6 |
"""
Figure 4d
"""
import itertools
import anndata
import numpy as np
import pandas as pd
import seaborn as sns
from matplotlib.axes import Axes
from sklearn import preprocessing
from sklearn.linear_model import LogisticRegression
from analysis.figures.commonFuncs.plotLupus import samples_only_lupus
from RISE.factori... | meyer-lab/RISE | analysis/figures/figure4d.py | .py | d4cbbc7a3da0c7b0 | 7.42 | 6 |
"""
Figure 5a_e
"""
import anndata
import numpy as np
import pandas as pd
import scanpy as sc
import seaborn as sns
from matplotlib.axes import Axes
from RISE.plotting import (
cell_count_perc_lupus_df,
plot_gene_factors,
plot_gene_pacmap,
plot_wp_pacmap,
rotate_xaxis,
)
from .common import getSe... | meyer-lab/RISE | analysis/figures/figure5a_e.py | .py | 8249e938eeeebdb8 | 7.42 | 6 |
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