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TestContainers_GAME

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TestContainers_GAME
File size: 4,954 Bytes
294b529
0ff76ac
294b529
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
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{
    "readout": "point",
    "prediction_tasks": [
        {
            "name": "K562_linear",
            "type": "expression",
            "cell_type": "K562",
            "species": "homo_sapiens",
            "scale": "linear"
        }
    ],
    "upstream_seq": "ATGCATGC",
    "downstream_seq": "GCTAGCTA",
    "sequences": {
        "short_seq":     "ATCGATCGATGCTAC",
        "boundary_1000": "ATGCATGATGCTACGTACGATCGTAGCTGCATGCTAGCGATCGTAGCTAGCTGACTGATCGTAGGGTACGACTGTAGCTCAGTCGATCTGAAAAAAAAAATGCATGATGCTACGTACGATCGTAGCTGCATGCTAGCGATCGTAGCTAGCTGACTGATCGTAGGGTACGACTGTAGCTCAGTCGATCTGAAAAAAAAAATGCATGATGCTACGTACGATCGTAGCTGCATGCTAGCGATCGTAGCTAGCTGACTGATCGTAGGGTACGACTGTAGCTCAGTCGATCTGAAAAAAAAAATGCATGATGCTACGTACGATCGTAGCTGCATGCTAGCGATCGTAGCTAGCTGACTGATCGTAGGGTACGACTGTAGCTCAGTCGATCTGAAAAAAAAAATGCATGATGCTACGTACGATCGTAGCTGCATGCTAGCGATCGTAGCTAGCTGACTGATCGTAGGGTACGACTGTAGCTCAGTCGATCTGAAAAAAAAAATGCATGATGCTACGTACGATCGTAGCTGCATGCTAGCGATCGTAGCTAGCTGACTGATCGTAGGGTACGACTGTAGCTCAGTCGATCTGAAAAAAAAAATGCATGATGCTACGTACGATCGTAGCTGCATGCTAGCGATCGTAGCTAGCTGACTGATCGTAGGGTACGACTGTAGCTCAGTCGATCTGAAAAAAAAAATGCATGATGCTACGTACGATCGTAGCTGCATGCTAGCGATCGTAGCTAGCTGACTGATCGTAGGGTACGACTGTAGCTCAGTCGATCTGAAAAAAAAAATGCATGATGCTACGTACGATCGTAGCTGCATGCTAGCGATCGTAGCTAGCTGACTGATCGTAGGGTACGACTGTAGCTCAGTCGATCTGAAAAAAAAAATGCATGATGCTACGTACGATCGTAGCTGCATGCTAGCGATCGTAGCTAGCTGACTGATCGTAGGGTACGACTGTAGCTCAGTCGATCTGAAAAAAAAAA",
        "long_seq":      "AACCACTGTGTACTCGTTATAACATCTGGCAGTTAAAGTCGGGAGAATAGGAGCCGCAATACACAGTTTACCGCATCTAGACCTAACTGAGATACTGCCATAGACGACTAGCCATCCCTCTGGCTCTTAGATAGCCCGATACAGTGATTTTGAAAGGTTTGCGGGGCACAGCTATGACTTGCTTAGCTACGTGTGAGGGAAGGAACTTTTGCGTATTTGTATGTTCACCCGTCTACTACGCATGCGGGCAGATTATGTAGGTTGAGAGATGCGGGAGAAGTTCTCGACCTTCCCGTGGGACGTGAACCTATCCCCTAATAGAGCATTCCGTTCGAGCATGGCAGTAAGTACGCCTTCTCAATTGTGCTAACCTTCATCCCTATCAAAGCTTGGAGCCAATGATCAGGGTTATTCCCTTGGGACAGACTTCCTACTCACAGTCGGTCACATTGGGCTACTCCATGGGTCTTCAGCTTGACCCGGTCTGTTGGGCCGCGATTACGTGAGTTAGGGCCCCGGACTGCGCTGTATAGTCGATTCTCATCCGGCCCCCACATCTGGAAACCCCAACTTATTTAGATAACATGATTAGCCGAAGTTGCACGGCGTGTCCACCGTGGAGTCCTCCCCGGGTGTCCCTCCTTCATTTGACGATAAGCAGCGGCTACCACCATTGATTAACACAAGGAACGGTGATGTTAACATAGATTCGGCACATTACTCTTGTAGGTGTGGAATCACTTAGCTACGCGGCGAAGCCTTATGGCAAAACCGATGGGCAATGATTCGGGTAGCGCTAAAAGTCCATAGCACGTGCATCCCAACGTGGCGTGCGTACAGCTTGACCACCGCTTCACGCTAAGGTGCTGGCCACATGCTAAATTGATGCGCCTGCACTGCTCAAAGGATAATTACGAAGCGGGCGGCCTGGCGGGAGCACTACCCCATCGACGCGTACTCGAATACTGTTTATTGCTCACACATGAACAAATTAGTAGAGTGCCACTTTCAGCCCTCTTGTCGTCGGCGATGTGTGTAAAATGGCGTTGATGTGGATCGACTCTATAAAGGTATCTACTGATGCGTAGGGAGATCCGGAATCTATTGGCCTATGTCACTGAAACTATCCAAACACCCCATGTCGATACTGAACGTATCGACGCATACCTCCTTCCTTGAAAACGCACAATCATACAACTGGGCACATAATGCGTACGCCCATCTAGTACACCCATCTCTGTGGGTCCAGTTCAAGAGCTGGAAGAGCACCCTCCACAAGGTCAAGTGGTATCCTGGTAAGGTAAGCTCGTACCGTGATTCATGCGACAGGGGTAAGACCATCAGTAGTAGGGATAGTGCCAAACCTCACTCACCACTGCCAATAAGGGGTCCTTACCTGAAGAATAAGTGTCAGCCAGTGTAACCCGATGAGGAACCCAAAAGGCGAACCGGGCCAGACAACCCGGCGGTATCGCACTCAAAGCCGGGACACGACGCGTCACAGCCGGTAAGAGTAACCCCGGAGTGAAGACCTATGGGGCTGGATAAAACTGCCGTGGTAACCGCCTTCAACAACCCGAATACGTGGCACTTCAGGAGGCGCCCGGAGGGGGGATGTTTTCTACTATTCGAGGCCGTTCGTTATAACTAGTTGCGTTCCTAGCCGCTATAATTGTCTCTTTGCCGACTAATGAGAACAACCACACCATAGCGATTTGACGCGGCGCCTCGGAATACCGTTTCAGCAGGCGCTTGGTAAGGCCATCGCGAATACCAGGTATCGTGTAAGTAGCGTAGGCCCGCACGCAAGATAAACTGCTAGGGAACCGCGTTTCCACGACCGGTGCACGATTTAATTTCGCCGACGTGATGACATTCCAGGCAGTGCCTCTGCCGCCGGACCCCTCTCGTGATTGGGTAGCTGGACATGCCCTTGTAAGATATAACAAGAGCCTGCCTGTCTAATGATCTCACGGCGAAAGTCGGGGAGACAGCAGCGGCTGCAGACATTATACCGCAACAACACTAAGGTGAGATAACTCCGTAATTGACTACGCGTTCCTCTAGACCTTACTTGACCGGATACAGTGTCTTTGACACGTTTATGGGTTACAGCAATCACATCCAAGACTGGCTATGCACGAAGCAACTCTTGAGTGTTAAAATGTTGACCCCTGTATTTGGGATGCGGGTAGTAGATGAGTGCAGGGACTCCGAGGTCAAGTACATTACCCTCTCATAGGGGGCGTTCTAGATCACGTTACCACCATATCATTCGAGCATGACACCATCTCCGCTGTGCCCATCCTAGTAGTCATTATTCCTATCACGCTTTCGAGTGTCTGGTGGCGGATATCCCCCACGAATGAAAATGTTTTTCGCTGACAGTCATATTGGGGTGCTCCTAAGCTTTTCCACTTGGCTGGGTCAGCTAGGCCTCCGTGCCCGGAGTTTCGGCGCAGTGCTGCCGACAGCCGGCCATTGTCTTTGGGGCCTCATTCGAGGGTACCCGGACCTATCTTGTCGGGACCACCCGGGGTAGTCGTTGGGCTTATGCACCGAAAAGCCCTGCGCCGGCCTCCCCGCTACGGAAGGTGATAAGCTCCGGCAAGCAATTATGAACAACGCAAGGATCGCGGATATAAACAGAGAAACGGCTGATTACACCTGTTCGTGTGGTATCGGTAAATAGCCTCGCGGAGCCTTATGCCATACTCGTCCGCGGAGCACTCTGGTAATGCATATGGTCCACAGGACATTCGTCGCTTCCGGGTATGCGCTCTATTTGACGGTCCTTTGGCGCACAGATGCTGGCCACCATTTAAATTAGAGCGACTCCACATCTGTAAGGTCCGCCACGCAGACGACAGCCCAGGGAGACCACTGACCGATCTACCTGAACGGCAACCTTCTGTATCGTACTGGGGCGGAGAGATAACTACAGTGCCGCTTACAGCCCCTCTGTCGTCGCCGACGTCTGTAGTCTAGCCTCATTATGAT",
        "range_at_start": "ATGCATGATGCTACGTACGATCGTAGCTGCATGCTAGCGATCGTAGCTAGCTGACTGATCGTAGGGTACGACTGTAGCTCAGTCGATCTGAAAAAAAAAA",
        "range_at_end":   "ATGCATGATGCTACGTACGATCGTAGCTGCATGCTAGCGATCGTAGCTAGCTGACTGATCGTAGGGTACGACTGTAGCTCAGTCGATCTGAAAAAAAAAA",
        "full_range":     "ATGCATGATGCTACGTACGATCGTAGCTGCATGCTAGCGATCGTAGCTAGCTGACTGATCGTAGGGTACGACTGTAGCTCAGTCGATCTGAAAAAAAAAA",
        "empty_range":    "ATGCATGATGCTACGTACGATCGTAGCTGCATGCTAGCGATCGTAGCTAGCTGACTGATCGTAGGGTACGACTGTAGCTCAGTCGATCTGAAAAAAAAAA"
    }
}