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import os def remove_file(file_name): """ removes this file from disk. :param file_name: <str> file path name. :return: <bool> True for success. :raises: <OSError> invalid file path. """ os.unlink(file_name) return True
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def check_segment_segment_intersection(x1, y1, x2, y2, x3, y3, x4, y4): """ Check if two segments overlap. If they do, return t, the time in the first line's 0 <= t <= 1parameterization at which they intersect """ denom = (x1 - x2) * (y3 - y4) - (y1 - y2) * (x3 - x4) if (denom == 0): return None t = ((x...
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def nodeid(node): """Given a node, tries to return a way to see where it was in the source text""" fname = 'UNKNOWN' line = 'UNKNOWN' try: if node.line: line = str(node.line) except Exception: pass try: if node.source: fname = str(node.source...
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def seconds_until_start(start_time, current_time): """Return the number of seconds until start time""" difference = start_time - current_time return difference.seconds
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def _format_color_dict(cd, format): """ format: 'RGB': list of (R,G,B) tuples 'HEX': list of #HEX strings """ if format == 'RGB': # convert into a list of (R,G,B) tuples return list(zip(*(cd[k] for k in 'rgb'))) else: return cd['hex']
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def n_subsystems(request): """Number of qubits or qumodes.""" return request.param
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def compute_fuel(mass: int): """Read input module value and compute the fuel Parameters ---------- mass : [int] The mass of each module Returns ------- [int] Fuel for each module based on mass fuel = round(mass/3) - 2 """ return round(mass // 3) - 2
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import base64 def img_stream_to_b64str(stream, urlsafe=False): """ Convert a byte stream of image file to Base64 encoded string. :param stream: The byte stream of the file. :param urlsafe: Trigger using URL-Safe format. :return: Encoded Base64 string. """ if urlsafe: stream_base64 ...
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def distance_home(x, y): """ >>> distance_home(0, 0) 0 >>> distance_home(3, 3) 3 >>> distance_home(-3, 3) 3 >>> distance_home(0, 8) 4 """ x, y = abs(x), abs(y) steps = 0 while x != 0 or y != 0: if y > x: y -= 2 steps += 1 elif...
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def get_theta_hat_bw_sum_cm2(theta_hat_bw_sum_cm1, theta_hat_bw_win_cm1, theta_hat_bw_win_cm2): """制御モードcmの夏期条件におけるM1スタンダードモード沸き上げ温度(℃)(27a-2) Args: theta_hat_bw_sum_cm1(float): 制御モードがファーストモードの場合の夏期条件におけるM1スタンダードモード沸き上げ温度 theta_hat_bw_win_cm1(float): 制御モードがファーストモードの場合の冬期条件におけるM1スタンダードモード沸き上げ温度 ...
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import os import glob import gzip import tempfile import tarfile import re import codecs import shutil def extract_output(output_dir): """Extract the text of the a1, a2, and sentence segmentation files from the TEES output directory. These files are located within a compressed archive. Parameters ---...
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def area(circle): """Get area of a circle""" return circle.get('radius') ** 2 * 3.14159
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def no_series(): """ Formats error message for event with missing series. :return: error message :rtype: str """ error = "event(s) without a series" return error
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def get_reference_source(lockin): """Get the reference source. Return either internal (1) or external (0). args: lockin (pyvisa.resources.gpib.GPIBInstrument): SRS830 returns: (int): 1 for internal, 0 for external. """ return int(lockin.query("fmod?").split("\n")[0])
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import os def find_bzr(path=None): """ Return bzr root directory path, or None. """ if not path: path = os.getcwd() if not os.path.exists(path): return None while path: if os.path.exists(os.path.join(path, '.bzr')) or \ os.path.exists(os.path.join(path, '.bzrignore')...
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def get_normalized_intensity(peak_intensity, normalization_factor): """ Normalize using highest theoretical envelope intensity""" normalized_intens = peak_intensity/normalization_factor return normalized_intens
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from datetime import datetime def get_tag(tag=None): """ Simple helper function to create a tag for saving a file if one does not already exist. This is useful because in some places we don't know whether we will have a tag or not, but still want to save files. Parameters ---------- tag ...
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def array_to_dict(rows, key="openstack_id"): """ Convert a list of dicts into a dict based on key""" result = {} for row in rows: key_value = row.pop(key) result[key_value] = row return result
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def bevel_3d(point): """ Which of the eight corner plane(s) is point P outside of? """ corner_plane_code = 0 if (point[0] + point[1] + point[2]) >= 1.5: corner_plane_code |= 0x01 if (point[0] + point[1] - point[2]) >= 1.5: corner_plane_code |= 0x02 if (point[0] - point[1] + p...
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from pathlib import Path def data_path(): """Return a path relative to the test data folder""" this_file = __file__ return (Path(this_file).parent / 'data').resolve()
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def is_(t, x): """ Check whether the type of a given x is a given type t. """ return type(x) is t
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import os def get_search_path(session): """ Return the complete data path used when searching for data files. """ # Automatically add ./botocore/data to the # data search path. builtin_path = os.path.join( os.path.dirname( os.path.dirname( os.path.abspa...
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import torch def entropy(p, reduction='mean'): """ p: (..., n, n) Returns: avg Note: Max entropy of n x n matrix is n\log(n) """ n = p.size(-1) eps = 1e-10 entropy = -(p * torch.log2(eps+p)).sum(dim=[-2,-1]) if reduction is None: return entropy elif reduction == 'sum': ...
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import socket def dnsname(ip): """Returns the DNS hostname of the provided IP address if it's in DNS (PTR record)""" try: return socket.gethostbyaddr(ip)[0] except: return 'null'
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def complex_filter_set(): """ A filter set with 3 filter_blocks and a flag """ return { 'title': 'Test filter set', 'search_type': 'Variant', 'filter_blocks': [ { 'query': 'ALT=T&hg19.hg19_chrom=chr1', 'flags_applied': ['variant_chrom'] ...
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def get_right_end(read_seq, cigar, args): """ Gets the right end of the alignment, taking 'check_in_soft' number of nucleotides from the softclip and check_in_match number of nucleotides from the mapped part. """ # here I first calculate the length of the read and I # substract the length of the cl...
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import csv def create_ipmi_host_services(robot, data_file): """Creates the ipmi host services Arguments: robot {ZRobot} -- Robot instance data_file {str} -- Location of CSV file Returns: [str] -- List of host service names created """ hosts = [] with open(data_fi...
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def _torch_sqrt(x, eps=1e-12): """ A convenient function to avoid the NaN gradient issue of :func:`torch.sqrt` at 0. """ # Ref: https://github.com/pytorch/pytorch/issues/2421 return (x + eps).sqrt()
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def pytest_ignore_collect(path, config): # pylint: disable=unused-argument """Determine if this directory should have its tests collected.""" if config.option.functional: return True return config.option.integration_only
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def _holt_init(x, xi, p, y, l, b): """Initialization for the Holt Models""" p[xi.astype(bool)] = x alpha, beta, _, l0, b0, phi = p[:6] alphac = 1 - alpha betac = 1 - beta y_alpha = alpha * y l[:] = 0 b[:] = 0 l[0] = l0 b[0] = b0 return alpha, beta, phi, alphac, betac, y_alpha
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import pandas def get_last_oid(csv): """Get last OID from CSV so we can continue where we left off""" df = pandas.read_csv(csv) return int(df.tail(1).OID)
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def first_differences(signal): """The mean of the absolute values of the first differences of the raw signal""" # build the first differences list first_diff = [] for i in range(0,len(signal)-1): first_diff.append(abs(signal[i+1]-signal[i])) fd_sum = sum(first_diff) delta = float(fd_sum)/(len(signal)-1) retur...
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import os def filter_pathext(val): """Extension of a path (including the '.').""" return os.path.splitext(val or '')[1]
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def extract_components_from_flow(flow): """Given a versionedFlowSnapshot object, extract out the processors and create a list of tuples where each tuple is (component name, component version)""" extract = lambda p: (p["bundle"]["artifact"], p["bundle"]["version"]) return [ extract(p) for p in flow["...
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from typing import Optional def __construct_engine_url(dialect: str, driver: Optional[str], username: Optional[str], password: Optional[str], host: Optional[str], port: Optional[str], database: Optional[str]) -> str: """dialect+driver://username:password@host:port/database""" result...
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import argparse from datetime import datetime import sys def parse_args(args): """Argument parsing for run_covidnet_ct.py""" parser = argparse.ArgumentParser(description='COVID-Net CT Train/Test/Infer Script') parser.add_argument('-md', '--model_dir', type=str, default='models/COVID-Net-CT-A', help='Model...
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import re def format(changelog): """Clean up changelog formatting""" changelog = re.sub(r"\n\n+", r"\n\n", changelog) return re.sub(r"\n\n+$", r"\n", changelog)
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def get_path_upload_avatar(instance, file) -> str: """ Построение пути к файлу аватара, format: (media)/avatar/user_id/photo.jpg """ return f'avatar/user_{instance.id}/{file}'
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def my_extract(value, delim=',', index=0): """Split a given string and return value at given index position.""" return value.split(delim)[index]
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import argparse def parse_args(): """ Parses command line arguments :return: parsed arguments """ parser = argparse.ArgumentParser(description='Audio stream classifier') parser.add_argument('model') parser.add_argument('--labels', nargs=2) parser.add_argument('--frame_size', type=int, defa...
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def parse_percent(val): """Turns values like "97.92%" into 0.9792.""" return float(val.replace('%', '')) / 100
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def log_target_types(all_logs=False, **kwargs): """ Log targets for log tasks. A log target defines the log types that will be affected by the operation. For example, when creating a DeleteLogTask, you can specify which log types are deleted. :param bool for_alert_event_log: alert events traces...
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def get_node_availability(name,jlines): """ calculates the node availability by reading the generated dump file adding together the uptime of the node and returning the time parms: name - node name jlines - list of already parsed dictionaries node archive """ begin = last = current = 0 up...
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def mblg_to_mw_johnston_96(mag): """ Convert magnitude value from Mblg to Mw using Johnston 1996 conversion equation. Implements equation as in line 1654 in hazgridXnga2.f """ return 1.14 + 0.24 * mag + 0.0933 * mag * mag
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from PIL import Image import PIL.ImageOps def invert_texture(inpath, outpath, workingImage, settings): """Inverts the colors on the texture specified""" print("Inverting texture: " + inpath) image = Image.open(inpath) inverted_image = None try: inverted_image = PIL.ImageOps.invert(image) ...
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import re def contains_only_vowels(input_str): """Receives input string and checks if all chars are VOWELS. Match is case insensitive.""" if re.search(r"^[aeiou]+$", input_str, re.IGNORECASE): return True else: return False
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def interactions(G, nbunch=None, t=None): """Return the list of edges present in a given snapshot. Edges are returned as tuples in the order (node, neighbor). Parameters ---------- G : Graph opject DyNetx graph object nbunch : ite...
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def weasyl_sysname(target): """Return the Weasyl sysname for use in a URL for a given username.""" return ''.join(i for i in target if i.isalnum()).lower()
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def allsky_off_region(pix, pix_center, on_region_mask, size, nside=64): """ All sky off region """ return ~on_region_mask
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def set_of_words2vec(vocab_list, input_set): """ 句子转换为向量,如果字典中有这个词则将该单词置1,否则置0 :param vocab_list: 所有单词集合列表 :param input_set: 输入数据集 :return: 匹配列表[0,1,0,1...],其中 1与0 表示词汇表中的单词是否出现在输入的数据集中 """ # 创建一个和词汇表等长的向量,并将其元素都设置为0 result = [0] * len(vocab_list) # 遍历文档中的所有单词,如果出现了词汇表中的单词,则将输出的文档向...
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def by_date_range(analysis, from_timestamp, to_timestamp): """ Filters list of analysis objects with attribute "createdDate". Returns a new list of analyses objects that were created between from_timestamp and to_timestamp :param analysis: :param from_timestamp: unix timestamp (float) :param to_...
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def toggle_collapse_tab2(n, is_open): """ :return: Open top 10 games fact table on tab 2 if clicked. """ if n: return not is_open return is_open
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def deco(func): """ deco @param func: @return: """ def inner(): print('running target()') return inner
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import torch def log_bound_and_scale(scale, bounds): """ Scale, de-log, and bound Args: scale (torch.tensor): divide input by this value, then take exp bounds (torch.tensor): tuple, clamp to (bounds[0], bounds[1]) """ return lambda x: torch.clamp(torch.exp(x / scale), bounds[0]...
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def make_progress_bar(title, value, rank, max_FAAB=100): """Makes progress bar with label and value :param title: string label for progress bar :param value: value for bar :param rank: rank to label the value :param max_FAAB: max FAAB budget if using faab :return: html progress bar """ ...
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def import_deep_distortion_by_type(defect_list: list, fancy_defects: dict, ): """Imports the ground-state distortion found for a certain charge state in order to try it for the other charge states. Args: defect_list (list): ...
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import struct import binascii def make_chunk(chunk_type, chunk_data): """Create a raw chunk by composing chunk type and data. It calculates chunk length and CRC for you. :arg str chunk_type: PNG chunk type. :arg bytes chunk_data: PNG chunk data, **excluding chunk length, type, and CRC**. :rtype: bytes """ out...
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def create_groups(jobs): """Group jobs that will be executed in one step. This returns a list of lists. Each list starts with the 'primary' job. This job is the ONLY job that has to be executed. But note that when you submit jobs to a cluster, all jobs of a group have to be submitted. Note that the ...
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def get_version(c): """ Get current project version from setuptools """ return c.local('python setup.py --version').stdout.strip()
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def is_iterable(value): # noinspection PyUnresolvedReferences """ Returns ``True`` if *value* is an iterable container (e.g. ``list`` or ``tuple`` but not a **generator**). Note that :func:`is_iterable` will return ``False`` for string-like objects as well, even though they are iterable. The same a...
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def encrypt(plaintext, key, cipher): """ Using Vignere cipher to encrypt plaintext. :param plaintext: plaintext to encrypt with given key and given cipher :param key: the key is appended until it has same length as plaintext; each character of the key decides which cipher to use to ...
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from typing import List import glob import os import re def _sorted_checkpoints( model_dir, checkpoint_prefix="checkpoint", use_modification_time=False ) -> List[str]: """ Private method discovers model checkpoint directories within the global model_dir, returns a sorted list with directory paths. ...
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import inspect def is_class(object): """Check if the given object is a class""" return inspect.isclass(object)
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def init_guess_word(length): """ Returns the initial guess word state. The guess word is initialised with underscores, one for each letter of the target word. Args: length: the length of the target word Returns: The initialised guess word, a list of `length` underscores ...
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def gcp_histone_normalize(data_df, gcp_normalization_peptide_id): """Subtract values of gcp_normalization_peptide_id from all the other probes. Remove the row of data corresponding to the normalization histone. Assumes that all probes should be normalized to the same peptide id. Args: data_df ...
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def HHMM_to_dec_deg(HHMM): """Converts a string HHMM to decimal hours.""" return 15*(int(HHMM[0:2])+float(HHMM[2:4])/60.)
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def get_tagname(tags, tagid): """Get tag name from tag ID from extracted Ghost tags.""" for tag in tags: if tag['id'] == tagid: return tag['name']
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def aggregate_values_by_key(rdd): """Given an RDD in the form of: ``RDD[(0, 1), (0, 2), (1, 2)]`` Aggregate each key (first index in the tuple) into an RDD of keys to lists of all values associated with the key. Examples -------- >>> x = sc.parallelize([("a", 1), ("b", 1), ("a", 2)])...
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def generate_num_processes_default(AUTOMS_NUM_PROCESSES): """ Generates the default num processes parameter value to use using configured 'num processes' """ if AUTOMS_NUM_PROCESSES is None: num_processes_default = 1 else: num_processes_default = AUTOMS_NUM_PROCESSES return num_proces...
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def to_unit_vector(vector): """ Convert a vector to a unit vector. Parameter --------- vector: vector to convert (tuple(float, float)). Return ------ unit_vector: a unit vector between 1 and -1 (tuple(int, int)). Version ------- Specification: Nicolas Van Bossuyt (v1. 10/...
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import six def as_bool(val): """Converts an arbitary value into a boolean.""" if isinstance(val, bool): return val if isinstance(val, six.string_types): if val.lower() in ('f', 'false', '0', 'n', 'no'): return False if val.lower() in ('t', 'true', '1', 'y', 'yes'): ...
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from typing import List import numpy def remove_size_zero_matrices(list_matrices: List[numpy.ndarray]) -> List[numpy.ndarray]: """ Removes size zero matrices from a list :param list_matrices: A list of numpy arrays :return: returns all matrices from the list that do not have a dimension of 0 in any i...
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def Binary(string: str) -> bytes: # pylint: disable=invalid-name """constructs an object capable of holding a binary (long) string value.""" return string.encode()
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def populated_table(empty_table, request): """ Populate a table within the test database before executing test. The table will have the same name as the test_function itself. Setup and teardown of the database is handled by the unique_database fixture. Args: empty_table: pytest fixture that creates an e...
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def map(n, dep, arr, I = 0): """Remape la valeur n compris dans l'intervalle dep sur l'intervalle arr.""" (x, y) = dep (i, j) = arr res = ((n - x) * (j - i)) / (y - x) + i if I == 1: res = int(res) return res
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from typing import Counter def word_length_freq(text): """Returns the Count/Freq Distribution of Words by their length. Useful for stylometric mendelhall curve >>> word_length_freq(mytext) """ all_tokens_length = [len(token) for token in text.split()] count_of_n_length_word = Counter(all_tok...
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def get_ternary_label(df): """ get ternary label from nli labels """ nli2ternary = {"entailment": 1, "contradiction": -1, "neutral": 0, } return df.label.apply(lambda x: nli2ternary[x]).values
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import subprocess def run_cmd(cmd): """Run a command, capturing the output. Note: with Python 3.7 we could simplify this using (check=True, capture_output=True, text=True). """ print("\n>", *cmd) proc = subprocess.run(cmd, stdout=subprocess.PIPE, stderr=subprocess.PI...
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def vectors_approx_equal(v1, v2): # pragma nocover """ Check whether the vectors are approximately equal. This is used where there is VERY minor floating point differences that can occur in VPython. :param v1: Vector 1 :type v1: class:`vpython.vector` :param v2: Vector 2 :type v2: clas...
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def getOutputFilename(runId, TRindex): """"Return station classification filename""" filename = "percentChange_run-{0:02d}_TR-{1:03d}.txt".format(runId, TRindex) return filename
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def find_image(text: str) -> int: """Function to find if pdf has image only page. text: text version of pdf document return: 1 if image was found, 0 otherwise """ list_of_pages = text.split('\x0c')[:-1] page_number = 0 found_image = 0 while page_number < len(list_of_page...
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import time import sys def decode(model, data, verbose=True): """ decode the dataset and compute sentence level acc. and BLEU. """ hypotheses = [] begin_time = time.time() if type(data[0]) is tuple: for src_sent, tgt_sent in data: hyps = model.translate(src_sent) ...
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def paths_to_dot(paths, edge_legend=None, node_legend=None): """Given dependency paths, output in dot format for graphviz.""" if edge_legend is None: edge_legend = {} if node_legend is None: node_legend = {} edges = [] nodes = set() for edge in paths: style = '' i...
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def genDict(): """ Fonction qui génère un dictionnaire pour permettre la compression. :return dico: le dictionnaire contenant les caractères ASCII étendu et leur code en décimal. """ dico={} for i in range(0,256): dico.update({chr(i):i}) return dico
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def _totalValue(comb): """ Total a particular combination of items Args: comb tuple of items in the form (item, weight, value) Returns: tuple (total value, total weight) """ totwt = totval = 0 for item, wt, val in comb: totwt += wt totval += val return (totval, totwt)
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def default_income(time, dt, *args): """ Income method stub :param time: current simulation time :param dt: time step for which production limits are calculated :param args: additional arguments :return: 0 """ return 0
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from datetime import datetime def _match_to_dt(match): """ Build a datetime from a dictionary of information. These infos were given by re.match. >>> _match_to_dt({'Y': '2010', 'm': None}) datetime.datetime(2010, 1, 1, 0, 0) """ if not match: # Case where empty dictionary of match...
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import re def isValid(text): """ Returns True if the input is related to jokes/humor. Arguments: text -- user-input, typically transcribed speech """ return bool(re.search(r'\b(hello|hi|how are you|how\'re you|how are things|how\'re things|what\'s up|what is up|what\'s happening|w...
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def _uno_struct__eq__(self, that): """Compares two UNO structs. Referenced from the pyuno shared library. """ if hasattr(that, "value"): return self.__dict__["value"] == that.__dict__["value"] return False
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import torch import os def read_matches_files(data_dir: str, matches_file: str) -> torch.Tensor: """Return a Tensor containing the ground truth matches Read the file and keep only 3D point ID. Matches are represented with a 1, non matches with a 0. """ matches = [] with open(os.path.join...
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def post_process(games, name, title): """add title to platforms data, remove trailing comma""" # add platform info games[name][4] += title # remove trailing bar from release date info games[name][0] = games[name][0].strip(" | ").strip() # remove trailing comma from region info games[name][...
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def avg(list): """Find average value in a list or list-like object""" return sum(list) / len(list)
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from typing import Tuple def nested(s: bytes, start: int) -> Tuple[bytes, int]: """ Return everything between start and a matching closing parenthesis :param s: :param start: :return: """ depth = 1 # Because the function match eats the opening parenthesis i = start in_quo...
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import json def get_id_list_from_file(filename): """reads id list from json file""" with open(filename,'r') as file: id_list = json.load(file) return id_list
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import json import os def get_config_dict(config_fp, all_vars, this_file_dir): """ Description: We use the 'json' library to get the config loaded as a python dict. Also, we add the variables 'R_path', 'FEBA_dir' and 'this_dir' to all_vars. The config file is 'barseqr_config_d...
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def distance(x, y): """ Calculate the euclidean distance between two point in three dimensional space. """ return ((x[0] - y[0]) ** 2 + (x[1] - y[1]) ** 2 + (x[2] - y[2]) ** 2) ** 0.5
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def d_y_diffr_dy(x, y): """ derivative of d(y/r)/dy equivalent to second order derivatives dr_dyy :param x: :param y: :return: """ return x**2 / (x**2 + y**2)**(3/2.)
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import time def timeAndDateStr(): """ A pretty current time and date timestring. Looks like 12:34 2015/01/01""" ttime = time.gmtime() timestring = "%02.0d:%02.0d %02.0d/%02.0d/%02.0d" \ "" % (ttime[3],ttime[4],ttime[0],ttime[1],ttime[2]) return(timestring)
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def run(dfs: dict, settings: dict) -> dict: """Drop df from dfs""" if 'dfs' not in settings: raise Exception('Missing dfs param') for df in settings['dfs']: if df not in dfs: raise Exception('Invalid dfs param') dfs.pop(df) return dfs
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def _make_property(property, doc, return_typedoc, return_type): """Create a getter method with associated docstring. Parameters ---------- property : `str` Name of the property getter to be created. doc : `str` Description of this property. return_typedoc : `str` Type st...
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