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def convertMac(macAddress): """ Performs conversion of Mac Address format to the colon type and return as string """ # Reference: https://forums.freebsd.org/threads/python-inserting-a-sign-after-every-n-th-character.26881/ # Convert to CAPS stdMac = str(macAddress).upper() # Checks if contains '-' ch...
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def select(*args): """Select specific columns from DataFrame. Output will be DplyFrame type. Order of columns will be the same as input into select. >>> diamonds >> select(X.color, X.carat) >> head(3) Out: color carat 0 E 0.23 1 E 0.21 2 E 0.23 Grouping variables are implied...
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def format_tasks(tasks): """Converts a list of tasks to a list of string representations. Args: tasks: A list of the tasks to convert. Returns: A list of string formatted tasks. """ return ['%d : %s (%s)' % (task.key.id(), task.description, ('do...
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def get_angular_speed(linear_vel, turn_rad): """Relates path to the angular velocity.""" if turn_rad != 0: return linear_vel / turn_rad else: return 0
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def count_achievable_targets(numbers, start, end): """ Counts the number of targets within the range [start, end] that can be achieved by adding x and y, where x and y are two distinct numbers in `numbers`. """ count = 0 for target in range(start, end + 1): for number in numbers: ...
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from typing import Dict def _join_words(w1: Dict, w2: Dict) -> Dict: """Join two word dicts. Join the text of two words and correct x dimensions Args: w1: Left word w2: Right word Returns: Dict: Joined word """ temp = w1 temp["text"] = w1["text"] + " " + w2["text...
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def magnitude(u): """returns the magnitude (length) of vector u""" return (u[0]**2 + u[1]**2 + u[2]**2)**0.5
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def get_form_by_action(response, action): """Gets a form give an action string or returns None.""" form = None try: form = next( form for form in response.forms.values() if form.action == action) except StopIteration: pass return form
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def hermite(m0,m1,t0,t1,u,domain=None): """Evaluate a cubic hermite curve at interpolation parameter u in [0,1]. Endpoints are m0 and m1, with derivatives t0 and t1. These are assumed to be Numpy arrays. Alternatively, if `domain` != None, then this will use domain=(a,b) as the interpolation ...
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import math def point_on_sphere(r, s_deg, t_deg, center): """ Returns a point on sphere of radius r: see definition of polar (sperical) coordinate system in 3D. """ sin = math.sin cos = math.cos s = s_deg*math.pi/180 t = t_deg*math.pi/180 x = center[0] + r * cos(s) * sin(t) y = center[1] + r * sin...
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def merge(*args, **kwargs): """ Merges several dictionaries. Checks for consistent values. :param args: dictionaries :return: merged dict """ ret = dict(args[0]) for d in args[1:] + (kwargs,): for k in d: if k in ret: if d[k] != ret[k]: ...
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def plural(how_many): """Construct postfix for singular or plural.""" if how_many > 1 or how_many == 0: return "s" return ""
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def remove_nones(dict_): """ Remove fields from the dict whose values are None. Returns a new dict. :type dict_: dict :rtype dict >>> remove_nones({'a': 4, 'b': None, 'c': None}) {'a': 4} >>> sorted(remove_nones({'a': 'a', 'b': 0}).items()) [('a', 'a'), ('b', 0)] >>> remove_non...
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import csv def csv_reader(fp, dialect='escaped'): """Returns a csv reader from stream-like `fp` with the correct dialet.""" if not dialect: dialect = csv.Sniffer().sniff(fp.read(1024)) fp.seek(0) return csv.reader(fp, dialect)
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def create_numeric_suffix(base, count, zeros): """Create a string based on count and number of zeros decided by zeros :param base: the basename for new map :param count: a number :param zeros: a string containing the expected number, coming from suffix option like "%05" """ spli = zero...
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import yaml def load_skeleton(fpath): """Load keypoint and parent specification defining skeletal stucture. Parameters ---------- fpath: file-like object, string, or pathlib.Path .yml file to read from Returns ------- keypoint_names: str list, len K parents: i...
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def is_vertex_field_name(field_name): """Return True if the field's name indicates it is a non-root vertex field.""" return field_name.startswith('out_') or field_name.startswith('in_')
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import re def create_metadata_filename_regex(metadata, study_id): """Create regular expressions for study metadata files. Parameters ---------- metadata : str, required Type of metadata file ('sample' or 'prep'), found in the study_path, from which to extract attributes. study_id ...
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def project_coordinates(coordinates, projection, **kwargs): """ Apply projection to given coordinates Allows to apply projections to any number of coordinates, assuming that the first ones are ``longitude`` and ``latitude``. Examples -------- >>> # Define a custom projection function ...
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from typing import Union import json def decode_json(json_input: Union[str, None] = None): """ Simple wrapper of json.load and json.loads. If json_input is None the output is an empty dictionary. If the input is a string that ends in .json it is decoded using json.load. Otherwise it is decoded us...
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def left_shift(data, dim="t2", shift_points=0): """Remove points from the left of data Args: data (dnpdata): Data container for data +---------------+------+---------+--------------------------------------------------+ | parameter | type | default | description ...
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def capfirst(x): """Capitalize the first letter of a string. Kindly borrowed from Django""" return x and str(x)[0].upper() + str(x)[1:]
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def extract_module( asdl_str ): """Return the module name and the module string of the given asdl string.""" module_name_start = asdl_str.index( 'module' ) + len( 'module' ) module_name_end = asdl_str.index( '{' ) module_str_end = asdl_str.index( '}' ) module_name = asdl_str[ module_name_start : module_nam...
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def uniq(lst): """ this is like list(set(lst)) except that it gets around unhashability by stringifying everything. If str(a) == str(b) then this will get rid of one of them. """ seen = {} result = [] for item in lst: if str(item) not in seen: result.append(item) ...
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def roundodd(num): """ Round the given number to the nearest odd number. """ rounded = round(num) if rounded % 2 != 0: return rounded else: if rounded > num: return rounded - 1 else: return rounded + 1
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def convert_char_to_int(char, limit=256): """ Take a character and return an integer value while ensuring the values returned do not go above the limit. :param str char: A single character. :param int limit: An integer representing the largest value which will start requiring reducing char value. (d...
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def one_minus(x): """Returns elementwise '1 - x' of any argument.""" return 1 - x
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def verify_names(*, chk_names, ref_names): """ Verifies that all names in chk_names also are in ref_names and in the same order. Names that appear multiple times in chk_names should appear the same number of times in ref_names. """ i_chk = iter(chk_names) i_ref = iter(ref_names) chk = next(...
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def symmetric_tour_list(n_cities, start_index = 0): """ Returns a numpy array representiung a symmetric tour of cities length = n_cities + 1 First and last cities are index 'start_index' e.g. for start_index = 0 then for 5 cities tour = [0, 1, 2, 3, 4, 0] """ tour = [x for x in range(n_...
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def _is_galactic(source_class): """Re-group sources into rough categories. Categories: - 'galactic' - 'extra-galactic' - 'unknown' - 'other' Source identifications and associations are treated identically, i.e. lower-case and upper-case source classes are not distinguished. Refere...
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def add_trip_velocity(df): """Adding new variable for trip velocity (in miles per hour).""" print("adding trip velocity") df['trip_velocity'] = df.trip_distance / df.trip_duration_hours return df
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import re def extract_top_level_domain_from_uri(uri): """ Extract host's top level domain from URIs like 'https://amy.carpentries.org/api/v1/organizations/earlham.ac.uk/' to 'earlham.ac.uk'. When subdomains are used, as in 'https://amy.carpentries.org/api/v1/organizations/cmist.manchester.ac.uk/' we are o...
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import re def get_error_message(error, language): """Filters the stack trace from stderr and returns only the error message.""" if error == '': return None elif language == "python": if any(e in error for e in ["KeyboardInterrupt", "SystemExit", "GeneratorExit"]): # Non-compiler errors ...
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def constant_benchmark_theta(benchmark_name): """ Utility function to be used as input to various SampleAugmenter functions, specifying a single parameter benchmark. Parameters ---------- benchmark_name : str Name of the benchmark (as in `madminer.core.MadMiner.add_benchmark`) ...
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from typing import List from typing import Tuple import random def _sample_public_client_ids( num_clients: int, client_data: List, round_num: int, epoch: int, ) -> Tuple[List, int]: # pylint: disable=g-bare-generic """Returns a random subset of client ids.""" del round_num # Unused. return ran...
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def loss_batch(model, loss_func, xb, yb, opt=None, metric=None): """Calculates the loss and metric value for a batch of data, and optionally performs gradient descent if an optimizer is provided.""" preds = model(xb) loss = loss_func(preds, yb) if opt is not None: loss.backward() # Compute...
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def aizawa(XYZ, t, a=0.95, b=0.7, c=0.6, d=3.5, e=0.25, dz=0.1): """ The Aizawa Attractor. x0 = (0.1,0,0) """ x, y, z = XYZ x_dt = (z - b) * x - d * y y_dt = d * x + (z - b) * y z_dt = c + a * z - (z**3) / 3 - (x**2 + y**2) * (1 + e * z) + dz * z * x**3 return x_dt, y_dt, z_dt
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def sample_taxon_list(genome_table, abund_table): """ Create [sample,taxon] list of lists Parameters ---------- genome_table : pd.DataFrame abund_table : pd.DataFrame """ # joining tables df = abund_table.merge(genome_table, on=['Taxon']) # convert to a list of lists sample_t...
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def cal_nodes(cut_off_value, labels): """Creates nodes for the hierarchical value map (vis.js network) based on Args Args: cut_off_value ([int]): [cutoff-value] labels ([dict]): [labels] Returns: [Array]: [nodes] """ nodes = [] for l in labels: if (l.get('acv')=...
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def get_samples(outlier_removed_file): """ Read samples from the outlier removed file outlier_removed_file : str ; the outlier removed file returns : list ; the sample names of the outliers """ outlier_samples = [] with open(outlier_removed_file,'r') as IN: for line in IN: ...
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import ast def safe_eval_maths(expr): """ Safely evaluates a maths expression, such as (2**32-1) or (400|0x1000) Will throw a ValueError exception on error Note: This is still susceptible to memory or CPU exhaustion by putting in large numbers. """ allowed = (ast.Expression, ast...
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def get_flat_function(List, idx): """Get the idx index of List. If idx >= len(List), return the last element""" if idx < 0: return List[0] elif idx < len(List): return List[idx] else: return List[-1]
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def prok(effect_col): """ Remove splice and intron signal events, not meaningful for prokaryotes""" return ','.join([ii for ii in effect_col.split(',') if 'splice' not in ii and 'intron' not in ii])
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def score(matches): """Assign winning amplicon set id based on match stats""" # naive: take max of all bins m = 0 winner = None for k, v in matches.items(): if v >= m: m = v winner = k return winner
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def get_y(path, height): """Gets the y value from the image filename""" return (float(int(path.split("_")[2])) - height/2) / (height/2)
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def get_index_from_tensor_name(tensor_name): """ Get the index of the tensor of a certain op. Args: tensor_name (str): The tensor name Returns: int: The index of the tensor """ return int(tensor_name.split(':')[1])
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def read_input(path: str): """ Read game board file from path. Return list of str. """ res = [] fil = open(path, "r") for i in fil: res.append(i[:-1]) return res
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def lemmatizer_fun(lemmatizer, token, token_tag=None): """lemmatize token with tag of token in sentence if token has not tag lemmatized With no tag method Arguments: lemmatizer {obj} -- instance of WordNetLemmatizer token {str} -- token Keyword Arguments: token_tag {str} -- tag...
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import json def get_ner_tag_mapping(path): """ get ner_tag_mapping callable ---------------------------- :param path: [str] to ner_tag_mapping json :return: [callable] ner_tag_mapping that applies ner_tag_mapping (loaded from json) or identical mapping """ def without_bio(tag): ""...
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def get_broker_items(broker_row_data, bip_codes): """Returns lists with data for broker items: execution groups, applications, message flows.""" output_list = broker_row_data.split('\n') exec_groups = list() applications = list() message_flows = list() for record in output_list: if recor...
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import torch def encodeOneHot(tensor, n_dim): """ One hot encoding for a given tensor :param tensor: (torch Tensor) :param n_dim: (int) Number of dimensions :return: (torch.Tensor) """ encoded_tensor = torch.Tensor(tensor.shape[0], n_dim).zero_().to(tensor.device) return encoded_tensor...
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import glob def list_data_files(data_path ="./data/*.csv"): """List available file to do the data analysis and group in a dict according the data frequency. Files should have the following structure: WIN$N_10M_2013.11.08_2021.01.22_.csv {ativo}_{frequencia}_{data_inicio}_{data_fim}_.csv ...
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import hashlib def _normalize_and_hash(s): """Normalizes and hashes a string with SHA-256. Args: s: The string to perform this operation on. Returns: A normalized (lowercase, remove whitespace) and SHA-256 hashed string. """ return hashlib.sha256(s.strip().lower().encode()).hexdi...
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def port_drop_ppm(port): """ Return packet drops from the port stats. """ rx_sum = sum([j - i for i, j in zip(port.rx_cyc[:-1], port.rx_cyc[1:])]) rxd_sum = sum( [j - i for i, j in zip(port.rx_drop_cyc[:-1], port.rx_drop_cyc[1:])]) tx_sum = sum([j - i for i, j in zip(port.tx_cyc[:-1], p...
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def get_dict_value(data, key): """ Returns dict value for a given key (case insensitive) """ for key_name in data.keys(): if key_name.lower() == key.lower(): return data[key_name] return None
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import json def load_settings(file): """ Load the settings file and parse it with JSON :param file: Location of the settings file :return: Dict result of parsing """ with open(file, "r+") as file: data = json.load(file) return data
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def normalize_keyword(keyword): """Normalize keyword for became id - Replace white space with '-' - Convert to lowercase""" return keyword.lower().replace(' ', '-')
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def noop_preprocessing_fn(inputs): """No-op preprocessing fn for Transform. This is provided as a convenience for pipelines that don't do any data preprocessing but require a Transform component anyway (e.g. because the trainer expects a transform graph as input). Args: inputs: Dict of input tensors. ...
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from typing import Union def resistance(voltage: Union[int, float], current: Union[int, float]) -> float: """Calculate resistance, in Ohms (\u03A9), based on Ohm's Law. Args: voltage (Union[int, float]): The voltage, in volts (V). current (Union[int, float]): The current, in Amperes (A). ...
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import re def _progress_stdout_handler(progress_cb): """ :return: stdout handler which looks for percentage done reports and makes an appropriate call to the progress callback. The handler uses a regex to look for a 'percentage' output and calls the progress handler with the number f...
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from typing import Tuple from typing import List def longest_repetition(chars: str) -> Tuple: """ For a given string s find the character c (or C) with longest consecutive repetition and return: (c, l) where l (or L) is the length of the repetition. If there are two or more characters with th...
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from importlib import import_module def dynamic_import(attribute, module_path): """Import attribute from module found at module_path at runtime. Args: attribute: the attribute of the module to import (class, function, ...) module_path: the path to the module. Returns: attribute f...
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def gettext(text): """Dummy `gettext` replacement to make string extraction tools scrape strings marked for translation """ return text
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def get_sample_name(filename: str) -> str: """Get sample name from filename.""" split = filename.split("_") return "_".join(split[:2] + split[3:])
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def encode_variable(d, i, j): """This function creates the variable (the integer) representing the fact that digit d appears in position i, j. Of course, to obtain the complement variable, you can just negate (take the negative) of the returned integer. Note that it must be: 1 <= d <= 9, 0 <= i <= 8...
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def get_next_page_count(value): """ Expects ``value`` to be an instance of ``Paginator.Page``. Returns the number of items on the next page, if any; does not check for the existence of the next page. """ p = value.paginator.page(value.next_page_number()) return p.end_index() - p.start_inde...
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def piecewise_func(parameters, x): """ Defines the piecewise function f = { b if x < a { c*(x - a) + b if x >= a where a, b and c are parameters given by parameters[0], [1] and [2] respectively """ if x < parameters[0]: return parameters[1] return paramete...
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from typing import Any from typing import List def is_typing_list(data_type: Any) -> bool: """ Return `True` if data_type is `typing.List` or a subscription of it. Examples -------- ```python3 assert is_typing_list(typing.List) assert is_typing_list(typing.List[int]) assert not is_typ...
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def csv_row_to_enquiry_filter_kwargs(csv_row: dict) -> dict: """ Converts a CSV ``row`` into a ``dict`` representing :class:`app.enquiries.models.Enquiry` query `kwargs` e.g. ``enquiry__enquirer__first_name``. :param csv_row: The CSV row :type csv_row: dict :returns: ``dict`` of queryset f...
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def enrich_with_delta(record: dict, previous_record: dict) -> dict: """Enriches a record with delta time fields. Parameters ---------- record : dict The statistics record from PocketCasts as a dict. previous_record : dict The most current record in Airtable. Returns -------...
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def has_duplicate(x): """ Checks if any value in x occurs more than once :param x: the time series to calculate the feature of :type x: pandas.Series :return: the value of this feature :return type: bool """ return len(x) != len(set(x))
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def step_input(CurrTime, Amp, StartTime = 0.0): """ Function to create a step input Arguments: CurrTime : The current timestep (will also take an array) Amp : The size of the step input StartTime : The time that the step should occur Returns: The step input for the CurrTime tim...
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def load_keywords_from_json(input_json): """Converts keywords from json to python :param input_json: json input with "keywords" array :return: keywords converted to python """ return input_json["keywords"]
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def get_asset_registry(data): """ Return the asset registry if its available""" if "AssetRegistry" in data and "AssetImportData" in data["AssetRegistry"]: return data["AssetRegistry"]
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def computeInterestingness(IC, DL, **kwargs): """function to compute interestingness of a pattern Args: IC (float): Information Content DL (float): Description Length kwargs: mode (int): 1 if I = IC/DL, 2 if I = IC - DL, default is 1 Returns: float: Interestingness sco...
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def code_from_10_length_numbers(numbers: list[int], start_index: int, n_loop: int) -> str: """ From a 10-length list of number, a starting index and a limit of loop, return a code. The start index is used to get a value. This value is add to the code, then used as an...
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def _pgsql_numerical_version_to_string(version_num): """Convert numerical PostgreSQL version to string.""" if version_num < 100000: major = version_num // 10000 minor = version_num % 10000 // 100 patch = version_num % 100 return f"{major}.{minor}.{patch}" # version 10+ m...
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def entity_with_comment(entity_a): """ A simple entity that contains pre-defined key and comment. """ entity_a.key = "key_entity_a" entity_a.comment = "example comment" return entity_a
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import re def getLength(st): """ Searching "content-length" from rtsp strings using regular expressions """ pat=re.compile("Content-Length: \d*") pat2=re.compile('\d+') mstring=pat.findall(st)[0] # matched string.. "Content-Length: 614" num=int(pat2.findall(mstring)[0]) return num
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from pathlib import Path import tempfile def mktempdir(prefix: str) -> Path: """Create a directory in ``$TMPDIR`` with the given prefix""" return Path(tempfile.mkdtemp(prefix=prefix))
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from typing import List from typing import Dict from typing import Any from typing import Optional def get_entity(entity_id: str, entities: List[Dict[str, Any]]) -> Dict: """ Retrieves entity from list of entities given the entity id. Parameters ---------- entity_id: String identifier of the rele...
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def get_snr(snr_min, emission_line, default=3): """Convenience function to get the minimum SNR for a certain emission line. If ``snr_min`` is a dictionary and ``emision_line`` is one of the keys, returns that value. If the emission line is not included in the dictionary, returns ``default``. If ``snr_m...
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import logging def remove_overly_null_columns(df, percentage_null=.25): """ Purpose: Remove columns with the count of null values exceeds the passed in percentage. This defaults to 25%. Args: df (Pandas DataFrame): DataFrame to remove columns ...
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def remove_subcomplexes(cxs, max_size=3): """ Given a list of complexes, return a list without any complexes sized max_size or lower that are a subset of another complex. """ cxs_copy = list(cxs) return [c for c in cxs if len(c) > max_size or len([c2 for c2 in cxs_copy if c.issubset(c2) ...
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def has_few_assignments(example, minimum=4): """Check if file uses symbol '=' less than `minimum` times.""" lines = example["content"].splitlines() counter = 0 for line in lines: counter += line.lower().count("=") if counter > minimum: return {"has_few_assignments": False} ...
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def two_pad(in_time): """ Takes in a number of 1 or 2 digits, returns a string of two digits. """ assert isinstance(in_time,int) assert (in_time < 100 and in_time >= 0) return "0" + str(in_time) if str(in_time).__len__() == 1 else str(in_time)
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def bernoulli_param(N, T, I_T, F_N): """ Bernoulli parameter definition (Maximum Likelihood) Args: N : Total number of people in the city T : Number of people in the test sample I_T : Number of infected people in the test sample F_N : Total number of fatalities in the ci...
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import torch def split_heads(x, num_heads): """split x into multi heads Args: x: [batch_size, length, depth] Returns: y: [[batch_size, length, depth / num_heads] x heads] """ sz = x.size() # x -> [batch_size, length, heads, depth / num_heads] x = x.view(sz[0], sz[1], num_he...
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def get_n_s(num): """ Get a string for a float at .2f """ if num == None: return 'None' return "%.2f"%num
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import typing import pathlib def is_path_obj(obj: typing.Any) -> bool: """Is given object 'input' a pathlib.Path object? :param obj: a pathlib.Path object or something :return: True if 'obj' is a pathlib.Path object >>> obj = pathlib.Path(__file__) >>> assert is_path_obj(obj) >>> assert not ...
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def dict_fetch_all(cursor): """ Return all rows from a cursor as a dict. By default, the Python DB API will return results without their field names, which means you end up with a list of values, rather than a dict. At a small performance and memory cost, we can return results as a dict. Using ...
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def mongo_load(database, collection_key, id_key): """Load data from MongoDB database. Args: database (:class:`pymongo.database.Database`): MongoDB database to save results to. collection_key (str): name of collection. id_key (str): id key to look up data. Returns: ...
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import math def evaluate_almost_equal(metrics, results, abs_tol=None, rel_tol=None): """ Evaluate for each given metric if values in results are almost equal Parameters ---------- metrics: List[str], metrics names results: dict, results to be evaluated abs_tol: float, absolute error tolera...
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def _vector_to_matrix(Rv, k): """ Returns a matrix from reforming a vector. """ U = Rv.reshape((-1, k)) return U
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import keyword def is_correct_variable_name(string: str) -> bool: """ Check if string is a valid variable name and is not a reserved keyword. :param string: string to check :return: True/False """ return string.isidentifier() and not keyword.iskeyword(string)
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def premier(x): """ Prédicat indiquant si un nombre est premier :param x: Nombre entier positif :returns: True si l'entier `x` est premier, False sinon """ if x < 2: return False for y in range(2, x): if (x % y) == 0: return False return True
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import itertools def unpack_default(iterable, length=3, default=None): """ Unpacks given iterable maintaining given length and filling missing entries with given default. Parameters ---------- iterable : object Iterable. length : int Iterable length. default : object ...
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def coding_problem_02(l): """ Given an array of integers, return a new array such that each element at index i of the new array is the product of all the numbers in the original array except the one at i. Solve it without using division and in O(n). Example: >>> coding_problem_02([1, 2, 3, 4, 5...
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def format_timedelta(td): """Format td in seconds to HHH:MM:SS.""" td = int(td) hours, remainder = divmod(td, 3600) minutes, seconds = divmod(remainder, 60) return '{:03}:{:02}:{:02}'.format(hours, minutes, seconds)
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def InitItemMutator(*item): """Initialize an item in a dict/list if it does not exists or is None. If more than one item, create the full hierarchy""" def m(current, value): # plist, plast = item[:len(item)-1], item[len(item)-1] plist, plast = item[:-1], item[-1] if current is None: ...
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