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import re def isuuid5(value): """ Return whether or not given value is a UUID version 5. If the value is a UUID version 5, this function returns ``True``, otherwise ``False``. Examples:: >>> isuuid5('987FBC97-4BED-5078-AF07-9141BA07C9F3') True >>> isuuid5('9c858901-8a57-4791...
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def get_batchid_from_job(job_ads_dict): """ Get batchID string from condor job dict """ batchid = '{0}.{1}'.format(job_ads_dict['ClusterId'], job_ads_dict['ProcId']) return batchid
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import random def random_name() -> str: """Generate a random account name.""" return "temp" + str(random.randint(100000, 999999))
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def calcul_jxy(ne, k): """Calculer j,x,y les attributs individus de la variable k""" y = (k - 1) % ne x = ((k-1-y) // ne) % ne j = (k - 1 - y - x*ne) // (ne**2) return j, x, y
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def sort_by_tc(events): """Sorts events by their rec_start_tc.""" events.sort(key=lambda e: (e.rec_start_tc.frames, e.track)) return events
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import numpy def log2RelativeMassLimit(relativeMassLimit): """Converts a relative mass limit to a corresponding value, which can be used as an absolute limit for log2 transformed mass values. :param relativeMassLimit: float, for example the commonly used value 10ppm (10*1e-6) :returns: numpy...
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def _create_ha_id(name, channel, param, count): """Generate a unique entity id.""" # HMDevice is a simple device if count == 1 and param is None: return name # Has multiple elements/channels if count > 1 and param is None: return "{} {}".format(name, channel) # With multiple pa...
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from pathlib import Path def get_immediate_directories(directory_path): """Gets the immediate sub-directories within a directory Args: directory_path (str): path to the directory Returns: list(str): list of sub-directories """ p = Path(directory_path) return [f for f in p.ite...
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def all_equal(s): """Return whether all elements in a list are equal.""" return len(set(s)) <= 1
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def write_updates_to_tas(tensor_arrays, t, tensor_updates): """Write updates to corresponding TensorArrays at time step t.""" assert len(tensor_arrays) == len(tensor_updates) num_updates = len(tensor_updates) return [tensor_arrays[i].write(t, tensor_updates[i]) for i in range(num_updates)]
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def get_node_ids(apic, args): """ Get the list of node ids from the command line arguments. If none, get all of the node ids :param apic: Session instance logged in to the APIC :param args: Command line arguments :return: List of strings containing node ids """ if args.switch is not None...
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def _html_tag(tag, contents, attr_string=''): """Wraps 'contents' in an HTML element with an open and closed 'tag', applying the 'attr_string' attributes. """ return '<' + tag + attr_string + '>' + contents + '</' + tag + '>'
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import pathlib def tmp_cache(config, tmpdir): """Move the cache to a temporary dir that is empty at the start of the test and deleted after the test.""" config['CACHE_ROOT_DIR'] = pathlib.Path(tmpdir) return config['CACHE_ROOT_DIR']
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def formatParamStr(s,generalLine,length=64): """ modify so that len(last_line) = length (default=72) Add the general line pointer at the end of each line """ # check the remainder and append with spaces as required, divide into elements s = s.split(',') retStr = '' newLine = '' ...
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import codecs def read_metafile(path): """ Read contents from given metafile """ with codecs.open(path, 'rb', 'utf-8') as f: return f.read()
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def getSubmissionTextAsSingleString(content): """ Get all submission titles as a single string """ items = reversed(content) text = '' for item in items: #print (item.link_flair_text) if item.is_self is not True: #print (str(item.author) + ' ' + item.permali...
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def read_content_from_file(filename): """Simply reads content from a file. Used so we don't have to mock __builtin__.open() Args: filename (string): name of the file """ with open(filename, 'r') as fh: content = fh.read() return content
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import torch def collate_fn(data): """ Creates mini-batch from x, ivec, jvec tensors We should build custom collate_fn, as the ivec, and jvec have varying lengths. These should be appended in row form Args: data: list of tuples contianing (x, ivec, jvec) Returns: x: one hot enco...
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from bs4 import BeautifulSoup def extract_body_from_html(html_soup): """Return an XML beautiful soup object with the <body> of the input HTML file""" body = html_soup.body.extract() xml_soup = BeautifulSoup('', 'xml') xml_soup.append(body) return xml_soup
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def zero_mean(im): """ ZeroMean called with the 'both' argument, as from Binghamton toolbox. Parameters ---------- im : numpy.ndarray Multidimensional array. Returns ------- numpy.ndarray Zero mean version of input im. """ if im.ndim == 2: im.shape += (...
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import yaml import json def load_config_file(config_file: str, child_name="dockerConfiguration") -> dict: """ Load OSDF configuration from a file -- currently only yaml/json are supported :param config_file: path to config file (.yaml or .json). :param child_name: if present, return only that child n...
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def make_frame(contents, title=''): """ Wrap `contents` in \begin{frame} ... \end{frame}, optionally setting `title` """ lines = [r'\begin{frame}'] if title != '': lines.append(f'\\frametitle{{{title}}}') lines += [ f'{contents}', r'\end{frame}' ] return '\n'....
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def calculate_dot_product(vectEndX, vectEndZ, pointCoordX, pointCoordZ): """ Looks if the linePosition is above or below user defined point for isolating drop. vectEndX = list - total x range (in pixels) of droplet vectEndZ = list - z-coordinate (in pixels) of user input for isolating droplet ...
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def gini_impurity_score_by_period(right_dict, left_dict, verbose=False): """ Calculate the gini impurity score by period given two dictionaries that charactize the left and right leaf after the potential split. """ current_score = [] for key in right_dict.keys(): left_proba = left_dict[...
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def add_cluster_labels(model, ct, train_df, test_df, target): """Adds cluster labels as a feature""" train_df_cluster = train_df.copy() test_df_cluster = test_df.copy() X_cluster = ct.fit_transform(train_df.drop(columns=[target])) test_cluster = ct.transform(test_df) model.fit(X_cluster) ...
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def get_pull_request(pull_request_number=None, repo=None): """ get pull request from given identifier :param pull_request_number: :param repo: :return: """ if not pull_request_number: raise ValueError("you must provide pull request number") if not repo: raise ValueError(...
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def mol_with_atom_index(mol): """Use this method to add RDKit's atom index (order) to the visualized graph""" for atom in mol.GetAtoms(): atom.SetAtomMapNum(atom.GetIdx()) return mol
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def separate_words_and_numbers(strings): """ Separates words and numbers into two lists. :param strings: List of strings. :return: One list of words and one list of numbers """ filtered_words = [] filtered_numbers = [] for string in strings: if string.isdigit(): ...
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def intersection(lst1, lst2): """returns the intersection between two lists""" if (lst1 == None or lst2 == None): return [] lst3 = [value for value in lst1 if value in lst2] return lst3
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import torch def _format_faces_indices(faces_indices, max_index): """ Format indices and check for invalid values. Indices can refer to values in one of the face properties: vertices, textures or normals. See comments of the load_obj function for more details. Args: faces_indices: List of...
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import argparse def _get_parser(): """ Command line Parser for search :return: """ parser = argparse.ArgumentParser(description='Tool for fetching photos from facebook') parser.add_argument('-fb', '--facebook', action='store_true', help='Fetch Facebook Photos (Default)'...
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import logging def logger() -> logging.Logger: """Create logger fixture.""" return logging.getLogger("test")
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def sum_pair(numbers, sum_to): """ Naive approach with double for loop over unsorted numbers array Complexity: O(n2) """ for n1 in numbers: for n2 in numbers: if n1 + n2 == sum_to: return True return False
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import os def confirm_overwrite(filepath): """ If config.get('output', 'overwrite')==False and the file exists, ask user if it should be overwritten. """ if os.path.isfile(filepath): overwrite = input("[WARNING] {} already exists - ".format(filepath) + "overwrite...
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def get_coherence_pairs(): """ These are pairs that should be placed next to each other """ return [(u"(", u")"), (u"[", u"]"), (u"{", u"}"), (u"<", u">"), (u"“", u"”"), (u"‘", u"’"), (u"«", u"»"), (u"‹", u"›")]
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def remove_redefined_attributes(path): """ Removing any redefined 'viewBox' or 'd' attributes path: path of file being corrected """ file_content = "" file = open(path, 'r') file = file.read() d_attribute_found = False view_box_attribute_found = False end_tag_fo...
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def get_division_data(): """Get league division names""" divisions = [ {'name': 'AFC East'}, {'name': 'AFC North'}, {'name': 'AFC South'}, {'name': 'AFC West'}, {'name': 'NFC East'}, {'name': 'NFC North'}, {'name': 'NFC South'}, {'name': 'NFC West'...
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import os def get_export_dir(out_dir): """Returns directory of exported best model""" return os.path.join(out_dir, 'export')
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def wrap_function(function, args): """Count the number of times a function is called and close around `args`. This function existed in scipy prior to 1.7 It must not have been considered part of the public API, as it has disappeared without a trace. """ ncalls = [0] if function is None: ...
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import unicodedata def _preprocess_ja(sentence: str) -> str: """Copied from https://github.com/rwth-i6/ExtendedEditDistance/blob/master/util.py. Raises: ValueError: If input sentence is not of a type `str`. """ if not isinstance(sentence, str): raise ValueError(f"Only strings allowed ...
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import os import glob def find_image_subfolder(current_root): """Identifies the right level of a directory that matches with torchvision.datasets.ImageFolder requirements. In particular, if images are in current_root/foo/bar/category_X/*.jpg we will want to feed current_root/foo/bar/ to ImageFolder. ...
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def _pairs(exercises): """ Returns a list of pairs of exercises in `excercises` """ pair_list = [] for i in range(len(exercises)//2): pair_list.append((exercises[2 * i], exercises[2 * i + 1])) return pair_list
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def _unique_metric_name(name, existing_metrics): """Returns a unique name given the existing metric names.""" existing_names = set([metric.name for metric in existing_metrics]) proposed_name = name cnt = 1 # Start incrementing with 1. # Increment name suffix until the name is unique. while proposed_name i...
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import torch def euclidean_distance_mean_loss(data, centroids): """ Calculate euclidean distance mean loss between data and centroids (also similar to kmean_loss()) # Arguments data: input data (torch tensor) single_value: a single value, usually the min value (torch tensor) # Return ...
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def V(x): """ potential energy function use units such that m = 1 and omega_0 = 1 """ return 0.5 * pow(x, 2.0)
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def dms_to_deg(deg,min,sec): """Convert a (deg,arcmin,arcsec) to decimal degrees""" return deg+min/60.+sec/3600.
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def count_ways(n): """ Parameters ---------- n : Dimension of chessboard (n x n) Returns ---------- The number of ways to place n queens on the chessboard, such that no pair of queens attack each other """ def backtrack(i, c, l, r): if not i: ...
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import logging def isTie(df): """ Determine if the kmers count value is a tie with the second top isolate; if so then indicate a tie was found in the results Parameters ---------- df : pandas data frame Returns ---------- str string of best genus either genus or a sentenc...
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def construct_network_config_string(cfg_list): """ Creates the network configuration string from a list of addresses created via convert_network_address_to_list Args: cfg_list (List): List of lists containing all the addresses Returns: cfg_string (str): String containing the numbers of...
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def add(x, y): """ Helper function to implement adding for binary nums """ cur_sum = 0 carry_in = 0 temp_x = x temp_y = y k = 1 while temp_x or temp_y: xk = x & k yk = y & k carry_out = (xk & yk) | (xk & carry_in) | (yk & carry_in) cur_sum |= (xk ...
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def from_pandas_contextual(df): """ Convert contextual ``pandas.DataFrame`` to list of tuples. Args: df (DataFrame): anomalies, passed as ``pandas.DataFrame`` containing two columns: start and stop. Returns: list: tuple (start, end) timestamp. Raise...
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from datetime import datetime def format_str_date(str_date): """ 将全球每日疫情数据中的字符串转为时间 :return: """ return datetime.strptime(str_date, '%Y %m.%d').date().__str__()
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import math def get_dist(x1,x2,y1,y2): """Find distance between two points""" return abs(math.sqrt(pow(x1-x2,2) + pow(y1-y2,2)))
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def get_X_Y(**cosmo): """The fraction of baryonic mass in hydrogen and helium. Assumes X_H + Y_He = 1. You must specify either 'X_H', or 'Y_He', or both. """ if 'X_H' in cosmo and 'Y_He' not in cosmo: X_H = cosmo['X_H'] Y_He = 1. - X_H elif 'Y_He' in cosmo and 'X_H' not in cosm...
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from typing import List def do_materials_match( materials_1: List[str], materials_2: List[str], colors_1: List[str], colors_2: List[str] ) -> bool: """Returns whether the two given material lists match, or, if either of the given material lists are empty, returns whether the two given color li...
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def separate_appetizers(dishes, appetizers): """ :param dishes: list of dish names :param appetizers: list of appetizer names :return: list of dish names The function should return the list of dish names with appetizer names removed. Either list could contain duplicates and may require de-dupin...
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def compute_loss(batch, output, loss_func): """Computes the loss of a given batch Args: batch (dict): The current batch output (tuple): Tuple of tensors (output of `TransformerModel`) loss_func (:obj:`nn.modules._Loss`): The loss function Returns: (:obj:`torch.Tensor`, int)...
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def memo(f): """Simple memoize""" key = "__zpretty_memo__" + f.__name__ def wrapped(obj): if not hasattr(obj, key): setattr(obj, key, f(obj)) return getattr(obj, key) return wrapped
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from typing import List import itertools def flatten_(list_of_lists: List[List]) -> List: """Reduce a lists of lists to a list, functionally >>> assert flatten_([[1, 2], [3, 4]]) == [1, 2, 3, 4] Thanks to CTT at https://stackoverflow.com/a/716482/500942 """ return list(itertools.chain.fr...
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def clean_data(df): """ Clean the dataset Args: df: (pandas.DatFrame) containing data to be cleaned Returns: df: (pandas.DataFrame) containing the cleaned dataset """ try: # clean target labels categories = df.categories.str.split(";", expand=True) cat_n...
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import torch def redistribute_errors(power_deltaE_hyab, cmax, pc, pt): """ Redistributes exponentiated HyAB errors to the [0,1] range :param power_deltaE_hyab: float tensor (with Nx1xHxW layout) containing the exponentiated HyAb distance :param cmax: float containing the exponentiated, maximum HyAB difference be...
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def error_handler(func): """Makes a function in a cog an error handler""" func._is_error_handler = True return func
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import socket import os def compute_environ(): """Figure out things about our current host.""" env = {} # get hostname env["hostname"] = socket.gethostname() # Get system memory in GB env["memGB"] = ( os.sysconf('SC_PAGE_SIZE') * os.sysconf('SC_PHYS_PAGES') / (1024**3) ) env["T...
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def decode_fit_par(fit_par, constraint_types): """ Translate the 1D array of fit parameters to individual lists. The fit paramters are sorted into the lists segment_borders, y_at_borders slope_at_borders based on the strings given in constraint_types. The three lists are used as arguments in piecew...
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import pickle def load_transform_data_fn(data_file, **kwargs): """ Load and preprocess data, returning the examples and labels as numpy. """ # Try loading saved preprocessed data and classifier. with open(data_file, "rb") as f: obj = pickle.load(f) X, y = obj["X"], obj["y"] re...
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import itertools def get_room_locations(room_top_left, room_width, room_height): """ Returns the locations within a room, excluding walls. This is a helper function for adding objects to a room. It returns a list of all (x,y) coordinates that fall within the room excluding the walls. Parameters ...
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import random def random_fill_sparse(table,K): """ brief : fills in a matrix randomly args : matrix : empty matrix K : number of cells to be filled in Return : the matrix (numpy array) filled in with "X" values (char) Raises : K must be smaller than...
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import re def _build_es_query(params): """Builds the body of the ES search query and return it as a dict. Args: params: the parameters from a web query. Should at least contain a terms and a fields parameter. Returns: search_body: a dict conating the body for an ES search...
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def validate_file_transfer(filename, file_transfer_status): """Validate file transfer. Keyword arguments: filename -- name of file being copied file_transfer_status -- true (success) or false (failed) :param filename: str :param file_transfer_status: bool """ if not file_transfer_statu...
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def find_column(input_text: str, token_lexpos: int) -> int: """ Used for compute column in case of error. """ line_start = input_text.rfind('\n', 0, token_lexpos) + 1 return (token_lexpos - line_start) + 1
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def calcular_longitud_cadena(cadena): """ Calcula la longitud de una cadena de caracteres. """ contador = 0 for c in cadena: contador += 1 return contador
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def process_text(response): """Returns the plaintext of the reponse.""" return response.text
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def updateHand(hand, word): """ Assumes that 'hand' has all the letters in word. In other words, this assumes that however many times a letter appears in 'word', 'hand' has at least as many of that letter in it. Updates the hand: uses up the letters in the given word and returns the new ha...
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def _next_rooted_tree(predecessor, p=None): """One iteration of the Beyer-Hedetniemi algorithm.""" if p is None: p = len(predecessor) - 1 while predecessor[p] == 1: p -= 1 if p == 0: return None q = p - 1 while predecessor[q] != predecessor[p] - 1: q -= ...
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def get_list_by_selected_names(set_names, set_list): """ @summary 通过集群名称(列表)获取集群{bk_set_id, bk_set_name}对象列表 @param set_names: aa,bb or ['aa', 'bb'] @param set_list: [{"bk_set_id":1, "bk_set_name":"bb"}] @return: [{"bk_set_id":1, "bk_set_name":"bb"}] """ set_name_list = set_names if not ...
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def input_new_values(formed_text, sample_list): """ formed_text: formatted text with {} sample_list: list of new user values formats text with user values :@return(String) Re-formatted version of """ return formed_text.format(*sample_list)
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import torch def invlogit(x, a=torch.tensor(0.0), b=torch.tensor(1.0)): """ sigmoid """ u = torch.sigmoid(x) return (b - a) * u + a
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def make_colorscale(scl0='rgb(255, 6, 6)', scl20='rgb(255, 153, 51)', scl40='rgb(255, 255, 51)', scl60='rgb(128, 255, 0)', scl80='rgb(0, 102, 0)'): """Generates a discrete color scale for the map graphic. @param scl0 - color string for the minimum value @param scl20 -...
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import os def getfilename(val): """ Returns "item" from /home/adys/Item.dbc """ return os.path.splitext(os.path.basename(val))[0].lower()
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import torch def square_norm(x): """ Helper function returning square of the euclidean norm. Also here we clamp it since it really likes to die to zero. """ norm = torch.norm(x, dim=-1, p=2) ** 2 return torch.clamp(norm, min=1e-5)
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def dt_tstamp(dt_obj): """ Args: dt_obj (dt.datetime): datetime.datetime object Returns: int: timestamp """ return int(dt_obj.strftime('%s'))
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def sum_unmarked(board): """ Sum of the unmarked pieces on the board :param board: :return: """ counter = 0 for row in board: for pair in row: number, marked = pair if not marked: counter += number return counter
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def other_bond_index(bond, index): """Return the atom index for the other atom in a bond.""" if bond[0] == index: return bond[1] elif bond[1] == index: return bond[0] else: raise ValueError("Index %s not found in bond %s" % (index, bond))
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def validate_package_name(name): """ Check if the given name is compliant to Keypirinha's package naming rules and return a boolean. **CAUTION:** this function should just serve an informational purpose as it may not be up-to-date with current Keypirinha release. """ ascii_alnum = "01234567...
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def pretty_print_time(time, message=None): """Pretty print the given time""" days = time.days hours, remainder = divmod(time.seconds, 3600) minutes, seconds = divmod(remainder, 60) if message is not None: print(message) print(f'\t {days} days, {hours} hours, {minutes} minutes, {secon...
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import re def is_fc_uid(uid): """Validate the FC initiator format.""" return re.match(r"(\w{2}:){15}\w{2}", uid, re.I) is not None
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import base64 def base64_to_str(b64): """ >>> base64_to_str("TMOhc3psw7M=") 'László' """ return base64.b64decode(b64.encode()).decode()
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import numpy import os import pandas def calculateuncertainty(numberofsensor,numberofmodelinstance,finalpathuncertaintyinput,finalpathprediction): """ Calculate geotechnical uncertainties for the subsequent EDMF analysis Developed by : WANG Ze-Zhou (ETH Singapore) Contact : e0054...
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import re def doctor(string: str) -> str: """Get rid of all the wacky newlines nbconvert adds to markdown output and return result.""" post_code_newlines_patt = re.compile(r'(```)(\n+)') inter_output_newlines_patt = re.compile(r'(\s{4}\S+)(\n+)(\s{4})') post_code_filtered = re.sub(post_code_newlines_...
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import string def get_valid_chars(): """Get valid characters. Valid characters are the ones which are on the following list: -_()[] abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ0123456789 Return: string """ return "-_()[] %s%s" % (string.ascii_letters, string.digits)
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def _make_url_args(url_args: dict): """ Make url parameters Args: url_args (Dict): Dict of url parametes Returns: str: The url parameters Example: input: {'test1': 1, 'test2': 2, 'test3': 3} output: "&test1=1&test2=2&test3=3" """ url = '' for key, v...
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def singleton(cls, *args, **kwargs): """构造一个单例的装饰器""" instance = {} def __singleton(*args, **kwargs): if cls not in instance: instance[cls] = cls(*args, **kwargs) return instance[cls] return __singleton
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def package_time(date_dict): """Package a time/date statement in a standardised form.""" return {"time_value": date_dict}
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def saffir_simpson_scale(spd): """Static method that returns the equivalent saffir-simpson scale rating, based on wind-speed in knots. This is the most-common index used to generalize tropical cyclone intensity. Example: saffir_simpson(100) --> 3 (implying category 3). """ if 34 <= spd < 6...
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def validate_container_command(output: str, name: str) -> tuple: """ Validates output from one of the *_container functions, eg start_container. :param output: output from the command line :param name: container name or ID :return: success boolean, message """ if "no such container" in outpu...
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def fill_list_to_len(slist, lgoal, tobefilled=""): """ fill a list with something to a given length """ for i in range(lgoal - len(slist)): slist.append(tobefilled) return slist
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from typing import Dict from typing import Any from typing import Tuple from typing import List def get_category_counts(cookie_data: Dict[str, Dict[str, Any]]) -> Dict[Tuple[str,str], List[int]]: """ Retrieve category counts for each cookie, to then be able to compute the majority opinion. Cookies are ide...
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import argparse def get_args(): """Argument parser. Returns: Dictionary of arguments. """ parser = argparse.ArgumentParser(description='Chainer MNIST Example') parser.add_argument( '--batch-size', type=int, default=100, metavar='N', help='input batch size for training (defa...
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def standardize_tabletype(tabletype): """ Given the user defined type of table it returns the proper 'tabletype' expected by the pipeline Args: tabletype, str. Allows for a flexible number of input options, but should refer to either the 'exposure', 'processing', or 'unproc...
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def reorder_list_or_array(M, ordering): """ Reorders a list or array like object. """ if isinstance(M, list): return [M[i] for i in ordering] else: return M[ordering]
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