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def intersect(a, b): """ Return the intersection of two lists. Args: a (list): A list. b (list): Another list. Returns (list): The intersection of the two lists. """ # NOTE: Binary operator '&' is built in and returns the intersection of 2 sets. ret...
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def bgr_to_rgb(bgr): """Converts Blue, Green, Red to Red, Green, Blue.""" return bgr[..., [2, 1, 0]]
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import sys def is_py_39(): """check if current python version is 3.9""" return sys.version_info.major == 3 and sys.version_info.minor == 9
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def torchcrop(x, start_idx, crop_sz): """ Arguments --------- x : Tensor to be cropped Either of dim 2 or of 3 start_idx: tuple/list Start indices to crop from in each axis crop_sz: tuple/list Crop size Returns ------- cropped tensor """ dim = len(x.s...
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import tempfile def get_tmpdir(): """ Return the name of the directory used for temporary files, always without trailing '/'. Searches a standard list of directories to find one which the calling user can create files in. The list is: * The directory named by the TMPDIR environment variable. ...
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def column_sort_key(column): """ util for sort columns. """ if column.endswith('_id'): return '0' + column if column.endswith('_masks'): return '1' + column return column
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import json async def send_files(route, files, payload, http): """Sends files""" form = [] form.append({'name': 'payload_json', 'value': json.dumps(payload, separators=(',', ':'), ensure_ascii=True)}) if len(files) == 1: file = files[0] form.append({ 'name': 'file', ...
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def get_next_issue(issues, issue): """ A lista de números é ordenada pelos números mais recentes para o mais antigos, portanto para retornarmos os números mais novos, devemos caminhar pelo índice do valor maior para o menor, isso justifica no preview subtrai 1 ao índice. param: issues é a lista...
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import platform def _OS_check(): """ """ if platform.system() == 'Darwin': return True else: return False
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def cbool(value): """ """ return 1 if value else 0
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def round_int(x, *, ndim=0): """ 先四舍五入,再取整 :param x: 一个数值,或者多维数组 :param ndim: x是数值是默认0,否则指定数组维度,批量处理 比如ndim=1是一维数组 ndim=2是二维数组 >>> round_int(1.5) 2 >>> round_int(1.4) 1 >>> round_int([2.3, 1.42], ndim=1) [2, 1] >>> round_int([[2.3, 1.42], [3.6]], ndim=2) [[2...
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def get_river_config(fileName, noisy=False): """ Parse the rivers namelist to extract the parameters and their values. Returns a dict of the parameters with the associated values for all the rivers defined in the namelist. Parameters ---------- fileName : str Full path to an FVCOM R...
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def update_namespace(tuple_to_update, **updates): """ Returns a new namespace with the same properties as the input, but updated with the given kwargs. Args: tuple_to_update (Union([types.namedtuple, typing.NamedTuple])): The tuple object **updates: Properties to update on the tuple ...
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def get_roi_coordinates(coordinates, rect): """ Translate the general coordinates to the ROI rect """ return map(lambda c: [coordinates[c] - rect[0], coordinates[c + 1] - rect[1]], range(0, len(coordinates), 2))
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def _mock_key(service, method): """Key to address a mock object in MockableTransport.""" return '%s::%s' % (service, method)
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from typing import Union from typing import List def list_over(obj: Union[list, str], n: int) -> List[str]: """ Return a list of strings of length greater than n in obj, or sublists of obj, if obj is a list. If obj is a string of length greater than n, return a list containing obj. Otherwise retu...
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def prune(d): """If possible, make the multi-valued mapping `d` single-valued. If all value sets of `d` have exactly one member, remove the set layer, and return the single-valued dictionary. Else return `d` as-is. """ if all(len(v) == 1 for v in d.values()): return {k: next(iter(v)) f...
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import re def read_source_file(file_path, regex): """Finds all fluent keys from the supplied source file.""" keys = [] with open(file_path, 'r') as file: for line in file.readlines(): if line.find("fl!") != -1: finds = re.findall(regex, line) if finds: ...
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def fn_check_missing_data(df): """check for any missing data in the df (display in descending order)""" return df.isnull().sum().sort_values(ascending=False)
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def rotate_square_counter(block, count): """ Return a square block after rotating counterclockwise 90° count times """ for _ in range(count): block = [[block[j][i] for j in range(len(block))] for i in list(reversed(range(len(block))))] block = [''.join(i) for i in block] return block
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def recognize(audio, service): """ Uses the IBM Speech to Text service to translate the audio file to text. :rtype: dict with the transcript and confidence for the the most likely alternative for the translated text. """ dic = service.recognize( audio=audio, model='es-AR_NarrowbandMo...
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def Finish_to_c(self): """Syntax conversion for breaking a loop.""" return f"goto break_{self.targetID};"
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import argparse def p_val_type(arg): """ Checks if p_val is a float within the range {0, 1}. """ try: p_val = float(arg) except ValueError: msg = f"P-value '{arg}' is not a floating point number." raise argparse.ArgumentTypeError(msg) if not (0 < p_val < 1): ...
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def parsePersonName(value): """ """ if not value:return None return value.lower()
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def key_by_id(mapping): """ Converts arrays to hashes keyed by the id attribute for easier lookup. So [{'id': 'one', 'foo': 'bar'}, {'id': 'two', 'foo': 'baz'}] becomes {'one': {'id': 'one', 'foo': 'bar'}, 'two': {'id': 'two', 'foo': 'baz'}} """ if isinstance(mapping, list) and isins...
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def _match_tags(repex_tags, path_tags): """Check for matching tags between what the user provided and the tags set in the config. If `any` is chosen, match. If no tags are chosen and none are configured, match. If the user provided tags match any of the configured tags, match. """ if 'any' ...
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def parse_csv_data(csv_filename): """ This function takes a csv file and returns the data in a list :param csv_filename: the name of the csv file to be read :return: the data in a list format """ csv_data = [] f = open(csv_filename, 'r') for line in f.readlines(): splits = [] ...
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import torch def fused_add_tanh_sigmoid_multiply(input_a, input_b, n_channels): """ A sequence of combined transformations for speed improvement :param input_a: of shape (*, 2 * n_channels, L) :param input_b: of shape (*, 2 * n_channels, L) :param n_channels: IntTensor containing a single item (in...
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import string def isalphanum(word): """ This function returns true if a word contains letters or digits :param word: A string token to check :return: True if the word contains letters or digits """ for char in word: if char not in string.ascii_letters and char not in string.digits: ...
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def factor_of_all_upto(num, limit): """ Returns True if num is divisible by all numbers in the range of integers in 1 up to and including limit. # Speed up by skipping 1. Any integer is divisible by 1! # If the number ends in 1, 3, 7, or 9, it's more likely to be prime. # Check back...
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def read_fp(filename, dtype=int): """ read fingerprint from file Args: filename: <type 'str'> Return: chembl_id_list: <type 'list'>, a list of str fps_list: <type 'list'>, a list of dict. """ chembl_id_list = [] fps_list = [] infile = open(filename, "r") line_num = 0 for line in infile: ...
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def get_input_dtypes(data): """Returns input get_input_dtypes.""" return ('float32','float32')
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def stmt_from_rule(rule_name, model, stmts): """Return the source INDRA Statement corresponding to a rule in a model. Parameters ---------- rule_name : str The name of a rule in the given PySB model. model : pysb.core.Model A PySB model which contains the given rule. stmts : lis...
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def reverse_dict(d): """ Функция меняет местами ключи и значения в словаре с сохранением всех ключей, которые указывали на одно и то же значение Пример: {a: 1, b: 2, c: 1} -> {1: [a, c], 2: [b]} """ dinv = {} for k, v in d.items(): if v in dinv: dinv[v].append(k) ...
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import string import random def get_alphanumeric_string(str_length, **kwargs): """Get random alpha numeric string, default is lowercase ascii chars Available kwargs (in order of precedence*): uppercase_only = default is False mixed_case = default is False digits_only = default is Fals...
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import mpmath def mode(p, b, loc=0, scale=1): """ Mode of the generalized inverse Gaussian distribution. The mode is: p - 1 + sqrt((p - 1)**2 + b**2) loc + scale ------------------------------- b """ p = mpmath.mpf(p) b = mpmath.m...
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def whilst(b, x): """ Like using a takewhile in comprehensions. It aborts the remainder of the iterable. But unlike a StopIteration, the remaining other loops continue. >>> from itertools import takewhile >>> [(x,y) for x in takewhile(lambda x:x<3,range(10)) ... for y in takewhile(lambda y...
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def wrap_type_blink(return_type, type_registry): """Returns True if the type is a blink type that requires wrap_jso but NOT unwrap_jso""" return (return_type == 'Map' or return_type == 'Rectangle')
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import torch def kl_divergence_mc( q_distrib: torch.distributions.Distribution, p_distrib: torch.distributions.Distribution, z: torch.Tensor ): """Elementwise Monte-Carlo estimation of KL between two distributions KL(q||p) (no reduction applied). Any number of dimensions works via broadcasting and correc...
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def _get_test_type(item): """ Gets the test type - unit, functional, integration, based on the directory that the test is in. """ return item.nodeid.split('/')[1]
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def to_camel(m): """Convert to camel case.""" return m.group(1).Upper()
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def _dummy_get_parameter(tree_info, extra_config): """ Dummy function used to return parameters (TreeEnsemble converters already have parameters in the right format) """ return tree_info
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def bubble_sort(a: list): """Optimized Bubble sort that return sorted list with O(n^2) complexity""" a, n = a.copy(), len(a) for _ in range(n): is_swap = False for i in range(1, n): if a[i-1] > a[i]: is_swap = True a[i-1], a[i] = a[i], a[i-1] ...
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def calc_bfdp(bf, prior): """ Calculate BFDP for a single gene per Wakefield, AJHG, 2007 """ # Wakefield phrases prior as probability of no effect, so we need to invert prior = 1 - prior po = prior / (1 - prior) bftpo = bf * po bfdp = bftpo / (1 + bftpo) return bfdp
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import time def parseDateCol(df, date_col): """ takes the date column and adds new columns with the features: yr, mon, day, day of week, day of year """ df['datetime'] = df.apply(lambda x : time.strptime(str(x[date_col]), "%Y%M%d"), axis = 1) print('parsing year') df['year'] = df.apply(lambda x : x['datetime']...
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def fnsplit(fn): """/path/fnr.x -> (/path/fnr, x) when possible. Non-str treated as None.""" if not (isinstance(fn, str) and fn): return (None, None) fn = fn.strip() if not fn: return (None, None) x = fn.rfind('.') if x == -1: return fn, None return (fn[:x], fn[x:])
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def pluralize(s, count): #=============================================================================== """ Return word with 's' appended if the count > 1. """ if count > 1: return '%ss' % s return s
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import os def isxml(path): """Is the given file an xml file?""" (filename, ext) = os.path.splitext(path) if ext.lower() in ['.xml']: return True else: return False
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def isfile_s3(bucket, key: str) -> bool: """Returns T/F whether the file exists.""" objs = list(bucket.objects.filter(Prefix=key)) return len(objs) == 1 and objs[0].key == key
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def _get_attribute_dict(clazz, excluded=set()): """ Return dictionary of non-static members and their values for an instance of class Args: clazz ([type]): object instance of a certain class excluded (set): names of member attributes which are excluded from dictionary}). Defaults to set(). ...
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import re def find_doi(input): """ checks if the doi of an article is syntactically correct or empty :param input: doi of an article :return: correct doi if found, otherwise None """ if input is None: return None regex = r"(\d\d\.\d+\/\S+)" regex = re.compile(regex) m = reg...
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def filepaths(filesets): """ Return a list of filepaths from list of FileSets """ filepaths = [] for fs in filesets: filepaths += fs.files return filepaths
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def agent_slot(occupants, a_id, t): """Return the slot agent with id a_id occupied in round t, or -1 if a_id wasn't present in round t""" agents = occupants[t] if a_id in agents: return agents.index(a_id) else: return -1
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import os def getFileListOnPath(path: str, filterExtension="") -> list: """Returns list of files in path""" fileList = [] # Get list of all files for item in os.listdir(path): if os.path.isfile(os.path.join(path, item)): if item.endswith(filterExtension): fileList...
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def __ensure_suffix(t, suffix): """ Ensure that the target t has the given suffix. """ tpath = str(t) if not tpath.endswith(suffix): return tpath+suffix return t
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def is_clockwise(ring_to_test): """ A clockwise ring means it is an outer ring; counter-clockwise means the opposite. For determining the direction of a ring, we need to calculate the sum of the areas under each side. A positive sum indicates a clockwise polygon. See here for more info: http://stack...
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import logging def get_hypervisor_for_guest(nova_client, guest_name): """Return the name of the hypervisor hosting a guest. :param nova_client: Authenticated nova client :type nova_client: novaclient.v2.client.Client :param vm_name: Name of guest to loohup :type vm_name: str """ logging.i...
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def workflow_basedir(workflow_id: str) -> str: """Get base directory containing associated files for the workflow with the given identifier. Parameters ---------- workflow_id: string Unique workflow identifier Returns ------- string """ return workflow_id
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import torch def weight_convolution(conv_weights:torch.Tensor, in_channels:int, out_channels:int, scaling_factor:int, kernel_size:int = 3, padding:int = 1): """ Weight Convolution - coded for clarity, not speed kernel_size:int - the size of the convolution kernel, K ... the deconvolution kernel size = r ...
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def _numlines(s): """Returns the number of lines in s, including ending empty lines.""" # We use splitlines because it is Unicode-friendly and thus Python 3 # compatible. However, it does not count empty lines at the end, so trick # it by adding a character at the end. return len((s + 'x').splitline...
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import unicodedata def normalize(text): """Resolve different type of unicode encodings / capitarization in HotpotQA data.""" text = unicodedata.normalize('NFD', text) return text[0].capitalize() + text[1:]
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import requests def get_drip_resources(URL='https://beta-gc2.datadistillery.org/api/v1/sql/bcb?q=select * from drip.dripdams'): """Export of known dam removals from data distillery Parameters ---------- URL : str Built query for GC2. """ try: r = requests.get(URL) if r...
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def fcntl(fd, op, arg=0): """Perform the requested operation on file descriptor *fd* (file objects providing a :meth:`fileno` method are accepted as well). The operation is defined by *op* and is operating system dependent. These codes are also found in the :mod:`fcntl` module. The argument *a...
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def feature_results(correlation, chi2, rfe, boruta): """ Return a list which has passed for three testes correlation = set of result from corrrelation teste chi2 = set of features which has passed from chi2 teste rfe = set of features which has passed from rfe teste boruta = set of features whic...
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def get_second_offset(time): """ Get second offset from time. @time: Python time object in 24 hour format. """ return time.hour * 3600 + time.minute * 60 + time.second
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def tan(x): """ [Definition] x的正切函数 [Category] 三角函数 Notes:np.nan seems not to check domain of definition! """ return 'tan(%s)' %x
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import uuid def new_iid(): """Called by the websetup to get a unique uuid for the application iid.""" return uuid.uuid4().hex
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def num(s): """ convert a string to integer or float :param s: a string of number :return: an int or float type number """ try: return int(s) except ValueError: return float(s) else: raise ValueError('Expected integer or floating point number.')
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def skip_these_vars(): """ Returns a list of variables that should not be read by GCPy. These are mostly from the MAPL v1.0.0 cubed-sphere files, which introduce extra dimensions that are not easily handled by xarray and/or GCPy. Example: ------- >>> from gcpy import core >>> import...
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def normalize_typename(typename: str) -> str: """ Drop the namespace from a type name and converts to lower case. e.g. 'tows:parks' -> 'parks' """ normalized = typename if ":" in typename: normalized = typename.split(":")[1] return normalized.lower()
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def xyzw2wxyz(xyzw): """Convert quaternions from XYZW format to WXYZ.""" x, y, z, w = xyzw return w, x, y, z
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def all_subsets(lst): """Metoda na vsechny podmnoziny""" #vlozime si na zacatku prazdnou mnozinu set = [[]] #Iterujeme kazdy prvek z listu for x in lst: #iterace vsech podmnozin for y in set: # pridani nove podmnoziny skladajici se z podmnoziny a prvku listu s...
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def check_related_lot_status(tender, award): """Check if related lot not in status cancelled""" lot_id = award.get('lotID') if lot_id: if [l['status'] for l in tender.get('lots', []) if l['id'] == lot_id][0] != 'active': return False return True
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def decode_rle(input): """ Gets a stream of data and decompresses it under a Run-Length Decoding. :param input: The data to be decoded. :return: The decoded string. """ decode_str = "" count = "" for ch in input: # If not numerical if not ch.isdigit(): # ...
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def load_parameters(simpa, growth_speed: float): """ Add all parameters to one dictionary """ simParameters = simpa.simParameters simParameters['growth_rate_one'] = growth_speed/(60*simpa.dL_dimer) #rate of one dimer per s return simParameters
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def check_analysis_type(options): """Determines what type of analysis to do based on the command line options.""" if options['cterm_models']: analysis_type = 'cterminus' else: analysis_type = 'nterminus' return analysis_type
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import itertools def flatten(list_of_lists): """Flatten one level of nesting.""" return itertools.chain.from_iterable(list_of_lists)
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import six def get_model_label(model): """ Take a model class or model label and return its model label. >>> get_model_label(MyModel) "myapp.MyModel" >>> get_model_label("myapp.MyModel") "myapp.MyModel" """ if isinstance(model, six.string_types): return model else: ...
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import os def schema_path(schema): """ Get a filesystem path for the named database schema Args: schema: Name of the database schema. Returns: A filesystem path pointing at a ".sql" file. """ dir_path = os.path.dirname(__file__) schemaPath = os.path.join(dir_path, "schema", s...
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def fst(ls): """returns the 0th element of a list""" return ls[0]
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import os def search_path(): """Get the search directory.""" curr_path = os.path.dirname(os.path.abspath(os.path.expanduser(__file__))) ver_path = [os.path.join(curr_path, '../../../verilog/')] ver_path += [os.path.join(curr_path, '../../../tests/verilog/unittest/')] ver_path += [os.path.join(curr...
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def ready(): """Return a JSON object that identifies if the service is setupAnd ready to work.""" return {'message': 'api is ready'}, 200
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import os def check_path(path): """Check path. Args: path: path. Return: real path Raise: if path is valid or not read and write permissions. """ if os.path.exists(path): real_path = os.path.realpath(path) if not os.path.isdir(real_path): raise ValueError("path:%s is not di...
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import os import subprocess def extract_tar_gz(file, output_dir="./models"): """ Extract a .tar.gz Parameters ---------- output_dir (default="./models"): Where to extract the .tar.gz Returns ------ output_dir: full path to the output directory where files where extracted ...
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def get_camera_from_topic(topic): """ Returns the camera name given the image topic. """ topic_split = topic.split('/') return topic_split[2]
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def is_implosive(sound): """ This groups stops and affricates into a group of sounds. """ return sound.manner in {"implosive"}
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from pathlib import Path import json def read_parameters(parameters_file: Path): """This function reads the config file containing the parameters needed for filtering datasets.""" if parameters_file.exists(): with open(parameters_file) as fout: parameters = json.load(fout) else: ...
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def extract_sentences(nodes, token_node_indices): """ given a list of ``SaltNode``\s, returns a list of lists, where each list contains the indices of the nodes belonging to that sentence. """ sents = [] tokens = [] for i, node in enumerate(nodes): if i in token_node_indices: ...
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def extract_parts(usage): """Extract individual components from a usage string""" opp = {'{': '}', '[': ']', '(': ')'} cur_word = [] tokens = [] stack = [] for c in usage: if c.isspace() and not stack: if cur_word: tokens.append(''.join(cur_word)) ...
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def fix_on_create_nodes(node): """ Helper function to create the correct cypher string for querying and merging a new node to the graph. This is used when no node is matched and a new one has to be created. Input: - node: dic, dictionary of a node generated from some create_neo4j_ ...
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def array_chunk(array, size): """ Given an array and chunk size, divide the array into many subarrays, where each subarray is of length size. array_chunk([1,2,3,4], 2) --> [[1,2], [3,4]] array_chunk([1,2,3,4,5], 2) --> [[1,2], [3,4], [5]] """ counter = 0 outer_list = [] inner_lis...
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def reim(b): """ function to split into 2 arrays real part and imaginary part of complex array """ return ([z.real for z in b],[z.imag for z in b])
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def time_minutes(dt): """Format a datetime as time only with precision to minutes.""" return dt.strftime('%H:%M')
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import re def offset(text): """Returns index of first non-whitespace character. Args: text (str): string to be analyzed for whitespaces. Returns: index (int): index of first non-whitespace character; -1 if none found. """ index = 0 # Assume first character is not a whitespace ...
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import itertools def save_v2_timecodes_to_file(filepath, timecodes): """ :param filepath: path to file for saving :param timecodes: list of timecodes of each frame in format [timecode_of_0_frame_in_ms, timecode_of_1_frame_in_ms, ... timecode_of_i_frame_in_ms] :return: file object (closed) ...
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def WithChanges(resource, changes): """Apply ConfigChangers to resource. It's undefined whether the input resource is modified. Args: resource: KubernetesObject, probably a Service. changes: List of ConfigChangers. Returns: Changed resource. """ for config_change in changes: resource = co...
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def dummy_equals(dummy1, dummy2): """ Yet another dummy function. Parameters ---------- dummy1 : int The first dummy parameter. dummy2 : int The second dummy parameter. Returns ------- bool True if dummy1 equals dummy2, False otherwise. """ return d...
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import torch def make_grid(grid_size, grid_offset, grid_res): """ Constructs an array representing the corners of an orthographic grid """ depth, width = grid_size xoff, yoff, zoff = grid_offset xcoords = torch.arange(0., width, grid_res) + xoff zcoords = torch.arange(0., depth, grid_res...
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import binascii def encode(bs): """Given a bytes object, return a Base64-encoded version of that object, without newlines.""" return binascii.b2a_base64(bs, newline=False).decode("utf-8").rstrip()
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import re def is_tns_name(name: str): """ Checks if a string adheres to the TNS naming scheme """ return re.match("^AT|SN(19|20)\d\d[a-z]{3,4}$", name)
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