| { |
| "cohort": { |
| "n_genomes": 1200, |
| "n_defense_subtypes": 236, |
| "n_lineage_clusters": 184, |
| "median_cluster_size": 2.0, |
| "mean_chromosomal_systems": 12.339166666666667, |
| "sd_chromosomal_systems": 4.997579344598298, |
| "crispr_columns_found": [ |
| "CAS_Class1-Subtype-I-C", |
| "CAS_Class1-Subtype-I-E", |
| "CAS_Class1-Subtype-I-F", |
| "CAS_Class1-Type-I", |
| "Rst_HelicaseDUF2290" |
| ], |
| "frac_genomes_with_crispr": 0.5358333333333334, |
| "n_exposure_covariates": 21 |
| }, |
| "testA_all_defense_load": { |
| "partial_r2": 0.06686762998031304, |
| "null_mean_r2": 0.022745599413750803, |
| "partial_r2_excess": 0.044122030566562234, |
| "pvalue": 0.0004997501249375312, |
| "n": 1200, |
| "n_covariates_used": 21 |
| }, |
| "testA_crispr_only": { |
| "partial_r2": 0.059025287159522044, |
| "null_mean_r2": 0.02420408368577469, |
| "partial_r2_excess": 0.034821203473747356, |
| "pvalue": 0.0004997501249375312, |
| "n": 1200, |
| "n_covariates_used": 21 |
| }, |
| "testB_load_vs_extrachrom_len": { |
| "spearman": 0.15346876727421646, |
| "pvalue": 9.169772191035603e-08, |
| "n": 1200 |
| }, |
| "testB_load_vs_extrachrom_systems": { |
| "spearman": 0.08176611321456927, |
| "pvalue": 0.004593249117499305, |
| "n": 1200 |
| }, |
| "testB_crispr_vs_extrachrom_len": { |
| "spearman": -0.08849996099142415, |
| "pvalue": 0.002150958655249886, |
| "n": 1200 |
| }, |
| "per_system": { |
| "n_tested": 116, |
| "n_significant_p05_uncorrected": 73, |
| "n_expected_by_chance_p05": 5.800000000000001, |
| "n_significant_BH_q10": 79, |
| "frac_significant_BH_q10": 0.6810344827586207, |
| "median_partial_r2": 0.049194222796417164, |
| "max_partial_r2": 0.3668275957603121, |
| "worst_systems": [ |
| { |
| "system": "BREX_II", |
| "partial_r2": 0.3668275957603121, |
| "pvalue": 0.0024937655860349127, |
| "pvalue_bh": 0.0072319201995012464 |
| }, |
| { |
| "system": "Rst_3HP", |
| "partial_r2": 0.32120304394733223, |
| "pvalue": 0.0024937655860349127, |
| "pvalue_bh": 0.0072319201995012464 |
| }, |
| { |
| "system": "DS-38", |
| "partial_r2": 0.3204451806382036, |
| "pvalue": 0.0024937655860349127, |
| "pvalue_bh": 0.0072319201995012464 |
| }, |
| { |
| "system": "pAgo_S2B", |
| "partial_r2": 0.2157603084681764, |
| "pvalue": 0.0024937655860349127, |
| "pvalue_bh": 0.0072319201995012464 |
| }, |
| { |
| "system": "BstA", |
| "partial_r2": 0.17701550672550082, |
| "pvalue": 0.0024937655860349127, |
| "pvalue_bh": 0.0072319201995012464 |
| }, |
| { |
| "system": "RnlAB", |
| "partial_r2": 0.15109916332945839, |
| "pvalue": 0.004987531172069825, |
| "pvalue_bh": 0.012309651403406376 |
| } |
| ] |
| } |
| } |