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import os from pathlib import Path import shutil def copy_files(path_pairs): """Copy files and directories to specified new locations path_pairs should be a list of [Path(src), Path(dst)] """ def is_older(path_1, path_2): return path_1.stat().st_mtime < path_2.stat().st_mtime def copy_di...
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def drake(Rs, fp, ne, fl, fi, fc, L): """ Ecuación de Drake. Parámetros ---------- Rs : float Tasa anual de formación de estrellas en la galaxia. fp : float Fracción de estrellas que tienen planetas en su órbita. ne : float Número de esos planetas orbitando d...
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def tile_to_quadkey(tile_x, tile_y, level): """This is a function that converts tile coordinates at a certain level of detail of a Bing Map to a unique string identifier (QuadKey). :param tile_x: The x axis coordinate of the tile at `level` level of detail :param tile_y: The y axis coordinate of th...
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import sqlite3 def create_abundance_dict(database, datasets): """Process the abundance table by dataset in order to create a dictionary data structure organized like this: transcript_ID -> dataset -> abundance in that dataset """ abundance = {} conn = sqlite3.connect(database) ...
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import pkg_resources import pathlib def _get_ee_sources_path() -> str: """Gets the ee-sources folder path. Returns: The ee-sources folder path. """ ee_extra_py_file = pkg_resources.resource_filename("ee_extra", "ee_extra.py") pkgdir = pathlib.Path(ee_extra_py_file).parent return pkgdi...
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def merge_optional_trees(tree, big_tree): """Merge two MacroConditionTrees when one or both objects may be `None`.""" if tree is not None: if big_tree is None: return tree else: return big_tree.merge(tree) else: return big_tree
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def do_move (move, facing, x, y): """calculate new move location""" valid_move = True if facing == 'N': if move == 'forward' and y > 0: y -= 1 elif move == 'left' and x > 0: x -= 1 facing = 'W' elif move == 'right' and x < 5: x += 1 ...
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def tones(last, length = 16, **kwargs): """ produces a palette varying from the base color to grey """ r, g, b = last.rgb m = max(r, g, b) if r == m: r = m else: r += m/(length+1) if g == m: g = m else: g += m/(length+1) if b == m: b = m else: b += m/(length+1) return r, g, b
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def ibis_test_file(tmp_path): """Return a golden ibis model file to test with.""" ibis_file = tmp_path.joinpath("test.ibs") with open(ibis_file, "w", encoding="UTF-8") as output: output.write( r"""[IBIS Ver] 5.1 [File Name] example_tx.ibs [File Rev] v0.1 [Date] 2019-02-10 ...
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def csrf_token(): """Dummy implementation for older versions of Django""" # Should be deprecated, Django versions prior to 1.2 aren't supported # anymore. return u''
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import socket import sys def _create_udp_socket(): """Create a UDP socket for usage with a datagram endpoint.""" sock = socket.socket(socket.AF_INET, socket.SOCK_DGRAM, socket.IPPROTO_UDP) # Python says this is unsafe, but we need it to have # multiple servers live on the same host. sock.setsockop...
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def _calc_trsp_at_density_levels(trsp_ds, rho_w, rho_s, ufld, vfld, lat=None): """Helper function to compute transport at binned density levels given the maskW and maskS. Extracted here to do the same operations for latitude or section masks Parameters ---------- trsp_ds : xarray Dataset ...
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def tower(n): """computes 2^(2^(2^...)) with n twos, using recursion""" if(n==0): return 1 return 2**tower(n-1)
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def convert_feature_to_vector(feature_list): """ :param feature_list: :return: """ index = 1 xt_vector = [] feature_dict = {} for item in feature_list: feature_dict[index] = item index += 1 xt_vector.append(feature_dict) return xt_vector
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import re def _single_quote_strings(sql: str) -> str: """Replace unquoted double-quotes with single-quotes.""" return re.sub(r"(?<![\\])\"", "'", sql)
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import os def count_files_in_dir(dirpath): """ Counts the number of files contained in the specified directory. :param dirpath: Path to the directory :return: Number of files """ return len( [ name for name in os.listdir(dirpath) if os.path.isf...
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def random_state_tuple_axis_1(request): """ Specific to `test_sample*_axis_1` tests. A pytest fixture of valid `random_state` parameter pairs for pandas and cudf. Valid parameter combinations, and what to check for each pair are listed below: pandas: None, seed(int), np.random.RandomState ...
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def _mul(x, y): """ Multiply x and y. :param x: First element :param y: Second element :return: The multiplication result of x and y. """ return x * y
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import subprocess def ping(host): """ Checks if ping is possible and its response """ ret = subprocess.run( ['ping', '-c 3', '-w 5', host ], capture_output=True, ) return ret
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def is_overlap(object1, object2): """Detects overlap between two rectangles. Taking two objects, detects whether they overlap. Assumes the presence of the following attributes: - x - y - width - height Tests whether the rectangles are above/below each other, or left/right of ea...
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def lst_depth(lst): """Check max depth of nested list.""" if isinstance(lst, list): return 1 + max(lst_depth(item) for item in lst) return 0
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import argparse import sys def parse_args(args): """Parse command-line arguments. Parameters ---------- args : list of strings command-line arguments. Returns ------- options : :class:`argparse.ArgumentParser` Command line arguments. """ parser = argparse.Argumen...
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import importlib def get_classifier(name, params): """ Returns an instance of a classifier based on a string of the package and parameters from the yaml experiment """ module_name, class_name = name.rsplit('.', 1) module = importlib.import_module(module_name) clf = getattr(module, class_name) ...
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def is_operator(node): """This function checks whether a validation node is an operator or not. Args: node(str): The node key you want to check. Returns: : bool. """ return node.startswith('$')
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def hide(obj): """ Mark object as private. """ obj._spec__is_private = True return obj
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import math def logmgf_exact_party_level(q, noise_eps, l, k, max_q): """Computes the logmgf value given q and privacy eps. The bound used is the min of three terms. The first term is from https://arxiv.org/pdf/1605.02065.pdf by extending to k partitioning. The second term is from our paper. The th...
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def parse_logs_covdist_all_base(fname): """Parses _covdist_all_base_table.txt _covdist_all_cpg_table.txt _covdist_q40_base_table.txt _covdist_q40_cpg_table.txt Inputs: fname - filename of table Returns: data - dictionary of coverage distributions up to 30X data ...
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import re def remove_punctuation(body): """ - Removes punctuation, symbols, and numbers - Changes to lower case - Strips new lines and extra spaces Args: body: a body of text Returns: A string with clean-up procedures applied """ punctuation_removed = re.sub(r'[^\sa-zA-...
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from typing import List import os def get_dir_names(path: str) -> List[str]: """ Returns the dir names inside directory specified by path. """ return [dir_name for dir_name in os.listdir(path) if \ os.path.isdir(os.path.join(path, dir_name))]
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import os def fileparts(filepath): """ Splits into dirname,base,ext """ dirname,baseall = os.path.split(filepath) base,ext = os.path.splitext(baseall) return dirname,base,ext
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from pathlib import Path import argparse def check_file(fn): """Validate that the file exists and is readable.""" fp = Path(fn) if not fp.exists(): raise argparse.ArgumentTypeError(f"{fp!r} does not exist.") elif not fp.is_file(): raise argparse.ArgumentTypeError(f"{fp!r} is not a file...
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import json def get_job_payload(id): """ Retrieves JSON payload of the job from the assets folder Arguments: None Returns: Job's JSON payload {dict} """ payload_path = "assets/payload" + str(id) + ".json" with open(payload_path, 'r') as f: ...
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def convertToCPM(dose, period): """ Converts from milliSieverts/hr to CPM Parameters: dose (double): The dosage period (double): The time period over which the dosage is administered Returns the measurement in CPM """ conversionFactor = 350000 / 1.0 return conversionFactor * dose / period
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def cut_column(ser): """Determine two sets of indices identifing the values to be stored in left and right partitions after the cut. :ser: Pandas series """ if ser.dtype.name in ('object', 'category'): frequencies = ser.value_counts() pos = len(ser) // 2 median_idx = lc = 0 ...
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from typing import List def _read_from_path(config:dict, path:List[str]): """Reads nested dictionary. Eg `_read_config({'foo':{'bar':1}}, ['foo','bar']) = 1` """ if len(path) == 1: return config[path[0]] return _read_from_path(config[path[0]], path[1:])
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import os def get_info_dict(data_dir): """ idir: original data root, egs: dev-clean return: wav_info, dict, wave_info[spk]=[wav1_path, wav2_path, wav3_path...] """ wav_info = dict() entries = os.listdir(data_dir) for spk in entries: wav_name = [] cdir = os.p...
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def read_asteroids(filename): """Returns a list of asteroid locations in the map provided in the file Parameters ---------- filename : str path/name of file that contains the asteroid map """ asteroids = [] with open(filename, "r") as f: lines = f.read().splitlines() ...
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def should_cache_download(url: str) -> bool: # pragma: no cover """ Determine whether this specific result should be cached. Here, we don't want to cache any files containing "-latest-" in their filenames. :param url: url string which is used to decide if result is cached :return: When cache shou...
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import math def find_threshold_time(neighbours_by_space, node_paired_unpaired, case): """ 1. Arguments: "neighbours_by_space" = dictionary having the keys as the node no.s and values as their corresponding neighbours in space coordinates only "node_paired_unpaired" = dictionary containing i...
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def smallest_with(expr, symbol): """ Return the smallest sub-tree in an expression that contains a given symbol. """ assert symbol in expr.free_symbols candidates = [arg for arg in expr.args if symbol in arg.free_symbols] if len(candidates) > 1 or candidates[0] == symbol: return expr ...
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def dict_differs_from_spec(expected, actual): """ Returns whether all props in "expected" are matching in "actual" Note that "actual" could contain extra properties not in expected """ for k, v in enumerate(expected.items()): if not k in actual: return False if actual[k] != v: return False return True
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def quicksort(arr): """ qucik sort by py """ if len(arr) <= 1: return arr pivot = arr[len(arr) // 2] left = [x for x in arr if x < pivot] middle = [x for x in arr if x == pivot] right = [x for x in arr if x > pivot] return quicksort(left) + middle + quicksort(right)
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def pipe_commands(commands): """Pipe commands together""" return ' | '.join(commands)
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def upper(text): """A tag/function/filter that converts `text` to uppercase. Inner tag names and attributes are converted, too (!).""" return text.upper()
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def neuron_cal_pd_total_net_input_wrt_weight(neuron, index): """ # The total net input is the weighted sum of all the inputs to the neuron and their respective weights: # = zⱼ = netⱼ = x₁w₁ + x₂w₂ .... The partial derivative of the total net input with respective to a given weight # (with everything els...
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def parseColorLine(ls, keys, flags=set()): """ >>> parseColorLine("CODE 0 VALUE #05131D FOO".split(), {"CODE", "VALUE", "EDGE", "BAR"}) ({'CODE': '0', 'VALUE': '#05131D'}, set()) """ d = {} s = set() for idx, val in enumerate(ls): if val in keys and idx+1 < len(ls): d[val...
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import json def get_json(x): """Convert Python dict to JSON. Convert Python dictionary into a JSON string. Args: x: Python dictionary Returns: JSON string """ return json.dumps(x)
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import re def song_meets_search_requirement( search, song, case_sensitive, authorized_types, ): """ Check that a song meets the settings """ if song["type"] not in authorized_types: return False # Check if search match with an anime name if ( song["type"] in ...
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def file_linear_byte_offset(image_size, bytes_per_voxel, start_coords): """ Return the file byte offset corresponding to the given coordinates. Files generally assumed to have the first dimension most rapidly changing Assumes you have a stream of bytes representing a multi-dimensional image, """ ...
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from typing import Optional import os import re def _find_most_recent_backup(normal_path: Optional[str]) -> Optional[str]: """ Find the most recent old settings to migrate. The input is the path to an unqualified settings file - e.g. /mnt/usbdrive/config/robotSettings.json This will return - Non...
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import functools def decorator(function): """Decorator""" #Eleganckie rozwiazanie problemu name i doc i przebijania sie ich od wrappera a nie funkcji opakowanej @functools.wraps(function) def wrapper(*args, **kwargs): """Wrapper""" answer = function(*args, **kwargs) return answer #Toporne rozwiazanie probl...
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def max_degree(graph): """ Return the maximum degree in the graph """ return max(graph.degree, key=lambda kv: kv[1])[1]
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def sequential(inputs, layers, ): """Applies a sequence of layers to an input.""" output = inputs for layer in layers.values(): output = layer(output) return output
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def unscramble(word, unscramble_map: dict) -> str: """ Takes a scrambled input word, and converts to unscrambled. Args: word (str): Scrambled input unscramble_map (dict): Map of scrambled char->unscrambled char """ return "".join(sorted([unscramble_map[char] for char in word]))
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def assert_params_all_zeros(module) -> bool: """Check if the parameters of the module is all zeros. Args: module (nn.Module): The module to be checked. Returns: bool: Whether the parameters of the module is all zeros. """ weight_data = module.weight.data is_weight_zero = weight_d...
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def generate_frequency_dicts(result_frame): """generated frequency dictionarys of phred quality. Args: result_frame: pandas result frame from pileup Returns: baseQ frequency dictionar,mapQ frequency dictionary """ baseQ = [result_frame.iloc[x, 13] for x in range(len(result_frame))...
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def ts_epoch(): """Timestamp as epoch timestamp.""" return 1451606400000
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import os def format_dt(string): """ Formats datetime string to os appropriate format """ if os.name == 'nt': return string.replace('-', '#') else: return string.replace('#', '-')
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def chinese_literature_ent_type_process_fn(d): """Not match my need Arguments: d {[type]} -- [description] Returns: [type] -- [description] """ ent_type = d.split(' ')[1].replace('\n', '') return ent_type
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from typing import Dict def flip_dictionairy(dictionairy:Dict[str, str]) -> Dict[str, str]: """ Flips the dictionairy. Self explanatory. """ keys = list(dictionairy.keys()) values = list(dictionairy.values()) flipped_dict = {} for i in range(len(keys)): flipped_dict[values[i]] = ...
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def choose_hp(q_ideal, t_biv=-2, method=0, hp_type='aw', t_ground=10): """ Choose heat pump depending on desired thermal power and bivalence point Method 0: Return best possible Heat Pump with average COPs Method 1: Choose heat pump from catalogue of existing devices (source: Dimplex) Parameters ...
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def capitalize(wordList, spacer): """ Generally, capitalize all words for discover """ return spacer.join(word.capitalize() for word in wordList) if isinstance(wordList, list) else wordList.capitalize()
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def check_prompts(device_list): """check to verify prompt of devices.In order to ensure, that all processes were killed by previous test, before running a new test. :param device_list: List of devices to check :type device: List """ for dev in device_list: assert "FOO" in dev.check_outp...
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import argparse def getInput(): """ Collects input from parser @ In, None @ Out, args, argparse.parser, dict-like argument interface """ parser = argparse.ArgumentParser(description='RrR Test Code') parser.add_argument('-i', type=str, help='main input file') args = parser.parse_args() return a...
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def _lcss_point_dist(x, y): """ Parameters ---------- x: nd-array Time series x (query). y: nd-array Time series y. Returns ------- The LCSS distance. """ dist = 0.0 for di in range(x.shape[0]): diff = x[di] - y[di] dist += diff * diff ...
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def rule_dict(item): """Make a Python dict from a PDF page label rule. Args: item -- a tuple (pno, rule) with the start page number and the rule string like <</S/D...>>. Returns: A dict like {'startpage': int, 'prefix': str, 'style': str, 'firstpagenum': int}. ""...
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def prepend_parts(parts_prefix, n): """ Recursively preprend parts_prefix to the parts of the node n. Parts is a list of markers that indicates where you are in the regulation text. """ n.label = parts_prefix + n.label for c in n.children: prepend_parts(parts_prefix, c) return n
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def read_famipc_fnames(): """ Return a sorted list of FAMIPC5 CESM history filenames """ f_in = 'famipc5_hist_files.txt' with open(f_in, 'r') as f: lines = f.readlines() lines = [x.strip() for x in lines] return sorted(lines)
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import warnings import copy def clone_trainer(trainer, is_reinit_besides_param=False): """Clone a trainer with optional possibility of reinitializing everything besides parameters (e.g. optimizers.)""" with warnings.catch_warnings(): warnings.simplefilter("ignore") trainer_new = copy.deep...
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def onlydigits(value): """ Filtre `value` pour ne garder que les chiffres. On peut ainsi retirer toutes les sauts de lignes présents dans le fichier `score.txt`. Parameters ---------- value : str La chaîne à filtrer Returns ------- str La chaîne obtenue après f...
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import binascii def yara_image_generator(self) -> list[dict[str, str]]: """ puts the data in a format that we need for later in the process returns dict_list """ dict_list = [] if self.image_name is not None: for file_type in self.image_name: for match in self.get_file[1][file_typ...
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def calculate_number_of_needs(row, case_id_col, reindexed_need): """ Given a case id, returns the number of needs associated """ case_id = row[case_id_col] rows = reindexed_need.ix[[case_id]] return len(rows)
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def get_same_padding(kernel_size): """Return SAME padding size for convolutions.""" if isinstance(kernel_size, tuple): assert len(kernel_size) == 2, 'invalid kernel size: %s' % kernel_size p1 = get_same_padding(kernel_size[0]) p2 = get_same_padding(kernel_size[1]) return p1, p2 ...
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def _tofloat(obj): """Convert to float if object is a float string.""" if "inf" in obj.lower().strip(): return obj try: return int(obj) except ValueError: try: return float(obj) except ValueError: return obj
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def rtf_encode(text): """ Convert unicode text to rtf format with substitution of non-ascii characters. (Based on Martijn Pieters' code.) """ return ''.join(['\\u%i?' % (ord(e) if e < u'\u8000' else ord(e) - 65536) if (e > '\x7f' or e < '\x20' or e in u'\\{}') else str(e) for e in text])
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from pathlib import Path def get_project_path(project_name: str) -> Path: """Get the assets project path for the given project name (with no ".flxproj"). If you want to open the project, please use open_project() or copy_project() instead, as they will copy the project to a temporary directory and clean ...
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def mirror_from(source, attributes, only_getters=True): """Decorator (factory) for classes that mirror some attributes from an instance variable. :param source: the name of the instance variable to mirror from :param attributes: list of attribute names to mirror :param only_getters: if true only ge...
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def get_netcdf_response(coverage_offering, dataset, crs): """Uses a standard xarray function to create a bytes-like data stream for http response""" dataset.attrs['crs'] = crs return dataset.to_netcdf()
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import secrets def criar_token(): """ Cria um token somente com números e letras. """ token = secrets.token_urlsafe(6) while ('-' in token or '_' in token): token = secrets.token_urlsafe(6) return token
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def fatorial(n, show=False): """ -> Calcule um fatorial de um número. para n1: O número a ser calculado. para show: (opcional). Mostrar ou não a conta. :return: O valor do fatorial de um número. Criado por Tom Alves. """ if show == True: f = 1 cont = 0 for c in r...
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def echo(s): """Return the string passed in.""" return "We are echoing: %s" % s
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import math def round_up(x, near): """ Round x to nearest number e.g. round_up(76, 5) gives 80 Args: x: Number to round-up near: Number to which round-up to Returns: rounded up number """ return int(math.ceil(float(x) / float(near))) * near
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def get_penalty(start_time, submit_time): """ :param start_time: time in DateTimeField :param submit_time: time in DateTimeField :return: penalty in seconds """ return max(int((submit_time - start_time).total_seconds()), 0)
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def getDimDict(seed, dim, labels=False): """ make a column dictionary for one of the dimensions of a query seed. this dictionary is often used to recode a column in a Spark DataFrame either via SQL or a python user-defined function (udf) e.g. We may want to recode the DHCP_HHGQ schema's 'hhgq' dimensio...
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from functools import reduce def model_summary(model): """ 得到模型的总参数量 :params model: Pytorch 模型 :return tuple: 包含总参数量,可训练参数量,不可训练参数量 """ train = [] nontrain = [] def layer_summary(module): def count_size(sizes): return reduce(lambda x, y: x * y, sizes) for...
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def cleanFilePaths(file, listOfResults, type=None): """ Constructs the data which consists of a dictionary within a dictionary. The first level has keys that are the data file name, and the second level contains two keys: saved and read. Within 'saved' and 'read' are a list that contains the scripts...
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def to_sting(reads): """join FASTQ reads to a single DNA string""" return ''.join(i for i in reads)
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def qe_at(df, energy): """ Extracts QE at the specified energy. """ return df[df.E >= energy].sort_values(by='E', ascending=True).iloc[0].QE
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def unit(*args): """ Create a unit dictionary. Call with (abbreviation, name, units) or (abbreviation, name, plural name, units). If the plural name is not given, it is calculated by adding "s" to the singular name. Note that the abbreviation, name, plural name (if given) and unit...
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def URLFIX(df, find_string, replace_string, columns): """Use this to fix path URL issues between operating systems""" for col in columns: df[col] = df[col].str.replace(find_string,replace_string) print(df[col][1]) return(df)
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def dot(u1,u2): """ Dot product of two vectors """ return u1[0]*u2[0] + u1[1]*u2[1] + u1[2]*u2[2]
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def train_test_split(df, train_proportion=0.7): """Split dataset into training and testing sets""" # Index before which data will be used to training, and after which will be used for testing split_index = int(df.shape[0] * train_proportion) training = df.loc[:split_index, :] testing = df.loc[spli...
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import os def _disable_recording(): """Disable VCR.py integration.""" return os.getenv("RECORD", "false").lower() == "none"
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def exists_jpg_extension(files): """Checks whether any file in files is a jpg image Args: files: List of filenames Returns: True if any file is a jpg otherwise False """ has_jpg_extension = ['jpg' in fname for fname in files] return any(has_jpg_extension)
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def format_transaction(timestamp: float, address: str, recipient: str, amount: int, operation: str, openfield: str): """ Returns the formatted tuple to use as transaction part and to be signed This exact formatting is MANDATORY - We sign a char buffer where every char counts. """ str_timestamp = '%....
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def detect_result_post_process(_detect_result, _detector_model_type): """ 对检测的结果根据检测算法类型进行后处理 :param _detect_result: 检测结果 :param _detector_model_type: 检测模型的类型 :return: 后处理后的结果 """ to_return_polygons = [] if _detector_model_type in {'pse', 'pan'}: # 对label map进行多边形抽取以及聚合 ...
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import string def num_to_str(num, b=36, numerals=string.digits + string.ascii_lowercase): """ Converts integer num into a string representation on base b @param b {int} base to use @param numerals {string} characters used for string representation @returns {string} string representation of num in ...
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def UppercaseMutator(current, value): """Uppercase the value.""" return current.upper()
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from functools import reduce def specfile_changed(body: dict) -> bool: """ Does the commit contain specfile change? :param body: message body :return: bool """ files = reduce( lambda val, key: val.get(key) if val else None, ["commit", "stats", "files"], body, ) ...
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import unicodedata def clean_unicode(value): """ Attempts to normalize a string to a nonunicode value :param value: the value to be cleaned of unicode characters :type value: str :return: a mangled key """ try: cleaned_value = str(value) except UnicodeEncodeError: cleaned...
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