primary_knowledge_sources listlengths 1 16 | subject stringlengths 5 98 | predicate stringclasses 91
values | object stringlengths 5 106 | qualified_predicate stringclasses 2
values | subject_aspect_qualifier stringclasses 2
values | subject_direction_qualifier stringclasses 0
values | subject_part_qualifier stringclasses 15
values | object_aspect_qualifier stringclasses 17
values | object_direction_qualifier stringclasses 6
values | object_specialization_qualifier stringclasses 2
values | object_part_qualifier stringclasses 7
values | species_context_qualifier stringclasses 27
values | disease_context_qualifier stringlengths 11 15 ⌀ | frequency_qualifier stringclasses 5
values | qualifiers stringlengths 11 923 ⌀ | stage_qualifier stringclasses 99
values | anatomical_context_qualifier stringclasses 615
values | onset_qualifier stringclasses 17
values | sex_qualifier stringclasses 2
values | knowledge_level stringclasses 5
values | agent_type stringclasses 6
values | primary_knowledge_source stringclasses 95
values | aggregator_knowledge_source listlengths 1 1 ⌀ | publications listlengths 1 1.33k ⌀ | upstream_data_source listlengths 1 1 | num_references int32 1 1.33k ⌀ | num_sentences int32 | has_confidence_score float32 150 999 ⌀ | extraction_confidence_score float32 0.14 1.51 ⌀ | affinity float32 -5 18 ⌀ | affinity_parameter stringclasses 26
values | supporting_study_method_type stringlengths 7 71 ⌀ |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
[
"infores:primekg"
] | MONDO:0012334 | biolink:has_phenotype | HP:0002808 | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | knowledge_assertion | not_provided | infores:primekg | null | null | [
"primekg"
] | null | null | null | null | null | null | null |
[
"infores:semmeddb"
] | CHEBI:24043 | biolink:interacts_with | CHEBI:7602 | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | prediction | text_mining_agent | infores:semmeddb | [
"infores:rtx-kg2"
] | [
"PMID:18541144",
"PMID:20533991",
"PMID:21243163"
] | [
"rtxkg2"
] | 3 | null | null | null | null | null | null |
[
"infores:drugbank"
] | UNII:97IQ273H4L | biolink:interacts_with | CHEBI:10023 | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | knowledge_assertion | manual_agent | infores:drugbank | [
"infores:rtx-kg2"
] | null | [
"rtxkg2"
] | null | null | null | null | null | null | null |
[
"infores:semmeddb"
] | NCBIGene:2701 | biolink:disrupts | UMLS:C2936381 | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | prediction | text_mining_agent | infores:semmeddb | [
"infores:rtx-kg2"
] | [
"PMID:32968622"
] | [
"rtxkg2"
] | 1 | null | null | null | null | null | null |
[
"infores:pathwhiz"
] | PathWhiz.Reaction:107856 | biolink:has_participant | UMLS:C0054788 | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | prediction | automated_agent | infores:pathwhiz | [
"infores:rtx-kg2"
] | null | [
"rtxkg2"
] | null | null | null | null | null | null | null |
[
"infores:pathwhiz"
] | SMPDB:SMP0057767 | biolink:occurs_in | GO:0005794 | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | prediction | automated_agent | infores:pathwhiz | [
"infores:rtx-kg2"
] | null | [
"rtxkg2"
] | null | null | null | null | null | null | null |
[
"infores:intact"
] | NCBIGene:43550 | biolink:directly_physically_interacts_with | NCBIGene:40014 | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | not_provided | not_provided | infores:intact | [
"infores:robokop-kg"
] | [
"PMID:15710747"
] | [
"robokop"
] | 1 | null | null | null | null | null | MI:0399 |
[
"infores:pathwhiz"
] | PathWhiz:PW002480 | biolink:occurs_in | GO:0005737 | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | prediction | automated_agent | infores:pathwhiz | [
"infores:rtx-kg2"
] | null | [
"rtxkg2"
] | null | null | null | null | null | null | null |
[
"infores:efo"
] | EFO:0022042 | biolink:subclass_of | EFO:0600058 | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | knowledge_assertion | manual_validation_of_automated_agent | infores:efo | [
"infores:rtx-kg2"
] | null | [
"rtxkg2"
] | null | null | null | null | null | null | null |
[
"infores:text-mining-provider-targeted"
] | NCBIGene:200186 | biolink:affects | NCBIGene:3667 | biolink:causes | null | null | null | activity_or_abundance | increased | null | null | null | null | null | null | null | null | null | null | not_provided | text_mining_agent | infores:text-mining-provider-targeted | [
"infores:robokop-kg"
] | [
"PMC:5667541",
"PMC:5667541"
] | [
"robokop"
] | 1 | null | null | 0.95399 | null | null | null |
[
"infores:string"
] | NCBIGene:391746 | biolink:physically_interacts_with | UniProtKB:Q15544-1 | null | null | null | null | null | null | null | null | NCBITaxon:9606 | null | null | null | null | null | null | null | knowledge_assertion | manual_agent | infores:string | [
"infores:robokop-kg"
] | null | [
"robokop"
] | null | null | 540 | null | null | null | null |
[
"infores:ensembl-gene"
] | REACT:R-HSA-9635486 | biolink:has_participant | ENSEMBL:ENST00000678491 | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | knowledge_assertion | automated_agent | infores:ensembl-gene | [
"infores:rtx-kg2"
] | null | [
"rtxkg2"
] | null | null | null | null | null | null | null |
[
"infores:semmeddb"
] | UMLS:C0034804 | biolink:interacts_with | UMLS:C1273639 | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | prediction | text_mining_agent | infores:semmeddb | [
"infores:rtx-kg2"
] | [
"PMID:16548355"
] | [
"rtxkg2"
] | 1 | null | null | null | null | null | null |
[
"infores:string"
] | UniProtKB:Q9UMW8-1 | biolink:coexpressed_with | UniProtKB:Q8WTP8-1 | null | null | null | null | null | null | null | null | NCBITaxon:9606 | null | null | null | null | null | null | null | knowledge_assertion | manual_agent | infores:string | [
"infores:robokop-kg"
] | null | [
"robokop"
] | null | null | 247 | null | null | null | null |
[
"infores:string"
] | UniProtKB:Q9Y3P9-1 | biolink:coexpressed_with | UniProtKB:Q14004-1 | null | null | null | null | null | null | null | null | NCBITaxon:9606 | null | null | null | null | null | null | null | knowledge_assertion | manual_agent | infores:string | [
"infores:robokop-kg"
] | null | [
"robokop"
] | null | null | 245 | null | null | null | null |
[
"infores:semmeddb"
] | UMLS:C1562561 | biolink:treats_or_applied_or_studied_to_treat | UMLS:C0011847 | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | prediction | text_mining_agent | infores:semmeddb | [
"infores:rtx-kg2"
] | [
"PMID:25809921",
"PMID:26273667",
"PMID:28485843",
"PMID:28987311",
"PMID:29059473",
"PMID:30919775"
] | [
"rtxkg2"
] | 6 | null | null | null | null | null | null |
[
"infores:primekg"
] | CHEBI:59124 | biolink:directly_physically_interacts_with | CHEBI:140421 | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | knowledge_assertion | not_provided | infores:primekg | null | null | [
"primekg"
] | null | null | null | null | null | null | null |
[
"infores:semmeddb"
] | UMLS:C0243192 | biolink:treats_or_applied_or_studied_to_treat | UMLS:C0234250 | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | prediction | text_mining_agent | infores:semmeddb | [
"infores:rtx-kg2"
] | [
"PMID:22722030"
] | [
"rtxkg2"
] | 1 | null | null | null | null | null | null |
[
"infores:string"
] | UniProtKB:Q8WTR2-1 | biolink:coexpressed_with | UniProtKB:Q99683-1 | null | null | null | null | null | null | null | null | NCBITaxon:9606 | null | null | null | null | null | null | null | knowledge_assertion | manual_agent | infores:string | [
"infores:robokop-kg"
] | null | [
"robokop"
] | null | null | 767 | null | null | null | null |
[
"infores:string"
] | NCBIGene:440686 | biolink:coexpressed_with | UniProtKB:Q9UNL4-1 | null | null | null | null | null | null | null | null | NCBITaxon:9606 | null | null | null | null | null | null | null | knowledge_assertion | manual_agent | infores:string | [
"infores:robokop-kg"
] | null | [
"robokop"
] | null | null | 966 | null | null | null | null |
[
"infores:umls-metathesaurus"
] | UMLS:C0239496 | biolink:related_to | UBERON:0001456 | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | knowledge_assertion | manual_agent | infores:umls-metathesaurus | [
"infores:rtx-kg2"
] | null | [
"rtxkg2"
] | null | null | null | null | null | null | null |
[
"infores:pathwhiz"
] | PathWhiz:PW082851 | biolink:has_participant | CHEBI:15978 | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | prediction | automated_agent | infores:pathwhiz | [
"infores:rtx-kg2"
] | null | [
"rtxkg2"
] | null | null | null | null | null | null | null |
[
"infores:hmdb"
] | PUBCHEM.COMPOUND:131763852 | biolink:related_to | NCBIGene:5034 | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | knowledge_assertion | manual_agent | infores:hmdb | [
"infores:rtx-kg2"
] | null | [
"rtxkg2"
] | null | null | null | null | null | null | null |
[
"infores:string"
] | UniProtKB:Q99590-1 | biolink:coexpressed_with | NCBIGene:6873 | null | null | null | null | null | null | null | null | NCBITaxon:9606 | null | null | null | null | null | null | null | knowledge_assertion | manual_agent | infores:string | [
"infores:robokop-kg"
] | null | [
"robokop"
] | null | null | 157 | null | null | null | null |
[
"infores:semmeddb"
] | CHEBI:94770 | biolink:interacts_with | NCBIGene:7369 | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | prediction | text_mining_agent | infores:semmeddb | [
"infores:rtx-kg2"
] | [
"PMID:31138757"
] | [
"rtxkg2"
] | 1 | null | null | null | null | null | null |
[
"infores:primekg"
] | UBERON:0002084 | biolink:expressed_in | NCBIGene:81573 | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | knowledge_assertion | not_provided | infores:primekg | null | null | [
"primekg"
] | null | null | null | null | null | null | null |
[
"infores:semmeddb"
] | UMLS:C0263370 | biolink:occurs_in | UMLS:C0030705 | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | prediction | text_mining_agent | infores:semmeddb | [
"infores:rtx-kg2"
] | [
"PMID:10438729",
"PMID:16684286",
"PMID:18258285",
"PMID:18694680",
"PMID:22971194",
"PMID:23356135",
"PMID:26053561",
"PMID:9553920"
] | [
"rtxkg2"
] | 8 | null | null | null | null | null | null |
[
"infores:ncbi-taxonomy"
] | UMLS:C4472387 | biolink:subclass_of | UMLS:C1203295 | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | knowledge_assertion | manual_agent | infores:ncbi-taxonomy | [
"infores:rtx-kg2"
] | null | [
"rtxkg2"
] | null | null | null | null | null | null | null |
[
"infores:string"
] | UniProtKB:O75340-1 | biolink:coexpressed_with | UniProtKB:Q49AR2-1 | null | null | null | null | null | null | null | null | NCBITaxon:9606 | null | null | null | null | null | null | null | knowledge_assertion | manual_agent | infores:string | [
"infores:robokop-kg"
] | null | [
"robokop"
] | null | null | 191 | null | null | null | null |
[
"infores:semmeddb"
] | NCBIGene:201633 | biolink:associated_with | MONDO:0005096 | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | prediction | text_mining_agent | infores:semmeddb | [
"infores:rtx-kg2"
] | [
"PMID:35611464",
"PMID:35926369"
] | [
"rtxkg2"
] | 2 | null | null | null | null | null | null |
[
"infores:goa"
] | GO:0002250 | biolink:has_participant | NCBIGene:27040 | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | knowledge_assertion | manual_validation_of_automated_agent | infores:goa | [
"infores:rtx-kg2"
] | [
"GO_REF:0000043"
] | [
"rtxkg2"
] | 1 | null | null | null | null | null | null |
[
"infores:string"
] | NCBIGene:162417 | biolink:coexpressed_with | UniProtKB:Q9HA92-1 | null | null | null | null | null | null | null | null | NCBITaxon:9606 | null | null | null | null | null | null | null | knowledge_assertion | manual_agent | infores:string | [
"infores:robokop-kg"
] | null | [
"robokop"
] | null | null | 223 | null | null | null | null |
[
"infores:string"
] | NCBIGene:23617 | biolink:coexpressed_with | UniProtKB:Q14980-1 | null | null | null | null | null | null | null | null | NCBITaxon:9606 | null | null | null | null | null | null | null | knowledge_assertion | manual_agent | infores:string | [
"infores:robokop-kg"
] | null | [
"robokop"
] | null | null | 172 | null | null | null | null |
[
"infores:semmeddb"
] | UMLS:C0022864 | biolink:associated_with | MONDO:0008294 | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | prediction | text_mining_agent | infores:semmeddb | [
"infores:rtx-kg2"
] | [
"PMID:2792710"
] | [
"rtxkg2"
] | 1 | null | null | null | null | null | null |
[
"infores:primekg"
] | NCBIGene:5867 | biolink:interacts_with | GO:0005829 | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | knowledge_assertion | not_provided | infores:primekg | null | null | [
"primekg"
] | null | null | null | null | null | null | null |
[
"infores:hetionet"
] | NCBIGene:10928 | biolink:catalyzes | GO:0030234 | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | not_provided | not_provided | infores:hetionet | [
"infores:robokop-kg"
] | null | [
"robokop"
] | null | null | null | null | null | null | null |
[
"infores:ensembl-gene"
] | ENSEMBL:ENST00000682566 | biolink:transcribed_from | NCBIGene:2110 | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | knowledge_assertion | automated_agent | infores:ensembl-gene | [
"infores:rtx-kg2"
] | null | [
"rtxkg2"
] | null | null | null | null | null | null | null |
[
"infores:hetionet"
] | GO:0098687 | biolink:has_part | NCBIGene:51111 | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | not_provided | not_provided | infores:hetionet | [
"infores:robokop-kg"
] | null | [
"robokop"
] | null | null | null | null | null | null | null |
[
"infores:semmeddb"
] | UBERON:0003823 | biolink:has_part | CHEBI:16828 | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | prediction | text_mining_agent | infores:semmeddb | [
"infores:rtx-kg2"
] | [
"PMID:18344702"
] | [
"rtxkg2"
] | 1 | null | null | null | null | null | null |
[
"infores:string"
] | UniProtKB:Q9H2T7-1 | biolink:coexpressed_with | UniProtKB:O96028-1 | null | null | null | null | null | null | null | null | NCBITaxon:9606 | null | null | null | null | null | null | null | knowledge_assertion | manual_agent | infores:string | [
"infores:robokop-kg"
] | null | [
"robokop"
] | null | null | 156 | null | null | null | null |
[
"infores:drugbank"
] | CHEBI:188719 | biolink:interacts_with | CHEBI:5779 | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | knowledge_assertion | manual_agent | infores:drugbank | [
"infores:rtx-kg2"
] | null | [
"rtxkg2"
] | null | null | null | null | null | null | null |
[
"infores:string"
] | UniProtKB:P21741-1 | biolink:physically_interacts_with | UniProtKB:P08253-1 | null | null | null | null | null | null | null | null | NCBITaxon:9606 | null | null | null | null | null | null | null | knowledge_assertion | manual_agent | infores:string | [
"infores:robokop-kg"
] | null | [
"robokop"
] | null | null | 163 | null | null | null | null |
[
"infores:hetionet"
] | NCBIGene:1017 | biolink:genetically_interacts_with | NCBIGene:5934 | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | not_provided | not_provided | infores:hetionet | [
"infores:robokop-kg"
] | null | [
"robokop"
] | null | null | null | null | null | null | null |
[
"infores:string"
] | NCBIGene:3576 | biolink:coexpressed_with | UniProtKB:Q96PG8-2 | null | null | null | null | null | null | null | null | NCBITaxon:9606 | null | null | null | null | null | null | null | knowledge_assertion | manual_agent | infores:string | [
"infores:robokop-kg"
] | null | [
"robokop"
] | null | null | 186 | null | null | null | null |
[
"infores:semmeddb"
] | UMLS:C0086282 | biolink:has_part | NCBIGene:1012 | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | prediction | text_mining_agent | infores:semmeddb | [
"infores:rtx-kg2"
] | [
"PMID:12067979",
"PMID:20534545"
] | [
"rtxkg2"
] | 2 | null | null | null | null | null | null |
[
"infores:ubergraph"
] | NCBITaxon:2396203 | biolink:subclass_of | NCBITaxon:305539 | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | knowledge_assertion | manual_agent | infores:ubergraph | [
"infores:robokop-kg"
] | null | [
"robokop"
] | null | null | null | null | null | null | null |
[
"infores:diseases"
] | NCBIGene:9536 | biolink:gene_associated_with_condition | MONDO:0003220 | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | prediction | text_mining_agent | infores:diseases | [
"infores:rtx-kg2"
] | [
"PMID:27803762",
"PMID:24130812",
"PMID:35163561",
"PMID:19956711",
"PMID:26585788",
"PMID:35600479",
"PMID:26139350",
"PMID:36655121",
"PMID:36370807",
"PMID:36372013",
"PMID:21804863",
"PMID:30455703",
"PMID:20017120",
"PMID:23785121",
"PMID:36358557",
"PMID:19296842",
"PMID:353146... | [
"rtxkg2"
] | 20 | null | null | null | null | null | null |
[
"infores:goa",
"infores:hetionet"
] | NCBIGene:3217 | biolink:actively_involved_in | GO:0090190 | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | not_provided | not_provided | infores:hetionet | [
"infores:robokop-kg"
] | null | [
"robokop"
] | null | null | null | null | null | null | null |
[
"infores:pathwhiz"
] | SMPDB:SMP0082524 | biolink:occurs_in | GO:0016020 | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | prediction | automated_agent | infores:pathwhiz | [
"infores:rtx-kg2"
] | null | [
"rtxkg2"
] | null | null | null | null | null | null | null |
[
"infores:goa"
] | NCBIGene:84329 | biolink:actively_involved_in | GO:0005886 | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | knowledge_assertion | manual_validation_of_automated_agent | infores:goa | [
"infores:rtx-kg2"
] | [
"GO_REF:0000033"
] | [
"rtxkg2"
] | 1 | null | null | null | null | null | null |
[
"infores:pathwhiz"
] | SMPDB:SMP0049633 | biolink:occurs_in | NCBITaxon:9913 | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | prediction | automated_agent | infores:pathwhiz | [
"infores:rtx-kg2"
] | null | [
"rtxkg2"
] | null | null | null | null | null | null | null |
[
"infores:semmeddb"
] | UMLS:C1522468 | biolink:affects | UMLS:C0883208 | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | prediction | text_mining_agent | infores:semmeddb | [
"infores:rtx-kg2"
] | [
"PMID:7295509"
] | [
"rtxkg2"
] | 1 | null | null | null | null | null | null |
[
"infores:diseases"
] | NCBIGene:677849 | biolink:gene_associated_with_condition | MONDO:0006312 | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | prediction | text_mining_agent | infores:diseases | [
"infores:rtx-kg2"
] | [
"PMID:36290744"
] | [
"rtxkg2"
] | 1 | null | null | null | null | null | null |
[
"infores:hmdb"
] | NCBIGene:9600 | biolink:affects | CHEBI:170881 | biolink:causes | null | null | null | transport | increased | null | null | null | null | null | null | null | null | null | null | knowledge_assertion | manual_agent | infores:hmdb | [
"infores:robokop-kg"
] | null | [
"robokop"
] | null | null | null | null | null | null | null |
[
"infores:semmeddb"
] | NCBIGene:142 | biolink:interacts_with | UMLS:C0751969 | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | prediction | text_mining_agent | infores:semmeddb | [
"infores:rtx-kg2"
] | [
"PMID:31351877"
] | [
"rtxkg2"
] | 1 | null | null | null | null | null | null |
[
"infores:ensembl-gene"
] | GO:0006364 | biolink:has_participant | ENSEMBL:ENST00000537428 | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | knowledge_assertion | automated_agent | infores:ensembl-gene | [
"infores:rtx-kg2"
] | null | [
"rtxkg2"
] | null | null | null | null | null | null | null |
[
"infores:string"
] | UniProtKB:P10721-1 | biolink:coexpressed_with | UniProtKB:P51654-3 | null | null | null | null | null | null | null | null | NCBITaxon:9606 | null | null | null | null | null | null | null | knowledge_assertion | manual_agent | infores:string | [
"infores:robokop-kg"
] | null | [
"robokop"
] | null | null | 440 | null | null | null | null |
[
"infores:bindingdb"
] | UNII:04XB9TB8OL | biolink:related_to | NCBIGene:11251 | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | knowledge_assertion | manual_agent | infores:bindingdb | [
"infores:robokop-kg"
] | [
"PMID:22224640"
] | [
"robokop"
] | 1 | null | null | null | 7.89 | pKi | null |
[
"infores:ubergraph"
] | NCBITaxon:759443 | biolink:subclass_of | NCBITaxon:119213 | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | knowledge_assertion | manual_agent | infores:ubergraph | [
"infores:robokop-kg"
] | null | [
"robokop"
] | null | null | null | null | null | null | null |
[
"infores:diseases"
] | NCBIGene:677796 | biolink:gene_associated_with_condition | MONDO:0015004 | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | prediction | text_mining_agent | infores:diseases | [
"infores:rtx-kg2"
] | [
"PMID:25363811",
"PMID:33419375",
"PMID:33255756"
] | [
"rtxkg2"
] | 3 | null | null | null | null | null | null |
[
"infores:string"
] | UniProtKB:Q9UQ53-3 | biolink:coexpressed_with | UniProtKB:Q9BW04-1 | null | null | null | null | null | null | null | null | NCBITaxon:9606 | null | null | null | null | null | null | null | knowledge_assertion | manual_agent | infores:string | [
"infores:robokop-kg"
] | null | [
"robokop"
] | null | null | 329 | null | null | null | null |
[
"infores:semmeddb"
] | UMLS:C0998219 | biolink:interacts_with | NCBITaxon:663 | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | prediction | text_mining_agent | infores:semmeddb | [
"infores:rtx-kg2"
] | [
"PMID:10963396"
] | [
"rtxkg2"
] | 1 | null | null | null | null | null | null |
[
"infores:pr",
"infores:ubergraph"
] | PR:000041027 | biolink:subclass_of | PR:000011227 | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | knowledge_assertion | manual_validation_of_automated_agent | infores:pr | [
"infores:rtx-kg2"
] | null | [
"rtxkg2"
] | null | null | null | null | null | null | null |
[
"infores:semmeddb"
] | CHEBI:15343 | biolink:interacts_with | CHEBI:13389 | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | prediction | text_mining_agent | infores:semmeddb | [
"infores:rtx-kg2"
] | [
"PMID:28758645",
"PMID:3416486",
"PMID:7363876",
"PMID:8590612"
] | [
"rtxkg2"
] | 4 | null | null | null | null | null | null |
[
"infores:string"
] | NCBIGene:80349 | biolink:coexpressed_with | UniProtKB:Q6ZS86-1 | null | null | null | null | null | null | null | null | NCBITaxon:9606 | null | null | null | null | null | null | null | knowledge_assertion | manual_agent | infores:string | [
"infores:robokop-kg"
] | null | [
"robokop"
] | null | null | 192 | null | null | null | null |
[
"infores:pathwhiz"
] | PathWhiz:PW092093 | biolink:occurs_in | NCBITaxon:3702 | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | prediction | automated_agent | infores:pathwhiz | [
"infores:rtx-kg2"
] | null | [
"rtxkg2"
] | null | null | null | null | null | null | null |
[
"infores:ubergraph"
] | NCBIGene:8992 | biolink:subclass_of | PR:000029067 | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | knowledge_assertion | manual_agent | infores:ubergraph | [
"infores:robokop-kg"
] | null | [
"robokop"
] | null | null | null | null | null | null | null |
[
"infores:primekg"
] | CHEBI:45783 | biolink:directly_physically_interacts_with | UNII:5RR3JFZ771 | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | knowledge_assertion | not_provided | infores:primekg | null | null | [
"primekg"
] | null | null | null | null | null | null | null |
[
"infores:primekg"
] | MONDO:0013014 | biolink:has_phenotype | MONDO:0005516 | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | knowledge_assertion | not_provided | infores:primekg | null | null | [
"primekg"
] | null | null | null | null | null | null | null |
[
"infores:chebi",
"infores:ubergraph"
] | CHEBI:39585 | biolink:subclass_of | CHEBI:27177 | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | knowledge_assertion | manual_agent | infores:ubergraph | [
"infores:robokop-kg"
] | null | [
"robokop"
] | null | null | null | null | null | null | null |
[
"infores:string"
] | NCBIGene:25938 | biolink:related_to | NCBIGene:494143 | null | null | null | null | null | null | null | null | NCBITaxon:9606 | null | null | null | null | null | null | null | knowledge_assertion | manual_agent | infores:string | [
"infores:robokop-kg"
] | null | [
"robokop"
] | null | null | 217 | null | null | null | null |
[
"infores:primekg"
] | UBERON:0000468 | biolink:expressed_in | NCBIGene:842 | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | knowledge_assertion | not_provided | infores:primekg | null | null | [
"primekg"
] | null | null | null | null | null | null | null |
[
"infores:semmeddb"
] | MONDO:0004979 | biolink:affects | UMLS:C0542277 | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | prediction | text_mining_agent | infores:semmeddb | [
"infores:rtx-kg2"
] | [
"PMID:16520670",
"PMID:17585104",
"PMID:19164328"
] | [
"rtxkg2"
] | 3 | null | null | null | null | null | null |
[
"infores:fma-obo",
"infores:fma-umls"
] | UMLS:C0933678 | biolink:has_part | UMLS:C2335339 | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | knowledge_assertion | manual_agent | infores:fma-obo | [
"infores:rtx-kg2"
] | null | [
"rtxkg2"
] | null | null | null | null | null | null | null |
[
"infores:semmeddb"
] | NCIT:C172787 | biolink:treats_or_applied_or_studied_to_treat | MONDO:0004959 | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | prediction | text_mining_agent | infores:semmeddb | [
"infores:rtx-kg2"
] | [
"PMID:35259530",
"PMID:37102222"
] | [
"rtxkg2"
] | 2 | null | null | null | null | null | null |
[
"infores:string"
] | NCBIGene:27339 | biolink:coexpressed_with | NCBIGene:9739 | null | null | null | null | null | null | null | null | NCBITaxon:9606 | null | null | null | null | null | null | null | knowledge_assertion | manual_agent | infores:string | [
"infores:robokop-kg"
] | null | [
"robokop"
] | null | null | 292 | null | null | null | null |
[
"infores:string"
] | UniProtKB:Q6P1K1-1 | biolink:coexpressed_with | NCBIGene:23657 | null | null | null | null | null | null | null | null | NCBITaxon:9606 | null | null | null | null | null | null | null | knowledge_assertion | manual_agent | infores:string | [
"infores:robokop-kg"
] | null | [
"robokop"
] | null | null | 444 | null | null | null | null |
[
"infores:string"
] | UniProtKB:P06731-1 | biolink:coexpressed_with | NCBIGene:2524 | null | null | null | null | null | null | null | null | NCBITaxon:9606 | null | null | null | null | null | null | null | knowledge_assertion | manual_agent | infores:string | [
"infores:robokop-kg"
] | null | [
"robokop"
] | null | null | 313 | null | null | null | null |
[
"infores:pathwhiz"
] | SMPDB:SMP0006616 | biolink:occurs_in | GO:0033162 | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | prediction | automated_agent | infores:pathwhiz | [
"infores:rtx-kg2"
] | null | [
"rtxkg2"
] | null | null | null | null | null | null | null |
[
"infores:string"
] | NCBIGene:7097 | biolink:coexpressed_with | NCBIGene:6515 | null | null | null | null | null | null | null | null | NCBITaxon:9606 | null | null | null | null | null | null | null | knowledge_assertion | manual_agent | infores:string | [
"infores:robokop-kg"
] | null | [
"robokop"
] | null | null | 168 | null | null | null | null |
[
"infores:pathwhiz"
] | SMPDB:SMP0036088 | biolink:occurs_in | GO:0005886 | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | prediction | automated_agent | infores:pathwhiz | [
"infores:rtx-kg2"
] | null | [
"rtxkg2"
] | null | null | null | null | null | null | null |
[
"infores:ubergraph"
] | NCBITaxon:1908589 | biolink:subclass_of | NCBITaxon:15170 | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | knowledge_assertion | manual_agent | infores:ubergraph | [
"infores:robokop-kg"
] | null | [
"robokop"
] | null | null | null | null | null | null | null |
[
"infores:semmeddb"
] | MONDO:0008056 | biolink:associated_with | GO:0016311 | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | prediction | text_mining_agent | infores:semmeddb | [
"infores:rtx-kg2"
] | [
"PMID:36230978"
] | [
"rtxkg2"
] | 1 | null | null | null | null | null | null |
[
"infores:semmeddb"
] | UMLS:C0753208 | biolink:associated_with | MONDO:0021063 | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | prediction | text_mining_agent | infores:semmeddb | [
"infores:rtx-kg2"
] | [
"PMID:20604972"
] | [
"rtxkg2"
] | 1 | null | null | null | null | null | null |
[
"infores:hmdb"
] | HMDB:HMDB0258289 | biolink:located_in | UBERON:0000178 | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | knowledge_assertion | manual_agent | infores:hmdb | [
"infores:rtx-kg2"
] | null | [
"rtxkg2"
] | null | null | null | null | null | null | null |
[
"infores:ubergraph"
] | NCBITaxon:1144292 | biolink:subclass_of | NCBITaxon:490041 | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | knowledge_assertion | manual_agent | infores:ubergraph | [
"infores:robokop-kg"
] | null | [
"robokop"
] | null | null | null | null | null | null | null |
[
"infores:icd10pcs-umls"
] | UMLS:C2456429 | biolink:subclass_of | UMLS:C2512421 | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | knowledge_assertion | manual_agent | infores:icd10pcs-umls | [
"infores:rtx-kg2"
] | null | [
"rtxkg2"
] | null | null | null | null | null | null | null |
[
"infores:ctd"
] | MESH:D052638 | biolink:contributes_to | MONDO:0001370 | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | knowledge_assertion | manual_agent | infores:ctd | [
"infores:robokop-kg"
] | [
"PMID:28391149"
] | [
"robokop"
] | 1 | null | null | null | null | null | null |
[
"infores:pathwhiz"
] | SMPDB:SMP0082579 | biolink:occurs_in | NCBITaxon:3702 | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | prediction | automated_agent | infores:pathwhiz | [
"infores:rtx-kg2"
] | null | [
"rtxkg2"
] | null | null | null | null | null | null | null |
[
"infores:string"
] | NCBIGene:6282 | biolink:coexpressed_with | NCBIGene:6279 | null | null | null | null | null | null | null | null | NCBITaxon:9606 | null | null | null | null | null | null | null | knowledge_assertion | manual_agent | infores:string | [
"infores:robokop-kg"
] | null | [
"robokop"
] | null | null | 473 | null | null | null | null |
[
"infores:drugbank"
] | CHEBI:585948 | biolink:interacts_with | UNII:4685R51V7M | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | knowledge_assertion | manual_agent | infores:drugbank | [
"infores:rtx-kg2"
] | null | [
"rtxkg2"
] | null | null | null | null | null | null | null |
[
"infores:string"
] | UniProtKB:P33316-3 | biolink:coexpressed_with | NCBIGene:7520 | null | null | null | null | null | null | null | null | NCBITaxon:9606 | null | null | null | null | null | null | null | knowledge_assertion | manual_agent | infores:string | [
"infores:robokop-kg"
] | null | [
"robokop"
] | null | null | 196 | null | null | null | null |
[
"infores:primekg"
] | CHEBI:6931 | biolink:directly_physically_interacts_with | CHEBI:182159 | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | knowledge_assertion | not_provided | infores:primekg | null | null | [
"primekg"
] | null | null | null | null | null | null | null |
[
"infores:vandf-umls",
"infores:rxnorm"
] | RXCUI:1599803 | biolink:has_part | UMLS:C3652776 | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | knowledge_assertion | manual_agent | infores:vandf-umls | [
"infores:rtx-kg2"
] | null | [
"rtxkg2"
] | null | null | null | null | null | null | null |
[
"infores:hmdb"
] | SMPDB:SMP0046939 | biolink:has_participant | CHEBI:13389 | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | knowledge_assertion | manual_agent | infores:hmdb | [
"infores:rtx-kg2"
] | null | [
"rtxkg2"
] | null | null | null | null | null | null | null |
[
"infores:pathwhiz"
] | PathWhiz:PW099007 | biolink:occurs_in | GO:0005759 | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | prediction | automated_agent | infores:pathwhiz | [
"infores:rtx-kg2"
] | null | [
"rtxkg2"
] | null | null | null | null | null | null | null |
[
"infores:semmeddb"
] | UMLS:C0600519 | biolink:affects | UMLS:C0410000 | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | prediction | text_mining_agent | infores:semmeddb | [
"infores:rtx-kg2"
] | [
"PMID:23272670"
] | [
"rtxkg2"
] | 1 | null | null | null | null | null | null |
[
"infores:primekg"
] | CHEBI:7822 | biolink:directly_physically_interacts_with | CHEBI:141552 | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | knowledge_assertion | not_provided | infores:primekg | null | null | [
"primekg"
] | null | null | null | null | null | null | null |
[
"infores:primekg"
] | UBERON:0002114 | biolink:expressed_in | NCBIGene:29066 | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | knowledge_assertion | not_provided | infores:primekg | null | null | [
"primekg"
] | null | null | null | null | null | null | null |
[
"infores:ncit"
] | UMLS:C0523817 | biolink:subclass_of | UMLS:C1879922 | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | null | knowledge_assertion | manual_agent | infores:ncit | [
"infores:rtx-kg2"
] | null | [
"rtxkg2"
] | null | null | null | null | null | null | null |
End of preview. Expand in Data Studio
Dataset Card for Every Cure Integrated Knowledge Graph (Edges)
Dataset Summary
The Every Cure KG is currently (as of February 2026) essentially an integrated, simplified and filtered merged KG comprising ROBOKOP and RTX-KG2.
The "Edges" dataset contains the records for all edges in the graph, including metadata.
See nodes dataset for the corresponding set of nodes.
Source Data
Licensing Information
See LICENSE for details.
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