schema stringclasses 471
values | key stringlengths 0 203 | description stringlengths 0 4.37k | object stringlengths 2 322k |
|---|---|---|---|
meta.schema.json | from_schema | id of the schema that defined the element | {"type": "string"} |
meta.schema.json | imported_from | the imports entry that this element was derived from. Empty means primary source | {"type": "string"} |
meta.schema.json | in_language | the primary language used in the sources | {"type": "string"} |
meta.schema.json | in_subset | used to indicate membership of a term in a defined subset of terms used for a particular domain or application. | {"items": {"type": "string"}, "type": "array"} |
meta.schema.json | keywords | Keywords or tags used to describe the element | {"items": {"type": "string"}, "type": "array"} |
meta.schema.json | last_updated_on | time at which the element was last updated | {"format": "date-time", "type": "string"} |
meta.schema.json | mappings | A list of terms from different schemas or terminology systems that have comparable meaning. These may include terms that are precisely equivalent, broader or narrower in meaning, or otherwise semantically related but not equivalent from a strict ontological perspective. | {"items": {"type": "string"}, "type": "array"} |
meta.schema.json | modified_by | agent that modified the element | {"type": "string"} |
meta.schema.json | narrow_mappings | A list of terms from different schemas or terminology systems that have narrower meaning. | {"items": {"type": "string"}, "type": "array"} |
meta.schema.json | notes | editorial notes about an element intended primarily for internal consumption | {"items": {"type": "string"}, "type": "array"} |
meta.schema.json | open_world | if true, the the postconditions may be omitted in instance data, but it is valid for an inference engine to add these | {"type": "boolean"} |
meta.schema.json | postconditions | an expression that must hold for an instance of the class, if the preconditions hold | {} |
meta.schema.json | preconditions | an expression that must hold in order for the rule to be applicable to an instance | {} |
meta.schema.json | rank | the relative order in which the element occurs, lower values are given precedence | {"type": "integer"} |
meta.schema.json | related_mappings | A list of terms from different schemas or terminology systems that have related meaning. | {"items": {"type": "string"}, "type": "array"} |
meta.schema.json | see_also | A list of related entities or URLs that may be of relevance | {"items": {"type": "string"}, "type": "array"} |
meta.schema.json | source | A related resource from which the element is derived. | {"type": "string"} |
meta.schema.json | status | status of the element | {"type": "string"} |
meta.schema.json | structured_aliases | A list of structured_alias objects, used to provide aliases in conjunction with additional metadata. | {"items": {}, "type": "array"} |
meta.schema.json | title | A concise human-readable display label for the element. The title should mirror the name, and should use ordinary textual punctuation. | {"type": "string"} |
meta.schema.json | todos | Outstanding issues that needs resolution | {"items": {"type": "string"}, "type": "array"} |
meta.schema.json | EnumDefinition | an element whose instances must be drawn from a specified set of permissible values | {"additionalProperties": false, "properties": {"abstract": {"type": "boolean"}, "aliases": {"items": {"type": "string"}, "type": "array"}, "alt_descriptions": {"additionalProperties": {"anyOf": [{}, {"type": "string"}]}, "type": "object"}, "annotations": {"additionalProperties": {}, "type": "object"}, "apply_to": {"items": {"type": "string"}, "type": "array"}, "broad_mappings": {"items": {"type": "string"}, "type": "array"}, "categories": {"items": {"type": "string"}, "type": "array"}, "close_mappings": {"items": {"type": "string"}, "type": "array"}, "code_set": {"type": "string"}, "code_set_tag": {"type": "string"}, "code_set_version": {"type": "string"}, "comments": {"items": {"type": "string"}, "type": "array"}, "concepts": {"items": {"type": "string"}, "type": "array"}, "conforms_to": {"type": "string"}, "contributors": {"items": {"type": "string"}, "type": "array"}, "created_by": {"type": "string"}, "created_on": {"format": "date-time", "type": "string"}, "definition_uri": {"type": "string"}, "deprecated": {"type": "string"}, "deprecated_element_has_exact_replacement": {"type": "string"}, "deprecated_element_has_possible_replacement": {"type": "string"}, "enum_uri": {"type": "string"}, "exact_mappings": {"items": {"type": "string"}, "type": "array"}, "examples": {"items": {}, "type": "array"}, "extensions": {"additionalProperties": {}, "type": "object"}, "from_schema": {"type": "string"}, "id_prefixes": {"items": {"type": "string"}, "type": "array"}, "implements": {"items": {"type": "string"}, "type": "array"}, "imported_from": {"type": "string"}, "in_language": {"type": "string"}, "in_subset": {"items": {"type": "string"}, "type": "array"}, "include": {"items": {}, "type": "array"}, "inherits": {"items": {"type": "string"}, "type": "array"}, "instantiates": {"items": {"type": "string"}, "type": "array"}, "is_a": {"type": "string"}, "keywords": {"items": {"type": "string"}, "type": "array"}, "last_updated_on": {"format": "date-time", "type": "string"}, "local_names": {"additionalProperties": {"anyOf": [{}, {"type": "string"}]}, "type": "object"}, "mappings": {"items": {"type": "string"}, "type": "array"}, "matches": {}, "minus": {"items": {}, "type": "array"}, "mixin": {"type": "boolean"}, "mixins": {"items": {"type": "string"}, "type": "array"}, "modified_by": {"type": "string"}, "name": {"type": "string"}, "narrow_mappings": {"items": {"type": "string"}, "type": "array"}, "notes": {"items": {"type": "string"}, "type": "array"}, "permissible_values": {"additionalProperties": {"anyOf": [{}, {"type": "null"}]}, "type": "object"}, "pv_formula": {}, "rank": {"type": "integer"}, "reachable_from": {}, "related_mappings": {"items": {"type": "string"}, "type": "array"}, "see_also": {"items": {"type": "string"}, "type": "array"}, "source": {"type": "string"}, "status": {"type": "string"}, "string_serialization": {"type": "string"}, "structured_aliases": {"items": {}, "type": "array"}, "todos": {"items": {"type": "string"}, "type": "array"}, "values_from": {"items": {"type": "string"}, "type": "array"}}, "required": ["name"], "type": "object"} |
meta.schema.json | abstract | Indicates the class or slot cannot be directly instantiated and is intended for grouping purposes. | {"type": "boolean"} |
meta.schema.json | aliases | Alternate names/labels for the element. These do not alter the semantics of the schema, but may be useful to support search and alignment. | {"items": {"type": "string"}, "type": "array"} |
meta.schema.json | alt_descriptions | A sourced alternative description for an element | {"additionalProperties": {"anyOf": [{}, {"type": "string"}]}, "type": "object"} |
meta.schema.json | additionalProperties | text of an attributed description | {"type": "string"} |
meta.schema.json | annotations | a collection of tag/text tuples with the semantics of OWL Annotation | {"additionalProperties": {}, "type": "object"} |
meta.schema.json | apply_to | Used to extend class or slot definitions. For example, if we have a core schema where a gene has two slots for identifier and symbol, and we have a specialized schema for my_organism where we wish to add a slot systematic_name, we can avoid subclassing by defining a class gene_my_organism, adding the slot to this class, and then adding an apply_to pointing to the gene class. The new slot will be 'injected into' the gene class. | {"items": {"type": "string"}, "type": "array"} |
meta.schema.json | broad_mappings | A list of terms from different schemas or terminology systems that have broader meaning. | {"items": {"type": "string"}, "type": "array"} |
meta.schema.json | categories | Controlled terms used to categorize an element. | {"items": {"type": "string"}, "type": "array"} |
meta.schema.json | close_mappings | A list of terms from different schemas or terminology systems that have close meaning. | {"items": {"type": "string"}, "type": "array"} |
meta.schema.json | code_set | the identifier of an enumeration code set. | {"type": "string"} |
meta.schema.json | code_set_tag | the version tag of the enumeration code set | {"type": "string"} |
meta.schema.json | code_set_version | the version identifier of the enumeration code set | {"type": "string"} |
meta.schema.json | comments | notes and comments about an element intended primarily for external consumption | {"items": {"type": "string"}, "type": "array"} |
meta.schema.json | concepts | A list of identifiers that are used to construct a set of permissible values | {"items": {"type": "string"}, "type": "array"} |
meta.schema.json | conforms_to | An established standard to which the element conforms. | {"type": "string"} |
meta.schema.json | contributors | agent that contributed to the element | {"items": {"type": "string"}, "type": "array"} |
meta.schema.json | created_by | agent that created the element | {"type": "string"} |
meta.schema.json | created_on | time at which the element was created | {"format": "date-time", "type": "string"} |
meta.schema.json | definition_uri | The native URI of the element. This is always within the namespace of the containing schema. Contrast with the assigned URI, via class_uri or slot_uri | {"type": "string"} |
meta.schema.json | deprecated | Description of why and when this element will no longer be used | {"type": "string"} |
meta.schema.json | deprecated_element_has_exact_replacement | When an element is deprecated, it can be automatically replaced by this uri or curie | {"type": "string"} |
meta.schema.json | deprecated_element_has_possible_replacement | When an element is deprecated, it can be potentially replaced by this uri or curie | {"type": "string"} |
meta.schema.json | description | a textual description of the element's purpose and use | {"type": "string"} |
meta.schema.json | enum_uri | URI of the enum that provides a semantic interpretation of the element in a linked data context. The URI may come from any namespace and may be shared between schemas | {"type": "string"} |
meta.schema.json | exact_mappings | A list of terms from different schemas or terminology systems that have identical meaning. | {"items": {"type": "string"}, "type": "array"} |
meta.schema.json | examples | example usages of an element | {"items": {}, "type": "array"} |
meta.schema.json | extensions | a tag/text tuple attached to an arbitrary element | {"additionalProperties": {}, "type": "object"} |
meta.schema.json | from_schema | id of the schema that defined the element | {"type": "string"} |
meta.schema.json | id_prefixes | An allowed list of prefixes for which identifiers must conform. The identifier of this class or slot must begin with the URIs referenced by this prefix | {"items": {"type": "string"}, "type": "array"} |
meta.schema.json | implements | An element in another schema which this element conforms to. The referenced element is not imported into the schema for the implementing element. However, the referenced schema may be used to check conformance of the implementing element. | {"items": {"type": "string"}, "type": "array"} |
meta.schema.json | imported_from | the imports entry that this element was derived from. Empty means primary source | {"type": "string"} |
meta.schema.json | in_language | the primary language used in the sources | {"type": "string"} |
meta.schema.json | in_subset | used to indicate membership of a term in a defined subset of terms used for a particular domain or application. | {"items": {"type": "string"}, "type": "array"} |
meta.schema.json | include | An enum expression that yields a list of permissible values that are to be included, after subtracting the minus set | {"items": {}, "type": "array"} |
meta.schema.json | inherits | An enum definition that is used as the basis to create a new enum | {"items": {"type": "string"}, "type": "array"} |
meta.schema.json | instantiates | An element in another schema which this element instantiates. | {"items": {"type": "string"}, "type": "array"} |
meta.schema.json | is_a | A primary parent class or slot from which inheritable metaslots are propagated from. While multiple inheritance is not allowed, mixins can be provided effectively providing the same thing. The semantics are the same when translated to formalisms that allow MI (e.g. RDFS/OWL). When translating to a SI framework (e.g. java classes, python classes) then is a is used. When translating a framework without polymorphism (e.g. json-schema, solr document schema) then is a and mixins are recursively unfolded | {"type": "string"} |
meta.schema.json | keywords | Keywords or tags used to describe the element | {"items": {"type": "string"}, "type": "array"} |
meta.schema.json | last_updated_on | time at which the element was last updated | {"format": "date-time", "type": "string"} |
meta.schema.json | additionalProperties | a name assigned to an element in a given ontology | {"type": "string"} |
meta.schema.json | mappings | A list of terms from different schemas or terminology systems that have comparable meaning. These may include terms that are precisely equivalent, broader or narrower in meaning, or otherwise semantically related but not equivalent from a strict ontological perspective. | {"items": {"type": "string"}, "type": "array"} |
meta.schema.json | matches | Specifies a match query that is used to calculate the list of permissible values | {} |
meta.schema.json | minus | An enum expression that yields a list of permissible values that are to be subtracted from the enum | {"items": {}, "type": "array"} |
meta.schema.json | mixin | Indicates the class or slot is intended to be inherited from without being an is_a parent. mixins should not be inherited from using is_a, except by other mixins. | {"type": "boolean"} |
meta.schema.json | mixins | A collection of secondary parent classes or slots from which inheritable metaslots are propagated from. | {"items": {"type": "string"}, "type": "array"} |
meta.schema.json | modified_by | agent that modified the element | {"type": "string"} |
meta.schema.json | name | the unique name of the element within the context of the schema. Name is combined with the default prefix to form the globally unique subject of the target class. | {"type": "string"} |
meta.schema.json | narrow_mappings | A list of terms from different schemas or terminology systems that have narrower meaning. | {"items": {"type": "string"}, "type": "array"} |
meta.schema.json | notes | editorial notes about an element intended primarily for internal consumption | {"items": {"type": "string"}, "type": "array"} |
meta.schema.json | permissible_values | A list of possible values for a slot range | {"additionalProperties": {"anyOf": [{}, {"type": "null"}]}, "type": "object"} |
meta.schema.json | pv_formula | Defines the specific formula to be used to generate the permissible values. | {} |
meta.schema.json | rank | the relative order in which the element occurs, lower values are given precedence | {"type": "integer"} |
meta.schema.json | reachable_from | Specifies a query for obtaining a list of permissible values based on graph reachability | {} |
meta.schema.json | related_mappings | A list of terms from different schemas or terminology systems that have related meaning. | {"items": {"type": "string"}, "type": "array"} |
meta.schema.json | see_also | A list of related entities or URLs that may be of relevance | {"items": {"type": "string"}, "type": "array"} |
meta.schema.json | source | A related resource from which the element is derived. | {"type": "string"} |
meta.schema.json | status | status of the element | {"type": "string"} |
meta.schema.json | string_serialization | Used on a slot that stores the string serialization of the containing object. The syntax follows python formatted strings, with slot names enclosed in {}s. These are expanded using the values of those slots.
We call the slot with the serialization the s-slot, the slots used in the {}s are v-slots. If both s-slots and v-slots are populated on an object then the value of the s-slot should correspond to the expansion.
Implementations of frameworks may choose to use this property to either (a) PARSE: implement automated normalizations by parsing denormalized strings into complex objects (b) GENERARE: implement automated to_string labeling of complex objects
For example, a Measurement class may have 3 fields: unit, value, and string_value. The string_value slot may have a string_serialization of {value}{unit} such that if unit=cm and value=2, the value of string_value shouldd be 2cm | {"type": "string"} |
meta.schema.json | structured_aliases | A list of structured_alias objects, used to provide aliases in conjunction with additional metadata. | {"items": {}, "type": "array"} |
meta.schema.json | title | A concise human-readable display label for the element. The title should mirror the name, and should use ordinary textual punctuation. | {"type": "string"} |
meta.schema.json | todos | Outstanding issues that needs resolution | {"items": {"type": "string"}, "type": "array"} |
meta.schema.json | values_from | The identifier of a "value set" -- a set of identifiers that form the possible values for the range of a slot. Note: this is different than 'subproperty_of' in that 'subproperty_of' is intended to be a single ontology term while 'values_from' is the identifier of an entire value set. Additionally, this is different than an enumeration in that in an enumeration, the values of the enumeration are listed directly in the model itself. Setting this property on a slot does not guarantee an expansion of the ontological hierarchy into an enumerated list of possible values in every serialization of the model. | {"items": {"type": "string"}, "type": "array"} |
meta.schema.json | EnumDefinition__identifier_optional | an element whose instances must be drawn from a specified set of permissible values | {"additionalProperties": false, "properties": {"abstract": {"type": "boolean"}, "aliases": {"items": {"type": "string"}, "type": "array"}, "alt_descriptions": {"additionalProperties": {"anyOf": [{}, {"type": "string"}]}, "type": "object"}, "annotations": {"additionalProperties": {}, "type": "object"}, "apply_to": {"items": {"type": "string"}, "type": "array"}, "broad_mappings": {"items": {"type": "string"}, "type": "array"}, "categories": {"items": {"type": "string"}, "type": "array"}, "close_mappings": {"items": {"type": "string"}, "type": "array"}, "code_set": {"type": "string"}, "code_set_tag": {"type": "string"}, "code_set_version": {"type": "string"}, "comments": {"items": {"type": "string"}, "type": "array"}, "concepts": {"items": {"type": "string"}, "type": "array"}, "conforms_to": {"type": "string"}, "contributors": {"items": {"type": "string"}, "type": "array"}, "created_by": {"type": "string"}, "created_on": {"format": "date-time", "type": "string"}, "definition_uri": {"type": "string"}, "deprecated": {"type": "string"}, "deprecated_element_has_exact_replacement": {"type": "string"}, "deprecated_element_has_possible_replacement": {"type": "string"}, "enum_uri": {"type": "string"}, "exact_mappings": {"items": {"type": "string"}, "type": "array"}, "examples": {"items": {}, "type": "array"}, "extensions": {"additionalProperties": {}, "type": "object"}, "from_schema": {"type": "string"}, "id_prefixes": {"items": {"type": "string"}, "type": "array"}, "implements": {"items": {"type": "string"}, "type": "array"}, "imported_from": {"type": "string"}, "in_language": {"type": "string"}, "in_subset": {"items": {"type": "string"}, "type": "array"}, "include": {"items": {}, "type": "array"}, "inherits": {"items": {"type": "string"}, "type": "array"}, "instantiates": {"items": {"type": "string"}, "type": "array"}, "is_a": {"type": "string"}, "keywords": {"items": {"type": "string"}, "type": "array"}, "last_updated_on": {"format": "date-time", "type": "string"}, "local_names": {"additionalProperties": {"anyOf": [{}, {"type": "string"}]}, "type": "object"}, "mappings": {"items": {"type": "string"}, "type": "array"}, "matches": {}, "minus": {"items": {}, "type": "array"}, "mixin": {"type": "boolean"}, "mixins": {"items": {"type": "string"}, "type": "array"}, "modified_by": {"type": "string"}, "name": {"type": "string"}, "narrow_mappings": {"items": {"type": "string"}, "type": "array"}, "notes": {"items": {"type": "string"}, "type": "array"}, "permissible_values": {"additionalProperties": {"anyOf": [{}, {"type": "null"}]}, "type": "object"}, "pv_formula": {}, "rank": {"type": "integer"}, "reachable_from": {}, "related_mappings": {"items": {"type": "string"}, "type": "array"}, "see_also": {"items": {"type": "string"}, "type": "array"}, "source": {"type": "string"}, "status": {"type": "string"}, "string_serialization": {"type": "string"}, "structured_aliases": {"items": {}, "type": "array"}, "todos": {"items": {"type": "string"}, "type": "array"}, "values_from": {"items": {"type": "string"}, "type": "array"}}, "required": [], "type": "object"} |
meta.schema.json | abstract | Indicates the class or slot cannot be directly instantiated and is intended for grouping purposes. | {"type": "boolean"} |
meta.schema.json | aliases | Alternate names/labels for the element. These do not alter the semantics of the schema, but may be useful to support search and alignment. | {"items": {"type": "string"}, "type": "array"} |
meta.schema.json | alt_descriptions | A sourced alternative description for an element | {"additionalProperties": {"anyOf": [{}, {"type": "string"}]}, "type": "object"} |
meta.schema.json | additionalProperties | text of an attributed description | {"type": "string"} |
meta.schema.json | annotations | a collection of tag/text tuples with the semantics of OWL Annotation | {"additionalProperties": {}, "type": "object"} |
meta.schema.json | apply_to | Used to extend class or slot definitions. For example, if we have a core schema where a gene has two slots for identifier and symbol, and we have a specialized schema for my_organism where we wish to add a slot systematic_name, we can avoid subclassing by defining a class gene_my_organism, adding the slot to this class, and then adding an apply_to pointing to the gene class. The new slot will be 'injected into' the gene class. | {"items": {"type": "string"}, "type": "array"} |
meta.schema.json | broad_mappings | A list of terms from different schemas or terminology systems that have broader meaning. | {"items": {"type": "string"}, "type": "array"} |
meta.schema.json | categories | Controlled terms used to categorize an element. | {"items": {"type": "string"}, "type": "array"} |
meta.schema.json | close_mappings | A list of terms from different schemas or terminology systems that have close meaning. | {"items": {"type": "string"}, "type": "array"} |
meta.schema.json | code_set | the identifier of an enumeration code set. | {"type": "string"} |
meta.schema.json | code_set_tag | the version tag of the enumeration code set | {"type": "string"} |
meta.schema.json | code_set_version | the version identifier of the enumeration code set | {"type": "string"} |
meta.schema.json | comments | notes and comments about an element intended primarily for external consumption | {"items": {"type": "string"}, "type": "array"} |
meta.schema.json | concepts | A list of identifiers that are used to construct a set of permissible values | {"items": {"type": "string"}, "type": "array"} |
meta.schema.json | conforms_to | An established standard to which the element conforms. | {"type": "string"} |
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