Datasets:
celinelee
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python_fn_calls

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status.get("id")
status.get("status")
status.get("start_ts")
slicer.util.infoDisplay(msg, detailedText=json.dumps(status, indent=2)
logging.info(msg)
logging.info("Time consumed by training: {0:3.1f}".format(time.time()
onStopTraining(self)
time.time()
qt.QApplication.setOverrideCursor(qt.Qt.WaitCursor)
self.updateServerSettings()
self.logic.train_stop()
slicer.util.errorDisplay("Failed to stop Training Task", detailedText=traceback.format_exc()
qt.QApplication.restoreOverrideCursor()
status.get("status")
status.get("start_ts")
status.get("end_ts")
status.get("result", status.get("details", [])
slicer.util.infoDisplay(msg, detailedText=json.dumps(status, indent=2)
logging.info(msg)
self.updateGUIFromParameterNode()
logging.info("Time consumed by stop training: {0:3.1f}".format(time.time()
isTrainingRunning(self, check_only=True)
self.updateServerSettings()
self.logic.train_status(check_only)
onNextSampleButton(self)
len(slicer.util.getNodesByClass("vtkMRMLScalarVolumeNode")
self.onClearScribbles()
slicer.mrmlScene.Clear(0)
time.time()
qt.QApplication.setOverrideCursor(qt.Qt.WaitCursor)
self.updateServerSettings()
slicer.util.errorDisplay("No Strategy Found/Selected\t")
self.logic.next_sample(strategy, self.getParamsFromConfig("activelearning", strategy)
logging.debug(sample)
sample.get("id")
self.samples.get(sample["id"])
self.ui.inputSelector.findText(name)
self.ui.inputSelector.setCurrentIndex(index)
logging.info(sample)
sample.get("path")
sample.get("name", image_id)
sample.get("PatientID", sample.get("name", image_id)
sample.get("checksum")
os.path.exists(image_file)
logging.info(f"Check if file exists/shared locally: {image_file} => {local_exists}")
slicer.util.loadVolume(image_file)
self._volumeNode.SetName(node_name)
self.serverUrl()
quote_plus(image_id)
logging.info(download_uri)
SampleData.SampleDataLogic()
self.initSample(sample)
traceback.format_exc()
qt.QApplication.restoreOverrideCursor()
self.updateGUIFromParameterNode()
logging.info("Time consumed by next_sample: {0:3.1f}".format(time.time()
initSample(self, sample, autosegment=True)
self._volumeNode.GetName()
self._volumeNodes.append(self._volumeNode)
self.createSegmentNode()
slicer.modules.segmenteditor.widgetRepresentation()
self()
segmentEditorWidget.setSegmentationNode(self._segmentNode)
segmentEditorWidget.setMasterVolumeNode(self._volumeNode)
slicer.util.settingsValue("MONAILabel/allowOverlappingSegments", False, converter=slicer.util.toBool)
slicer.util.getNodesByClass("vtkMRMLSegmentEditorNode")
SetOverwriteMode(2)
self.info.get("labels")
self.updateSegmentationMask(None, self.info.get("labels")
self.info.get("labels", [])
self.models.items()
model.get("labels", [])
qt.QApplication.restoreOverrideCursor()
self.onClickSegmentation()
getPermissionForImageDataUpload(self)
format(self.serverUrl()
onUploadImage(self, init_sample=True, session=False)
slicer.mrmlScene.GetFirstNodeByClass("vtkMRMLScalarVolumeNode")
volumeNode.GetName()
self.getPermissionForImageDataUpload()
qt.QApplication.setOverrideCursor(qt.Qt.WaitCursor)
tempfile.NamedTemporaryFile(suffix=self.file_ext, dir=self.tmpdir)
self.reportProgress(5)
time.time()
slicer.util.saveNode(volumeNode, in_file)
logging.info("Saved Input Node into {0} in {1:3.1f}s".format(in_file, time.time()
self.reportProgress(30)
self.logic.create_session(in_file)
self.logic.upload_image(in_file, image_id)
self.reportProgress(100)
self.initSample({"id": image_id}, autosegment=False)
qt.QApplication.restoreOverrideCursor()
self.updateGUIFromParameterNode()
self.reportProgress(100)
qt.QApplication.restoreOverrideCursor()
version (> 0.2.0)
traceback.format_exc()
slicer.util.errorDisplay("Failed to upload volume to Server", detailedText=traceback.format_exc()
onImportLabel(self)
os.path.exists(self.ui.labelPathLineEdit.currentPath)