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Oregon Centennial Tokens were a type of trade token (also known as a "So-Called Dollar") issued during the 1959 Oregon Centennial. Many localities sold them as a fundraiser to finance their Centennial celebrations.
Design
The Northwest Specialty Sales Co | https://huggingface.co/datasets/fmars/wiki_stem |
In numismatics, an overstrike describes a situation in which an existing coin rather than a blank is struck with a new design. This practice is now obsolete and generally occurred for two purposes. Overstriking was sometimes done for technical reasons when a first strike is unsatisfactory, or accidentally if the blank slips out of place or if the dies judder, resulting in a slight doubling of the design | https://huggingface.co/datasets/fmars/wiki_stem |
Palladium coins are a form of coinage made out of the rare silver-white transition metal palladium. Palladium is assigned the code XPD by ISO 4217. The first palladium coins were produced in 1966 | https://huggingface.co/datasets/fmars/wiki_stem |
The quadrigatus was a medium-sized silver coin produced by the Roman Republic during the 3rd century BC. The obverse featured a young janiform bust and the reverse featured Victory driving a quadriga (four-horse chariot), giving the coin its Roman name, with the inscription "ROMA" below.
The coin weighed about 6 | https://huggingface.co/datasets/fmars/wiki_stem |
The quarter florin or helm was an attempt by English King Edward III to produce a gold coinage suitable for use in Europe as well as in England (see also double leopard and leopard). The Helm, based on contemporary European gold coins had a value of one shilling and sixpence. However, the gold used to strike the coins was overvalued, resulting in the coins being unacceptable to the public, and the coins were withdrawn after only seven months in circulation, and eventually demonetised in August 1344, to be melted down to produce the more popular gold Noble | https://huggingface.co/datasets/fmars/wiki_stem |
The quincunx was a bronze coin minted during the Roman Republic. It was not part of the standard coinage of the Roman monetary system. The quincunx was produced only during the Second Punic War (218 to 204 BC), by mints at Luceria (mod | https://huggingface.co/datasets/fmars/wiki_stem |
The post-reform radiate (the Latin name, like many Roman coins of this time, is unknown), was a Roman coin first issued by Diocletian during his currency reforms. The radiate looked very similar to the antoninianus (pre-reform radiate), with a radiate crown, similar to the one worn by the Roman deity, Sol Invictus. It is different from the Antoninianus because of the absence of the "XXI" that existed on pre-reform radiates, a symbol believed to have indicated a consistence of 20 parts bronze to 1 part silver | https://huggingface.co/datasets/fmars/wiki_stem |
The rim of a coin is the raised part of the coin that completely encircles the perimeter on both obverse and reverse sides. Not to be confused with the edge of the coin, which is also known as its "third side". This is the part which exceeds the area of the die which strikes the coin during production, and as a result is pushed upward and sharpened to form a sort of border around the coin's design | https://huggingface.co/datasets/fmars/wiki_stem |
The Scharfrichterpfennig ("Executioner's Penny") was a silver medal weighing a double thaler, which the incumbent executioner presented to the oldest judge of the city of Hamburg when he retired from the court. For the period between 1540 and 1810, a Scharfrichterpfennig was minted and presented annually. Some of the surviving specimens are in the Museum of Hamburg History | https://huggingface.co/datasets/fmars/wiki_stem |
Scrupulum, meaning a tiny stone (from scrupus sharp stone), indicates a weight of 1⁄24 of a Roman ounce (i. e. ) or, by extension, of other measures | https://huggingface.co/datasets/fmars/wiki_stem |
The semis, literally meaning half, was a small Roman bronze coin that was valued at half an as. During the Roman Republic, the semis was distinguished by an 'S' (indicating semis) or 6 dots (indicating a theoretical weight of 6 unciae). Some of the coins featured a bust of Saturn on the obverse, and the prow of a ship on the reverse | https://huggingface.co/datasets/fmars/wiki_stem |
Shivrai was a copper coin minted during the rule of Marathas and remained in circulation till the end of the 19th century, primarily in the Bombay Presidency region. Before 1830s, shivrai was valued at 1/74 to 1/80 of a rupee. There are 150 different types of shivrai extant to date | https://huggingface.co/datasets/fmars/wiki_stem |
The tornesel, tornesol, or tornese was a silver coin of Europe in the Late Middle Ages and the early modern era. It took its name from the denier tournois, the denier of Tours. Marco Polo referred to the tornesel in recounts of his travels to East Asia when describing the currencies of the Yuan Empire | https://huggingface.co/datasets/fmars/wiki_stem |
The triens (plural trientes) was an Ancient Roman bronze coin produced during the Roman Republic valued at one-third of an as (4 unciae). The most common design for the triens featured the bust of Minerva and four pellets (indicating four unciae) on the obverse and the prow of a galley on the reverse. It was not a common denomination and was last struck c | https://huggingface.co/datasets/fmars/wiki_stem |
The victoriatus was a silver coin issued during the Roman Republic from about 221 BC to 170 BC. The obverse of the coin featured the bust of Jupiter and the reverse featured Victory placing a wreath upon a trophy with the inscription "ROMA" in exergue. The name victoriatus is an ancient term, attested by several contemporary texts and inscriptions | https://huggingface.co/datasets/fmars/wiki_stem |
The Weckeler, also called a Weckelerpfennig, is a one-sided silver Palatine pfennig coin of the 14th and 15th century, which was also called the Wegkpfennig in the local dialect. It occurs both as a Schüsselpfennig and as a non-domed, planar coin. The pfennigs were given their contemporary name after their image, a lozenged coat of arms | https://huggingface.co/datasets/fmars/wiki_stem |
A complementary currency is a currency or medium of exchange that is not necessarily a national currency, but that is thought of as supplementing or complementing national currencies. : 3 : 2 Complementary currencies are usually not legal tender and their use is based on agreement between the parties exchanging the currency. According to Jérôme Blanc of Laboratoire d'Économie de la Firme et des Institutions, complementary currencies aim to protect, stimulate or orientate the economy | https://huggingface.co/datasets/fmars/wiki_stem |
Algorand is a cryptocurrency protocol providing proof-of-stake on a blockchain. Algorand's native cryptocurrency is called ALGO.
History
Algorand was founded in 2017 by Silvio Micali, a professor at MIT | https://huggingface.co/datasets/fmars/wiki_stem |
ANCAP is an alternative currency system that uses ammonium nitrate, copper, aluminium and plywood as the units of exchange. The system was first proposed in 1982 by the economist Robert Hall. ANCAP is an example of a commodity standard | https://huggingface.co/datasets/fmars/wiki_stem |
Breadcoin is a community food token created in 2016 to help address the food needs of disadvantaged populations. The token is issued by the Breadcoin Foundation, Ltd. , a 501(c)3 nonprofit registered in Washington DC | https://huggingface.co/datasets/fmars/wiki_stem |
Cardano is a public blockchain platform. It is open-source and decentralized, with consensus achieved using proof of stake. It can facilitate peer-to-peer transactions with its internal cryptocurrency, ADA | https://huggingface.co/datasets/fmars/wiki_stem |
The Future of Money: Beyond Greed and Scarcity is a book written by Bernard Lietaer, published by Random House in 2001, and currently out of print. It was written as an overview of how money and the financial system works, the effects of modern money paradigms, especially relating to debt and interest, and how it can work to everyone's benefit to solve a wide range of problems, especially with the use of complementary currencies. The book is meant to be written for the layperson, while bringing light to subjects that only relatively few are aware of at all levels of society | https://huggingface.co/datasets/fmars/wiki_stem |
Labour vouchers (also known as labour cheques, labour notes, labour certificates and personal credit) are a device proposed to govern demand for goods in some models of socialism and to replace some of the tasks performed by currency under capitalism.
Outline
Unlike money, vouchers cannot circulate and are not transferable between people. They are also not exchangeable for any means of production, hence they are not transmutable into capital | https://huggingface.co/datasets/fmars/wiki_stem |
"Mutual credit" (sometimes called "multilateral barter" or "credit clearing") is a term mostly used in the field of complementary currencies to describe a common, usually small-scale, endogenous money system.
The term implies that creditors and debtors are the same people lending to each other, but there are several nuances. Some think of mutual credit as a type of currency but this can be problematic because no currency or money is 'issued' in the sense that most people would understand it | https://huggingface.co/datasets/fmars/wiki_stem |
Nervos Network is an open-source blockchain platform. It consists of multiple blockchain layers that are designed for different functions. The foundational layer is known as the Common Knowledge Base, whilst the native cryptocurrency of this layer is called CKB | https://huggingface.co/datasets/fmars/wiki_stem |
Nodle is an enterprise common good blockchain, part of the Polkadot Parachain Network. Nodle is a Decentralized Physical Infrastructure Network (DePIN) launched in 2017. Nodle uses smartphones with bluetooth to create basic Mesh Networks for connecting Bluetooth enabled IoT devices | https://huggingface.co/datasets/fmars/wiki_stem |
Pi Network is a social cryptocurrency and a platform for developers, enabling mobile device users to mine Pi coins without causing battery depletion or environmental damage. This innovation emerged from the collaboration of Stanford University alumni, notably Nicolas Kokkalis, Chengdiao Fan, and Vincent McPhillip. Pi Network aspires to construct the most comprehensive peer-to-peer ecosystem and digital interaction realm, powered by Pi, the most extensively dispersed cryptocurrency worldwide | https://huggingface.co/datasets/fmars/wiki_stem |
Polkadot is a blockchain platform and cryptocurrency. The native cryptocurrency for the Polkadot blockchain is the DOT. It is designed to allow blockchains to exchange messages and perform transactions with each other without a trusted third-party | https://huggingface.co/datasets/fmars/wiki_stem |
Terra (the Trade Reference Currency, TRC) is the name of a proposed "world currency". The concept was revived by Belgian economist and expert on monetary systems Bernard Lietaer in 2001, based on a similar proposal from the 1930s.
The currency is meant to be based on a basket of the nine to twelve most important commodities (according to their importance in worldwide trade) | https://huggingface.co/datasets/fmars/wiki_stem |
Plectocomia pierreana is a species of liana in the Arecaceae, or palm tree, family. It is a spiny climber, with either a single stem or a cluster of stems up to 35 m in length, stems are 1 to 9 cm in diameter. Its spines are up to 2 cm long | https://huggingface.co/datasets/fmars/wiki_stem |
Cymodocea nodosa is a species of seagrass in the family Cymodoceaceae and is sometimes known as little Neptune grass. As a seagrass, it is restricted to growing underwater and is found in shallow parts of the Mediterranean Sea and certain adjoining areas of the Atlantic Ocean.
Description
C | https://huggingface.co/datasets/fmars/wiki_stem |
The wildlife of the Republic of the Congo is a mix of species of different kinds of organisms. There are 400 mammal species, 1,000 bird species and 10,000 plant species (3,000 of which are unique to the Republic of Congo) in the country. Many parts of the country are covered in tropical rainforest, although some of the southern areas have been cleared by logging | https://huggingface.co/datasets/fmars/wiki_stem |
Pleurotus nebrodensis, commonly known as funcia di basilicu "fungus of basilisk" or carduncieddu di macchia "macchia carduncieddu(?)", is a fungus that was declared by the IUCN as critically endangered in 2006. This fungus only grows on limestone in northern Sicily in association with Cachrys ferulacea (family Apiaceae). The characteristics of the mushroom are its creamy white to yellow colour, its diameter of between 5 and 20 centimeters (2 and 8 in), its extremely angled gills, and the breaking apart of the cap surface at maturity | https://huggingface.co/datasets/fmars/wiki_stem |
The Maltese Islands, although small in area (316 km2), host many endemic species. This may make the organism endangered. These endemic species are important to the Maltese Islands because they form part of Maltese national heritage and are topics of scientific research | https://huggingface.co/datasets/fmars/wiki_stem |
Synapta maculata, the snake sea cucumber, is a species of sea cucumber in the family Synaptidae. It is found in shallow waters in the tropical Indo-Pacific Ocean. Sometimes growing as long as 3 m (10 ft), it is one of the longest sea cucumbers in the world | https://huggingface.co/datasets/fmars/wiki_stem |
The wildlife of Myanmar includes its flora and fauna and their natural habitats.
Flora
Like all Southeastern Asian forests, the forests of Myanmar can be divided into two categories: monsoon forest and rainforest. Monsoon forest is dry at least three months a year, and is dominated by deciduous trees | https://huggingface.co/datasets/fmars/wiki_stem |
Ys II: Ancient Ys Vanished – The Final Chapter is a 1988 action role-playing game developed by Nihon Falcom. It is a sequel to Ys I: Ancient Ys Vanished and takes place immediately following it. The game first released for the PC-8801 and PC-9801 and has seen several ports and remakes since | https://huggingface.co/datasets/fmars/wiki_stem |
Zybex is a 1988 horizontally-scrolling shooter for the Commodore 64, Atari 8-bit family, and ZX Spectrum. Zybex was one of the first games released by Zeppelin Games, a UK-based budget game developer.
Plot
The player takes the role of two convicts, Rinser and Cassalana, escaping from an execution in intergalactic prison | https://huggingface.co/datasets/fmars/wiki_stem |
Avalon: The Legend Lives is a text-based online multi-player role-playing game world that was first released on 28 October 1989 at the gaming convention Adventure 89. It has maintained a continuous on-line presence with consistent and intact persona files and player history since the late 1980s, rendering it the longest continuously running on-line role-playing game in history. While it follows closely in the tradition of many early multi-user dungeons, Avalon offered many features that have since become signature components of the role-playing game genre: Real economies, distinct ecosystems and weather effects, Gods with followers and priests, player housing and autonomous governments, and skill-based real time player vs player (PvP) combat, and a warfare system | https://huggingface.co/datasets/fmars/wiki_stem |
Bride of the Robot is a 1989 erotic text adventure game developed and self-published by Free Spirit Software and released for the Amiga and Atari ST. The Amiga version of Bride of the Robot was published in Europe in June 1989 by CSJ Computersoft. Bride of the Robot is the third entry in the Brad Stallion series, and is preceded by Sex Vixens from Space (1989) and Planet of Lust (1989), and succeeded by Sex Olympics (1991) | https://huggingface.co/datasets/fmars/wiki_stem |
The Ciona intestinalis protein database (CIPRO) is a protein database for the tunicate species C. intestinalis.
See also
Ciona intestinalis
References
External links
http://cipro | https://huggingface.co/datasets/fmars/wiki_stem |
The compendium of protein lysine acetylation (CPLA) database contains the sites of experimentally identified lysine acetylation sites.
References
External links
https://web. archive | https://huggingface.co/datasets/fmars/wiki_stem |
The conformational dynamics data bank (CDDB) is a database about conformational dynamics of heavy proteins and protein assemblies. The CDDB is useful when used alongside static structural data to aid research into protein function. It is also helpful in identifying protein assemblies that are essential to cell function | https://huggingface.co/datasets/fmars/wiki_stem |
ConoServer is a database of toxins that are expressed by the predatory sea snails in the family Conidae, the cone snails. These toxins are known as conotoxins or conopeptides. The toxins are of importance to medical research | https://huggingface.co/datasets/fmars/wiki_stem |
DAnCER (disease-annotated chromatin epigenetics resource) is a database for chromatin modifications and their relation to human disease. It was developed by the Wodak Lab at the Hospital for Sick Children.
It has been developed to serve as the core bioinformatics resource for seven experimental and bioinformatics laboratories working together to unravel the mechanisms of chromatin modifications and their relation to human disease | https://huggingface.co/datasets/fmars/wiki_stem |
The Database for Bacterial Group II Introns is a repository of full-length, non-redundant group II introns present in bacterial DNA sequence. The database is first established in 2002 with roughly 40 introns. In less than 10 years, the database has expanded to 400 introns | https://huggingface.co/datasets/fmars/wiki_stem |
The Database of protein conformational diversity (PCDB) is a database of diversity of protein tertiary structures within protein domains as determined by X-ray crystallography. Proteins are inherently flexible and this database collects information on this subject for use in molecular research. It uses the CATH database as a source of structures for each protein and reports the range of differences in the structures based on their superposition and reports a maximum RMSD | https://huggingface.co/datasets/fmars/wiki_stem |
DBTSS, the DataBase of Transcriptional Start Sites, is a database hosted by the Human Genome Center at the University of Tokyo. It contains the exact positions of transcriptional start sites in the genomes of various organisms.
See also
Transcription
References
External links
http://dbtss | https://huggingface.co/datasets/fmars/wiki_stem |
ECgene in computational biology is a database of genomic annotations taking alternative splicing events into consideration.
See also
Alternative splicing
Alternative Splicing Annotation Project
AspicDB
ChimerDB
TassDB
References
External links
https://web. archive | https://huggingface.co/datasets/fmars/wiki_stem |
In bioinformatics EcoCyc is a biological database for the bacterium Escherichia coli K-12. The EcoCyc project performs literature-based curation of the E. coli genome, and of E | https://huggingface.co/datasets/fmars/wiki_stem |
EDAS was a database of alternatively spliced human genes. It doesn't seem to exist anymore.
See also
AspicDB database
References
External links
http://www | https://huggingface.co/datasets/fmars/wiki_stem |
The eggNOG database is a database of biological information hosted by the EMBL. It is based on the original idea of COGs (clusters of orthologous groups) and expands that idea to non-supervised orthologous groups constructed from numerous organisms. The database was created in 2007 and updated to version 4 | https://huggingface.co/datasets/fmars/wiki_stem |
ExoCarta is a manually curated database of exosomal proteins, RNA and lipids. Exosomes are cell-derived vesicles that are present in many and perhaps all biological fluids, including blood, urine, and cultured medium of cell cultures. The reported diameter of exosomes is between 30 and 100 nm, which is larger than LDL, but much smaller than for example, red blood cells | https://huggingface.co/datasets/fmars/wiki_stem |
FARME also known as Functional Antibiotic Resistance Metagenomic Element is a database that compiles publicly available DNA elements and predicted proteins that confer antibiotic resistance, regulatory elements and mobile genetic elements. It is the first database to focus on functional metagenomics. This allows the database to understand 99% of bacteria which cannot be cultured, the relationship between environmental antibiotic resistance sequences and antibiotic genes derived from cultured isolates | https://huggingface.co/datasets/fmars/wiki_stem |
FREP is a database of mouse repeat sequences derived from cDNAs
See also
Repeated sequence (DNA)
References
External links
https://web. archive. org/web/20080430084627/http://facts | https://huggingface.co/datasets/fmars/wiki_stem |
Genetic codes is a simple ASN. 1 database hosted by the National Center for Biotechnology Information and listing all the known Genetic codes.
See also
Genetic code
References
External links
https://www | https://huggingface.co/datasets/fmars/wiki_stem |
The Group I Intron Sequence and Structure Database (GISSD) is a database of Group I catalytic intron.
See also
Group I catalytic intron
References
External links
http://www. rna | https://huggingface.co/datasets/fmars/wiki_stem |
The GWAS catalog is a free online database that compiles data of genome-wide association studies (GWAS), summarizing unstructured data from different literature sources into accessible high quality data. It was created by the National Human Genome Research Institute (NHGRI) in 2008 and have become a collaborative project between the NHGRI and the European Bioinformatics Institute (EBI) since 2010. As of September 2018, it has included 71,673 SNP–trait associations in 3,567 publications | https://huggingface.co/datasets/fmars/wiki_stem |
The Human-transcriptome DataBase for Alternative Splicing (H-DBAS) is a database of alternatively spliced human transcripts based on H-Invitational.
See also
Alternative splicing
References
External links
https://web. archive | https://huggingface.co/datasets/fmars/wiki_stem |
IGRhCellID is a database of cell lines using some common tools to reduce cell lines misidentification.
See also
Cell line
References
External links
http://igrcid. ibms | https://huggingface.co/datasets/fmars/wiki_stem |
Integrall is a database that seeks to document and annotate integrons and all other transposable elements that confer resistance to antibiotics in bacteria. As of release 1. 2, Integrall contains ~4800 integron sequences | https://huggingface.co/datasets/fmars/wiki_stem |
The Intronerator is a database of alternatively spliced genes and a database of introns for Caenorhabditis elegans.
See also
Alternative splicing
AspicDB
EDAS
Hollywood (database)
List of biological databases
References
External links
A working copy of the Intronerator no longer exists as of 2003.
Equivalent functions can be performed with the U | https://huggingface.co/datasets/fmars/wiki_stem |
IsoBase is a database identifying functionally related proteins integrating sequence data and protein–protein interaction networks.
See also
Protein–protein interaction
Homology (biology)
References
External links
http://isobase. csail | https://huggingface.co/datasets/fmars/wiki_stem |
JASPAR is an open access and widely used database of manually curated, non-redundant transcription factor (TF) binding profiles stored as position frequency matrices (PFM) and transcription factor flexible models (TFFM) for TFs from species in six taxonomic groups. From the supplied PFMs, users may generate position-specific weight matrices (PWM). The JASPAR database was introduced in 2004 | https://huggingface.co/datasets/fmars/wiki_stem |
LacED, also known as The Lactamase Engineering Database, is a database that identifies and corrects inconsistencies in already existing databases, namely Beta-lactamases. It integrates such information as mutations, sequence alignments, and structures in order to accomplish the task. As of the publication of the primary literature, LacED provides 2399 sequences entries and 37 structure entries | https://huggingface.co/datasets/fmars/wiki_stem |
LocDB is an expert-curated database that collects experimental annotations for the subcellular localization of proteins in Homo sapiens (human) and Arabidopsis thaliana (Weed). The database also contains predictions of subcellular localization from a variety of state-of-the-art prediction methods for all proteins with experimental information.
Proteins are the fundamental functional components of cells | https://huggingface.co/datasets/fmars/wiki_stem |
The Mammalian Promoter Database (MPromDb) is a curated database of gene promoters identified from ChIP-seq. The proximal promoter region (upstream of the core-promoter region) contains the cis-regulatory elements of most of the transcription factors (TFs). Recently, a better approach to annotate active promoters has been demonstrated with a combination of ChIP-seq and computational technique | https://huggingface.co/datasets/fmars/wiki_stem |
MimoDB is a database of peptides that have been selected from random peptide libraries based on their ability to bind small compounds, nucleic acids, proteins, cells, and tissues through phage display.
See also
Mimotope
Phage display
References
External links
https://web. archive | https://huggingface.co/datasets/fmars/wiki_stem |
MIPModDB is a database of comparative protein structure models of MIP (Major intrinsic proteins) family of proteins.
See also
Major intrinsic proteins
References
External links
http://bioinfo. iitk | https://huggingface.co/datasets/fmars/wiki_stem |
In bioinformatics, miRBase is a biological database that acts as an archive of microRNA sequences and annotations. As of September 2010 it contained information about 15,172 microRNAs. This number has risen to 38,589 by March 2018 | https://huggingface.co/datasets/fmars/wiki_stem |
MiRGator is a database for the functional annotation of miRNAs.
See also
MiRNA
Gene silencing
References
External links
https://www. webcitation | https://huggingface.co/datasets/fmars/wiki_stem |
ModBase is a database of annotated comparative protein structure models, containing models for more than 3. 8 million unique protein sequences. Models are created by the comparative modeling pipeline ModPipe which relies on the MODELLER program | https://huggingface.co/datasets/fmars/wiki_stem |
The Molecular Modeling Database (MMDB) is a database of experimentally determined three-dimensional biomolecular structures and hosted by the National Center for Biotechnology Information.
See also
Protein structure
References
External links
https://www. ncbi | https://huggingface.co/datasets/fmars/wiki_stem |
MUBII-TB-DB is a database that focuses on tuberculosis antibiotic resistance genes. It is a highly structured, text-based database focusing on Mycobacterium tuberculosis at seven different mutation loci: rpoB, pncA, katG; mabA(fabG1)-inhA, gyrA, gyrB, and rrs. MUBII analyzes the query using two parallel strategies: 1) | https://huggingface.co/datasets/fmars/wiki_stem |
Nucleosome Positioning Region Database (NPRD) is a database of nucleosome formation sites (NFSs).
See also
References
External links
http://srs6. bionet | https://huggingface.co/datasets/fmars/wiki_stem |
OMPdb is a dedicated database that contains beta barrel (β-barrel) outer membrane proteins from Gram-negative bacteria. Such proteins are responsible for a broad range of important functions, like passive nutrient uptake, active transport of large molecules, protein secretion, as well as adhesion to host cells, through which bacteria expose their virulence activity.
Their biological importance together with the inadequate annotation and classification found in public databases, urges the need for intensive studies and accurate data collection regarding β-barrel proteins | https://huggingface.co/datasets/fmars/wiki_stem |
OriDB is a biological database of confirmed and predicted DNA replication origin sites in the model organisms Saccharomyces cerevisiae and Schizosaccharomyces pombe. The DNA Replication Origin Database (OriDB) provides access to collated published datasets that have predicted and/or confirmed the location of replication origins. Each potential replication origin site is listed as confirmed, likely or dubious dependent upon the level of supporting data | https://huggingface.co/datasets/fmars/wiki_stem |
OMA (Orthologous MAtrix) is a database of orthologs extracted from available complete genomes. The orthology predictions of OMA are available in several forms:
OMA Pairs: for a given gene, a list of predicted orthologs in other species is provided.
OMA Groups: a set of genes across different species which are all orthologous | https://huggingface.co/datasets/fmars/wiki_stem |
The Pan-European Species-directories Infrastructure (PESI) provides a mechanism to deliver an integrated, annotated checklist of the species occurring in Europe, aiming to cover the Western Palearctic biogeographic region. PESI integrates the efforts of five community networks, Euro+Med PlantBase (E+M); Fauna Europaea (FaEu); the European Register of Marine Species (ERMS), and Species Fungorum Europe (SF-EU), into a single European checklist. The PESI checklist (also called EU-nomen) serves as a taxonomic standard and backbone for Europe | https://huggingface.co/datasets/fmars/wiki_stem |
PathoPhenoDB is a biological database. The database connects pathogens to their phenotypes using multiple databases such as NCBI, Human Disease Ontology Human Phenotype Ontology, Mammalian Phenotype Ontology, PubChem, SIDER and CARD. Pathogen-disease associations were gathered mainly through the CDC and the List of Infectious Diseases page on Wikipedia | https://huggingface.co/datasets/fmars/wiki_stem |
Patome is a database of biological sequence data of issued patents and/or published applications.
See also
Patents
Gene patent
References
External links
https://web. archive | https://huggingface.co/datasets/fmars/wiki_stem |
PeroxiRedoxin classification indEX (PREX) is a database of peroxiredoxins (Prxs) classified into one of six distinct subfamilies. Classification relies on the Deacon Active Site Profiling (DASP) approach that utilizes a position specific scoring matrix (PSSM) created from aligned signatures (built from sequence fragments surrounding active sites of structurally-characterized Prx group members) to search sequence databases. Searches of PREX for Prxs of interest can be conducted using protein annotation, accession number, PDB ID, organism name, or protein sequence (using BLAST) for Prx proteins extracted from January 2008, November 2010, or October 2011 versions of GenBank (over 8000 validated Prx sequences represented) | https://huggingface.co/datasets/fmars/wiki_stem |
PhEVER is a database of homologous gene families between viral sequences and sequences from cellular organisms.
See also
Phylogenetics
References
External links
https://web. archive | https://huggingface.co/datasets/fmars/wiki_stem |
Phospho. ELM is a database storing the phosphorylation data extracted from the literature and the analyses.
References
External links
http://phospho | https://huggingface.co/datasets/fmars/wiki_stem |
Phospho3D is a database of 3D structures of phosphorylation sites derived from Phospho. ELM.
See also
Phospho | https://huggingface.co/datasets/fmars/wiki_stem |
PolyQ is a biological database of polyglutamine repeats in disease and non-disease associated proteins.
See also
Trinucleotide repeat disorder
References
External links
http://pxgrid. med | https://huggingface.co/datasets/fmars/wiki_stem |
ProSAS is a database describing the effects of splicing on the structure of a protein
See also
Alternative splicing
Protein structure
References
External links
http://www. bio. ifi | https://huggingface.co/datasets/fmars/wiki_stem |
The Protein Circular Dichroism Data Bank (PCDDB) is a database of circular dichroism and synchrotron radiation.
See also
Circular dichroism
Synchrotron radiation
References
External links
http://pcddb. cryst | https://huggingface.co/datasets/fmars/wiki_stem |
The Protein–RNA Interface Database (PRIDB) is a database of protein–RNA interfaces extracted from the Protein Data Bank.
See also
RNA-binding protein
Protein Data Bank
References
External links
http://bindr. gdcb | https://huggingface.co/datasets/fmars/wiki_stem |
RAC otherwise known as Repository of Antibiotic resistance Cassettes is a database that uses the automatic Attacca annotation system in order to comprehensively annotate gene-cassettes and transposable elements in a stream-lined manner and to discover novel gene cassettes. Antibiotic resistance is often due to horizontal gene transfer, which allows resistance to arise through cell-to-cell interaction. This poses a major challenge in the field of antibiotic resistance | https://huggingface.co/datasets/fmars/wiki_stem |
In molecular biology, REBASE is a database of information about restriction enzymes and DNA methyltransferases. REBASE contains an extensive set of references, sites of recognition and cleavage, sequences and structures. It also contains information on the commercial availability of each enzyme | https://huggingface.co/datasets/fmars/wiki_stem |
RepTar is a repository of cellular targets of host and viral miRNAs.
See also
MiRTarBase
MESAdb
PmiRKB
microRNA
References
External links
http://reptar. ekmd | https://huggingface.co/datasets/fmars/wiki_stem |
ResFinder is a database that captures antimicrobial resistance genes from whole-genome data sets. The database uses BLAST in order to accomplish this. The database allows inputs of full sequences, partial sequences, or short sequence reads from other sequencing platforms | https://huggingface.co/datasets/fmars/wiki_stem |
The RNA helicase database stores data (sequence, structures. . | https://huggingface.co/datasets/fmars/wiki_stem |
RNA Modification Base (RMBase) is designed for decoding the landscape of RNA modifications identified from high-throughput sequencing data (MeRIP-seq, m6A-seq, miCLIP, m6A-CLIP, Pseudo-seq, Ψ-seq, CeU-seq, Aza-IP, RiboMeth-seq). It contains ~124200 N6-Methyladenosines (m6A), ~9500 pseudouridine (Ψ) modifications, ~1000 5-methylcytosine (m5C) modifications, ~1210 2′-O-methylations (2′-O-Me) and ~3130 other types of RNA modifications. RMBase demonstrated thousands of RNA modifications located within mRNAs, regulatory ncRNAs (e | https://huggingface.co/datasets/fmars/wiki_stem |
SCRIPDB is a database of chemical structures associated to patents.
References
External links
http://dcv. uhnres | https://huggingface.co/datasets/fmars/wiki_stem |
SpliceInfo is a database for the four major alternative-splicing modes (exon skipping, 5'-alternative splicing, 3'-alternative splicing and intron retention) in the human genome.
See also
Alternative splicing
EDAS
AspicDB
Hollywood (database)
References
External links
http://SpliceInfo. mbc | https://huggingface.co/datasets/fmars/wiki_stem |
StarBase is a database for decoding miRNA-mRNA, miRNA-lncRNA, miRNA-sncRNA, miRNA-circRNA, miRNA-pseudogene, protein-lncRNA, protein-ncRNA, protein-mRNA interactions, and ceRNA networks from CLIP-Seq (HITS-CLIP, PAR-CLIP, iCLIP, CLASH) and degradome sequencing data. StarBase provides miRFunction and ceRNAFunction web tools to predict the function of ncRNAs (miRNAs, lncRNAs, pseudogenes) and protein-coding genes from the miRNA and ceRNA regulatory networks. StarBase also developed Pan-Cancer Analysis Platform to decipher Pan-Cancer Analysis Networks of lncRNAs, miRNAs, ceRNAs, and RNA-binding proteins (RBPs) by mining clinical and expression profiles of 14 cancer types (including more than six thousand samples) from The Cancer Genome Atlas (TCGA) Data Portal | https://huggingface.co/datasets/fmars/wiki_stem |
TassDB (TAndem Splice Site DataBase) is a database of tandem splice sites of eight species
See also
Alternative splicing
References
External links
https://archive. today/20070106023527/http://helios. informatik | https://huggingface.co/datasets/fmars/wiki_stem |
The TIGR plant repeat database is a repository of repetitive sequences in plants.
See also
repetitive sequences
TIGR plant transcript assembly database
References
External links
http://plantrepeats. plantbiology | https://huggingface.co/datasets/fmars/wiki_stem |
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