| { |
| "readout": "interaction_matrix", |
| "prediction_tasks": [ |
| { |
| "name": "K562_linear", |
| "type": "expression", |
| "cell_type": "K562", |
| "species": "homo_sapiens", |
| "scale": "linear" |
| }, |
| { |
| "name": "K562_log", |
| "type": "expression", |
| "cell_type": "K562", |
| "species": "homo_sapiens", |
| "scale": "log" |
| }, |
| { |
| "name": "hepg2_linear", |
| "type": "expression", |
| "cell_type": "hepg2", |
| "species": "mus_musculus", |
| "scale": "linear" |
| }, |
| { |
| "name": "matcher_test", |
| "type": "expression", |
| "cell_type": "HeLa", |
| "species": "homo_sapiens", |
| "scale": "linear" |
| }, |
| { |
| "name": "task2", |
| "type": "expression", |
| "cell_type": "ww6", |
| "species": "mus_musculus", |
| "scale": "linear" |
| }, |
| { |
| "name": "task3", |
| "type": "accessibility", |
| "cell_type": "liver", |
| "species": "mus_musculus", |
| "scale": "log" |
| } |
| ], |
| "upstream_seq": "ATGCATGC", |
| "downstream_seq": "GCTAGCTA", |
| "sequences": { |
| "short_seq": "ATCGATCGATGCTAC", |
| "boundary_1000": "ATGCATGATGCTACGTACGATCGTAGCTGCATGCTAGCGATCGTAGCTAGCTGACTGATCGTAGGGTACGACTGTAGCTCAGTCGATCTGAAAAAAAAAATGCATGATGCTACGTACGATCGTAGCTGCATGCTAGCGATCGTAGCTAGCTGACTGATCGTAGGGTACGACTGTAGCTCAGTCGATCTGAAAAAAAAAATGCATGATGCTACGTACGATCGTAGCTGCATGCTAGCGATCGTAGCTAGCTGACTGATCGTAGGGTACGACTGTAGCTCAGTCGATCTGAAAAAAAAAATGCATGATGCTACGTACGATCGTAGCTGCATGCTAGCGATCGTAGCTAGCTGACTGATCGTAGGGTACGACTGTAGCTCAGTCGATCTGAAAAAAAAAATGCATGATGCTACGTACGATCGTAGCTGCATGCTAGCGATCGTAGCTAGCTGACTGATCGTAGGGTACGACTGTAGCTCAGTCGATCTGAAAAAAAAAATGCATGATGCTACGTACGATCGTAGCTGCATGCTAGCGATCGTAGCTAGCTGACTGATCGTAGGGTACGACTGTAGCTCAGTCGATCTGAAAAAAAAAATGCATGATGCTACGTACGATCGTAGCTGCATGCTAGCGATCGTAGCTAGCTGACTGATCGTAGGGTACGACTGTAGCTCAGTCGATCTGAAAAAAAAAATGCATGATGCTACGTACGATCGTAGCTGCATGCTAGCGATCGTAGCTAGCTGACTGATCGTAGGGTACGACTGTAGCTCAGTCGATCTGAAAAAAAAAATGCATGATGCTACGTACGATCGTAGCTGCATGCTAGCGATCGTAGCTAGCTGACTGATCGTAGGGTACGACTGTAGCTCAGTCGATCTGAAAAAAAAAATGCATGATGCTACGTACGATCGTAGCTGCATGCTAGCGATCGTAGCTAGCTGACTGATCGTAGGGTACGACTGTAGCTCAGTCGATCTGAAAAAAAAAA", |
| "long_seq": "AACCACTGTGTACTCGTTATAACATCTGGCAGTTAAAGTCGGGAGAATAGGAGCCGCAATACACAGTTTACCGCATCTAGACCTAACTGAGATACTGCCATAGACGACTAGCCATCCCTCTGGCTCTTAGATAGCCCGATACAGTGATTTTGAAAGGTTTGCGGGGCACAGCTATGACTTGCTTAGCTACGTGTGAGGGAAGGAACTTTTGCGTATTTGTATGTTCACCCGTCTACTACGCATGCGGGCAGATTATGTAGGTTGAGAGATGCGGGAGAAGTTCTCGACCTTCCCGTGGGACGTGAACCTATCCCCTAATAGAGCATTCCGTTCGAGCATGGCAGTAAGTACGCCTTCTCAATTGTGCTAACCTTCATCCCTATCAAAGCTTGGAGCCAATGATCAGGGTTATTCCCTTGGGACAGACTTCCTACTCACAGTCGGTCACATTGGGCTACTCCATGGGTCTTCAGCTTGACCCGGTCTGTTGGGCCGCGATTACGTGAGTTAGGGCCCCGGACTGCGCTGTATAGTCGATTCTCATCCGGCCCCCACATCTGGAAACCCCAACTTATTTAGATAACATGATTAGCCGAAGTTGCACGGCGTGTCCACCGTGGAGTCCTCCCCGGGTGTCCCTCCTTCATTTGACGATAAGCAGCGGCTACCACCATTGATTAACACAAGGAACGGTGATGTTAACATAGATTCGGCACATTACTCTTGTAGGTGTGGAATCACTTAGCTACGCGGCGAAGCCTTATGGCAAAACCGATGGGCAATGATTCGGGTAGCGCTAAAAGTCCATAGCACGTGCATCCCAACGTGGCGTGCGTACAGCTTGACCACCGCTTCACGCTAAGGTGCTGGCCACATGCTAAATTGATGCGCCTGCACTGCTCAAAGGATAATTACGAAGCGGGCGGCCTGGCGGGAGCACTACCCCATCGACGCGTACTCGAATACTGTTTATTGCTCACACATGAACAAATTAGTAGAGTGCCACTTTCAGCCCTCTTGTCGTCGGCGATGTGTGTAAAATGGCGTTGATGTGGATCGACTCTATAAAGGTATCTACTGATGCGTAGGGAGATCCGGAATCTATTGGCCTATGTCACTGAAACTATCCAAACACCCCATGTCGATACTGAACGTATCGACGCATACCTCCTTCCTTGAAAACGCACAATCATACAACTGGGCACATAATGCGTACGCCCATCTAGTACACCCATCTCTGTGGGTCCAGTTCAAGAGCTGGAAGAGCACCCTCCACAAGGTCAAGTGGTATCCTGGTAAGGTAAGCTCGTACCGTGATTCATGCGACAGGGGTAAGACCATCAGTAGTAGGGATAGTGCCAAACCTCACTCACCACTGCCAATAAGGGGTCCTTACCTGAAGAATAAGTGTCAGCCAGTGTAACCCGATGAGGAACCCAAAAGGCGAACCGGGCCAGACAACCCGGCGGTATCGCACTCAAAGCCGGGACACGACGCGTCACAGCCGGTAAGAGTAACCCCGGAGTGAAGACCTATGGGGCTGGATAAAACTGCCGTGGTAACCGCCTTCAACAACCCGAATACGTGGCACTTCAGGAGGCGCCCGGAGGGGGGATGTTTTCTACTATTCGAGGCCGTTCGTTATAACTAGTTGCGTTCCTAGCCGCTATAATTGTCTCTTTGCCGACTAATGAGAACAACCACACCATAGCGATTTGACGCGGCGCCTCGGAATACCGTTTCAGCAGGCGCTTGGTAAGGCCATCGCGAATACCAGGTATCGTGTAAGTAGCGTAGGCCCGCACGCAAGATAAACTGCTAGGGAACCGCGTTTCCACGACCGGTGCACGATTTAATTTCGCCGACGTGATGACATTCCAGGCAGTGCCTCTGCCGCCGGACCCCTCTCGTGATTGGGTAGCTGGACATGCCCTTGTAAGATATAACAAGAGCCTGCCTGTCTAATGATCTCACGGCGAAAGTCGGGGAGACAGCAGCGGCTGCAGACATTATACCGCAACAACACTAAGGTGAGATAACTCCGTAATTGACTACGCGTTCCTCTAGACCTTACTTGACCGGATACAGTGTCTTTGACACGTTTATGGGTTACAGCAATCACATCCAAGACTGGCTATGCACGAAGCAACTCTTGAGTGTTAAAATGTTGACCCCTGTATTTGGGATGCGGGTAGTAGATGAGTGCAGGGACTCCGAGGTCAAGTACATTACCCTCTCATAGGGGGCGTTCTAGATCACGTTACCACCATATCATTCGAGCATGACACCATCTCCGCTGTGCCCATCCTAGTAGTCATTATTCCTATCACGCTTTCGAGTGTCTGGTGGCGGATATCCCCCACGAATGAAAATGTTTTTCGCTGACAGTCATATTGGGGTGCTCCTAAGCTTTTCCACTTGGCTGGGTCAGCTAGGCCTCCGTGCCCGGAGTTTCGGCGCAGTGCTGCCGACAGCCGGCCATTGTCTTTGGGGCCTCATTCGAGGGTACCCGGACCTATCTTGTCGGGACCACCCGGGGTAGTCGTTGGGCTTATGCACCGAAAAGCCCTGCGCCGGCCTCCCCGCTACGGAAGGTGATAAGCTCCGGCAAGCAATTATGAACAACGCAAGGATCGCGGATATAAACAGAGAAACGGCTGATTACACCTGTTCGTGTGGTATCGGTAAATAGCCTCGCGGAGCCTTATGCCATACTCGTCCGCGGAGCACTCTGGTAATGCATATGGTCCACAGGACATTCGTCGCTTCCGGGTATGCGCTCTATTTGACGGTCCTTTGGCGCACAGATGCTGGCCACCATTTAAATTAGAGCGACTCCACATCTGTAAGGTCCGCCACGCAGACGACAGCCCAGGGAGACCACTGACCGATCTACCTGAACGGCAACCTTCTGTATCGTACTGGGGCGGAGAGATAACTACAGTGCCGCTTACAGCCCCTCTGTCGTCGCCGACGTCTGTAGTCTAGCCTCATTATGAT", |
| "range_at_start": "ATGCATGATGCTACGTACGATCGTAGCTGCATGCTAGCGATCGTAGCTAGCTGACTGATCGTAGGGTACGACTGTAGCTCAGTCGATCTGAAAAAAAAAA", |
| "range_at_end": "ATGCATGATGCTACGTACGATCGTAGCTGCATGCTAGCGATCGTAGCTAGCTGACTGATCGTAGGGTACGACTGTAGCTCAGTCGATCTGAAAAAAAAAA", |
| "full_range": "ATGCATGATGCTACGTACGATCGTAGCTGCATGCTAGCGATCGTAGCTAGCTGACTGATCGTAGGGTACGACTGTAGCTCAGTCGATCTGAAAAAAAAAA", |
| "empty_range": "ATGCATGATGCTACGTACGATCGTAGCTGCATGCTAGCGATCGTAGCTAGCTGACTGATCGTAGGGTACGACTGTAGCTCAGTCGATCTGAAAAAAAAAA" |
| }, |
| "prediction_ranges": { |
| "short_seq": [0, 2], |
| "boundary_1000": [100, 900], |
| "long_seq": [300, 2999], |
| "range_at_start": [0, 10], |
| "range_at_end": [89, 99], |
| "full_range": [0, 99], |
| "empty_range": [] |
| } |
| } |
