schema stringclasses 471
values | key stringlengths 0 203 | description stringlengths 0 4.37k | object stringlengths 2 322k |
|---|---|---|---|
meta.schema.json | minimum_value | for slots with ranges of type number, the value must be equal to or higher than this | {"type": "integer"} |
meta.schema.json | modified_by | agent that modified the element | {"type": "string"} |
meta.schema.json | narrow_mappings | A list of terms from different schemas or terminology systems that have narrower meaning. | {"items": {"type": "string"}, "type": "array"} |
meta.schema.json | none_of | holds if none of the expressions hold | {"items": {}, "type": "array"} |
meta.schema.json | notes | editorial notes about an element intended primarily for internal consumption | {"items": {"type": "string"}, "type": "array"} |
meta.schema.json | pattern | the string value of the slot must conform to this regular expression expressed in the string | {"type": "string"} |
meta.schema.json | range | defines the type of the object of the slot. Given the following slot definition
S1:
domain: C1
range: C2
the declaration
X:
S1: Y
implicitly asserts Y is an instance of C2
| {"type": "string"} |
meta.schema.json | range_expression | A range that is described as a boolean expression combining existing ranges | {} |
meta.schema.json | rank | the relative order in which the element occurs, lower values are given precedence | {"type": "integer"} |
meta.schema.json | recommended | true means that the slot should be present in instances of the class definition, but this is not required | {"type": "boolean"} |
meta.schema.json | related_mappings | A list of terms from different schemas or terminology systems that have related meaning. | {"items": {"type": "string"}, "type": "array"} |
meta.schema.json | required | true means that the slot must be present in instances of the class definition | {"type": "boolean"} |
meta.schema.json | see_also | A list of related entities or URLs that may be of relevance | {"items": {"type": "string"}, "type": "array"} |
meta.schema.json | source | A related resource from which the element is derived. | {"type": "string"} |
meta.schema.json | status | status of the element | {"type": "string"} |
meta.schema.json | structured_aliases | A list of structured_alias objects, used to provide aliases in conjunction with additional metadata. | {"items": {}, "type": "array"} |
meta.schema.json | structured_pattern | the string value of the slot must conform to the regular expression in the pattern expression | {} |
meta.schema.json | title | A concise human-readable display label for the element. The title should mirror the name, and should use ordinary textual punctuation. | {"type": "string"} |
meta.schema.json | todos | Outstanding issues that needs resolution | {"items": {"type": "string"}, "type": "array"} |
meta.schema.json | unit | an encoding of a unit | {} |
meta.schema.json | value_presence | if true then a value must be present (for lists there must be at least one value). If false then a value must be absent (for lists, must be empty) | {} |
meta.schema.json | AnonymousTypeExpression | A type expression that is not a top-level named type definition. Used for nesting. | {"additionalProperties": false, "properties": {"all_of": {"items": {}, "type": "array"}, "any_of": {"items": {}, "type": "array"}, "equals_number": {"type": "integer"}, "equals_string": {"type": "string"}, "equals_string_in": {"items": {"type": "string"}, "type": "array"}, "exactly_one_of": {"items": {}, "type": "array"}, "implicit_prefix": {"type": "string"}, "maximum_value": {"type": "integer"}, "minimum_value": {"type": "integer"}, "none_of": {"items": {}, "type": "array"}, "pattern": {"type": "string"}, "structured_pattern": {}, "unit": {}}, "type": "object"} |
meta.schema.json | all_of | holds if all of the expressions hold | {"items": {}, "type": "array"} |
meta.schema.json | any_of | holds if at least one of the expressions hold | {"items": {}, "type": "array"} |
meta.schema.json | equals_number | the slot must have range of a number and the value of the slot must equal the specified value | {"type": "integer"} |
meta.schema.json | equals_string | the slot must have range string and the value of the slot must equal the specified value | {"type": "string"} |
meta.schema.json | equals_string_in | the slot must have range string and the value of the slot must equal one of the specified values | {"items": {"type": "string"}, "type": "array"} |
meta.schema.json | exactly_one_of | holds if only one of the expressions hold | {"items": {}, "type": "array"} |
meta.schema.json | implicit_prefix | Causes the slot value to be interpreted as a uriorcurie after prefixing with this string | {"type": "string"} |
meta.schema.json | maximum_value | for slots with ranges of type number, the value must be equal to or lowe than this | {"type": "integer"} |
meta.schema.json | minimum_value | for slots with ranges of type number, the value must be equal to or higher than this | {"type": "integer"} |
meta.schema.json | none_of | holds if none of the expressions hold | {"items": {}, "type": "array"} |
meta.schema.json | pattern | the string value of the slot must conform to this regular expression expressed in the string | {"type": "string"} |
meta.schema.json | structured_pattern | the string value of the slot must conform to the regular expression in the pattern expression | {} |
meta.schema.json | unit | an encoding of a unit | {} |
meta.schema.json | Anything | {"additionalProperties": true, "type": "object"} | |
meta.schema.json | ClassDefinition | an element whose instances are complex objects that may have slot-value assignments | {"additionalProperties": false, "properties": {"abstract": {"type": "boolean"}, "aliases": {"items": {"type": "string"}, "type": "array"}, "all_of": {"items": {}, "type": "array"}, "alt_descriptions": {"additionalProperties": {"anyOf": [{}, {"type": "string"}]}, "type": "object"}, "annotations": {"additionalProperties": {}, "type": "object"}, "any_of": {"items": {}, "type": "array"}, "apply_to": {"items": {"type": "string"}, "type": "array"}, "attributes": {"additionalProperties": {"anyOf": [{}, {"type": "null"}]}, "type": "object"}, "broad_mappings": {"items": {"type": "string"}, "type": "array"}, "categories": {"items": {"type": "string"}, "type": "array"}, "children_are_mutually_disjoint": {"type": "boolean"}, "class_uri": {"type": "string"}, "classification_rules": {"items": {}, "type": "array"}, "close_mappings": {"items": {"type": "string"}, "type": "array"}, "comments": {"items": {"type": "string"}, "type": "array"}, "conforms_to": {"type": "string"}, "contributors": {"items": {"type": "string"}, "type": "array"}, "created_by": {"type": "string"}, "created_on": {"format": "date-time", "type": "string"}, "defining_slots": {"items": {"type": "string"}, "type": "array"}, "definition_uri": {"type": "string"}, "deprecated": {"type": "string"}, "deprecated_element_has_exact_replacement": {"type": "string"}, "deprecated_element_has_possible_replacement": {"type": "string"}, "disjoint_with": {"items": {"type": "string"}, "type": "array"}, "exact_mappings": {"items": {"type": "string"}, "type": "array"}, "exactly_one_of": {"items": {}, "type": "array"}, "examples": {"items": {}, "type": "array"}, "extensions": {"additionalProperties": {}, "type": "object"}, "from_schema": {"type": "string"}, "id_prefixes": {"items": {"type": "string"}, "type": "array"}, "implements": {"items": {"type": "string"}, "type": "array"}, "imported_from": {"type": "string"}, "in_language": {"type": "string"}, "in_subset": {"items": {"type": "string"}, "type": "array"}, "instantiates": {"items": {"type": "string"}, "type": "array"}, "is_a": {"type": "string"}, "keywords": {"items": {"type": "string"}, "type": "array"}, "last_updated_on": {"format": "date-time", "type": "string"}, "local_names": {"additionalProperties": {"anyOf": [{}, {"type": "string"}]}, "type": "object"}, "mappings": {"items": {"type": "string"}, "type": "array"}, "mixin": {"type": "boolean"}, "mixins": {"items": {"type": "string"}, "type": "array"}, "modified_by": {"type": "string"}, "name": {"type": "string"}, "narrow_mappings": {"items": {"type": "string"}, "type": "array"}, "none_of": {"items": {}, "type": "array"}, "notes": {"items": {"type": "string"}, "type": "array"}, "rank": {"type": "integer"}, "related_mappings": {"items": {"type": "string"}, "type": "array"}, "represents_relationship": {"type": "boolean"}, "rules": {"items": {}, "type": "array"}, "see_also": {"items": {"type": "string"}, "type": "array"}, "slot_conditions": {"additionalProperties": {"anyOf": [{}, {"type": "null"}]}, "type": "object"}, "slot_names_unique": {"type": "boolean"}, "slot_usage": {"additionalProperties": {"anyOf": [{}, {"type": "null"}]}, "type": "object"}, "slots": {"items": {"type": "string"}, "type": "array"}, "source": {"type": "string"}, "status": {"type": "string"}, "string_serialization": {"type": "string"}, "structured_aliases": {"items": {}, "type": "array"}, "subclass_of": {"type": "string"}, "todos": {"items": {"type": "string"}, "type": "array"}, "tree_root": {"type": "boolean"}, "union_of": {"items": {"type": "string"}, "type": "array"}, "unique_keys": {"additionalProperties": {}, "type": "object"}, "values_from": {"items": {"type": "string"}, "type": "array"}}, "required": ["name"], "type": "object"} |
meta.schema.json | abstract | Indicates the class or slot cannot be directly instantiated and is intended for grouping purposes. | {"type": "boolean"} |
meta.schema.json | aliases | Alternate names/labels for the element. These do not alter the semantics of the schema, but may be useful to support search and alignment. | {"items": {"type": "string"}, "type": "array"} |
meta.schema.json | all_of | holds if all of the expressions hold | {"items": {}, "type": "array"} |
meta.schema.json | alt_descriptions | A sourced alternative description for an element | {"additionalProperties": {"anyOf": [{}, {"type": "string"}]}, "type": "object"} |
meta.schema.json | additionalProperties | text of an attributed description | {"type": "string"} |
meta.schema.json | annotations | a collection of tag/text tuples with the semantics of OWL Annotation | {"additionalProperties": {}, "type": "object"} |
meta.schema.json | any_of | holds if at least one of the expressions hold | {"items": {}, "type": "array"} |
meta.schema.json | apply_to | Used to extend class or slot definitions. For example, if we have a core schema where a gene has two slots for identifier and symbol, and we have a specialized schema for my_organism where we wish to add a slot systematic_name, we can avoid subclassing by defining a class gene_my_organism, adding the slot to this class, and then adding an apply_to pointing to the gene class. The new slot will be 'injected into' the gene class. | {"items": {"type": "string"}, "type": "array"} |
meta.schema.json | attributes | Inline definition of slots | {"additionalProperties": {"anyOf": [{}, {"type": "null"}]}, "type": "object"} |
meta.schema.json | broad_mappings | A list of terms from different schemas or terminology systems that have broader meaning. | {"items": {"type": "string"}, "type": "array"} |
meta.schema.json | categories | Controlled terms used to categorize an element. | {"items": {"type": "string"}, "type": "array"} |
meta.schema.json | children_are_mutually_disjoint | If true then all direct is_a children are mutually disjoint and share no instances in common | {"type": "boolean"} |
meta.schema.json | class_uri | URI of the class that provides a semantic interpretation of the element in a linked data context. The URI may come from any namespace and may be shared between schemas | {"type": "string"} |
meta.schema.json | classification_rules | The collection of classification rules that apply to all members of this class. Classification rules allow for automatically assigning the instantiated type of an instance. | {"items": {}, "type": "array"} |
meta.schema.json | close_mappings | A list of terms from different schemas or terminology systems that have close meaning. | {"items": {"type": "string"}, "type": "array"} |
meta.schema.json | comments | notes and comments about an element intended primarily for external consumption | {"items": {"type": "string"}, "type": "array"} |
meta.schema.json | conforms_to | An established standard to which the element conforms. | {"type": "string"} |
meta.schema.json | contributors | agent that contributed to the element | {"items": {"type": "string"}, "type": "array"} |
meta.schema.json | created_by | agent that created the element | {"type": "string"} |
meta.schema.json | created_on | time at which the element was created | {"format": "date-time", "type": "string"} |
meta.schema.json | defining_slots | The combination of is a plus defining slots form a genus-differentia definition, or the set of necessary and sufficient conditions that can be transformed into an OWL equivalence axiom | {"items": {"type": "string"}, "type": "array"} |
meta.schema.json | definition_uri | The native URI of the element. This is always within the namespace of the containing schema. Contrast with the assigned URI, via class_uri or slot_uri | {"type": "string"} |
meta.schema.json | deprecated | Description of why and when this element will no longer be used | {"type": "string"} |
meta.schema.json | deprecated_element_has_exact_replacement | When an element is deprecated, it can be automatically replaced by this uri or curie | {"type": "string"} |
meta.schema.json | deprecated_element_has_possible_replacement | When an element is deprecated, it can be potentially replaced by this uri or curie | {"type": "string"} |
meta.schema.json | description | a textual description of the element's purpose and use | {"type": "string"} |
meta.schema.json | disjoint_with | Two classes are disjoint if they have no instances in common, two slots are disjoint if they can never hold between the same two instances | {"items": {"type": "string"}, "type": "array"} |
meta.schema.json | exact_mappings | A list of terms from different schemas or terminology systems that have identical meaning. | {"items": {"type": "string"}, "type": "array"} |
meta.schema.json | exactly_one_of | holds if only one of the expressions hold | {"items": {}, "type": "array"} |
meta.schema.json | examples | example usages of an element | {"items": {}, "type": "array"} |
meta.schema.json | extensions | a tag/text tuple attached to an arbitrary element | {"additionalProperties": {}, "type": "object"} |
meta.schema.json | from_schema | id of the schema that defined the element | {"type": "string"} |
meta.schema.json | id_prefixes | An allowed list of prefixes for which identifiers must conform. The identifier of this class or slot must begin with the URIs referenced by this prefix | {"items": {"type": "string"}, "type": "array"} |
meta.schema.json | implements | An element in another schema which this element conforms to. The referenced element is not imported into the schema for the implementing element. However, the referenced schema may be used to check conformance of the implementing element. | {"items": {"type": "string"}, "type": "array"} |
meta.schema.json | imported_from | the imports entry that this element was derived from. Empty means primary source | {"type": "string"} |
meta.schema.json | in_language | the primary language used in the sources | {"type": "string"} |
meta.schema.json | in_subset | used to indicate membership of a term in a defined subset of terms used for a particular domain or application. | {"items": {"type": "string"}, "type": "array"} |
meta.schema.json | instantiates | An element in another schema which this element instantiates. | {"items": {"type": "string"}, "type": "array"} |
meta.schema.json | is_a | A primary parent class from which inheritable metaslots are propagated | {"type": "string"} |
meta.schema.json | keywords | Keywords or tags used to describe the element | {"items": {"type": "string"}, "type": "array"} |
meta.schema.json | last_updated_on | time at which the element was last updated | {"format": "date-time", "type": "string"} |
meta.schema.json | additionalProperties | a name assigned to an element in a given ontology | {"type": "string"} |
meta.schema.json | mappings | A list of terms from different schemas or terminology systems that have comparable meaning. These may include terms that are precisely equivalent, broader or narrower in meaning, or otherwise semantically related but not equivalent from a strict ontological perspective. | {"items": {"type": "string"}, "type": "array"} |
meta.schema.json | mixin | Indicates the class or slot is intended to be inherited from without being an is_a parent. mixins should not be inherited from using is_a, except by other mixins. | {"type": "boolean"} |
meta.schema.json | mixins | A collection of secondary parent mixin classes from which inheritable metaslots are propagated | {"items": {"type": "string"}, "type": "array"} |
meta.schema.json | modified_by | agent that modified the element | {"type": "string"} |
meta.schema.json | name | the unique name of the element within the context of the schema. Name is combined with the default prefix to form the globally unique subject of the target class. | {"type": "string"} |
meta.schema.json | narrow_mappings | A list of terms from different schemas or terminology systems that have narrower meaning. | {"items": {"type": "string"}, "type": "array"} |
meta.schema.json | none_of | holds if none of the expressions hold | {"items": {}, "type": "array"} |
meta.schema.json | notes | editorial notes about an element intended primarily for internal consumption | {"items": {"type": "string"}, "type": "array"} |
meta.schema.json | rank | the relative order in which the element occurs, lower values are given precedence | {"type": "integer"} |
meta.schema.json | related_mappings | A list of terms from different schemas or terminology systems that have related meaning. | {"items": {"type": "string"}, "type": "array"} |
meta.schema.json | represents_relationship | true if this class represents a relationship rather than an entity | {"type": "boolean"} |
meta.schema.json | rules | the collection of rules that apply to all members of this class | {"items": {}, "type": "array"} |
meta.schema.json | see_also | A list of related entities or URLs that may be of relevance | {"items": {"type": "string"}, "type": "array"} |
meta.schema.json | slot_conditions | expresses constraints on a group of slots for a class expression | {"additionalProperties": {"anyOf": [{}, {"type": "null"}]}, "type": "object"} |
meta.schema.json | slot_names_unique | if true then induced/mangled slot names are not created for class_usage and attributes | {"type": "boolean"} |
meta.schema.json | slot_usage | the refinement of a slot in the context of the containing class definition. | {"additionalProperties": {"anyOf": [{}, {"type": "null"}]}, "type": "object"} |
meta.schema.json | slots | collection of slot names that are applicable to a class | {"items": {"type": "string"}, "type": "array"} |
meta.schema.json | source | A related resource from which the element is derived. | {"type": "string"} |
meta.schema.json | status | status of the element | {"type": "string"} |
meta.schema.json | string_serialization | Used on a slot that stores the string serialization of the containing object. The syntax follows python formatted strings, with slot names enclosed in {}s. These are expanded using the values of those slots.
We call the slot with the serialization the s-slot, the slots used in the {}s are v-slots. If both s-slots and v-slots are populated on an object then the value of the s-slot should correspond to the expansion.
Implementations of frameworks may choose to use this property to either (a) PARSE: implement automated normalizations by parsing denormalized strings into complex objects (b) GENERARE: implement automated to_string labeling of complex objects
For example, a Measurement class may have 3 fields: unit, value, and string_value. The string_value slot may have a string_serialization of {value}{unit} such that if unit=cm and value=2, the value of string_value shouldd be 2cm | {"type": "string"} |
meta.schema.json | structured_aliases | A list of structured_alias objects, used to provide aliases in conjunction with additional metadata. | {"items": {}, "type": "array"} |
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