well4cell 1.0.0-rc1: index,stats,provenance,summary,manifest
Browse files- data/summary/double_knockout/part-00000.parquet +2 -2
- data/summary/dynamic_media/part-00000.parquet +2 -2
- data/summary/regulation/part-00000.parquet +2 -2
- data/summary/single_knockout/part-00000.parquet +2 -2
- data/summary/wildtype_media/part-00000.parquet +2 -2
- index.parquet +2 -2
- manifest.json +1 -1
- provenance/export_qc.parquet +2 -2
- stats/double_knockout.parquet +2 -2
- stats/dynamic_media.parquet +2 -2
- stats/regulation.parquet +2 -2
- stats/single_knockout.parquet +2 -2
data/summary/double_knockout/part-00000.parquet
CHANGED
|
@@ -1,3 +1,3 @@
|
|
| 1 |
version https://git-lfs.github.com/spec/v1
|
| 2 |
-
oid sha256:
|
| 3 |
-
size
|
|
|
|
| 1 |
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:15ccd57e16680c8a34dbb8c1e39469116ac06ea9da64f3761398ce31ffe9905b
|
| 3 |
+
size 3965433
|
data/summary/dynamic_media/part-00000.parquet
CHANGED
|
@@ -1,3 +1,3 @@
|
|
| 1 |
version https://git-lfs.github.com/spec/v1
|
| 2 |
-
oid sha256:
|
| 3 |
-
size
|
|
|
|
| 1 |
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:b6e4c70c5ae365d04a82b2c97514ff1cdf34276c71f1767667f5aae50c084051
|
| 3 |
+
size 6218467
|
data/summary/regulation/part-00000.parquet
CHANGED
|
@@ -1,3 +1,3 @@
|
|
| 1 |
version https://git-lfs.github.com/spec/v1
|
| 2 |
-
oid sha256:
|
| 3 |
-
size
|
|
|
|
| 1 |
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:6067c321bd900aa47c26904738cd763744870b9a8cb5ba40af07af2c86217f55
|
| 3 |
+
size 736033
|
data/summary/single_knockout/part-00000.parquet
CHANGED
|
@@ -1,3 +1,3 @@
|
|
| 1 |
version https://git-lfs.github.com/spec/v1
|
| 2 |
-
oid sha256:
|
| 3 |
-
size
|
|
|
|
| 1 |
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:b12be4c8e91ab66864f0dc365c4be3b580ebd7f4d0bea6040ff5629c776759dc
|
| 3 |
+
size 23862117
|
data/summary/wildtype_media/part-00000.parquet
CHANGED
|
@@ -1,3 +1,3 @@
|
|
| 1 |
version https://git-lfs.github.com/spec/v1
|
| 2 |
-
oid sha256:
|
| 3 |
-
size
|
|
|
|
| 1 |
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:3725a5d3bdd762c709df229af33445ddcb307d1e98502ce2259cbd889fc9e060
|
| 3 |
+
size 242563
|
index.parquet
CHANGED
|
@@ -1,3 +1,3 @@
|
|
| 1 |
version https://git-lfs.github.com/spec/v1
|
| 2 |
-
oid sha256:
|
| 3 |
-
size
|
|
|
|
| 1 |
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:1040c41cc523e9740dbd37643720d6f154e1d22852cf52e888a9be482bf4ba16
|
| 3 |
+
size 4690387
|
manifest.json
CHANGED
|
@@ -1 +1 @@
|
|
| 1 |
-
{"active_columns": {"exchange_flux_matrix": {"active": 82, "columns": 87}, "mrna_counts_matrix": {"active": 2773, "columns": 3133}, "protein_counts_matrix": {"active": 4174, "columns": 4310}, "reaction_flux_matrix": {"active": 3974, "columns": 9612}}, "built_at": "2026-10-
|
|
|
|
| 1 |
+
{"active_columns": {"exchange_flux_matrix": {"active": 82, "columns": 87}, "mrna_counts_matrix": {"active": 2773, "columns": 3133}, "protein_counts_matrix": {"active": 4174, "columns": 4310}, "reaction_flux_matrix": {"active": 3974, "columns": 9612}}, "built_at": "2026-10-21T02:31:02+00:00", "configs": {"core": {"bytes": 18594865271, "families": {"double_knockout": {"bytes": 1863842291, "files": 1, "rows": 31390535, "trajectories": 11951}, "dynamic_media": {"bytes": 2774609830, "files": 2, "rows": 47151419, "trajectories": 18599}, "regulation": {"bytes": 323918365, "files": 1, "rows": 5501785, "trajectories": 2046}, "single_knockout": {"bytes": 13529451993, "files": 7, "rows": 230981330, "trajectories": 83937}, "wildtype_media": {"bytes": 103042792, "files": 1, "rows": 1726776, "trajectories": 641}}, "files": 12, "rows": 316751845, "stride": 1, "trajectories": 117174}, "expression": {"bytes": 82689886494, "families": {"double_knockout": {"bytes": 8834921380, "files": 5, "rows": 3154907, "trajectories": 11951}, "dynamic_media": {"bytes": 11714776392, "files": 7, "rows": 4739949, "trajectories": 18599}, "regulation": {"bytes": 1689737741, "files": 1, "rows": 552844, "trajectories": 2046}, "single_knockout": {"bytes": 59938007205, "files": 35, "rows": 23209171, "trajectories": 83937}, "wildtype_media": {"bytes": 512443776, "files": 1, "rows": 173523, "trajectories": 641}}, "files": 49, "rows": 31830394, "stride": 10, "trajectories": 117174}, "metabolism": {"bytes": 90290988719, "families": {"double_knockout": {"bytes": 9122907254, "files": 5, "rows": 3154907, "trajectories": 11951}, "dynamic_media": {"bytes": 13506859556, "files": 7, "rows": 4739949, "trajectories": 18599}, "regulation": {"bytes": 1601554846, "files": 1, "rows": 552844, "trajectories": 2046}, "single_knockout": {"bytes": 65557375917, "files": 34, "rows": 23209171, "trajectories": 83937}, "wildtype_media": {"bytes": 502291146, "files": 1, "rows": 173523, "trajectories": 641}}, "files": 48, "rows": 31830394, "stride": 10, "trajectories": 117174}, "summary": {"bytes": 35024613, "families": {"double_knockout": {"bytes": 3965433, "files": 1, "pathway_columns": 13, "rows": 11951, "trajectories": 11951}, "dynamic_media": {"bytes": 6218467, "files": 1, "pathway_columns": 13, "rows": 18599, "trajectories": 18599}, "regulation": {"bytes": 736033, "files": 1, "pathway_columns": 13, "rows": 2046, "trajectories": 2046}, "single_knockout": {"bytes": 23862117, "files": 1, "pathway_columns": 13, "rows": 83937, "trajectories": 83937}, "wildtype_media": {"bytes": 242563, "files": 1, "pathway_columns": 13, "rows": 641, "trajectories": 641}}, "files": 5, "rows": 117174, "stride": 1, "trajectories": 117174}}, "deg_rates": {"5558948af4ad806f21d7c80c": {"kb_sha256": "8ff93a58576f484edfd6fea641eeeb4fc554b52b97da49f4d8b275ca74496667", "mrna_units": {"ceiling": 7, "determined": 2293, "floor": 246, "imputed": 587, "total": 3133}, "not_a_fit_pct_basal_mrna_expression": 12.216}, "fa6a9ebd4b1c988a36ef9fa1": {"kb_sha256": "b1750cf04409c37ebce9d4d3009daeae0779dd66508812c2807744d83baf1ab7", "mrna_units": {"ceiling": 7, "determined": 2293, "floor": 246, "imputed": 587, "total": 3133}, "not_a_fit_pct_basal_mrna_expression": 12.216}}, "failed_jobs": {"failed_jobs": 971, "with_generations": 920}, "families": {"double_knockout": {"cells": 375, "lineages": 3000, "trajectories": 11951}, "dynamic_media": {"cells": 684, "lineages": 5472, "trajectories": 18599}, "regulation": {"cells": 64, "lineages": 512, "trajectories": 2046}, "single_knockout": {"cells": 2752, "lineages": 21949, "trajectories": 83937}, "wildtype_media": {"cells": 21, "lineages": 168, "trajectories": 641}}, "git_commit": "f3bdabc004a473964df62712469213bffde7ab90", "git_dirty": false, "held_back": [], "kb_sha256": {"5558948af4ad806f21d7c80c": "8ff93a58576f484edfd6fea641eeeb4fc554b52b97da49f4d8b275ca74496667", "fa6a9ebd4b1c988a36ef9fa1": "b1750cf04409c37ebce9d4d3009daeae0779dd66508812c2807744d83baf1ab7"}, "qc": {"attempts": 351522, "failed": 0}, "termination_class": {"equilibrium_unstable": 6, "fba_infeasible": 3, "negative_counts": 2647, "none": 112545, "time_limit": 1973}, "trajectories": 117174, "translation_collapse": {"divided": 4188, "families": {"double_knockout": {"divided": 158, "trajectories": 201}, "dynamic_media": {"divided": 1027, "trajectories": 1602}, "regulation": {"divided": 0, "trajectories": 0}, "single_knockout": {"divided": 3003, "trajectories": 4470}, "wildtype_media": {"divided": 0, "trajectories": 0}}, "threshold_aa_per_s": 1.0, "trajectories": 6273}, "version": "1.0.0-rc1"}
|
provenance/export_qc.parquet
CHANGED
|
@@ -1,3 +1,3 @@
|
|
| 1 |
version https://git-lfs.github.com/spec/v1
|
| 2 |
-
oid sha256:
|
| 3 |
-
size
|
|
|
|
| 1 |
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:ce4c372a1466f145ebd3074cdda216c003dc0b7749faf6dc1d0f8f39e4ec4157
|
| 3 |
+
size 580870
|
stats/double_knockout.parquet
CHANGED
|
@@ -1,3 +1,3 @@
|
|
| 1 |
version https://git-lfs.github.com/spec/v1
|
| 2 |
-
oid sha256:
|
| 3 |
-
size
|
|
|
|
| 1 |
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:8c43ad3d71e793164a103cfe4a1ed6ce1170e6e73bc3ebad9c79705f9ed58257
|
| 3 |
+
size 334806
|
stats/dynamic_media.parquet
CHANGED
|
@@ -1,3 +1,3 @@
|
|
| 1 |
version https://git-lfs.github.com/spec/v1
|
| 2 |
-
oid sha256:
|
| 3 |
-
size
|
|
|
|
| 1 |
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:fff6ce0a440e304772f633ce2bc14120a970334fcbc0229911cf4e9a11bef07e
|
| 3 |
+
size 342786
|
stats/regulation.parquet
CHANGED
|
@@ -1,3 +1,3 @@
|
|
| 1 |
version https://git-lfs.github.com/spec/v1
|
| 2 |
-
oid sha256:
|
| 3 |
-
size
|
|
|
|
| 1 |
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:10edbf4816929ec53adad04711c277612745277538eba27702d6c89f2aeeb0ca
|
| 3 |
+
size 324877
|
stats/single_knockout.parquet
CHANGED
|
@@ -1,3 +1,3 @@
|
|
| 1 |
version https://git-lfs.github.com/spec/v1
|
| 2 |
-
oid sha256:
|
| 3 |
-
size
|
|
|
|
| 1 |
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:b31a878620db352b9dadbb8a498cb68e17f60dd57318e344f818eec12b225100
|
| 3 |
+
size 353824
|