code stringlengths 3 6.57k |
|---|
slicer.util.warningDisplay("Label File not selected") |
qt.QApplication.setOverrideCursor(qt.Qt.WaitCursor) |
self.updateSegmentationMask(self.ui.labelPathLineEdit.currentPath, self.info["labels"]) |
qt.QApplication.restoreOverrideCursor() |
qt.QApplication.restoreOverrideCursor() |
slicer.util.errorDisplay("Failed to import label", detailedText=traceback.format_exc() |
onSaveLabel(self) |
time.time() |
self.onClearScribbles() |
self.current_sample.get("session") |
self.onUploadImage(init_sample=False) |
qt.QApplication.setOverrideCursor(qt.Qt.WaitCursor) |
slicer.mrmlScene.AddNewNodeByClass("vtkMRMLLabelMapVolumeNode") |
slicer.modules.segmentations.logic() |
segmentationNode.GetSegmentation() |
segmentation.GetNumberOfSegments() |
segmentation.GetNthSegmentID(i) |
range(totalSegments) |
enumerate(segmentIds) |
segmentation.GetSegment(segmentId) |
segment.GetName() |
logging.info(f"Removing segment {segmentId}: {segment.GetName() |
segmentationNode.RemoveSegment(segmentId) |
label_info.append({"name": segment.GetName() |
label_info.append({"color": segment.GetColor() |
tempfile.NamedTemporaryFile(suffix=self.file_ext, dir=self.tmpdir) |
self.reportProgress(5) |
slicer.util.settingsValue("MONAILabel/allowOverlappingSegments", True, converter=slicer.util.toBool) |
slicer.util.settingsValue("MONAILabel/fileExtension", self.file_ext) |
slicer.util.saveNode(segmentationNode, label_in) |
slicer.util.saveNode(labelmapVolumeNode, label_in) |
self.reportProgress(30) |
self.updateServerSettings() |
self.logic.save_label(self.current_sample["id"], label_in, {"label_info": label_info}) |
self.fetchInfo() |
slicer.util.settingsValue("MONAILabel/autoUpdateModel", True, converter=slicer.util.toBool) |
self.isTrainingRunning(check_only=True) |
self.logic.train_stop() |
logging.info("Failed to stop training; or already stopped") |
self.onTraining() |
slicer.util.errorDisplay("Failed to save Label to MONAI Label Server", detailedText=traceback.format_exc() |
qt.QApplication.restoreOverrideCursor() |
self.reportProgress(100) |
slicer.mrmlScene.RemoveNode(labelmapVolumeNode) |
json.dumps(result, indent=2) |
slicer.util.settingsValue("MONAILabel/autoFetchNextSample", False, converter=slicer.util.toBool) |
slicer.mrmlScene.Clear(0) |
self.onNextSampleButton() |
logging.info("Time consumed by save label: {0:3.1f}".format(time.time() |
getSessionId(self) |
self.current_sample.get("session", False) |
self.current_sample.get("session_id") |
self.logic.get_session(session_id) |
self.onUploadImage(init_sample=False, session=True) |
onClickSegmentation(self) |
time.time() |
qt.QApplication.setOverrideCursor(qt.Qt.WaitCursor) |
self.updateServerSettings() |
self.getParamsFromConfig("infer", model) |
self.logic.infer(model, image_file, params, session_id=self.getSessionId() |
print(f"Result Params for Segmentation: {params}") |
params.get("label_names") |
params.get("label_names") |
get("labels") |
isinstance(labels, dict) |
sorted(labels.items() |
self.updateSegmentationMask(result_file, labels) |
traceback.format_exc() |
qt.QApplication.restoreOverrideCursor() |
os.path.exists(result_file) |
os.unlink(result_file) |
self.updateGUIFromParameterNode() |
logging.info("Time consumed by segmentation: {0:3.1f}".format(time.time() |
onUpdateDeepgrow(self) |
self.onClickDeepgrow(None) |
onClickDeepgrow(self, current_point, skip_infer=False) |
slicer.util.warningDisplay("Please select a deepgrow model") |
self.currentSegment() |
slicer.util.warningDisplay("Please add the required label to run deepgrow") |
self.getFiducialPointsXYZ(self.dgPositiveFiducialNode, "foreground") |
self.getFiducialPointsXYZ(self.dgNegativeFiducialNode, "background") |
segment.SetTag("MONAILabel.ForegroundPoints", json.dumps(foreground_all) |
segment.SetTag("MONAILabel.BackgroundPoints", json.dumps(background_all) |
get("dimension", 3) |
time.time() |
segment.GetName() |
format(label, model, deepgrow_3d) |
logging.debug(operationDescription) |
slicer.util.warningDisplay(operationDescription + " - points not added") |
qt.QApplication.setOverrideCursor(qt.Qt.WaitCursor) |
self._segmentNode.GetSegmentation() |
self.info.get("labels", []) |
segmentation.GetSegmentIdBySegmentName(name) |
segmentation.GetSegment(segmentId) |
vtk.mutable("") |
segment.GetTag("MONAILabel.ForegroundPoints", fPosStr) |
str(fPosStr) |
print("{} => {} Fiducial points are: {}".format(segmentId, name, pointset) |
len(pointset) |
json.loads(pointset) |
Subsets and Splits
No community queries yet
The top public SQL queries from the community will appear here once available.